0.028011 0.000000 0.000000 0.000000 0.024534 0.000000 0.000000 0.000000 0.023613 0.00000 0.00000 0.00000 Del Rizzo, P.A. Dunn, S.D. Bi, Y. Shilton, B.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 35.700 40.760 42.350 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N O N 114 N H N 115 N H N 116 N N N 117 S C N 118 N C N 119 N O N 120 S C N 121 N C N 122 N C N 123 N C N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C N 143 N C N 144 N C N 145 N C N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 S C N 162 N C N 163 N O N 164 N C N 165 N C N 166 N C N 167 N C N 168 N N N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C N 190 N O N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N N N 200 S C N 201 N C N 202 N O N 203 R C N 204 N O N 205 N C N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N C N 223 N O N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing US Biochemistry BICHAW 0033 0006-2960 41 6875 6884 10.1021/bi025736i 12022893 The "second stalk" of Escherichia coli ATP synthase: structure of the isolated dimerization domain. 2002 10.2210/pdb1l2p/pdb pdb_00001l2p 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2000-08-20 ADSC QUANTUM 4 Horizontally Bent Si(111) SINGLE WAVELENGTH M x-ray 1 0.99203 1.0 F1 CHESS 0.99203 SYNCHROTRON CHESS BEAMLINE F1 7058.982 ATP Synthase B Chain 3.6.3.34 Dimerization Domain (residues 62-122) 1 man polymer 18.015 water 54 nat water no no TDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK TDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli MM294 Plasmid pSD149 1 2.18 43.64 VAPOR DIFFUSION, SITTING DROP 5.0 30% ISOPROPANOL, 45% 2-METHYL-2,4-PENTANEDIOL, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 18.0K 291.0 exptl_crystal_grow chem_comp_atom chem_comp_bond database_2 pdbx_database_remark repository Initial release Version format compliance Version format compliance Experimental preparation Advisory Data collection Database references 1 0 2002-06-05 1 1 2008-04-28 1 2 2011-07-13 1 3 2018-01-31 1 4 2024-02-14 _exptl_crystal_grow.temp _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_remark.text BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). The biological unit is a dimer. However, the biological dimer is not contained in the crystal. The dimer model cannot be generated by a simple coordinate transformation of the crystal structure. The biological dimer can, however, be modelled based on the surface properties of the crystal structure, and on solution small-angle X-ray scattering data. RCSB Y RCSB 2002-02-22 REL REL HOH water HOH 123 2 HOH HOH 123 A HOH 124 2 HOH HOH 124 A HOH 125 2 HOH HOH 125 A HOH 126 2 HOH HOH 126 A HOH 127 2 HOH HOH 127 A HOH 128 2 HOH HOH 128 A HOH 129 2 HOH HOH 129 A HOH 130 2 HOH HOH 130 A HOH 131 2 HOH HOH 131 A HOH 132 2 HOH HOH 132 A HOH 133 2 HOH HOH 133 A HOH 134 2 HOH HOH 134 A HOH 135 2 HOH HOH 135 A HOH 136 2 HOH HOH 136 A HOH 137 2 HOH HOH 137 A HOH 138 2 HOH HOH 138 A HOH 139 2 HOH HOH 139 A HOH 140 2 HOH HOH 140 A HOH 141 2 HOH HOH 141 A HOH 142 2 HOH HOH 142 A HOH 143 2 HOH HOH 143 A HOH 144 2 HOH HOH 144 A HOH 145 2 HOH HOH 145 A HOH 146 2 HOH HOH 146 A HOH 147 2 HOH HOH 147 A HOH 148 2 HOH HOH 148 A HOH 149 2 HOH HOH 149 A HOH 150 2 HOH HOH 150 A HOH 151 2 HOH HOH 151 A HOH 152 2 HOH HOH 152 A HOH 153 2 HOH HOH 153 A HOH 154 2 HOH HOH 154 A HOH 155 2 HOH HOH 155 A HOH 156 2 HOH HOH 156 A HOH 157 2 HOH HOH 157 A HOH 158 2 HOH HOH 158 A HOH 159 2 HOH HOH 159 A HOH 160 2 HOH HOH 160 A HOH 161 2 HOH HOH 161 A HOH 162 2 HOH HOH 162 A HOH 163 2 HOH HOH 163 A HOH 164 2 HOH HOH 164 A HOH 165 2 HOH HOH 165 A HOH 166 2 HOH HOH 166 A HOH 167 2 HOH HOH 167 A HOH 168 2 HOH HOH 168 A HOH 169 2 HOH HOH 169 A HOH 170 2 HOH HOH 170 A HOH 171 2 HOH HOH 171 A HOH 172 2 HOH HOH 172 A HOH 173 2 HOH HOH 173 A HOH 174 2 HOH HOH 174 A HOH 175 2 HOH HOH 175 A HOH 176 2 HOH HOH 176 A THR 62 n 1 THR 62 A ASP 63 n 2 ASP 63 A GLN 64 n 3 GLN 64 A LEU 65 n 4 LEU 65 A LYS 66 n 5 LYS 66 A LYS 67 n 6 LYS 67 A ALA 68 n 7 ALA 68 A LYS 69 n 8 LYS 69 A ALA 70 n 9 ALA 70 A GLU 71 n 10 GLU 71 A ALA 72 n 11 ALA 72 A GLN 73 n 12 GLN 73 A VAL 74 n 13 VAL 74 A ILE 75 n 14 ILE 75 A ILE 76 n 15 ILE 76 A GLU 77 n 16 GLU 77 A GLN 78 n 17 GLN 78 A ALA 79 n 18 ALA 79 A ASN 80 n 19 ASN 80 A LYS 81 n 20 LYS 81 A ARG 82 n 21 ARG 82 A ARG 83 n 22 ARG 83 A SER 84 n 23 SER 84 A GLN 85 n 24 GLN 85 A ILE 86 n 25 ILE 86 A LEU 87 n 26 LEU 87 A ASP 88 n 27 ASP 88 A GLU 89 n 28 GLU 89 A ALA 90 n 29 ALA 90 A LYS 91 n 30 LYS 91 A ALA 92 n 31 ALA 92 A GLU 93 n 32 GLU 93 A ALA 94 n 33 ALA 94 A GLU 95 n 34 GLU 95 A GLN 96 n 35 GLN 96 A GLU 97 n 36 GLU 97 A ARG 98 n 37 ARG 98 A THR 99 n 38 THR 99 A LYS 100 n 39 LYS 100 A ILE 101 n 40 ILE 101 A VAL 102 n 41 VAL 102 A ALA 103 n 42 ALA 103 A GLN 104 n 43 GLN 104 A ALA 105 n 44 ALA 105 A GLN 106 n 45 GLN 106 A ALA 107 n 46 ALA 107 A GLU 108 n 47 GLU 108 A ILE 109 n 48 ILE 109 A GLU 110 n 49 GLU 110 A ALA 111 n 50 ALA 111 A GLU 112 n 51 GLU 112 A ARG 113 n 52 ARG 113 A LYS 114 n 53 LYS 114 A ARG 115 n 54 ARG 115 A ALA 116 n 55 ALA 116 A ARG 117 n 56 ARG 117 A GLU 118 n 57 GLU 118 A GLU 119 n 58 GLU 119 A LEU 120 n 59 LEU 120 A ARG 121 n 60 ARG 121 A LYS 122 n 61 LYS 122 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A OD1 OD1 ASN ASN 80 80 2.15 1_555 2_555 PROTEIN_REP.PARAM PROTEIN.TOP WATER.PARAM WATER.TOP 29.0 5.81 0.00 0.00 3.43 0.00 -9.24 0.3130000 0.010 0.2820000 0.2850000 0.2850000 1.55 29.37 972 9429 9325 10.4 98.9 RANDOM 682817.73 682817.73 0.000000 1 RESTRAINED THROUGHOUT 0.0 MIR Engh & Huber FLAT MODEL 70.0756 0.428013 0.28 0.24 5.00 0.16 0.15 1.55 29.37 54 548 0 0 494 0.005 0.7 13.1 0.63 1.36 1.50 1.90 2.00 3.36 2.00 5.50 2.50 0.3360000 0.028 0.2920000 1.65 147 1295 1442 6 10.2 93.8 23.2 1.55 30.0 1L2P 9429 9325 0.0 -3.0 0.0270000 1 25.1 5.4 98.9 0.1170000 1.55 1.61 835 4.3 91.8 phasing MLPHARE refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK ATP Synthase b Subunit Dimerization Domain 1 N N 2 N N A THR 62 A THR 1 HELX_P A ARG 121 A ARG 60 1 1 60 HYDROLASE alpha helix, HYDROLASE ATPF_ECOLI UNP 1 62 P0ABA0 TDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK 62 122 1L2P 62 122 P0ABA0 A 1 1 61 18 P 21 21 2