0.022134
0.000000
0.000000
0.000000
0.010580
0.000000
0.000000
0.000000
0.009523
0.00000
0.00000
0.00000
Fromme, J.C.
Verdine, G.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90
90
90
45.179
94.518
105.004
C10 H15 N5 O9 P2
411.202
n
2'-DEOXY-ADENOSINE-3'-5'-DIPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
P
N
6
N
O
N
7
N
O
N
8
N
O
Y
9
N
N
Y
10
N
C
Y
11
N
N
Y
12
N
C
Y
13
N
N
Y
14
N
C
N
15
N
N
Y
16
N
C
Y
17
N
N
Y
18
N
C
N
19
N
C
N
20
N
C
N
21
R
C
N
22
N
O
N
23
R
C
N
24
S
C
N
25
N
O
N
26
N
O
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
N
N
43
S
C
N
44
N
C
N
45
N
O
N
46
N
C
N
47
N
O
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
N
N
56
S
C
N
57
N
C
N
58
N
O
N
59
N
C
N
60
N
C
N
61
N
C
N
62
N
N
N
63
N
C
N
64
N
N
N
65
N
N
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
N
N
83
S
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
S
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
O
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
R
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
S
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
O
N
130
N
P
N
131
N
O
N
132
N
O
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
O
N
137
S
C
N
138
N
O
N
139
N
C
N
140
R
C
Y
141
N
N
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
N
146
N
N
Y
147
N
N
Y
148
N
C
Y
149
N
N
Y
150
N
C
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
O
N
166
N
P
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
C
N
171
R
C
N
172
N
O
N
173
S
C
N
174
N
O
N
175
N
C
N
176
R
C
N
177
N
N
N
178
N
C
N
179
N
O
N
180
N
N
N
181
N
C
N
182
N
N
N
183
N
C
N
184
N
C
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
O
N
200
N
P
N
201
N
O
N
202
N
O
N
203
N
O
N
204
N
C
N
205
R
C
N
206
N
O
N
207
S
C
N
208
N
O
N
209
N
C
N
210
R
C
Y
211
N
N
Y
212
N
C
Y
213
N
N
Y
214
N
C
N
215
N
C
N
216
N
O
N
217
N
N
N
218
N
C
N
219
N
N
N
220
N
N
Y
221
N
C
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
O
N
237
N
P
N
238
N
O
N
239
N
O
N
240
N
O
N
241
N
C
N
242
R
C
N
243
N
O
N
244
S
C
N
245
N
O
N
246
N
C
N
247
R
C
N
248
N
N
N
249
N
C
N
250
N
O
N
251
N
N
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
N
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
O
N
300
N
O
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
N
Y
328
N
C
Y
329
N
C
Y
330
N
N
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
S
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
N
372
N
C
N
373
N
C
N
374
N
C
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
C
N
397
N
N
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
C
N
420
N
S
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
N
C
N
462
N
C
N
463
N
C
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
N
N
475
S
C
N
476
N
C
N
477
N
O
N
478
N
C
N
479
N
O
N
480
N
O
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
R
C
N
493
N
O
N
494
N
C
N
495
N
O
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
N
N
506
S
C
N
507
N
C
N
508
N
O
N
509
N
C
Y
510
N
C
Y
511
N
C
Y
512
N
C
Y
513
N
N
Y
514
N
C
Y
515
N
C
Y
516
N
C
Y
517
N
C
Y
518
N
C
N
519
N
O
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
N
N
533
S
C
N
534
N
C
N
535
N
O
N
536
N
C
Y
537
N
C
Y
538
N
C
Y
539
N
C
Y
540
N
C
Y
541
N
C
Y
542
N
C
N
543
N
O
N
544
N
O
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
N
N
557
S
C
N
558
N
C
N
559
N
O
N
560
N
C
N
561
N
C
N
562
N
C
N
563
N
O
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
ZN
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
doub
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
Y
13
N
sing
Y
14
N
sing
N
15
N
sing
Y
16
N
doub
Y
17
N
sing
Y
18
N
sing
Y
19
N
doub
N
20
N
sing
Y
21
N
sing
N
22
N
sing
Y
23
N
doub
N
24
N
sing
N
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
doub
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
Y
149
N
sing
Y
150
N
sing
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
Y
154
N
sing
Y
155
N
doub
N
156
N
sing
Y
157
N
doub
N
158
N
sing
N
159
N
sing
Y
160
N
sing
Y
161
N
doub
N
162
N
sing
Y
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
Y
222
N
sing
Y
223
N
sing
Y
224
N
doub
N
225
N
sing
Y
226
N
sing
N
227
N
sing
Y
228
N
doub
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
sing
Y
333
N
doub
Y
334
N
doub
N
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
doub
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
Y
440
N
doub
Y
441
N
sing
Y
442
N
sing
N
443
N
sing
Y
444
N
doub
N
445
N
sing
Y
446
N
doub
N
447
N
sing
Y
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
doub
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
doub
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
doub
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
doub
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
Y
509
N
doub
Y
510
N
sing
Y
511
N
sing
N
512
N
sing
Y
513
N
doub
Y
514
N
sing
Y
515
N
sing
N
516
N
sing
Y
517
N
sing
Y
518
N
doub
N
519
N
sing
Y
520
N
doub
N
521
N
sing
Y
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
doub
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
Y
537
N
doub
Y
538
N
sing
Y
539
N
sing
N
540
N
sing
Y
541
N
doub
N
542
N
sing
Y
543
N
doub
N
544
N
sing
Y
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
doub
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
9
544
552
12055620
Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.
2002
10.2210/pdb1l2b/pdb
pdb_00001l2b
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-01-26
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
0.9
1.0
A1
CHESS
0.9
SYNCHROTRON
CHESS BEAMLINE A1
4948.217
5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'
1
syn
polymer
2482.572
5'-D(*TP*GP*CP*GP*TP*CP*C*(AD2))-3'
1
syn
polymer
2073.386
5'-D(P*GP*TP*CP*TP*AP*CP*C)-3'
1
syn
polymer
30739.510
MutM
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
18.015
water
123
nat
water
FPG
no
no
(DA)(DG)(DG)(DT)(DA)(DG)(DA)(DC)(DC)(DT)(DG)(DG)(DA)(DC)(DG)(DC)
AGGTAGACCTGGACGC
B
polydeoxyribonucleotide
no
yes
(DT)(DG)(DC)(DG)(DT)(DC)(DC)(AD2)
TGCGTCCA
C
polydeoxyribonucleotide
no
no
(DG)(DT)(DC)(DT)(DA)(DC)(DC)
GTCTACC
D
polydeoxyribonucleotide
no
no
MPELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGR
YAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVK
ALLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLY
VYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR
MPELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGR
YAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVK
ALLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLY
VYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Geobacillus
Escherichia
sample
mutM
1422
Geobacillus stearothermophilus
562
Escherichia coli
1
2.76
57.94
VAPOR DIFFUSION, HANGING DROP
7.5
PEG 8000, magnesium acetate, cacodylate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
PEG 8000
1
magnesium acetate
1
cacodylate
1
-4.061
1
19
B
4
D
21
2.805
B_DG4:DC21_D
1
-4.774
0.608
-0.433
-0.050
-10.289
1
20
B
5
D
20
-5.830
B_DA5:DT20_D
2
-0.345
-0.876
-0.036
-0.545
7.971
1
19
B
6
D
19
-7.068
B_DC6:DG19_D
3
7.177
-0.452
-0.369
-0.060
-24.820
1
20
B
8
C
17
-19.572
B_DT8:AD217_C
4
2.967
0.604
-0.134
0.206
4.505
1
19
B
9
C
16
-6.961
B_DG9:DC16_C
5
-9.597
0.427
-0.452
-0.068
6.511
B
10
C
15
0.819
B_DG10:DC15_C
6
-19.724
1.138
0.402
0.562
10.220
1
B
11
C
14
24.180
B_DA11:DT14_C
7
-15.019
-0.908
0.561
0.327
23.492
1
B
12
C
13
10.329
B_DC12:DG13_C
8
-0.788
0.397
-0.265
0.638
3.491
27.153
B
B
4
5
2.207
D
D
21
20
3.512
1.035
-0.327
-0.880
BB_DG4DA5:DT20DC21_DD
1
-2.089
4.454
27.055
-2.155
0.133
3.112
26.127
B
B
5
6
8.648
D
D
20
19
3.176
3.887
0.410
-0.381
BB_DA5DC6:DG19DT20_DD
2
2.967
-6.600
25.673
-1.869
-0.124
3.158
27.027
B
B
8
9
11.092
C
C
17
16
2.970
5.153
0.238
1.332
BB_DT8DG9:DC16AD217_CC
3
-0.814
1.753
26.528
1.611
-0.704
3.365
39.912
B
B
9
10
-1.764
C
C
16
15
3.483
-1.198
0.310
0.485
BB_DG9DG10:DC15DC16_CC
4
-7.036
10.359
39.294
0.856
-1.310
3.324
35.536
B
B
10
11
-10.481
C
C
15
14
3.283
-6.348
1.363
0.301
BB_DG10DA11:DT14DC15_CC
5
4.535
-7.487
34.696
1.441
-1.557
3.054
37.941
B
B
11
12
15.198
C
C
14
13
3.127
9.764
-0.586
0.362
BB_DA11DC12:DG13DT14_CC
6
3.496
-5.442
36.547
-0.646
1.332
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_sheet
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-06-14
1
1
2008-04-28
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_sheet.number_strands
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1L1T IS MutM (Fpg) Bound to Abasic-Site Containing DNA
1l1z is MutM (Fpg) Covalent-DNA Intermediate
1L2C is MutM (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex
1l2d is MutM (Fpg) - DNA Estranged Guanine Mismatch Recognition Complex
RCSB
Y
RCSB
2002-02-20
REL
REL
ZN
ZINC ION
HOH
water
1L1T
PDB
experimental model
ZN
300
5
ZN
ZN
300
A
HOH
35
6
HOH
HOH
35
B
HOH
64
6
HOH
HOH
64
B
HOH
77
6
HOH
HOH
77
B
HOH
85
6
HOH
HOH
85
B
HOH
98
6
HOH
HOH
98
B
HOH
113
6
HOH
HOH
113
B
HOH
115
6
HOH
HOH
115
B
HOH
122
6
HOH
HOH
122
B
HOH
81
6
HOH
HOH
81
C
HOH
104
6
HOH
HOH
104
C
HOH
26
6
HOH
HOH
26
D
HOH
32
6
HOH
HOH
32
D
HOH
103
6
HOH
HOH
103
D
HOH
112
6
HOH
HOH
112
D
HOH
1
6
HOH
HOH
301
A
HOH
2
6
HOH
HOH
302
A
HOH
3
6
HOH
HOH
303
A
HOH
4
6
HOH
HOH
304
A
HOH
5
6
HOH
HOH
305
A
HOH
6
6
HOH
HOH
306
A
HOH
7
6
HOH
HOH
307
A
HOH
8
6
HOH
HOH
308
A
HOH
9
6
HOH
HOH
309
A
HOH
10
6
HOH
HOH
310
A
HOH
11
6
HOH
HOH
311
A
HOH
12
6
HOH
HOH
312
A
HOH
13
6
HOH
HOH
313
A
HOH
14
6
HOH
HOH
314
A
HOH
15
6
HOH
HOH
315
A
HOH
16
6
HOH
HOH
316
A
HOH
17
6
HOH
HOH
317
A
HOH
18
6
HOH
HOH
318
A
HOH
19
6
HOH
HOH
319
A
HOH
20
6
HOH
HOH
320
A
HOH
21
6
HOH
HOH
321
A
HOH
22
6
HOH
HOH
322
A
HOH
23
6
HOH
HOH
323
A
HOH
24
6
HOH
HOH
324
A
HOH
25
6
HOH
HOH
325
A
HOH
27
6
HOH
HOH
326
A
HOH
28
6
HOH
HOH
327
A
HOH
29
6
HOH
HOH
328
A
HOH
30
6
HOH
HOH
329
A
HOH
31
6
HOH
HOH
330
A
HOH
33
6
HOH
HOH
331
A
HOH
34
6
HOH
HOH
332
A
HOH
36
6
HOH
HOH
333
A
HOH
37
6
HOH
HOH
334
A
HOH
38
6
HOH
HOH
335
A
HOH
39
6
HOH
HOH
336
A
HOH
40
6
HOH
HOH
337
A
HOH
41
6
HOH
HOH
338
A
HOH
42
6
HOH
HOH
339
A
HOH
43
6
HOH
HOH
340
A
HOH
44
6
HOH
HOH
341
A
HOH
45
6
HOH
HOH
342
A
HOH
46
6
HOH
HOH
343
A
HOH
47
6
HOH
HOH
344
A
HOH
48
6
HOH
HOH
345
A
HOH
49
6
HOH
HOH
346
A
HOH
50
6
HOH
HOH
347
A
HOH
51
6
HOH
HOH
348
A
HOH
52
6
HOH
HOH
349
A
HOH
53
6
HOH
HOH
350
A
HOH
54
6
HOH
HOH
351
A
HOH
55
6
HOH
HOH
352
A
HOH
56
6
HOH
HOH
353
A
HOH
57
6
HOH
HOH
354
A
HOH
58
6
HOH
HOH
355
A
HOH
59
6
HOH
HOH
356
A
HOH
60
6
HOH
HOH
357
A
HOH
61
6
HOH
HOH
358
A
HOH
62
6
HOH
HOH
359
A
HOH
63
6
HOH
HOH
360
A
HOH
66
6
HOH
HOH
361
A
HOH
67
6
HOH
HOH
362
A
HOH
68
6
HOH
HOH
363
A
HOH
69
6
HOH
HOH
364
A
HOH
70
6
HOH
HOH
365
A
HOH
71
6
HOH
HOH
366
A
HOH
72
6
HOH
HOH
367
A
HOH
73
6
HOH
HOH
368
A
HOH
74
6
HOH
HOH
369
A
HOH
75
6
HOH
HOH
370
A
HOH
76
6
HOH
HOH
371
A
HOH
78
6
HOH
HOH
372
A
HOH
79
6
HOH
HOH
373
A
HOH
80
6
HOH
HOH
374
A
HOH
82
6
HOH
HOH
375
A
HOH
83
6
HOH
HOH
376
A
HOH
84
6
HOH
HOH
377
A
HOH
86
6
HOH
HOH
378
A
HOH
87
6
HOH
HOH
379
A
HOH
88
6
HOH
HOH
380
A
HOH
89
6
HOH
HOH
381
A
HOH
90
6
HOH
HOH
382
A
HOH
91
6
HOH
HOH
383
A
HOH
92
6
HOH
HOH
384
A
HOH
93
6
HOH
HOH
385
A
HOH
94
6
HOH
HOH
386
A
HOH
95
6
HOH
HOH
387
A
HOH
96
6
HOH
HOH
388
A
HOH
97
6
HOH
HOH
389
A
HOH
99
6
HOH
HOH
390
A
HOH
100
6
HOH
HOH
391
A
HOH
101
6
HOH
HOH
392
A
HOH
102
6
HOH
HOH
393
A
HOH
105
6
HOH
HOH
394
A
HOH
106
6
HOH
HOH
395
A
HOH
107
6
HOH
HOH
396
A
HOH
108
6
HOH
HOH
397
A
HOH
109
6
HOH
HOH
398
A
HOH
110
6
HOH
HOH
399
A
HOH
111
6
HOH
HOH
400
A
HOH
114
6
HOH
HOH
401
A
HOH
116
6
HOH
HOH
402
A
HOH
117
6
HOH
HOH
403
A
HOH
118
6
HOH
HOH
404
A
HOH
119
6
HOH
HOH
405
A
HOH
120
6
HOH
HOH
406
A
HOH
121
6
HOH
HOH
407
A
HOH
123
6
HOH
HOH
408
A
HOH
124
6
HOH
HOH
409
A
n
1
-1
B
n
2
0
B
GUA
1
n
3
DG
1
B
THY
2
n
4
DT
2
B
ADE
3
n
5
DA
3
B
GUA
4
n
6
DG
4
B
ADE
5
n
7
DA
5
B
CYT
6
n
8
DC
6
B
CYT
7
n
9
DC
7
B
THY
8
n
10
DT
8
B
GUA
9
n
11
DG
9
B
GUA
10
n
12
DG
10
B
ADE
11
n
13
DA
11
B
CYT
12
n
14
DC
12
B
n
15
13
B
n
16
14
B
n
1
10
C
n
2
11
C
n
3
12
C
GUA
13
n
4
DG
13
C
THY
14
n
5
DT
14
C
CYT
15
n
6
DC
15
C
CYT
16
n
7
DC
16
C
ADX
17
n
8
AD2
17
C
GUA
19
n
1
DG
19
D
THY
20
n
2
DT
20
D
CYT
21
n
3
DC
21
D
THY
22
n
4
DT
22
D
ADE
23
n
5
DA
23
D
CYT
24
n
6
DC
24
D
n
7
25
D
n
1
1
A
PRO
2
n
2
PRO
2
A
GLU
3
n
3
GLU
3
A
LEU
4
n
4
LEU
4
A
PRO
5
n
5
PRO
5
A
GLU
6
n
6
GLU
6
A
VAL
7
n
7
VAL
7
A
GLU
8
n
8
GLU
8
A
THR
9
n
9
THR
9
A
ILE
10
n
10
ILE
10
A
ARG
11
n
11
ARG
11
A
ALA
12
n
12
ARG
12
A
THR
13
n
13
THR
13
A
LEU
14
n
14
LEU
14
A
LEU
15
n
15
LEU
15
A
PRO
16
n
16
PRO
16
A
LEU
17
n
17
LEU
17
A
ILE
18
n
18
ILE
18
A
VAL
19
n
19
VAL
19
A
GLY
20
n
20
GLY
20
A
LYS
21
n
21
LYS
21
A
THR
22
n
22
THR
22
A
ILE
23
n
23
ILE
23
A
GLU
24
n
24
GLU
24
A
ASP
25
n
25
ASP
25
A
VAL
26
n
26
VAL
26
A
ARG
27
n
27
ARG
27
A
ILE
28
n
28
ILE
28
A
PHE
29
n
29
PHE
29
A
TRP
30
n
30
TRP
30
A
PRO
31
n
31
PRO
31
A
ASN
32
n
32
ASN
32
A
ILE
33
n
33
ILE
33
A
ILE
34
n
34
ILE
34
A
ARG
35
n
35
ARG
35
A
HIS
36
n
36
HIS
36
A
PRO
37
n
37
PRO
37
A
GLY
38
n
38
ARG
38
A
ASP
39
n
39
ASP
39
A
SER
40
n
40
SER
40
A
ALA
41
n
41
GLU
41
A
ALA
42
n
42
ALA
42
A
PHE
43
n
43
PHE
43
A
ALA
44
n
44
ALA
44
A
ALA
45
n
45
ALA
45
A
ARG
46
n
46
ARG
46
A
MET
47
n
47
MET
47
A
ILE
48
n
48
ILE
48
A
GLY
49
n
49
GLY
49
A
GLN
50
n
50
GLN
50
A
THR
51
n
51
THR
51
A
VAL
52
n
52
VAL
52
A
ARG
53
n
53
ARG
53
A
GLY
54
n
54
GLY
54
A
LEU
55
n
55
LEU
55
A
GLU
56
n
56
GLU
56
A
ARG
57
n
57
ARG
57
A
ARG
58
n
58
ARG
58
A
GLY
59
n
59
GLY
59
A
LYS
60
n
60
LYS
60
A
PHE
61
n
61
PHE
61
A
LEU
62
n
62
LEU
62
A
LYS
63
n
63
LYS
63
A
PHE
64
n
64
PHE
64
A
LEU
65
n
65
LEU
65
A
LEU
66
n
66
LEU
66
A
ASP
67
n
67
ASP
67
A
ALA
68
n
68
ARG
68
A
ASP
69
n
69
ASP
69
A
ALA
70
n
70
ALA
70
A
LEU
71
n
71
LEU
71
A
ILE
72
n
72
ILE
72
A
SER
73
n
73
SER
73
A
HIS
74
n
74
HIS
74
A
LEU
75
n
75
LEU
75
A
ARG
76
n
76
ARG
76
A
MET
77
n
77
MET
77
A
GLU
78
n
78
GLU
78
A
GLY
79
n
79
GLY
79
A
ALA
80
n
80
ARG
80
A
TYR
81
n
81
TYR
81
A
ALA
82
n
82
ALA
82
A
VAL
83
n
83
VAL
83
A
ALA
84
n
84
ALA
84
A
SER
85
n
85
SER
85
A
ALA
86
n
86
ALA
86
A
LEU
87
n
87
LEU
87
A
GLU
88
n
88
GLU
88
A
PRO
89
n
89
PRO
89
A
LEU
90
n
90
LEU
90
A
GLU
91
n
91
GLU
91
A
PRO
92
n
92
PRO
92
A
HIS
93
n
93
HIS
93
A
THR
94
n
94
THR
94
A
HIS
95
n
95
HIS
95
A
VAL
96
n
96
VAL
96
A
VAL
97
n
97
VAL
97
A
PHE
98
n
98
PHE
98
A
CYS
99
n
99
CYS
99
A
PHE
100
n
100
PHE
100
A
THR
101
n
101
THR
101
A
ASP
102
n
102
ASP
102
A
GLY
103
n
103
GLY
103
A
SER
104
n
104
SER
104
A
GLU
105
n
105
GLU
105
A
LEU
106
n
106
LEU
106
A
ARG
107
n
107
ARG
107
A
TYR
108
n
108
TYR
108
A
ARG
109
n
109
ARG
109
A
ASP
110
n
110
ASP
110
A
VAL
111
n
111
VAL
111
A
ARG
112
n
112
ARG
112
A
LYS
113
n
113
LYS
113
A
PHE
114
n
114
PHE
114
A
GLY
115
n
115
GLY
115
A
THR
116
n
116
THR
116
A
MET
117
n
117
MET
117
A
HIS
118
n
118
HIS
118
A
VAL
119
n
119
VAL
119
A
TYR
120
n
120
TYR
120
A
ALA
121
n
121
ALA
121
A
LYS
122
n
122
LYS
122
A
ALA
123
n
123
GLU
123
A
ALA
124
n
124
GLU
124
A
ALA
125
n
125
ALA
125
A
ASP
126
n
126
ASP
126
A
ALA
127
n
127
ARG
127
A
ARG
128
n
128
ARG
128
A
PRO
129
n
129
PRO
129
A
PRO
130
n
130
PRO
130
A
LEU
131
n
131
LEU
131
A
ALA
132
n
132
ALA
132
A
ALA
133
n
133
GLU
133
A
LEU
134
n
134
LEU
134
A
GLY
135
n
135
GLY
135
A
PRO
136
n
136
PRO
136
A
GLU
137
n
137
GLU
137
A
PRO
138
n
138
PRO
138
A
LEU
139
n
139
LEU
139
A
SER
140
n
140
SER
140
A
PRO
141
n
141
PRO
141
A
ALA
142
n
142
ALA
142
A
PHE
143
n
143
PHE
143
A
SER
144
n
144
SER
144
A
PRO
145
n
145
PRO
145
A
ALA
146
n
146
ALA
146
A
ALA
147
n
147
VAL
147
A
LEU
148
n
148
LEU
148
A
ALA
149
n
149
ALA
149
A
ALA
150
n
150
GLU
150
A
ARG
151
n
151
ARG
151
A
ALA
152
n
152
ALA
152
A
ALA
153
n
153
VAL
153
A
ALA
154
n
154
LYS
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
LYS
156
A
ARG
157
n
157
ARG
157
A
SER
158
n
158
SER
158
A
VAL
159
n
159
VAL
159
A
LYS
160
n
160
LYS
160
A
ALA
161
n
161
ALA
161
A
LEU
162
n
162
LEU
162
A
LEU
163
n
163
LEU
163
A
LEU
164
n
164
LEU
164
A
ASP
165
n
165
ASP
165
A
GLN
166
n
166
GLN
166
A
THR
167
n
167
THR
167
A
VAL
168
n
168
VAL
168
A
VAL
169
n
169
VAL
169
A
ALA
170
n
170
ALA
170
A
GLY
171
n
171
GLY
171
A
PHE
172
n
172
PHE
172
A
GLY
173
n
173
GLY
173
A
ASN
174
n
174
ASN
174
A
ILE
175
n
175
ILE
175
A
TYR
176
n
176
TYR
176
A
VAL
177
n
177
VAL
177
A
ASP
178
n
178
ASP
178
A
GLU
179
n
179
GLU
179
A
SER
180
n
180
SER
180
A
LEU
181
n
181
LEU
181
A
PHE
182
n
182
PHE
182
A
ARG
183
n
183
ARG
183
A
ALA
184
n
184
ALA
184
A
GLY
185
n
185
GLY
185
A
ILE
186
n
186
ILE
186
A
LEU
187
n
187
LEU
187
A
PRO
188
n
188
PRO
188
A
GLY
189
n
189
GLY
189
A
ARG
190
n
190
ARG
190
A
PRO
191
n
191
PRO
191
A
ALA
192
n
192
ALA
192
A
ALA
193
n
193
ALA
193
A
SER
194
n
194
SER
194
A
LEU
195
n
195
LEU
195
A
SER
196
n
196
SER
196
A
ALA
197
n
197
SER
197
A
ALA
198
n
198
LYS
198
A
GLU
199
n
199
GLU
199
A
ILE
200
n
200
ILE
200
A
ALA
201
n
201
GLU
201
A
ARG
202
n
202
ARG
202
A
LEU
203
n
203
LEU
203
A
HIS
204
n
204
HIS
204
A
SER
205
n
205
GLU
205
A
GLU
206
n
206
GLU
206
A
MET
207
n
207
MET
207
A
VAL
208
n
208
VAL
208
A
ALA
209
n
209
ALA
209
A
THR
210
n
210
THR
210
A
ILE
211
n
211
ILE
211
A
GLY
212
n
212
GLY
212
A
GLU
213
n
213
GLU
213
A
ALA
214
n
214
ALA
214
A
VAL
215
n
215
VAL
215
A
ALA
216
n
216
MET
216
A
SER
217
n
217
LYS
217
A
GLY
218
n
218
GLY
218
A
GLY
219
n
219
GLY
219
A
SER
220
n
220
SER
220
A
THR
221
n
221
THR
221
A
VAL
222
n
222
VAL
222
A
GLY
223
n
223
ARG
223
A
n
224
224
A
n
225
225
A
n
226
226
A
n
227
227
A
n
228
228
A
n
229
229
A
n
230
230
A
n
231
231
A
n
232
232
A
GLY
233
n
233
GLY
233
A
THR
234
n
234
THR
234
A
PHE
235
n
235
PHE
235
A
GLN
236
n
236
GLN
236
A
HIS
237
n
237
HIS
237
A
HIS
238
n
238
HIS
238
A
LEU
239
n
239
LEU
239
A
TYR
240
n
240
TYR
240
A
VAL
241
n
241
VAL
241
A
TYR
242
n
242
TYR
242
A
GLY
243
n
243
GLY
243
A
ARG
244
n
244
ARG
244
A
GLN
245
n
245
GLN
245
A
GLY
246
n
246
GLY
246
A
ASN
247
n
247
ASN
247
A
PRO
248
n
248
PRO
248
A
CYS
249
n
249
CYS
249
A
LYS
250
n
250
LYS
250
A
ARG
251
n
251
ARG
251
A
CYS
252
n
252
CYS
252
A
GLY
253
n
253
GLY
253
A
THR
254
n
254
THR
254
A
PRO
255
n
255
PRO
255
A
ILE
256
n
256
ILE
256
A
GLU
257
n
257
GLU
257
A
LYS
258
n
258
LYS
258
A
THR
259
n
259
THR
259
A
VAL
260
n
260
VAL
260
A
VAL
261
n
261
VAL
261
A
ALA
262
n
262
ALA
262
A
GLY
263
n
263
GLY
263
A
ARG
264
n
264
ARG
264
A
GLY
265
n
265
GLY
265
A
THR
266
n
266
THR
266
A
HIS
267
n
267
HIS
267
A
TYR
268
n
268
TYR
268
A
CYS
269
n
269
CYS
269
A
PRO
270
n
270
PRO
270
A
ARG
271
n
271
ARG
271
A
CYS
272
n
272
CYS
272
A
GLN
273
n
273
GLN
273
A
ALA
274
n
274
ARG
274
A
author_defined_assembly
4
tetrameric
A
CYS
249
D
SG
CYS
249
1_555
A
ZN
300
E
ZN
ZN
1_555
A
CYS
252
D
SG
CYS
252
1_555
102.2
A
CYS
249
D
SG
CYS
249
1_555
A
ZN
300
E
ZN
ZN
1_555
A
CYS
269
D
SG
CYS
269
1_555
105.1
A
CYS
252
D
SG
CYS
252
1_555
A
ZN
300
E
ZN
ZN
1_555
A
CYS
269
D
SG
CYS
269
1_555
96.8
A
CYS
249
D
SG
CYS
249
1_555
A
ZN
300
E
ZN
ZN
1_555
A
CYS
272
D
SG
CYS
272
1_555
112.3
A
CYS
252
D
SG
CYS
252
1_555
A
ZN
300
E
ZN
ZN
1_555
A
CYS
272
D
SG
CYS
272
1_555
114.0
A
CYS
269
D
SG
CYS
269
1_555
A
ZN
300
E
ZN
ZN
1_555
A
CYS
272
D
SG
CYS
272
1_555
123.5
C
AD2
17
2'-DEOXY-ADENOSINE-3'-5'-DIPHOSPHATE
B
AD2
8
DA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
27
D
N
ARG
27
A
O
VAL
97
D
O
VAL
97
A
N
VAL
96
D
N
VAL
96
A
O
TYR
108
D
O
TYR
108
A
N
HIS
36
D
N
HIS
36
A
O
MET
117
D
O
MET
117
A
O
HIS
118
D
O
HIS
118
A
N
ILE
72
D
N
ILE
72
A
O
SER
73
D
O
SER
73
A
N
LEU
62
D
N
LEU
62
A
O
LYS
63
D
O
LYS
63
A
N
GLU
56
D
N
GLU
56
A
N
GLU
257
D
N
GLU
257
A
O
TYR
268
D
O
TYR
268
1
A
CG
ARG
12
D
CG
ARG
12
1
Y
1
A
CD
ARG
12
D
CD
ARG
12
1
Y
1
A
NE
ARG
12
D
NE
ARG
12
1
Y
1
A
CZ
ARG
12
D
CZ
ARG
12
1
Y
1
A
NH1
ARG
12
D
NH1
ARG
12
1
Y
1
A
NH2
ARG
12
D
NH2
ARG
12
1
Y
1
A
CB
ARG
38
D
CB
ARG
38
1
Y
1
A
CG
ARG
38
D
CG
ARG
38
1
Y
1
A
CD
ARG
38
D
CD
ARG
38
1
Y
1
A
NE
ARG
38
D
NE
ARG
38
1
Y
1
A
CZ
ARG
38
D
CZ
ARG
38
1
Y
1
A
NH1
ARG
38
D
NH1
ARG
38
1
Y
1
A
NH2
ARG
38
D
NH2
ARG
38
1
Y
1
A
CG
GLU
41
D
CG
GLU
41
1
Y
1
A
CD
GLU
41
D
CD
GLU
41
1
Y
1
A
OE1
GLU
41
D
OE1
GLU
41
1
Y
1
A
OE2
GLU
41
D
OE2
GLU
41
1
Y
1
A
CG
ARG
68
D
CG
ARG
68
1
Y
1
A
CD
ARG
68
D
CD
ARG
68
1
Y
1
A
NE
ARG
68
D
NE
ARG
68
1
Y
1
A
CZ
ARG
68
D
CZ
ARG
68
1
Y
1
A
NH1
ARG
68
D
NH1
ARG
68
1
Y
1
A
NH2
ARG
68
D
NH2
ARG
68
1
Y
1
A
CG
ARG
80
D
CG
ARG
80
1
Y
1
A
CD
ARG
80
D
CD
ARG
80
1
Y
1
A
NE
ARG
80
D
NE
ARG
80
1
Y
1
A
CZ
ARG
80
D
CZ
ARG
80
1
Y
1
A
NH1
ARG
80
D
NH1
ARG
80
1
Y
1
A
NH2
ARG
80
D
NH2
ARG
80
1
Y
1
A
CG
GLU
123
D
CG
GLU
123
1
Y
1
A
CD
GLU
123
D
CD
GLU
123
1
Y
1
A
OE1
GLU
123
D
OE1
GLU
123
1
Y
1
A
OE2
GLU
123
D
OE2
GLU
123
1
Y
1
A
CG
GLU
124
D
CG
GLU
124
1
Y
1
A
CD
GLU
124
D
CD
GLU
124
1
Y
1
A
OE1
GLU
124
D
OE1
GLU
124
1
Y
1
A
OE2
GLU
124
D
OE2
GLU
124
1
Y
1
A
CG
ARG
127
D
CG
ARG
127
1
Y
1
A
CD
ARG
127
D
CD
ARG
127
1
Y
1
A
NE
ARG
127
D
NE
ARG
127
1
Y
1
A
CZ
ARG
127
D
CZ
ARG
127
1
Y
1
A
NH1
ARG
127
D
NH1
ARG
127
1
Y
1
A
NH2
ARG
127
D
NH2
ARG
127
1
Y
1
A
CG
GLU
133
D
CG
GLU
133
1
Y
1
A
CD
GLU
133
D
CD
GLU
133
1
Y
1
A
OE1
GLU
133
D
OE1
GLU
133
1
Y
1
A
OE2
GLU
133
D
OE2
GLU
133
1
Y
1
A
CG1
VAL
147
D
CG1
VAL
147
1
Y
1
A
CG2
VAL
147
D
CG2
VAL
147
1
Y
1
A
CG
GLU
150
D
CG
GLU
150
1
Y
1
A
CD
GLU
150
D
CD
GLU
150
1
Y
1
A
OE1
GLU
150
D
OE1
GLU
150
1
Y
1
A
OE2
GLU
150
D
OE2
GLU
150
1
Y
1
A
CG1
VAL
153
D
CG1
VAL
153
1
Y
1
A
CG2
VAL
153
D
CG2
VAL
153
1
Y
1
A
CG
LYS
154
D
CG
LYS
154
1
Y
1
A
CD
LYS
154
D
CD
LYS
154
1
Y
1
A
CE
LYS
154
D
CE
LYS
154
1
Y
1
A
NZ
LYS
154
D
NZ
LYS
154
1
Y
1
A
CB
LYS
156
D
CB
LYS
156
1
Y
1
A
CG
LYS
156
D
CG
LYS
156
1
Y
1
A
CD
LYS
156
D
CD
LYS
156
1
Y
1
A
CE
LYS
156
D
CE
LYS
156
1
Y
1
A
NZ
LYS
156
D
NZ
LYS
156
1
Y
1
A
OG
SER
197
D
OG
SER
197
1
Y
1
A
CG
LYS
198
D
CG
LYS
198
1
Y
1
A
CD
LYS
198
D
CD
LYS
198
1
Y
1
A
CE
LYS
198
D
CE
LYS
198
1
Y
1
A
NZ
LYS
198
D
NZ
LYS
198
1
Y
1
A
CG
GLU
201
D
CG
GLU
201
1
Y
1
A
CD
GLU
201
D
CD
GLU
201
1
Y
1
A
OE1
GLU
201
D
OE1
GLU
201
1
Y
1
A
OE2
GLU
201
D
OE2
GLU
201
1
Y
1
A
CD
GLU
205
D
CD
GLU
205
1
Y
1
A
OE1
GLU
205
D
OE1
GLU
205
1
Y
1
A
OE2
GLU
205
D
OE2
GLU
205
1
Y
1
A
CG
MET
216
D
CG
MET
216
1
Y
1
A
SD
MET
216
D
SD
MET
216
1
Y
1
A
CE
MET
216
D
CE
MET
216
1
Y
1
A
CD
LYS
217
D
CD
LYS
217
1
Y
1
A
CE
LYS
217
D
CE
LYS
217
1
Y
1
A
NZ
LYS
217
D
NZ
LYS
217
1
Y
1
A
CB
ARG
223
D
CB
ARG
223
1
Y
1
A
CG
ARG
223
D
CG
ARG
223
1
Y
1
A
CD
ARG
223
D
CD
ARG
223
1
Y
1
A
NE
ARG
223
D
NE
ARG
223
1
Y
1
A
CZ
ARG
223
D
CZ
ARG
223
1
Y
1
A
NH1
ARG
223
D
NH1
ARG
223
1
Y
1
A
NH2
ARG
223
D
NH2
ARG
223
1
Y
1
A
ND2
ASN
247
D
ND2
ASN
247
1
Y
1
A
CG
ARG
274
D
CG
ARG
274
1
Y
1
A
CD
ARG
274
D
CD
ARG
274
1
Y
1
A
NE
ARG
274
D
NE
ARG
274
1
Y
1
A
CZ
ARG
274
D
CZ
ARG
274
1
Y
1
A
NH1
ARG
274
D
NH1
ARG
274
1
Y
1
A
NH2
ARG
274
D
NH2
ARG
274
1
Y
1
B
DA
-1
A
DA
1
1
Y
1
B
DG
0
A
DG
2
1
Y
1
B
DG
13
A
DG
15
1
Y
1
B
DC
14
A
DC
16
1
Y
1
C
DT
10
B
DT
1
1
Y
1
C
DG
11
B
DG
2
1
Y
1
C
DC
12
B
DC
3
1
Y
1
D
DC
25
C
DC
7
1
Y
1
A
MET
1
D
MET
1
1
Y
1
A
THR
224
D
THR
224
1
Y
1
A
TYR
225
D
TYR
225
1
Y
1
A
VAL
226
D
VAL
226
1
Y
1
A
ASN
227
D
ASN
227
1
Y
1
A
THR
228
D
THR
228
1
Y
1
A
GLN
229
D
GLN
229
1
Y
1
A
GLY
230
D
GLY
230
1
Y
1
A
GLU
231
D
GLU
231
1
Y
1
A
ALA
232
D
ALA
232
1
Y
1
10.41
1.50
119.30
129.71
A
A
A
C
N
CA
TRP
PRO
PRO
30
31
31
Y
1
D
D
P
OP3
DG
DG
19
19
-0.081
0.012
1.607
1.526
N
1
A
GLU
3
-121.43
-167.72
1
A
TRP
30
-152.44
80.85
1
A
LEU
66
-99.52
-139.59
1
A
ARG
76
50.68
-125.05
1
A
ASP
110
-164.60
102.77
1
A
LEU
139
-94.60
30.92
1
A
LYS
154
-140.63
34.91
1
A
ARG
157
-44.18
159.36
1
A
THR
259
-119.86
-142.76
41.7
0.2650000
0.2090000
2.4
50
1266
18249
12356
10
67.7
RANDOM
10000
1
THROUGHOUT
2
FOURIER SYNTHESIS
1l1t
ENGH & HUBER
0.37
0.29
5.0
0.28
0.24
2.4
50
123
2585
1
475
1986
0.007
1.25
23.01
0.2740000
0.2236000
2.49
92
10
10
45.8
2.4
50
1L2B
15473
12648
1
1
0.1010000
1
8.7
2.0
84.6
0.4450000
2.4
2.49
1.9
1.9
82.5
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
MutM (Fpg) DNA End-Product Structure
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
A
GLU
3
D
GLU
3
HELX_P
A
VAL
19
D
VAL
19
1
1
17
A
TRP
30
D
TRP
30
HELX_P
A
ASN
32
D
ASN
32
5
2
3
A
ASP
39
D
ASP
39
HELX_P
A
ILE
48
D
ILE
48
1
3
10
A
SER
158
D
SER
158
HELX_P
A
ASP
165
D
ASP
165
1
6
8
A
GLY
173
D
GLY
173
HELX_P
A
ALA
184
D
ALA
184
1
7
12
A
PRO
191
D
PRO
191
HELX_P
A
LEU
195
D
LEU
195
5
8
5
A
THR
234
D
THR
234
HELX_P
A
LEU
239
D
LEU
239
5
10
6
covale
1.605
both
C
DC
16
B
O3'
DC
7
1_555
C
AD2
17
B
P1
AD2
8
1_555
metalc
2.542
A
CYS
249
D
SG
CYS
249
1_555
A
ZN
300
E
ZN
ZN
1_555
metalc
2.378
A
CYS
252
D
SG
CYS
252
1_555
A
ZN
300
E
ZN
ZN
1_555
metalc
2.387
A
CYS
269
D
SG
CYS
269
1_555
A
ZN
300
E
ZN
ZN
1_555
metalc
2.299
A
CYS
272
D
SG
CYS
272
1_555
A
ZN
300
E
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DG
4
A
N1
DG
6
1_555
D
DC
21
C
N3
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
4
A
N2
DG
6
1_555
D
DC
21
C
O2
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
4
A
O6
DG
6
1_555
D
DC
21
C
N4
DC
3
1_555
hydrog
WATSON-CRICK
B
DA
5
A
N1
DA
7
1_555
D
DT
20
C
N3
DT
2
1_555
hydrog
WATSON-CRICK
B
DA
5
A
N6
DA
7
1_555
D
DT
20
C
O4
DT
2
1_555
hydrog
WATSON-CRICK
B
DC
6
A
N3
DC
8
1_555
D
DG
19
C
N1
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
6
A
N4
DC
8
1_555
D
DG
19
C
O6
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
6
A
O2
DC
8
1_555
D
DG
19
C
N2
DG
1
1_555
hydrog
WATSON-CRICK
B
DT
8
A
N3
DT
10
1_555
C
AD2
17
B
N1
AD2
8
1_555
hydrog
WATSON-CRICK
B
DT
8
A
O4
DT
10
1_555
C
AD2
17
B
N6
AD2
8
1_555
hydrog
WATSON-CRICK
B
DG
9
A
N1
DG
11
1_555
C
DC
16
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
9
A
N2
DG
11
1_555
C
DC
16
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
9
A
O6
DG
11
1_555
C
DC
16
B
N4
DC
7
1_555
hydrog
DG-AD2 MISPAIR
B
DG
9
A
N2
DG
11
1_555
C
AD2
17
B
N1
AD2
8
1_555
hydrog
DG-DC PAIR
B
DG
10
A
N2
DG
12
1_555
C
DC
15
B
N3
DC
6
1_555
hydrog
DA-DT PAIR
B
DA
11
A
N1
DA
13
1_555
C
DT
14
B
N3
DT
5
1_555
hydrog
DC-DG PAIR
B
DC
12
A
O2
DC
14
1_555
C
DG
13
B
N2
DG
4
1_555
HYDROLASE/DNA
DNA Repair, DNA glycosylase, zinc finger, HYDROLASE-DNA COMPLEX
A
HIS
36
D
HIS
36
1
A
PRO
37
D
PRO
37
-0.42
A
PRO
129
D
PRO
129
1
A
PRO
130
D
PRO
130
0.09
1L2B
PDB
1
1L2B
1L2B
PDB
2
1L2B
1L2B
PDB
3
1L2B
1L2B
PDB
4
1L2B
-1
14
1L2B
-1
14
1L2B
B
1
1
16
10
17
1L2B
10
17
1L2B
C
2
1
8
19
25
1L2B
19
25
1L2B
D
3
1
7
1
274
1L2B
1
274
1L2B
A
4
1
274
3
5
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
23
D
ILE
23
A
ILE
28
D
ILE
28
A
THR
94
D
THR
94
A
PHE
100
D
PHE
100
A
SER
104
D
SER
104
A
ARG
109
D
ARG
109
A
ILE
34
D
ILE
34
A
HIS
36
D
HIS
36
A
THR
116
D
THR
116
A
ALA
121
D
ALA
121
A
ASP
69
D
ASP
69
A
HIS
74
D
HIS
74
A
PHE
61
D
PHE
61
A
LEU
65
D
LEU
65
A
GLY
54
D
GLY
54
A
ARG
58
D
ARG
58
A
GLU
257
D
GLU
257
A
VAL
261
D
VAL
261
A
ARG
264
D
ARG
264
A
TYR
268
D
TYR
268
BINDING SITE FOR RESIDUE ZN A 300
A
ZN
300
Software
4
A
CYS
249
D
CYS
249
4
1_555
A
CYS
252
D
CYS
252
4
1_555
A
CYS
269
D
CYS
269
4
1_555
A
CYS
272
D
CYS
272
4
1_555
19
P 21 21 21