0.016502
0.009527
0.000000
0.000000
0.019054
0.000000
0.000000
0.000000
0.010320
0.000000
0.000000
0.000000
RESIDUES 162 - 164 IN WILD-TYPE AND ALL MUTANT LYSOZYMES ARE EXTREMELY MOBILE. THUS THE COORDINATES FOR THESE RESIDUES ARE VERY UNRELIABLE.
Daopin, S.
Matthews, B.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
60.600
60.600
96.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
30
7142
7153
10.1021/bi00243a015
1854726
Contributions of engineered surface salt bridges to the stability of T4 lysozyme determined by directed mutagenesis.
1991
To be Published
0353
The Structural and Thermodynamic Consequences of Burying a Charged Residue within the Hydrophobic Core of T4 Lysozyme
To be Published
0353
Multiple Stabilizing Alanine Replacements within Alpha-Helix 126-134 of T4 Lysozyme Have Independent, Additive Effects on Both Structure and Stability
To be Published
0353
Tolerance of T4 Lysozyme to Proline Substitutions within the Long Interdomain Alpha-Helix Illustrates the Adaptability of Proteins to Potentially Destabilizing Lesions
To be Published
0353
Tolerance of T4 Lysozyme to Multiple Xaa (Right Arrow) Ala Substitutions: A Polyalanine Alpha-Helix Containing Ten Consecutive Alanines
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
221
873
Cumulative Site-Directed Charge-Change Replacements in Bacteriophage T4 Lysozyme Suggest that Long-Range Electrostatic Interactions Contribute Little to Protein Stability
1991
US
Biochemistry
BICHAW
0033
0006-2960
30
9816
Analysis of the Interaction between Charged Side Chains and the Alpha-Helix Dipole Using Designed Thermostable Mutants of Phage T4 Lysozyme
1991
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
221
647
Structural and Thermodynamic Analysis of the Packing of Two Alpha-Helices in Bacteriophage T4 Lysozyme
1991
US
Biochemistry
BICHAW
0033
0006-2960
30
2012
Toward a Simplification of the Protein Folding Problem: A Stabilizing Polyalanine Alpha-Helix Engineered in T4 Lysozyme
1991
US
Biochemistry
BICHAW
0033
0006-2960
29
2592
Structure of a Thermostable Disulfide-Bridge Mutant of Phage T4 Lysozyme Shows that an Engineered Crosslink in a Flexible Region Does not Increase the Rigidity of the Folded Protein
1990
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
264
16059
Structural Studies of Mutants of T4 Lysozyme that Alter Hydrophobic Stabilization
1989
US
Biochemistry
BICHAW
0033
0006-2960
28
3793
High-Resolution Structure of the Temperature-Sensitive Mutant of Phage Lysozyme, Arg 96 (Right Arrow) His
1989
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
210
181
Contributions of Left-Handed Helical Residues to the Structure and Stability of Bacteriophage T4 Lysozyme
1989
UK
Nature
NATUAS
0006
0028-0836
334
406
Hydrophobic Stabilization in T4 Lysozyme Determined Directly by Multiple Substitutions of Ile 3
1988
UK
Nature
NATUAS
0006
0028-0836
336
651
Enhanced Protein Thermostability from Designed Mutations that Interact with Alpha-Helix Dipoles
1988
US
Science
SCIEAS
0038
0036-8075
239
631
Replacements of Pro86 in Phage T4 Lysozyme Extend an Alpha-Helix But Do not Alter Protein Stability
1988
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
84
6663
Enhanced Protein Thermostability from Site-Directed Mutations that Decrease the Entropy of Unfolding
1987
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
262
16858
Structural Analysis of the Temperature-Sensitive Mutant of Bacteriophage T4 Lysozyme, Glycine 156 (Right Arrow) Aspartic Acid
1987
UK
Nature
NATUAS
0006
0028-0836
330
41
Contributions of Hydrogen Bonds of Thr 157 to the Thermodynamic Stability of Phage T4 Lysozyme
1987
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
197
315
Structural Studies of Mutants of the Lysozyme of Bacteriophage T4. The Temperature-Sensitive Mutant Protein Thr157 (Right Arrow) Ile
1987
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
193
189
Structure of Bacteriophage T4 Lysozyme Refined at 1.7 Angstroms Resolution
1987
US
Biochemistry
BICHAW
0033
0006-2960
26
3754
Temperature-Sensitive Mutations of Bacteriophage T4 Lysozyme Occur at Sites with Low Mobility and Low Solvent Accessibility in the Folded Protein
1987
UK
Nature
NATUAS
0006
0028-0836
290
334
Common Precursor of Lysozymes of Hen Egg-White and Bacteriophage T4
1981
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
147
523
Crystallographic Determination of the Mode of Binding of Oligosaccharides to T4 Bacteriophage Lysozyme. Implications for the Mechanism of Catalysis
1981
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
147
545
Relation between Hen Egg White Lysozyme and Bacteriophage T4 Lysozyme. Evolutionary Implications
1981
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
118
81
Structure of the Lysozyme from Bacteriophage T4, an Electron Density Map at 2.4 Angstroms Resolution
1978
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
75
265
Atomic Coordinates for T4 Phage Lysozyme
1977
NE
Biochim.Biophys.Acta
BBACAQ
0113
0006-3002
405
442
Comparison of the Predicted and Observed Secondary Structure of T4 Phage Lysozyme
1975
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
71
4178
The Three Dimensional Structure of the Lysozyme from Bacteriophage T4
1974
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
78
575
Crystallographic Data for Lysozyme from Bacteriophage T4
1973
To be Published
0353
10.2210/pdb1l41/pdb
pdb_00001l41
The deposited model is shifted from correct position as rigid body.
0.866025
0.500000
0.000000
-0.500000
0.866025
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
101
298
1
Kodak No-Screen X-ray film
FILM
OSCILLATION CAMERA
graphite
SINGLE WAVELENGTH
M
x-ray
1.5418
1
1.0
ROTATING ANODE
Cu
ELLIOTT GX-21
40
18681.340
T4 LYSOZYME
3.2.1.17
1
man
polymer
18.015
water
152
nat
water
no
no
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAHLKPVYDSLDAVRRAALINMVFQMGETGVDGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAHLKPVYDSLDAVRRAALINMVFQMGETGVDGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
sample
10665
Enterobacteria phage T4
PLASMID
M13
2.75
55.26
pdbx_database_status
struct_conf
struct_conf_type
database_PDB_caveat
diffrn
diffrn_detector
diffrn_radiation
diffrn_source
pdbx_database_status
software
struct_ref_seq_dif
diffrn_detector
diffrn_source
atom_site
atom_sites
citation_author
database_2
database_PDB_matrix
entity_src_gen
pdbx_database_remark
pdbx_validate_rmsd_angle
pdbx_validate_torsion
chem_comp_atom
chem_comp_bond
repository
Initial release
ORTHOGONAL X,Y,Z AXES WERE REALIGNED FROM A*,B,C TO A,B*,C CRYSTALLOGRAPHIC DIRECTIONS
repository
Remediation
Version format compliance
Advisory
Version format compliance
Derived calculations
Other
Advisory
Data collection
Database references
Other
Refinement description
Data collection
Advisory
Atomic model
Data collection
Database references
Other
Source and taxonomy
Data collection
1
0
1991-10-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
1
4
2020-07-22
1
5
2021-06-30
2
0
2022-11-23
2
1
2024-05-22
_pdbx_database_status.process_site
_diffrn.ambient_pressure
_diffrn.ambient_temp
_diffrn_radiation.monochromator
_diffrn_radiation.pdbx_diffrn_protocol
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l
_diffrn_radiation.pdbx_wavelength_list
_pdbx_database_status.status_code_sf
_struct_ref_seq_dif.details
_diffrn_detector.detector
_diffrn_source.source
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_sites.fract_transf_matrix[1][1]
_atom_sites.fract_transf_matrix[1][2]
_atom_sites.fract_transf_matrix[2][1]
_atom_sites.fract_transf_matrix[2][2]
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_database_PDB_matrix.origx[1][1]
_database_PDB_matrix.origx[1][2]
_database_PDB_matrix.origx[2][1]
_database_PDB_matrix.origx[2][2]
_entity_src_gen.pdbx_gene_src_organ
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
SHEET
THERE ARE SEVERAL SUBTLE ASPECTS OF THE SECONDARY STRUCTURE
OF THIS MOLECULE WHICH CANNOT CONVENIENTLY BE REPRESENTED
IN THE HELIX AND SHEET RECORDS BELOW. THESE ASPECTS
INFLUENCE THE REPRESENTATION OF HELIX 6 AND STRAND 3 OF
SHEET *S1*. THE PAPER CITED AS REFERENCE 26 ABOVE SHOULD
BE CONSULTED FOR THESE SUBTLETIES.
Y
BNL
1991-01-28
REL
REL
HOH
water
HOH
166
2
HOH
HOH
166
A
HOH
167
2
HOH
HOH
167
A
HOH
168
2
HOH
HOH
168
A
HOH
169
2
HOH
HOH
169
A
HOH
170
2
HOH
HOH
170
A
HOH
171
2
HOH
HOH
171
A
HOH
172
2
HOH
HOH
172
A
HOH
173
2
HOH
HOH
173
A
HOH
175
2
HOH
HOH
175
A
HOH
176
2
HOH
HOH
176
A
HOH
178
2
HOH
HOH
178
A
HOH
179
2
HOH
HOH
179
A
HOH
180
2
HOH
HOH
180
A
HOH
181
2
HOH
HOH
181
A
HOH
182
2
HOH
HOH
182
A
HOH
184
2
HOH
HOH
184
A
HOH
185
2
HOH
HOH
185
A
HOH
186
2
HOH
HOH
186
A
HOH
187
2
HOH
HOH
187
A
HOH
188
2
HOH
HOH
188
A
HOH
190
2
HOH
HOH
190
A
HOH
191
2
HOH
HOH
191
A
HOH
192
2
HOH
HOH
192
A
HOH
194
2
HOH
HOH
194
A
HOH
195
2
HOH
HOH
195
A
HOH
197
2
HOH
HOH
197
A
HOH
201
2
HOH
HOH
201
A
HOH
203
2
HOH
HOH
203
A
HOH
204
2
HOH
HOH
204
A
HOH
206
2
HOH
HOH
206
A
HOH
207
2
HOH
HOH
207
A
HOH
208
2
HOH
HOH
208
A
HOH
209
2
HOH
HOH
209
A
HOH
211
2
HOH
HOH
211
A
HOH
212
2
HOH
HOH
212
A
HOH
213
2
HOH
HOH
213
A
HOH
214
2
HOH
HOH
214
A
HOH
215
2
HOH
HOH
215
A
HOH
216
2
HOH
HOH
216
A
HOH
217
2
HOH
HOH
217
A
HOH
218
2
HOH
HOH
218
A
HOH
219
2
HOH
HOH
219
A
HOH
220
2
HOH
HOH
220
A
HOH
221
2
HOH
HOH
221
A
HOH
222
2
HOH
HOH
222
A
HOH
223
2
HOH
HOH
223
A
HOH
227
2
HOH
HOH
227
A
HOH
229
2
HOH
HOH
229
A
HOH
230
2
HOH
HOH
230
A
HOH
232
2
HOH
HOH
232
A
HOH
233
2
HOH
HOH
233
A
HOH
235
2
HOH
HOH
235
A
HOH
237
2
HOH
HOH
237
A
HOH
238
2
HOH
HOH
238
A
HOH
239
2
HOH
HOH
239
A
HOH
240
2
HOH
HOH
240
A
HOH
241
2
HOH
HOH
241
A
HOH
242
2
HOH
HOH
242
A
HOH
243
2
HOH
HOH
243
A
HOH
244
2
HOH
HOH
244
A
HOH
246
2
HOH
HOH
246
A
HOH
247
2
HOH
HOH
247
A
HOH
250
2
HOH
HOH
250
A
HOH
252
2
HOH
HOH
252
A
HOH
256
2
HOH
HOH
256
A
HOH
260
2
HOH
HOH
260
A
HOH
261
2
HOH
HOH
261
A
HOH
265
2
HOH
HOH
265
A
HOH
266
2
HOH
HOH
266
A
HOH
268
2
HOH
HOH
268
A
HOH
269
2
HOH
HOH
269
A
HOH
270
2
HOH
HOH
270
A
HOH
273
2
HOH
HOH
273
A
HOH
274
2
HOH
HOH
274
A
HOH
275
2
HOH
HOH
275
A
HOH
277
2
HOH
HOH
277
A
HOH
280
2
HOH
HOH
280
A
HOH
282
2
HOH
HOH
282
A
HOH
287
2
HOH
HOH
287
A
HOH
290
2
HOH
HOH
290
A
HOH
295
2
HOH
HOH
295
A
HOH
297
2
HOH
HOH
297
A
HOH
298
2
HOH
HOH
298
A
HOH
303
2
HOH
HOH
303
A
HOH
304
2
HOH
HOH
304
A
HOH
312
2
HOH
HOH
312
A
HOH
314
2
HOH
HOH
314
A
HOH
315
2
HOH
HOH
315
A
HOH
316
2
HOH
HOH
316
A
HOH
317
2
HOH
HOH
317
A
HOH
318
2
HOH
HOH
318
A
HOH
319
2
HOH
HOH
319
A
HOH
321
2
HOH
HOH
321
A
HOH
324
2
HOH
HOH
324
A
HOH
326
2
HOH
HOH
326
A
HOH
327
2
HOH
HOH
327
A
HOH
333
2
HOH
HOH
333
A
HOH
338
2
HOH
HOH
338
A
HOH
340
2
HOH
HOH
340
A
HOH
348
2
HOH
HOH
348
A
HOH
351
2
HOH
HOH
351
A
HOH
352
2
HOH
HOH
352
A
HOH
353
2
HOH
HOH
353
A
HOH
355
2
HOH
HOH
355
A
HOH
356
2
HOH
HOH
356
A
HOH
361
2
HOH
HOH
361
A
HOH
363
2
HOH
HOH
363
A
HOH
364
2
HOH
HOH
364
A
HOH
401
2
HOH
HOH
401
A
HOH
402
2
HOH
HOH
402
A
HOH
403
2
HOH
HOH
403
A
HOH
404
2
HOH
HOH
404
A
HOH
405
2
HOH
HOH
405
A
HOH
407
2
HOH
HOH
407
A
HOH
408
2
HOH
HOH
408
A
HOH
411
2
HOH
HOH
411
A
HOH
412
2
HOH
HOH
412
A
HOH
414
2
HOH
HOH
414
A
HOH
415
2
HOH
HOH
415
A
HOH
417
2
HOH
HOH
417
A
HOH
418
2
HOH
HOH
418
A
HOH
419
2
HOH
HOH
419
A
HOH
420
2
HOH
HOH
420
A
HOH
517
2
HOH
HOH
517
A
HOH
518
2
HOH
HOH
518
A
HOH
519
2
HOH
HOH
519
A
HOH
520
2
HOH
HOH
520
A
HOH
523
2
HOH
HOH
523
A
HOH
524
2
HOH
HOH
524
A
HOH
525
2
HOH
HOH
525
A
HOH
526
2
HOH
HOH
526
A
HOH
527
2
HOH
HOH
527
A
HOH
528
2
HOH
HOH
528
A
HOH
529
2
HOH
HOH
529
A
HOH
530
2
HOH
HOH
530
A
HOH
531
2
HOH
HOH
531
A
HOH
532
2
HOH
HOH
532
A
HOH
533
2
HOH
HOH
533
A
HOH
534
2
HOH
HOH
534
A
HOH
537
2
HOH
HOH
537
A
HOH
538
2
HOH
HOH
538
A
HOH
539
2
HOH
HOH
539
A
HOH
540
2
HOH
HOH
540
A
HOH
541
2
HOH
HOH
541
A
HOH
542
2
HOH
HOH
542
A
HOH
543
2
HOH
HOH
543
A
HOH
544
2
HOH
HOH
544
A
HOH
545
2
HOH
HOH
545
A
HOH
546
2
HOH
HOH
546
A
HOH
547
2
HOH
HOH
547
A
HOH
548
2
HOH
HOH
548
A
HOH
549
2
HOH
HOH
549
A
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
GLU
5
n
5
GLU
5
A
MET
6
n
6
MET
6
A
LEU
7
n
7
LEU
7
A
ARG
8
n
8
ARG
8
A
ILE
9
n
9
ILE
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
ILE
17
n
17
ILE
17
A
TYR
18
n
18
TYR
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
THR
21
n
21
THR
21
A
GLU
22
n
22
GLU
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
THR
26
n
26
THR
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
GLY
30
n
30
GLY
30
A
HIS
31
n
31
HIS
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
THR
34
n
34
THR
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
ASN
40
n
40
ASN
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
SER
44
n
44
SER
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
ASN
53
n
53
ASN
53
A
THR
54
n
54
THR
54
A
ASN
55
n
55
ASN
55
A
GLY
56
n
56
GLY
56
A
VAL
57
n
57
VAL
57
A
ILE
58
n
58
ILE
58
A
THR
59
n
59
THR
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
PHE
67
n
67
PHE
67
A
ASN
68
n
68
ASN
68
A
GLN
69
n
69
GLN
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
ARG
76
n
76
ARG
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
LEU
79
n
79
LEU
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
ALA
82
n
82
ALA
82
A
HIS
83
n
83
HIS
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
PRO
86
n
86
PRO
86
A
VAL
87
n
87
VAL
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
ILE
100
n
100
ILE
100
A
ASN
101
n
101
ASN
101
A
MET
102
n
102
MET
102
A
VAL
103
n
103
VAL
103
A
PHE
104
n
104
PHE
104
A
GLN
105
n
105
GLN
105
A
MET
106
n
106
MET
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
VAL
111
n
111
VAL
111
A
ASP
112
n
112
ASP
112
A
GLY
113
n
113
GLY
113
A
PHE
114
n
114
PHE
114
A
THR
115
n
115
THR
115
A
ASN
116
n
116
ASN
116
A
SER
117
n
117
SER
117
A
LEU
118
n
118
LEU
118
A
ARG
119
n
119
ARG
119
A
MET
120
n
120
MET
120
A
LEU
121
n
121
LEU
121
A
GLN
122
n
122
GLN
122
A
GLN
123
n
123
GLN
123
A
LYS
124
n
124
LYS
124
A
ARG
125
n
125
ARG
125
A
TRP
126
n
126
TRP
126
A
ASP
127
n
127
ASP
127
A
GLU
128
n
128
GLU
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
LYS
135
n
135
LYS
135
A
SER
136
n
136
SER
136
A
ARG
137
n
137
ARG
137
A
TRP
138
n
138
TRP
138
A
TYR
139
n
139
TYR
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
THR
142
n
142
THR
142
A
PRO
143
n
143
PRO
143
A
ASN
144
n
144
ASN
144
A
ARG
145
n
145
ARG
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
ARG
148
n
148
ARG
148
A
VAL
149
n
149
VAL
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
THR
152
n
152
THR
152
A
PHE
153
n
153
PHE
153
A
ARG
154
n
154
ARG
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
TRP
158
n
158
TRP
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
ALA
160
A
TYR
161
n
161
TYR
161
A
LYS
162
n
162
LYS
162
A
ASN
163
n
163
ASN
163
A
LEU
164
n
164
LEU
164
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
58
A
N
ILE
58
A
O
LEU
15
A
O
LEU
15
A
N
ASP
20
A
N
ASP
20
A
O
TYR
24
A
O
TYR
24
A
O
ILE
27
A
O
ILE
27
A
N
HIS
31
A
N
HIS
31
1
3.46
0.50
120.30
123.76
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
8
8
8
N
1
5.49
0.50
120.30
125.79
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
14
14
14
N
1
-4.74
0.50
120.30
115.56
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
14
14
14
N
1
6.85
0.90
118.30
125.15
A
A
A
CB
CG
OD1
ASP
ASP
ASP
47
47
47
N
1
-9.51
0.90
118.30
108.79
A
A
A
CB
CG
OD2
ASP
ASP
ASP
47
47
47
N
1
6.18
0.90
118.30
124.48
A
A
A
CB
CG
OD1
ASP
ASP
ASP
70
70
70
N
1
5.78
0.50
120.30
126.08
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
80
80
80
N
1
-4.54
0.50
120.30
115.76
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
80
80
80
N
1
12.87
2.00
110.40
123.27
A
A
A
CB
CA
C
ASP
ASP
ASP
112
112
112
N
1
3.80
0.50
120.30
124.10
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
119
119
119
N
1
-3.16
0.50
120.30
117.14
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
119
119
119
N
1
6.17
0.90
118.30
124.47
A
A
A
CB
CG
OD1
ASP
ASP
ASP
127
127
127
N
1
-13.70
1.80
110.60
96.90
A
A
A
N
CA
CB
ASN
ASN
ASN
163
163
163
N
1
A
A
NZ
O
LYS
HOH
147
524
2.12
1_555
4_655
1
A
PHE
114
-97.46
40.69
RESIDUES 162 - 164 IN WILD-TYPE AND ALL MUTANT LYSOZYMES
ARE EXTREMELY MOBILE. THUS THE COORDINATES FOR THESE
RESIDUES ARE VERY UNRELIABLE.
0.1570000
1.75
6.0
1
1.75
6.0
152
1465
0
0
1313
0.018
2.37
refinement
TNT
data scaling
AGROVATA / ROTAVATA
CONTRIBUTIONS OF ENGINEERED SURFACE SALT BRIDGES TO THE STABILITY OF T4 LYSOZYME DETERMINED BY DIRECTED MUTAGENESIS
1
N
N
2
N
N
A
ILE
3
A
ILE
3
HELX_P
A
GLU
11
A
GLU
11
1
H1
9
A
LEU
39
A
LEU
39
HELX_P
A
ILE
50
A
ILE
50
1
H2
12
A
LYS
60
A
LYS
60
HELX_P
A
ARG
80
A
ARG
80
1
H3
21
A
ALA
82
A
ALA
82
HELX_P
A
SER
90
A
SER
90
1
H4
9
A
ALA
93
A
ALA
93
HELX_P
A
MET
106
A
MET
106
1
H5
14
A
GLU
108
A
GLU
108
HELX_P
A
GLY
113
A
GLY
113
1
H6
6
A
THR
115
A
THR
115
HELX_P
A
GLN
123
A
GLN
123
1
H7
9
A
TRP
126
A
TRP
126
HELX_P
A
ALA
134
A
ALA
134
1
H8
9
A
ARG
137
A
ARG
137
HELX_P
A
GLN
141
A
GLN
141
1
H9
5
A
PRO
143
A
PRO
143
HELX_P
A
THR
155
A
THR
155
1
H10
13
HYDROLASE (O-GLYCOSYL)
HYDROLASE (O-GLYCOSYL)
LYS_BPT4
UNP
1
1
P00720
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
1
164
1L41
1
164
P00720
A
1
1
164
1
CYS
conflict
THR
54
1L41
A
P00720
UNP
54
54
1
LYS
conflict
HIS
83
1L41
A
P00720
UNP
83
83
1
CYS
conflict
ALA
97
1L41
A
P00720
UNP
97
97
1
ALA
conflict
ASP
112
1L41
A
P00720
UNP
112
112
4
anti-parallel
anti-parallel
anti-parallel
A
GLY
56
A
GLY
56
A
ILE
58
A
ILE
58
A
ARG
14
A
ARG
14
A
ASP
20
A
ASP
20
A
TYR
24
A
TYR
24
A
ILE
27
A
ILE
27
A
HIS
31
A
HIS
31
A
LEU
33
A
LEU
33
154
P 32 2 1