0.015136 0.000000 0.005682 0.000000 0.042061 0.000000 0.000000 0.000000 0.014470 0.00000 0.00000 0.00000 Thorpe, J.H. Gale, B.C. Teixeira, S.C.M. Cardin, C.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 110.58 90.00 66.067 23.775 73.816 Ca 2 40.078 CALCIUM ION non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Na 1 22.990 SODIUM ION non-polymer N 1 N CA N 2 N O N 3 N P N 4 N O N 5 N O N 6 N O N 7 N C N 8 R C N 9 N O N 10 S C N 11 N O N 12 N C N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 N C N 49 R C N 50 N N N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N C N 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N P N 74 N O N 75 N O N 76 N O N 77 N C N 78 R C N 79 N O N 80 S C N 81 N O N 82 N C N 83 R C Y 84 N N Y 85 N C Y 86 N N Y 87 N C N 88 N C N 89 N O N 90 N N N 91 N C N 92 N N N 93 N N Y 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N O N 110 N P N 111 N O N 112 N O N 113 N O N 114 N C N 115 R C N 116 N O N 117 S C N 118 N O N 119 N C N 120 R C N 121 N N N 122 N C N 123 N O N 124 N N N 125 N C N 126 N O N 127 N C N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H N 148 N NA N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 327 97 109 10.1016/S0022-2836(03)00088-3 12614611 Conformational and Hydration Effects of Site-selective Sodium, Calcium and Strontium Ion Binding to the DNA Holliday Junction Structure d(TCGGTACCGA)4 2003 10.2210/pdb1l4j/pdb pdb_00001l4j 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-12-08 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.073 1.0 X11 EMBL/DESY, HAMBURG 1.073 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 section of Holliday junction 3045.005 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3' 4 syn polymer 40.078 CALCIUM ION 4 syn non-polymer 22.990 SODIUM ION 2 syn non-polymer 18.015 water 168 nat water no no (DT)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DA) TCGGTACCGA A,B,C,D polydeoxyribonucleotide n n n n n n n n n n 1 2.14 42.47 VAPOR DIFFUSION, SITTING DROP 7.0 Sodium Cacodylate, Calcium Chloride, MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K 290 Sodium Cacodylate 1 Calcium Chloride 1 MPD 1 2.322 1 20 A 1 D 40 7.245 A_DT1:DA40_D 1 -15.088 0.007 0.151 -0.107 6.071 1 19 A 2 D 39 -2.720 A_DC2:DG39_D 2 -2.547 0.022 0.114 -0.211 2.996 1 19 A 3 D 38 -3.373 A_DG3:DC38_D 3 -4.062 -0.354 0.310 -0.180 -0.105 1 19 A 4 D 37 -0.978 A_DG4:DC37_D 4 -15.895 -0.297 0.253 -0.234 -4.067 1 20 A 5 B 16 -2.058 A_DT5:DA16_B 5 -12.756 -0.056 0.123 -0.113 13.145 1 20 A 6 B 15 -4.047 A_DA6:DT15_B 6 -7.337 0.354 0.232 -0.195 0.698 1 19 A 7 B 14 -2.823 A_DC7:DG14_B 7 -18.295 0.205 0.138 -0.339 -9.739 1 19 A 8 B 13 -3.163 A_DC8:DG13_B 8 3.151 0.117 0.298 -0.144 -0.751 1 19 A 9 B 12 -2.932 A_DG9:DC12_B 9 -1.256 -0.168 0.066 -0.170 5.376 1 20 A 10 B 11 -0.688 A_DA10:DT11_B 10 -13.600 0.156 0.025 -0.224 -3.228 1 20 C 21 B 20 1.280 C_DT21:DA20_B 11 -13.913 0.061 0.027 -0.026 2.447 1 19 C 22 B 19 -1.864 C_DC22:DG19_B 12 -1.809 0.084 0.186 -0.181 2.430 1 19 C 23 B 18 -1.759 C_DG23:DC18_B 13 -4.029 -0.190 0.312 -0.139 1.435 1 19 C 24 B 17 2.351 C_DG24:DC17_B 14 -13.004 -0.338 0.231 -0.244 -2.827 1 20 C 25 D 36 0.328 C_DT25:DA36_D 15 -10.526 -0.275 -0.086 -0.084 11.941 1 20 C 26 D 35 -3.294 C_DA26:DT35_D 16 -12.912 0.254 0.142 -0.141 -1.524 1 19 C 27 D 34 -2.210 C_DC27:DG34_D 17 -19.598 0.218 0.218 -0.221 -9.269 1 19 C 28 D 33 -0.928 C_DC28:DG33_D 18 5.578 0.302 0.328 -0.230 -2.805 1 19 C 29 D 32 -2.547 C_DG29:DC32_D 19 3.290 -0.090 0.056 -0.165 0.134 1 20 C 30 D 31 4.012 C_DA30:DT31_D 20 -18.541 -0.003 0.146 -0.198 3.855 39.946 A A 1 2 10.187 D D 40 39 3.494 6.906 -0.023 2.675 AA_DT1DC2:DG39DA40_DD 1 5.537 -8.167 38.992 3.012 0.758 3.287 38.555 A A 2 3 -1.852 D D 39 38 3.362 -1.222 0.459 2.949 AA_DC2DG3:DC38DG39_DD 2 1.808 -2.740 38.495 4.620 -0.468 3.820 43.734 A A 3 4 5.093 D D 38 37 3.642 3.783 -0.178 2.337 AA_DG3DG4:DC37DC38_DD 3 -4.865 6.551 43.318 2.723 -0.294 3.264 30.362 A A 4 5 4.470 D B 37 16 3.303 2.339 -0.317 -0.363 AA_DG4DT5:DA16DC37_BD 4 0.164 -0.314 30.273 -1.166 0.639 3.230 34.270 A A 5 6 8.062 B B 16 15 3.064 4.735 -0.037 1.447 AA_DT5DA6:DT15DA16_BB 5 -0.934 1.590 33.938 1.736 -0.079 3.573 41.068 A A 6 7 -7.123 B B 15 14 3.642 -4.985 -0.666 0.538 AA_DA6DC7:DG14DT15_BB 6 -1.337 1.910 40.756 1.367 0.788 4.000 35.787 A A 7 8 7.877 B B 14 13 3.771 4.823 1.237 1.407 AA_DC7DC8:DG13DG14_BB 7 2.611 -4.265 35.378 1.460 -1.564 3.011 40.055 A A 8 9 -2.716 B B 13 12 3.150 -1.859 -0.377 2.520 AA_DC8DG9:DC12DG13_BB 8 2.118 -3.094 39.960 3.880 0.779 3.686 37.914 A A 9 10 7.364 B B 12 11 3.477 4.768 -0.146 1.928 AA_DG9DA10:DT11DC12_BB 9 -3.021 4.666 37.507 2.296 -0.201 3.649 37.327 C C 21 22 9.127 B B 20 19 3.452 5.810 0.412 1.419 CC_DT21DC22:DG19DA20_BB 10 3.784 -5.944 36.700 1.377 -0.096 3.207 38.067 C C 22 23 -2.652 B B 19 18 3.316 -1.728 0.147 2.496 CC_DC22DG23:DC18DG19_BB 11 2.257 -3.464 37.964 4.046 0.061 3.816 41.221 C C 23 24 6.031 B B 18 17 3.607 4.233 -0.139 2.335 CC_DG23DG24:DC17DC18_BB 12 -3.958 5.639 40.829 2.796 -0.290 3.084 28.153 C C 24 25 8.520 B D 17 36 3.252 4.127 -0.635 -0.587 CC_DG24DT25:DA36DC17_DB 13 1.921 -3.966 27.790 -2.148 1.745 3.321 32.495 C C 25 26 9.113 D D 36 35 3.130 5.079 -0.148 1.506 CC_DT25DA26:DT35DA36_DD 14 0.303 -0.544 32.105 1.809 0.316 3.569 42.601 C C 26 27 0.589 D D 35 34 3.539 0.428 -0.584 0.747 CC_DA26DC27:DG34DT35_DD 15 -1.986 2.734 42.554 0.981 0.587 3.931 39.369 C C 27 28 4.631 D D 34 33 3.752 3.115 1.299 1.548 CC_DC27DC28:DG33DG34_DD 16 2.498 -3.714 39.174 1.863 -1.580 3.224 37.521 C C 28 29 -0.331 D D 33 32 3.252 -0.213 -0.349 2.524 CC_DC28DG29:DC32DG33_DD 17 1.325 -2.061 37.498 3.952 0.713 3.821 41.254 C C 29 30 9.862 D D 32 31 3.462 6.908 -0.284 2.448 CC_DG29DA30:DT31DC32_DD 18 -4.023 5.743 40.505 2.638 -0.084 software diffrn_source software chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Refinement description Data collection Database references Derived calculations 1 0 2003-03-04 1 1 2008-04-28 1 2 2011-07-13 1 3 2017-10-11 1 4 2019-07-24 1 5 2024-02-14 _diffrn_source.pdbx_synchrotron_site _software.classification _software.name _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2002-03-05 REL REL CA CALCIUM ION NA SODIUM ION HOH water CA 101 2 CA CA 101 A CA 102 2 CA CA 102 B CA 104 2 CA CA 104 C CA 103 2 CA CA 103 D NA 105 3 NA NA 105 D NA 106 3 NA NA 106 D HOH 501 4 HOH HOH 501 A HOH 503 4 HOH HOH 503 A HOH 504 4 HOH HOH 504 A HOH 514 4 HOH HOH 514 A HOH 518 4 HOH HOH 518 A HOH 521 4 HOH HOH 521 A HOH 522 4 HOH HOH 522 A HOH 526 4 HOH HOH 526 A HOH 527 4 HOH HOH 527 A HOH 540 4 HOH HOH 540 A HOH 541 4 HOH HOH 541 A HOH 542 4 HOH HOH 542 A HOH 543 4 HOH HOH 543 A HOH 546 4 HOH HOH 546 A HOH 548 4 HOH HOH 548 A HOH 549 4 HOH HOH 549 A HOH 551 4 HOH HOH 551 A HOH 554 4 HOH HOH 554 A HOH 555 4 HOH HOH 555 A HOH 561 4 HOH HOH 561 A HOH 562 4 HOH HOH 562 A HOH 563 4 HOH HOH 563 A HOH 576 4 HOH HOH 576 A HOH 577 4 HOH HOH 577 A HOH 578 4 HOH HOH 578 A HOH 580 4 HOH HOH 580 A HOH 588 4 HOH HOH 588 A HOH 601 4 HOH HOH 601 A HOH 602 4 HOH HOH 602 A HOH 605 4 HOH HOH 605 A HOH 624 4 HOH HOH 624 A HOH 625 4 HOH HOH 625 A HOH 627 4 HOH HOH 627 A HOH 632 4 HOH HOH 632 A HOH 633 4 HOH HOH 633 A HOH 634 4 HOH HOH 634 A HOH 636 4 HOH HOH 636 A HOH 652 4 HOH HOH 652 A HOH 653 4 HOH HOH 653 A HOH 657 4 HOH HOH 657 A HOH 661 4 HOH HOH 661 A HOH 666 4 HOH HOH 666 A HOH 508 4 HOH HOH 508 B HOH 511 4 HOH HOH 511 B HOH 512 4 HOH HOH 512 B HOH 519 4 HOH HOH 519 B HOH 523 4 HOH HOH 523 B HOH 525 4 HOH HOH 525 B HOH 530 4 HOH HOH 530 B HOH 538 4 HOH HOH 538 B HOH 547 4 HOH HOH 547 B HOH 550 4 HOH HOH 550 B HOH 552 4 HOH HOH 552 B HOH 553 4 HOH HOH 553 B HOH 565 4 HOH HOH 565 B HOH 566 4 HOH HOH 566 B HOH 567 4 HOH HOH 567 B HOH 589 4 HOH HOH 589 B HOH 590 4 HOH HOH 590 B HOH 591 4 HOH HOH 591 B HOH 592 4 HOH HOH 592 B HOH 606 4 HOH HOH 606 B HOH 607 4 HOH HOH 607 B HOH 608 4 HOH HOH 608 B HOH 620 4 HOH HOH 620 B HOH 621 4 HOH HOH 621 B HOH 622 4 HOH HOH 622 B HOH 623 4 HOH HOH 623 B HOH 629 4 HOH HOH 629 B HOH 630 4 HOH HOH 630 B HOH 631 4 HOH HOH 631 B HOH 640 4 HOH HOH 640 B HOH 641 4 HOH HOH 641 B HOH 642 4 HOH HOH 642 B HOH 645 4 HOH HOH 645 B HOH 647 4 HOH HOH 647 B HOH 658 4 HOH HOH 658 B HOH 659 4 HOH HOH 659 B HOH 662 4 HOH HOH 662 B HOH 507 4 HOH HOH 507 C HOH 517 4 HOH HOH 517 C HOH 524 4 HOH HOH 524 C HOH 531 4 HOH HOH 531 C HOH 532 4 HOH HOH 532 C HOH 534 4 HOH HOH 534 C HOH 536 4 HOH HOH 536 C HOH 537 4 HOH HOH 537 C HOH 556 4 HOH HOH 556 C HOH 557 4 HOH HOH 557 C HOH 564 4 HOH HOH 564 C HOH 568 4 HOH HOH 568 C HOH 570 4 HOH HOH 570 C HOH 571 4 HOH HOH 571 C HOH 573 4 HOH HOH 573 C HOH 582 4 HOH HOH 582 C HOH 583 4 HOH HOH 583 C HOH 584 4 HOH HOH 584 C HOH 587 4 HOH HOH 587 C HOH 593 4 HOH HOH 593 C HOH 594 4 HOH HOH 594 C HOH 596 4 HOH HOH 596 C HOH 597 4 HOH HOH 597 C HOH 598 4 HOH HOH 598 C HOH 599 4 HOH HOH 599 C HOH 603 4 HOH HOH 603 C HOH 609 4 HOH HOH 609 C HOH 610 4 HOH HOH 610 C HOH 612 4 HOH HOH 612 C HOH 617 4 HOH HOH 617 C HOH 618 4 HOH HOH 618 C HOH 637 4 HOH HOH 637 C HOH 638 4 HOH HOH 638 C HOH 646 4 HOH HOH 646 C HOH 654 4 HOH HOH 654 C HOH 656 4 HOH HOH 656 C HOH 667 4 HOH HOH 667 C HOH 668 4 HOH HOH 668 C HOH 502 4 HOH HOH 502 D HOH 505 4 HOH HOH 505 D HOH 506 4 HOH HOH 506 D HOH 509 4 HOH HOH 509 D HOH 510 4 HOH HOH 510 D HOH 513 4 HOH HOH 513 D HOH 515 4 HOH HOH 515 D HOH 516 4 HOH HOH 516 D HOH 520 4 HOH HOH 520 D HOH 528 4 HOH HOH 528 D HOH 529 4 HOH HOH 529 D HOH 533 4 HOH HOH 533 D HOH 535 4 HOH HOH 535 D HOH 539 4 HOH HOH 539 D HOH 544 4 HOH HOH 544 D HOH 545 4 HOH HOH 545 D HOH 558 4 HOH HOH 558 D HOH 559 4 HOH HOH 559 D HOH 560 4 HOH HOH 560 D HOH 569 4 HOH HOH 569 D HOH 572 4 HOH HOH 572 D HOH 574 4 HOH HOH 574 D HOH 575 4 HOH HOH 575 D HOH 579 4 HOH HOH 579 D HOH 581 4 HOH HOH 581 D HOH 585 4 HOH HOH 585 D HOH 586 4 HOH HOH 586 D HOH 595 4 HOH HOH 595 D HOH 600 4 HOH HOH 600 D HOH 604 4 HOH HOH 604 D HOH 611 4 HOH HOH 611 D HOH 613 4 HOH HOH 613 D HOH 614 4 HOH HOH 614 D HOH 615 4 HOH HOH 615 D HOH 616 4 HOH HOH 616 D HOH 619 4 HOH HOH 619 D HOH 626 4 HOH HOH 626 D HOH 628 4 HOH HOH 628 D HOH 635 4 HOH HOH 635 D HOH 639 4 HOH HOH 639 D HOH 643 4 HOH HOH 643 D HOH 644 4 HOH HOH 644 D HOH 648 4 HOH HOH 648 D HOH 649 4 HOH HOH 649 D HOH 650 4 HOH HOH 650 D HOH 651 4 HOH HOH 651 D HOH 655 4 HOH HOH 655 D HOH 660 4 HOH HOH 660 D HOH 663 4 HOH HOH 663 D HOH 664 4 HOH HOH 664 D HOH 665 4 HOH HOH 665 D T 1 n 1 DT 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A G 4 n 4 DG 4 A T 5 n 5 DT 5 A A 6 n 6 DA 6 A C 7 n 7 DC 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A A 10 n 10 DA 10 A T 11 n 1 DT 11 B C 12 n 2 DC 12 B G 13 n 3 DG 13 B G 14 n 4 DG 14 B T 15 n 5 DT 15 B A 16 n 6 DA 16 B C 17 n 7 DC 17 B C 18 n 8 DC 18 B G 19 n 9 DG 19 B A 20 n 10 DA 20 B T 21 n 1 DT 21 C C 22 n 2 DC 22 C G 23 n 3 DG 23 C G 24 n 4 DG 24 C T 25 n 5 DT 25 C A 26 n 6 DA 26 C C 27 n 7 DC 27 C C 28 n 8 DC 28 C G 29 n 9 DG 29 C A 30 n 10 DA 30 C T 31 n 1 DT 31 D C 32 n 2 DC 32 D G 33 n 3 DG 33 D G 34 n 4 DG 34 D T 35 n 5 DT 35 D A 36 n 6 DA 36 D C 37 n 7 DC 37 D C 38 n 8 DC 38 D G 39 n 9 DG 39 D A 40 n 10 DA 40 D author_defined_assembly 4 tetrameric A HOH 503 K O HOH 1_555 A CA 101 E CA CA 1_555 A HOH 540 K O HOH 1_555 138.8 A HOH 503 K O HOH 1_555 A CA 101 E CA CA 1_555 A HOH 541 K O HOH 1_555 74.9 A HOH 540 K O HOH 1_555 A CA 101 E CA CA 1_555 A HOH 541 K O HOH 1_555 71.8 A HOH 503 K O HOH 1_555 A CA 101 E CA CA 1_555 A HOH 542 K O HOH 1_555 141.0 A HOH 540 K O HOH 1_555 A CA 101 E CA CA 1_555 A HOH 542 K O HOH 1_555 73.7 A HOH 541 K O HOH 1_555 A CA 101 E CA CA 1_555 A HOH 542 K O HOH 1_555 143.8 A HOH 503 K O HOH 1_555 A CA 101 E CA CA 1_555 A HOH 543 K O HOH 1_555 77.9 A HOH 540 K O HOH 1_555 A CA 101 E CA CA 1_555 A HOH 543 K O HOH 1_555 87.5 A HOH 541 K O HOH 1_555 A CA 101 E CA CA 1_555 A HOH 543 K O HOH 1_555 104.4 A HOH 542 K O HOH 1_555 A CA 101 E CA CA 1_555 A HOH 543 K O HOH 1_555 84.5 A HOH 503 K O HOH 1_555 A CA 101 E CA CA 1_555 D HOH 502 N O HOH 1_555 74.2 A HOH 540 K O HOH 1_555 A CA 101 E CA CA 1_555 D HOH 502 N O HOH 1_555 146.5 A HOH 541 K O HOH 1_555 A CA 101 E CA CA 1_555 D HOH 502 N O HOH 1_555 137.5 A HOH 542 K O HOH 1_555 A CA 101 E CA CA 1_555 D HOH 502 N O HOH 1_555 73.7 A HOH 543 K O HOH 1_555 A CA 101 E CA CA 1_555 D HOH 502 N O HOH 1_555 96.8 A HOH 503 K O HOH 1_555 A CA 101 E CA CA 1_555 D HOH 544 N O HOH 1_555 109.2 A HOH 540 K O HOH 1_555 A CA 101 E CA CA 1_555 D HOH 544 N O HOH 1_555 89.2 A HOH 541 K O HOH 1_555 A CA 101 E CA CA 1_555 D HOH 544 N O HOH 1_555 81.5 A HOH 542 K O HOH 1_555 A CA 101 E CA CA 1_555 D HOH 544 N O HOH 1_555 87.6 A HOH 543 K O HOH 1_555 A CA 101 E CA CA 1_555 D HOH 544 N O HOH 1_555 172.0 D HOH 502 N O HOH 1_555 A CA 101 E CA CA 1_555 D HOH 544 N O HOH 1_555 82.0 A HOH 577 K O HOH 1_555 B CA 102 F CA CA 1_555 A HOH 588 K O HOH 1_555 81.1 A HOH 577 K O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 512 L O HOH 1_555 74.8 A HOH 588 K O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 512 L O HOH 1_555 134.4 A HOH 577 K O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 589 L O HOH 1_555 162.7 A HOH 588 K O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 589 L O HOH 1_555 106.6 B HOH 512 L O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 589 L O HOH 1_555 89.2 A HOH 577 K O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 590 L O HOH 1_555 81.2 A HOH 588 K O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 590 L O HOH 1_555 68.8 B HOH 512 L O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 590 L O HOH 1_555 69.7 B HOH 589 L O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 590 L O HOH 1_555 87.1 A HOH 577 K O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 591 L O HOH 1_555 121.8 A HOH 588 K O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 591 L O HOH 1_555 76.9 B HOH 512 L O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 591 L O HOH 1_555 148.5 B HOH 589 L O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 591 L O HOH 1_555 75.4 B HOH 590 L O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 591 L O HOH 1_555 134.9 A HOH 577 K O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 592 L O HOH 1_555 78.4 A HOH 588 K O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 592 L O HOH 1_555 138.5 B HOH 512 L O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 592 L O HOH 1_555 73.0 B HOH 589 L O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 592 L O HOH 1_555 103.6 B HOH 590 L O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 592 L O HOH 1_555 141.0 B HOH 591 L O HOH 1_555 B CA 102 F CA CA 1_555 B HOH 592 L O HOH 1_555 83.9 A HOH 627 K O HOH 1_555 D NA 106 J NA NA 1_555 B HOH 659 L O HOH 1_555 63.7 A HOH 627 K O HOH 1_555 D NA 106 J NA NA 1_555 D HOH 628 N O HOH 1_555 113.3 B HOH 659 L O HOH 1_555 D NA 106 J NA NA 1_555 D HOH 628 N O HOH 1_555 72.8 A HOH 627 K O HOH 1_555 D NA 106 J NA NA 1_555 D HOH 651 N O HOH 1_555 95.5 B HOH 659 L O HOH 1_555 D NA 106 J NA NA 1_555 D HOH 651 N O HOH 1_555 132.6 D HOH 628 N O HOH 1_555 D NA 106 J NA NA 1_555 D HOH 651 N O HOH 1_555 78.8 A HOH 627 K O HOH 1_555 D NA 106 J NA NA 1_555 D HOH 660 N O HOH 1_555 159.5 B HOH 659 L O HOH 1_555 D NA 106 J NA NA 1_555 D HOH 660 N O HOH 1_555 131.6 D HOH 628 N O HOH 1_555 D NA 106 J NA NA 1_555 D HOH 660 N O HOH 1_555 86.3 D HOH 651 N O HOH 1_555 D NA 106 J NA NA 1_555 D HOH 660 N O HOH 1_555 82.1 B HOH 538 L O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 531 M O HOH 1_555 139.5 B HOH 538 L O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 582 M O HOH 1_555 144.5 C HOH 531 M O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 582 M O HOH 1_555 70.4 B HOH 538 L O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 583 M O HOH 1_555 69.3 C HOH 531 M O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 583 M O HOH 1_555 85.7 C HOH 582 M O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 583 M O HOH 1_555 144.5 B HOH 538 L O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 584 M O HOH 1_555 96.1 C HOH 531 M O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 584 M O HOH 1_555 108.6 C HOH 582 M O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 584 M O HOH 1_555 86.8 C HOH 583 M O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 584 M O HOH 1_555 76.2 B HOH 538 L O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 587 M O HOH 1_555 87.8 C HOH 531 M O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 587 M O HOH 1_555 72.7 C HOH 582 M O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 587 M O HOH 1_555 85.3 C HOH 583 M O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 587 M O HOH 1_555 112.8 C HOH 584 M O HOH 1_555 C CA 104 G CA CA 1_555 C HOH 587 M O HOH 1_555 171.0 C HOH 570 M O HOH 1_555 D CA 103 H CA CA 1_555 C HOH 571 M O HOH 1_555 79.4 C HOH 570 M O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 515 N O HOH 1_555 101.2 C HOH 571 M O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 515 N O HOH 1_555 78.0 C HOH 570 M O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 572 N O HOH 1_555 106.3 C HOH 571 M O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 572 N O HOH 1_555 75.4 D HOH 515 N O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 572 N O HOH 1_555 137.0 C HOH 570 M O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 581 N O HOH 1_555 91.9 C HOH 571 M O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 581 N O HOH 1_555 144.0 D HOH 515 N O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 581 N O HOH 1_555 138.0 D HOH 572 N O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 581 N O HOH 1_555 73.7 C HOH 570 M O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 585 N O HOH 1_555 173.0 C HOH 571 M O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 585 N O HOH 1_555 94.4 D HOH 515 N O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 585 N O HOH 1_555 80.5 D HOH 572 N O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 585 N O HOH 1_555 68.7 D HOH 581 N O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 585 N O HOH 1_555 91.3 C HOH 570 M O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 586 N O HOH 1_555 78.3 C HOH 571 M O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 586 N O HOH 1_555 135.8 D HOH 515 N O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 586 N O HOH 1_555 69.7 D HOH 572 N O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 586 N O HOH 1_555 147.8 D HOH 581 N O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 586 N O HOH 1_555 74.3 D HOH 585 N O HOH 1_555 D CA 103 H CA CA 1_555 D HOH 586 N O HOH 1_555 108.6 C HOH 610 M O HOH 1_555 D NA 105 I NA NA 1_555 C HOH 612 M O HOH 1_555 85.4 C HOH 610 M O HOH 1_555 D NA 105 I NA NA 1_555 D HOH 611 N O HOH 1_555 168.1 C HOH 612 M O HOH 1_555 D NA 105 I NA NA 1_555 D HOH 611 N O HOH 1_555 85.2 C HOH 610 M O HOH 1_555 D NA 105 I NA NA 1_555 D HOH 613 N O HOH 1_555 106.7 C HOH 612 M O HOH 1_555 D NA 105 I NA NA 1_555 D HOH 613 N O HOH 1_555 132.3 D HOH 611 N O HOH 1_555 D NA 105 I NA NA 1_555 D HOH 613 N O HOH 1_555 84.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 4.55 0.60 119.90 124.45 A A A N3 C4 O4 DT DT DT 1 1 1 N 1 -4.90 0.80 105.90 101.00 A A A O4' C1' C2' DC DC DC 2 2 2 N 1 -4.22 0.70 108.00 103.78 A A A O4' C1' N1 DC DC DC 2 2 2 N 1 3.82 0.50 119.90 123.72 A A A C2 N3 C4 DC DC DC 2 2 2 N 1 7.51 1.20 119.70 127.21 A A A C3' O3' P DG DG DT 4 4 5 Y 1 -9.25 0.90 105.70 96.45 A A A O5' P OP1 DT DT DT 5 5 5 N 1 3.76 0.60 119.90 123.66 A A A N3 C4 O4 DT DT DT 5 5 5 N 1 10.90 1.10 110.50 121.40 A A A O3' P OP2 DT DA DA 5 6 6 Y 1 -5.43 0.90 105.70 100.27 A A A O5' P OP1 DA DA DA 6 6 6 N 1 -5.07 0.80 102.40 97.33 A A A C3' C2' C1' DA DA DA 6 6 6 N 1 3.90 0.30 108.30 112.20 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 8.88 1.40 114.30 123.18 A A A N1 C1' C2' DC DC DC 7 7 7 N 1 -7.40 0.70 108.00 100.60 A A A O4' C1' N1 DC DC DC 7 7 7 N 1 6.60 1.10 109.80 116.40 A A A C5' C4' O4' DG DG DG 9 9 9 N 1 -6.51 0.70 108.00 101.49 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 7.80 1.10 110.50 118.30 B B B O3' P OP2 DT DC DC 11 12 12 Y 1 8.47 1.20 110.70 119.17 B B B O5' P OP1 DG DG DG 13 13 13 N 1 -6.32 0.70 108.00 101.68 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 -6.40 0.70 108.00 101.60 B B B O4' C1' N1 DT DT DT 15 15 15 N 1 2.24 0.30 108.30 110.54 B B B O4' C1' N1 DC DC DC 17 17 17 N 1 -7.91 0.70 108.00 100.09 B B B O4' C1' N1 DC DC DC 18 18 18 N 1 9.34 1.50 119.60 128.94 B B B OP1 P OP2 DG DG DG 19 19 19 N 1 2.89 0.30 108.30 111.19 B B B O4' C1' N9 DG DG DG 19 19 19 N 1 3.60 0.60 114.60 118.20 C C C N1 C2 N3 DT DT DT 21 21 21 N 1 -5.52 0.70 108.00 102.48 C C C O4' C1' N9 DG DG DG 24 24 24 N 1 4.41 0.60 119.90 124.31 C C C N1 C6 O6 DG DG DG 24 24 24 N 1 -4.15 0.60 128.60 124.45 C C C C5 C6 O6 DG DG DG 24 24 24 N 1 11.61 1.50 119.60 131.21 C C C OP1 P OP2 DT DT DT 25 25 25 N 1 -6.49 0.70 108.00 101.51 C C C O4' C1' N1 DT DT DT 25 25 25 N 1 -6.40 0.70 108.00 101.60 C C C O4' C1' N1 DC DC DC 27 27 27 N 1 -5.18 0.70 108.00 102.82 C C C O4' C1' N1 DC DC DC 28 28 28 N 1 -5.67 0.70 108.00 102.33 C C C O4' C1' N9 DG DG DG 29 29 29 N 1 2.97 0.30 108.30 111.27 D D D O4' C1' N1 DT DT DT 31 31 31 N 1 3.80 0.60 119.00 122.80 D D D C4 C5 C7 DT DT DT 31 31 31 N 1 -4.94 0.60 122.90 117.96 D D D C6 C5 C7 DT DT DT 31 31 31 N 1 -4.73 0.70 108.00 103.27 D D D O4' C1' N1 DC DC DC 32 32 32 N 1 -6.66 0.70 108.00 101.34 D D D O4' C1' N9 DG DG DG 34 34 34 N 1 -5.61 0.70 108.00 102.39 D D D O4' C1' N1 DT DT DT 35 35 35 N 1 -7.43 0.70 108.00 100.57 D D D O4' C1' N1 DC DC DC 38 38 38 N 1 -4.57 0.70 108.00 103.43 D D D O4' C1' N9 DG DG DG 39 39 39 N 1 9.76 1.50 119.60 129.36 D D D OP1 P OP2 DA DA DA 40 40 40 N 1 A A O3' C3' DT DT 1 1 -0.050 0.006 1.419 1.369 N 1 A A O3' P DT DC 1 2 0.084 0.012 1.607 1.691 Y 1 A A O3' C3' DC DC 8 8 -0.039 0.006 1.419 1.380 N 1 A A O3' C3' DG DG 9 9 -0.047 0.006 1.419 1.372 N 1 D D O3' C3' DA DA 36 36 -0.045 0.006 1.419 1.374 N 18.270 0.26 0.00 -0.32 1.15 0.00 -1.64 0.929 0.858 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.29726 0.22821 0.2314 0.23144 1.85 15.00 440 9180 8780 4.8 97.35 5.120 0.159 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.195 0.189 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.85 15.00 168 982 6 808 0 0.015 0.021 900 0.001 0.020 372 2.641 3.000 1372 1.320 3.000 936 0.081 0.200 120 0.015 0.020 412 0.348 0.300 275 0.220 0.300 458 0.180 0.500 136 0.037 0.500 3 0.133 0.300 34 0.211 0.300 14 0.230 0.500 13 2.027 3.000 900 2.520 4.500 1372 0.303 0.246 1.948 73 1281 10 1.85 15.0 1L4J 9224 8780 2.0 2.0 0.062 1 14.25 3.0 97.35 0.199 1.85 2.00 5.45 1913 3.0 98.6 refinement REFMAC 5.0 data reduction XDS refinement XTALVIEW data collection MAR345 data scaling XDS Holliday Junction TCGGTACCGA with Na and Ca Binding Sites. 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N biological unit is composed of 4 strands metalc 2.650 A CA 101 E CA CA 1_555 A HOH 503 K O HOH 1_555 metalc 2.393 A CA 101 E CA CA 1_555 A HOH 540 K O HOH 1_555 metalc 2.540 A CA 101 E CA CA 1_555 A HOH 541 K O HOH 1_555 metalc 2.299 A CA 101 E CA CA 1_555 A HOH 542 K O HOH 1_555 metalc 2.090 A CA 101 E CA CA 1_555 A HOH 543 K O HOH 1_555 metalc 2.458 A CA 101 E CA CA 1_555 D HOH 502 N O HOH 1_555 metalc 2.424 A CA 101 E CA CA 1_555 D HOH 544 N O HOH 1_555 metalc 2.662 A HOH 577 K O HOH 1_555 B CA 102 F CA CA 1_555 metalc 2.608 A HOH 588 K O HOH 1_555 B CA 102 F CA CA 1_555 metalc 2.552 A HOH 627 K O HOH 1_555 D NA 106 J NA NA 1_555 metalc 2.456 B CA 102 F CA CA 1_555 B HOH 512 L O HOH 1_555 metalc 2.395 B CA 102 F CA CA 1_555 B HOH 589 L O HOH 1_555 metalc 2.482 B CA 102 F CA CA 1_555 B HOH 590 L O HOH 1_555 metalc 2.364 B CA 102 F CA CA 1_555 B HOH 591 L O HOH 1_555 metalc 2.165 B CA 102 F CA CA 1_555 B HOH 592 L O HOH 1_555 metalc 2.354 B HOH 538 L O HOH 1_555 C CA 104 G CA CA 1_555 metalc 2.312 B HOH 659 L O HOH 1_555 D NA 106 J NA NA 1_555 metalc 2.403 C CA 104 G CA CA 1_555 C HOH 531 M O HOH 1_555 metalc 2.402 C CA 104 G CA CA 1_555 C HOH 582 M O HOH 1_555 metalc 2.384 C CA 104 G CA CA 1_555 C HOH 583 M O HOH 1_555 metalc 2.209 C CA 104 G CA CA 1_555 C HOH 584 M O HOH 1_555 metalc 2.434 C CA 104 G CA CA 1_555 C HOH 587 M O HOH 1_555 metalc 2.308 C HOH 570 M O HOH 1_555 D CA 103 H CA CA 1_555 metalc 2.443 C HOH 571 M O HOH 1_555 D CA 103 H CA CA 1_555 metalc 2.142 C HOH 610 M O HOH 1_555 D NA 105 I NA NA 1_555 metalc 2.560 C HOH 612 M O HOH 1_555 D NA 105 I NA NA 1_555 metalc 2.591 D CA 103 H CA CA 1_555 D HOH 515 N O HOH 1_555 metalc 2.237 D CA 103 H CA CA 1_555 D HOH 572 N O HOH 1_555 metalc 2.351 D CA 103 H CA CA 1_555 D HOH 581 N O HOH 1_555 metalc 2.252 D CA 103 H CA CA 1_555 D HOH 585 N O HOH 1_555 metalc 2.509 D CA 103 H CA CA 1_555 D HOH 586 N O HOH 1_555 metalc 2.187 D NA 105 I NA NA 1_555 D HOH 611 N O HOH 1_555 metalc 2.552 D NA 105 I NA NA 1_555 D HOH 613 N O HOH 1_555 metalc 2.720 D NA 106 J NA NA 1_555 D HOH 628 N O HOH 1_555 metalc 2.418 D NA 106 J NA NA 1_555 D HOH 651 N O HOH 1_555 metalc 2.513 D NA 106 J NA NA 1_555 D HOH 660 N O HOH 1_555 hydrog WATSON-CRICK A DT 1 A N3 DT 1 1_555 D DA 40 D N1 DA 10 1_555 hydrog WATSON-CRICK A DT 1 A O4 DT 1 1_555 D DA 40 D N6 DA 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 D DG 39 D N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 D DG 39 D O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 D DG 39 D N2 DG 9 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 D DC 38 D N3 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 D DC 38 D O2 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 D DC 38 D N4 DC 8 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 D DC 37 D N3 DC 7 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 D DC 37 D O2 DC 7 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 D DC 37 D N4 DC 7 1_555 hydrog WATSON-CRICK A DT 5 A N3 DT 5 1_555 B DA 16 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 5 A O4 DT 5 1_555 B DA 16 B N6 DA 6 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 15 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 15 B O4 DT 5 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 B DG 14 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 B DG 14 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 B DG 14 B N2 DG 4 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 13 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 13 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 10 1_555 B DT 11 B N3 DT 1 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 10 1_555 B DT 11 B O4 DT 1 1_555 hydrog WATSON-CRICK B DC 17 B N3 DC 7 1_555 C DG 24 C N1 DG 4 1_555 hydrog WATSON-CRICK B DC 17 B N4 DC 7 1_555 C DG 24 C O6 DG 4 1_555 hydrog WATSON-CRICK B DC 17 B O2 DC 7 1_555 C DG 24 C N2 DG 4 1_555 hydrog WATSON-CRICK B DC 18 B N3 DC 8 1_555 C DG 23 C N1 DG 3 1_555 hydrog WATSON-CRICK B DC 18 B N4 DC 8 1_555 C DG 23 C O6 DG 3 1_555 hydrog WATSON-CRICK B DC 18 B O2 DC 8 1_555 C DG 23 C N2 DG 3 1_555 hydrog WATSON-CRICK B DG 19 B N1 DG 9 1_555 C DC 22 C N3 DC 2 1_555 hydrog WATSON-CRICK B DG 19 B N2 DG 9 1_555 C DC 22 C O2 DC 2 1_555 hydrog WATSON-CRICK B DG 19 B O6 DG 9 1_555 C DC 22 C N4 DC 2 1_555 hydrog WATSON-CRICK B DA 20 B N1 DA 10 1_555 C DT 21 C N3 DT 1 1_555 hydrog WATSON-CRICK B DA 20 B N6 DA 10 1_555 C DT 21 C O4 DT 1 1_555 hydrog WATSON-CRICK C DT 25 C N3 DT 5 1_555 D DA 36 D N1 DA 6 1_555 hydrog WATSON-CRICK C DT 25 C O4 DT 5 1_555 D DA 36 D N6 DA 6 1_555 hydrog WATSON-CRICK C DA 26 C N1 DA 6 1_555 D DT 35 D N3 DT 5 1_555 hydrog WATSON-CRICK C DA 26 C N6 DA 6 1_555 D DT 35 D O4 DT 5 1_555 hydrog WATSON-CRICK C DC 27 C N3 DC 7 1_555 D DG 34 D N1 DG 4 1_555 hydrog WATSON-CRICK C DC 27 C N4 DC 7 1_555 D DG 34 D O6 DG 4 1_555 hydrog WATSON-CRICK C DC 27 C O2 DC 7 1_555 D DG 34 D N2 DG 4 1_555 hydrog WATSON-CRICK C DC 28 C N3 DC 8 1_555 D DG 33 D N1 DG 3 1_555 hydrog WATSON-CRICK C DC 28 C N4 DC 8 1_555 D DG 33 D O6 DG 3 1_555 hydrog WATSON-CRICK C DC 28 C O2 DC 8 1_555 D DG 33 D N2 DG 3 1_555 hydrog WATSON-CRICK C DG 29 C N1 DG 9 1_555 D DC 32 D N3 DC 2 1_555 hydrog WATSON-CRICK C DG 29 C N2 DG 9 1_555 D DC 32 D O2 DC 2 1_555 hydrog WATSON-CRICK C DG 29 C O6 DG 9 1_555 D DC 32 D N4 DC 2 1_555 hydrog WATSON-CRICK C DA 30 C N1 DA 10 1_555 D DT 31 D N3 DT 1 1_555 hydrog WATSON-CRICK C DA 30 C N6 DA 10 1_555 D DT 31 D O4 DT 1 1_555 DNA Holliday Junction, DNA 1L4J PDB 1 1L4J 1 10 1L4J 1 10 1L4J A 1 1 10 11 20 1L4J 11 20 1L4J B 1 1 10 21 30 1L4J 21 30 1L4J C 1 1 10 31 40 1L4J 31 40 1L4J D 1 1 10 BINDING SITE FOR RESIDUE CA A 101 A CA 101 Software 7 BINDING SITE FOR RESIDUE CA B 102 B CA 102 Software 7 BINDING SITE FOR RESIDUE CA D 103 D CA 103 Software 7 BINDING SITE FOR RESIDUE CA C 104 C CA 104 Software 6 BINDING SITE FOR RESIDUE NA D 105 D NA 105 Software 5 BINDING SITE FOR RESIDUE NA D 106 D NA 106 Software 5 A HOH 503 K HOH 7 1_555 A HOH 540 K HOH 7 1_555 A HOH 541 K HOH 7 1_555 A HOH 542 K HOH 7 1_555 A HOH 543 K HOH 7 1_555 D HOH 502 N HOH 7 1_555 D HOH 544 N HOH 7 1_555 A HOH 577 K HOH 7 1_555 A HOH 588 K HOH 7 1_555 B HOH 512 L HOH 7 1_555 B HOH 589 L HOH 7 1_555 B HOH 590 L HOH 7 1_555 B HOH 591 L HOH 7 1_555 B HOH 592 L HOH 7 1_555 C HOH 570 M HOH 7 1_555 C HOH 571 M HOH 7 1_555 D HOH 515 N HOH 7 1_555 D HOH 572 N HOH 7 1_555 D HOH 581 N HOH 7 1_555 D HOH 585 N HOH 7 1_555 D HOH 586 N HOH 7 1_555 B HOH 538 L HOH 6 1_555 C HOH 531 M HOH 6 1_555 C HOH 582 M HOH 6 1_555 C HOH 583 M HOH 6 1_555 C HOH 584 M HOH 6 1_555 C HOH 587 M HOH 6 1_555 C HOH 610 M HOH 5 1_555 C HOH 612 M HOH 5 1_555 D HOH 611 N HOH 5 1_555 D HOH 613 N HOH 5 1_555 D HOH 614 N HOH 5 1_555 A HOH 627 K HOH 5 1_555 B HOH 659 L HOH 5 1_555 D HOH 628 N HOH 5 1_555 D HOH 651 N HOH 5 1_555 D HOH 660 N HOH 5 1_555 5 C 1 2 1