0.015136
0.000000
0.005682
0.000000
0.042061
0.000000
0.000000
0.000000
0.014470
0.00000
0.00000
0.00000
Thorpe, J.H.
Gale, B.C.
Teixeira, S.C.M.
Cardin, C.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
110.58
90.00
66.067
23.775
73.816
Ca 2
40.078
CALCIUM ION
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
N
1
N
CA
N
2
N
O
N
3
N
P
N
4
N
O
N
5
N
O
N
6
N
O
N
7
N
C
N
8
R
C
N
9
N
O
N
10
S
C
N
11
N
O
N
12
N
C
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
N
50
N
N
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
N
Y
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
P
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
C
N
115
R
C
N
116
N
O
N
117
S
C
N
118
N
O
N
119
N
C
N
120
R
C
N
121
N
N
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
NA
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
327
97
109
10.1016/S0022-2836(03)00088-3
12614611
Conformational and Hydration Effects of Site-selective Sodium, Calcium and
Strontium Ion Binding to the DNA Holliday Junction Structure
d(TCGGTACCGA)4
2003
10.2210/pdb1l4j/pdb
pdb_00001l4j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-12-08
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.073
1.0
X11
EMBL/DESY, HAMBURG
1.073
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
section of Holliday junction
3045.005
5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3'
4
syn
polymer
40.078
CALCIUM ION
4
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
18.015
water
168
nat
water
no
no
(DT)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DA)
TCGGTACCGA
A,B,C,D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
1
2.14
42.47
VAPOR DIFFUSION, SITTING DROP
7.0
Sodium Cacodylate, Calcium Chloride, MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K
290
Sodium Cacodylate
1
Calcium Chloride
1
MPD
1
2.322
1
20
A
1
D
40
7.245
A_DT1:DA40_D
1
-15.088
0.007
0.151
-0.107
6.071
1
19
A
2
D
39
-2.720
A_DC2:DG39_D
2
-2.547
0.022
0.114
-0.211
2.996
1
19
A
3
D
38
-3.373
A_DG3:DC38_D
3
-4.062
-0.354
0.310
-0.180
-0.105
1
19
A
4
D
37
-0.978
A_DG4:DC37_D
4
-15.895
-0.297
0.253
-0.234
-4.067
1
20
A
5
B
16
-2.058
A_DT5:DA16_B
5
-12.756
-0.056
0.123
-0.113
13.145
1
20
A
6
B
15
-4.047
A_DA6:DT15_B
6
-7.337
0.354
0.232
-0.195
0.698
1
19
A
7
B
14
-2.823
A_DC7:DG14_B
7
-18.295
0.205
0.138
-0.339
-9.739
1
19
A
8
B
13
-3.163
A_DC8:DG13_B
8
3.151
0.117
0.298
-0.144
-0.751
1
19
A
9
B
12
-2.932
A_DG9:DC12_B
9
-1.256
-0.168
0.066
-0.170
5.376
1
20
A
10
B
11
-0.688
A_DA10:DT11_B
10
-13.600
0.156
0.025
-0.224
-3.228
1
20
C
21
B
20
1.280
C_DT21:DA20_B
11
-13.913
0.061
0.027
-0.026
2.447
1
19
C
22
B
19
-1.864
C_DC22:DG19_B
12
-1.809
0.084
0.186
-0.181
2.430
1
19
C
23
B
18
-1.759
C_DG23:DC18_B
13
-4.029
-0.190
0.312
-0.139
1.435
1
19
C
24
B
17
2.351
C_DG24:DC17_B
14
-13.004
-0.338
0.231
-0.244
-2.827
1
20
C
25
D
36
0.328
C_DT25:DA36_D
15
-10.526
-0.275
-0.086
-0.084
11.941
1
20
C
26
D
35
-3.294
C_DA26:DT35_D
16
-12.912
0.254
0.142
-0.141
-1.524
1
19
C
27
D
34
-2.210
C_DC27:DG34_D
17
-19.598
0.218
0.218
-0.221
-9.269
1
19
C
28
D
33
-0.928
C_DC28:DG33_D
18
5.578
0.302
0.328
-0.230
-2.805
1
19
C
29
D
32
-2.547
C_DG29:DC32_D
19
3.290
-0.090
0.056
-0.165
0.134
1
20
C
30
D
31
4.012
C_DA30:DT31_D
20
-18.541
-0.003
0.146
-0.198
3.855
39.946
A
A
1
2
10.187
D
D
40
39
3.494
6.906
-0.023
2.675
AA_DT1DC2:DG39DA40_DD
1
5.537
-8.167
38.992
3.012
0.758
3.287
38.555
A
A
2
3
-1.852
D
D
39
38
3.362
-1.222
0.459
2.949
AA_DC2DG3:DC38DG39_DD
2
1.808
-2.740
38.495
4.620
-0.468
3.820
43.734
A
A
3
4
5.093
D
D
38
37
3.642
3.783
-0.178
2.337
AA_DG3DG4:DC37DC38_DD
3
-4.865
6.551
43.318
2.723
-0.294
3.264
30.362
A
A
4
5
4.470
D
B
37
16
3.303
2.339
-0.317
-0.363
AA_DG4DT5:DA16DC37_BD
4
0.164
-0.314
30.273
-1.166
0.639
3.230
34.270
A
A
5
6
8.062
B
B
16
15
3.064
4.735
-0.037
1.447
AA_DT5DA6:DT15DA16_BB
5
-0.934
1.590
33.938
1.736
-0.079
3.573
41.068
A
A
6
7
-7.123
B
B
15
14
3.642
-4.985
-0.666
0.538
AA_DA6DC7:DG14DT15_BB
6
-1.337
1.910
40.756
1.367
0.788
4.000
35.787
A
A
7
8
7.877
B
B
14
13
3.771
4.823
1.237
1.407
AA_DC7DC8:DG13DG14_BB
7
2.611
-4.265
35.378
1.460
-1.564
3.011
40.055
A
A
8
9
-2.716
B
B
13
12
3.150
-1.859
-0.377
2.520
AA_DC8DG9:DC12DG13_BB
8
2.118
-3.094
39.960
3.880
0.779
3.686
37.914
A
A
9
10
7.364
B
B
12
11
3.477
4.768
-0.146
1.928
AA_DG9DA10:DT11DC12_BB
9
-3.021
4.666
37.507
2.296
-0.201
3.649
37.327
C
C
21
22
9.127
B
B
20
19
3.452
5.810
0.412
1.419
CC_DT21DC22:DG19DA20_BB
10
3.784
-5.944
36.700
1.377
-0.096
3.207
38.067
C
C
22
23
-2.652
B
B
19
18
3.316
-1.728
0.147
2.496
CC_DC22DG23:DC18DG19_BB
11
2.257
-3.464
37.964
4.046
0.061
3.816
41.221
C
C
23
24
6.031
B
B
18
17
3.607
4.233
-0.139
2.335
CC_DG23DG24:DC17DC18_BB
12
-3.958
5.639
40.829
2.796
-0.290
3.084
28.153
C
C
24
25
8.520
B
D
17
36
3.252
4.127
-0.635
-0.587
CC_DG24DT25:DA36DC17_DB
13
1.921
-3.966
27.790
-2.148
1.745
3.321
32.495
C
C
25
26
9.113
D
D
36
35
3.130
5.079
-0.148
1.506
CC_DT25DA26:DT35DA36_DD
14
0.303
-0.544
32.105
1.809
0.316
3.569
42.601
C
C
26
27
0.589
D
D
35
34
3.539
0.428
-0.584
0.747
CC_DA26DC27:DG34DT35_DD
15
-1.986
2.734
42.554
0.981
0.587
3.931
39.369
C
C
27
28
4.631
D
D
34
33
3.752
3.115
1.299
1.548
CC_DC27DC28:DG33DG34_DD
16
2.498
-3.714
39.174
1.863
-1.580
3.224
37.521
C
C
28
29
-0.331
D
D
33
32
3.252
-0.213
-0.349
2.524
CC_DC28DG29:DC32DG33_DD
17
1.325
-2.061
37.498
3.952
0.713
3.821
41.254
C
C
29
30
9.862
D
D
32
31
3.462
6.908
-0.284
2.448
CC_DG29DA30:DT31DC32_DD
18
-4.023
5.743
40.505
2.638
-0.084
software
diffrn_source
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Refinement description
Data collection
Database references
Derived calculations
1
0
2003-03-04
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
1
4
2019-07-24
1
5
2024-02-14
_diffrn_source.pdbx_synchrotron_site
_software.classification
_software.name
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2002-03-05
REL
REL
CA
CALCIUM ION
NA
SODIUM ION
HOH
water
CA
101
2
CA
CA
101
A
CA
102
2
CA
CA
102
B
CA
104
2
CA
CA
104
C
CA
103
2
CA
CA
103
D
NA
105
3
NA
NA
105
D
NA
106
3
NA
NA
106
D
HOH
501
4
HOH
HOH
501
A
HOH
503
4
HOH
HOH
503
A
HOH
504
4
HOH
HOH
504
A
HOH
514
4
HOH
HOH
514
A
HOH
518
4
HOH
HOH
518
A
HOH
521
4
HOH
HOH
521
A
HOH
522
4
HOH
HOH
522
A
HOH
526
4
HOH
HOH
526
A
HOH
527
4
HOH
HOH
527
A
HOH
540
4
HOH
HOH
540
A
HOH
541
4
HOH
HOH
541
A
HOH
542
4
HOH
HOH
542
A
HOH
543
4
HOH
HOH
543
A
HOH
546
4
HOH
HOH
546
A
HOH
548
4
HOH
HOH
548
A
HOH
549
4
HOH
HOH
549
A
HOH
551
4
HOH
HOH
551
A
HOH
554
4
HOH
HOH
554
A
HOH
555
4
HOH
HOH
555
A
HOH
561
4
HOH
HOH
561
A
HOH
562
4
HOH
HOH
562
A
HOH
563
4
HOH
HOH
563
A
HOH
576
4
HOH
HOH
576
A
HOH
577
4
HOH
HOH
577
A
HOH
578
4
HOH
HOH
578
A
HOH
580
4
HOH
HOH
580
A
HOH
588
4
HOH
HOH
588
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
605
4
HOH
HOH
605
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
627
4
HOH
HOH
627
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
636
4
HOH
HOH
636
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
657
4
HOH
HOH
657
A
HOH
661
4
HOH
HOH
661
A
HOH
666
4
HOH
HOH
666
A
HOH
508
4
HOH
HOH
508
B
HOH
511
4
HOH
HOH
511
B
HOH
512
4
HOH
HOH
512
B
HOH
519
4
HOH
HOH
519
B
HOH
523
4
HOH
HOH
523
B
HOH
525
4
HOH
HOH
525
B
HOH
530
4
HOH
HOH
530
B
HOH
538
4
HOH
HOH
538
B
HOH
547
4
HOH
HOH
547
B
HOH
550
4
HOH
HOH
550
B
HOH
552
4
HOH
HOH
552
B
HOH
553
4
HOH
HOH
553
B
HOH
565
4
HOH
HOH
565
B
HOH
566
4
HOH
HOH
566
B
HOH
567
4
HOH
HOH
567
B
HOH
589
4
HOH
HOH
589
B
HOH
590
4
HOH
HOH
590
B
HOH
591
4
HOH
HOH
591
B
HOH
592
4
HOH
HOH
592
B
HOH
606
4
HOH
HOH
606
B
HOH
607
4
HOH
HOH
607
B
HOH
608
4
HOH
HOH
608
B
HOH
620
4
HOH
HOH
620
B
HOH
621
4
HOH
HOH
621
B
HOH
622
4
HOH
HOH
622
B
HOH
623
4
HOH
HOH
623
B
HOH
629
4
HOH
HOH
629
B
HOH
630
4
HOH
HOH
630
B
HOH
631
4
HOH
HOH
631
B
HOH
640
4
HOH
HOH
640
B
HOH
641
4
HOH
HOH
641
B
HOH
642
4
HOH
HOH
642
B
HOH
645
4
HOH
HOH
645
B
HOH
647
4
HOH
HOH
647
B
HOH
658
4
HOH
HOH
658
B
HOH
659
4
HOH
HOH
659
B
HOH
662
4
HOH
HOH
662
B
HOH
507
4
HOH
HOH
507
C
HOH
517
4
HOH
HOH
517
C
HOH
524
4
HOH
HOH
524
C
HOH
531
4
HOH
HOH
531
C
HOH
532
4
HOH
HOH
532
C
HOH
534
4
HOH
HOH
534
C
HOH
536
4
HOH
HOH
536
C
HOH
537
4
HOH
HOH
537
C
HOH
556
4
HOH
HOH
556
C
HOH
557
4
HOH
HOH
557
C
HOH
564
4
HOH
HOH
564
C
HOH
568
4
HOH
HOH
568
C
HOH
570
4
HOH
HOH
570
C
HOH
571
4
HOH
HOH
571
C
HOH
573
4
HOH
HOH
573
C
HOH
582
4
HOH
HOH
582
C
HOH
583
4
HOH
HOH
583
C
HOH
584
4
HOH
HOH
584
C
HOH
587
4
HOH
HOH
587
C
HOH
593
4
HOH
HOH
593
C
HOH
594
4
HOH
HOH
594
C
HOH
596
4
HOH
HOH
596
C
HOH
597
4
HOH
HOH
597
C
HOH
598
4
HOH
HOH
598
C
HOH
599
4
HOH
HOH
599
C
HOH
603
4
HOH
HOH
603
C
HOH
609
4
HOH
HOH
609
C
HOH
610
4
HOH
HOH
610
C
HOH
612
4
HOH
HOH
612
C
HOH
617
4
HOH
HOH
617
C
HOH
618
4
HOH
HOH
618
C
HOH
637
4
HOH
HOH
637
C
HOH
638
4
HOH
HOH
638
C
HOH
646
4
HOH
HOH
646
C
HOH
654
4
HOH
HOH
654
C
HOH
656
4
HOH
HOH
656
C
HOH
667
4
HOH
HOH
667
C
HOH
668
4
HOH
HOH
668
C
HOH
502
4
HOH
HOH
502
D
HOH
505
4
HOH
HOH
505
D
HOH
506
4
HOH
HOH
506
D
HOH
509
4
HOH
HOH
509
D
HOH
510
4
HOH
HOH
510
D
HOH
513
4
HOH
HOH
513
D
HOH
515
4
HOH
HOH
515
D
HOH
516
4
HOH
HOH
516
D
HOH
520
4
HOH
HOH
520
D
HOH
528
4
HOH
HOH
528
D
HOH
529
4
HOH
HOH
529
D
HOH
533
4
HOH
HOH
533
D
HOH
535
4
HOH
HOH
535
D
HOH
539
4
HOH
HOH
539
D
HOH
544
4
HOH
HOH
544
D
HOH
545
4
HOH
HOH
545
D
HOH
558
4
HOH
HOH
558
D
HOH
559
4
HOH
HOH
559
D
HOH
560
4
HOH
HOH
560
D
HOH
569
4
HOH
HOH
569
D
HOH
572
4
HOH
HOH
572
D
HOH
574
4
HOH
HOH
574
D
HOH
575
4
HOH
HOH
575
D
HOH
579
4
HOH
HOH
579
D
HOH
581
4
HOH
HOH
581
D
HOH
585
4
HOH
HOH
585
D
HOH
586
4
HOH
HOH
586
D
HOH
595
4
HOH
HOH
595
D
HOH
600
4
HOH
HOH
600
D
HOH
604
4
HOH
HOH
604
D
HOH
611
4
HOH
HOH
611
D
HOH
613
4
HOH
HOH
613
D
HOH
614
4
HOH
HOH
614
D
HOH
615
4
HOH
HOH
615
D
HOH
616
4
HOH
HOH
616
D
HOH
619
4
HOH
HOH
619
D
HOH
626
4
HOH
HOH
626
D
HOH
628
4
HOH
HOH
628
D
HOH
635
4
HOH
HOH
635
D
HOH
639
4
HOH
HOH
639
D
HOH
643
4
HOH
HOH
643
D
HOH
644
4
HOH
HOH
644
D
HOH
648
4
HOH
HOH
648
D
HOH
649
4
HOH
HOH
649
D
HOH
650
4
HOH
HOH
650
D
HOH
651
4
HOH
HOH
651
D
HOH
655
4
HOH
HOH
655
D
HOH
660
4
HOH
HOH
660
D
HOH
663
4
HOH
HOH
663
D
HOH
664
4
HOH
HOH
664
D
HOH
665
4
HOH
HOH
665
D
T
1
n
1
DT
1
A
C
2
n
2
DC
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
T
5
n
5
DT
5
A
A
6
n
6
DA
6
A
C
7
n
7
DC
7
A
C
8
n
8
DC
8
A
G
9
n
9
DG
9
A
A
10
n
10
DA
10
A
T
11
n
1
DT
11
B
C
12
n
2
DC
12
B
G
13
n
3
DG
13
B
G
14
n
4
DG
14
B
T
15
n
5
DT
15
B
A
16
n
6
DA
16
B
C
17
n
7
DC
17
B
C
18
n
8
DC
18
B
G
19
n
9
DG
19
B
A
20
n
10
DA
20
B
T
21
n
1
DT
21
C
C
22
n
2
DC
22
C
G
23
n
3
DG
23
C
G
24
n
4
DG
24
C
T
25
n
5
DT
25
C
A
26
n
6
DA
26
C
C
27
n
7
DC
27
C
C
28
n
8
DC
28
C
G
29
n
9
DG
29
C
A
30
n
10
DA
30
C
T
31
n
1
DT
31
D
C
32
n
2
DC
32
D
G
33
n
3
DG
33
D
G
34
n
4
DG
34
D
T
35
n
5
DT
35
D
A
36
n
6
DA
36
D
C
37
n
7
DC
37
D
C
38
n
8
DC
38
D
G
39
n
9
DG
39
D
A
40
n
10
DA
40
D
author_defined_assembly
4
tetrameric
A
HOH
503
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
A
HOH
540
K
O
HOH
1_555
138.8
A
HOH
503
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
A
HOH
541
K
O
HOH
1_555
74.9
A
HOH
540
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
A
HOH
541
K
O
HOH
1_555
71.8
A
HOH
503
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
A
HOH
542
K
O
HOH
1_555
141.0
A
HOH
540
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
A
HOH
542
K
O
HOH
1_555
73.7
A
HOH
541
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
A
HOH
542
K
O
HOH
1_555
143.8
A
HOH
503
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
A
HOH
543
K
O
HOH
1_555
77.9
A
HOH
540
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
A
HOH
543
K
O
HOH
1_555
87.5
A
HOH
541
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
A
HOH
543
K
O
HOH
1_555
104.4
A
HOH
542
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
A
HOH
543
K
O
HOH
1_555
84.5
A
HOH
503
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
D
HOH
502
N
O
HOH
1_555
74.2
A
HOH
540
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
D
HOH
502
N
O
HOH
1_555
146.5
A
HOH
541
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
D
HOH
502
N
O
HOH
1_555
137.5
A
HOH
542
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
D
HOH
502
N
O
HOH
1_555
73.7
A
HOH
543
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
D
HOH
502
N
O
HOH
1_555
96.8
A
HOH
503
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
D
HOH
544
N
O
HOH
1_555
109.2
A
HOH
540
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
D
HOH
544
N
O
HOH
1_555
89.2
A
HOH
541
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
D
HOH
544
N
O
HOH
1_555
81.5
A
HOH
542
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
D
HOH
544
N
O
HOH
1_555
87.6
A
HOH
543
K
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
D
HOH
544
N
O
HOH
1_555
172.0
D
HOH
502
N
O
HOH
1_555
A
CA
101
E
CA
CA
1_555
D
HOH
544
N
O
HOH
1_555
82.0
A
HOH
577
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
A
HOH
588
K
O
HOH
1_555
81.1
A
HOH
577
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
512
L
O
HOH
1_555
74.8
A
HOH
588
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
512
L
O
HOH
1_555
134.4
A
HOH
577
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
589
L
O
HOH
1_555
162.7
A
HOH
588
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
589
L
O
HOH
1_555
106.6
B
HOH
512
L
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
589
L
O
HOH
1_555
89.2
A
HOH
577
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
590
L
O
HOH
1_555
81.2
A
HOH
588
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
590
L
O
HOH
1_555
68.8
B
HOH
512
L
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
590
L
O
HOH
1_555
69.7
B
HOH
589
L
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
590
L
O
HOH
1_555
87.1
A
HOH
577
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
591
L
O
HOH
1_555
121.8
A
HOH
588
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
591
L
O
HOH
1_555
76.9
B
HOH
512
L
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
591
L
O
HOH
1_555
148.5
B
HOH
589
L
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
591
L
O
HOH
1_555
75.4
B
HOH
590
L
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
591
L
O
HOH
1_555
134.9
A
HOH
577
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
592
L
O
HOH
1_555
78.4
A
HOH
588
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
592
L
O
HOH
1_555
138.5
B
HOH
512
L
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
592
L
O
HOH
1_555
73.0
B
HOH
589
L
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
592
L
O
HOH
1_555
103.6
B
HOH
590
L
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
592
L
O
HOH
1_555
141.0
B
HOH
591
L
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
B
HOH
592
L
O
HOH
1_555
83.9
A
HOH
627
K
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
B
HOH
659
L
O
HOH
1_555
63.7
A
HOH
627
K
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
D
HOH
628
N
O
HOH
1_555
113.3
B
HOH
659
L
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
D
HOH
628
N
O
HOH
1_555
72.8
A
HOH
627
K
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
D
HOH
651
N
O
HOH
1_555
95.5
B
HOH
659
L
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
D
HOH
651
N
O
HOH
1_555
132.6
D
HOH
628
N
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
D
HOH
651
N
O
HOH
1_555
78.8
A
HOH
627
K
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
D
HOH
660
N
O
HOH
1_555
159.5
B
HOH
659
L
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
D
HOH
660
N
O
HOH
1_555
131.6
D
HOH
628
N
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
D
HOH
660
N
O
HOH
1_555
86.3
D
HOH
651
N
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
D
HOH
660
N
O
HOH
1_555
82.1
B
HOH
538
L
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
531
M
O
HOH
1_555
139.5
B
HOH
538
L
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
582
M
O
HOH
1_555
144.5
C
HOH
531
M
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
582
M
O
HOH
1_555
70.4
B
HOH
538
L
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
583
M
O
HOH
1_555
69.3
C
HOH
531
M
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
583
M
O
HOH
1_555
85.7
C
HOH
582
M
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
583
M
O
HOH
1_555
144.5
B
HOH
538
L
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
584
M
O
HOH
1_555
96.1
C
HOH
531
M
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
584
M
O
HOH
1_555
108.6
C
HOH
582
M
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
584
M
O
HOH
1_555
86.8
C
HOH
583
M
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
584
M
O
HOH
1_555
76.2
B
HOH
538
L
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
587
M
O
HOH
1_555
87.8
C
HOH
531
M
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
587
M
O
HOH
1_555
72.7
C
HOH
582
M
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
587
M
O
HOH
1_555
85.3
C
HOH
583
M
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
587
M
O
HOH
1_555
112.8
C
HOH
584
M
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
C
HOH
587
M
O
HOH
1_555
171.0
C
HOH
570
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
C
HOH
571
M
O
HOH
1_555
79.4
C
HOH
570
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
515
N
O
HOH
1_555
101.2
C
HOH
571
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
515
N
O
HOH
1_555
78.0
C
HOH
570
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
572
N
O
HOH
1_555
106.3
C
HOH
571
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
572
N
O
HOH
1_555
75.4
D
HOH
515
N
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
572
N
O
HOH
1_555
137.0
C
HOH
570
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
581
N
O
HOH
1_555
91.9
C
HOH
571
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
581
N
O
HOH
1_555
144.0
D
HOH
515
N
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
581
N
O
HOH
1_555
138.0
D
HOH
572
N
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
581
N
O
HOH
1_555
73.7
C
HOH
570
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
585
N
O
HOH
1_555
173.0
C
HOH
571
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
585
N
O
HOH
1_555
94.4
D
HOH
515
N
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
585
N
O
HOH
1_555
80.5
D
HOH
572
N
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
585
N
O
HOH
1_555
68.7
D
HOH
581
N
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
585
N
O
HOH
1_555
91.3
C
HOH
570
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
586
N
O
HOH
1_555
78.3
C
HOH
571
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
586
N
O
HOH
1_555
135.8
D
HOH
515
N
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
586
N
O
HOH
1_555
69.7
D
HOH
572
N
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
586
N
O
HOH
1_555
147.8
D
HOH
581
N
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
586
N
O
HOH
1_555
74.3
D
HOH
585
N
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
D
HOH
586
N
O
HOH
1_555
108.6
C
HOH
610
M
O
HOH
1_555
D
NA
105
I
NA
NA
1_555
C
HOH
612
M
O
HOH
1_555
85.4
C
HOH
610
M
O
HOH
1_555
D
NA
105
I
NA
NA
1_555
D
HOH
611
N
O
HOH
1_555
168.1
C
HOH
612
M
O
HOH
1_555
D
NA
105
I
NA
NA
1_555
D
HOH
611
N
O
HOH
1_555
85.2
C
HOH
610
M
O
HOH
1_555
D
NA
105
I
NA
NA
1_555
D
HOH
613
N
O
HOH
1_555
106.7
C
HOH
612
M
O
HOH
1_555
D
NA
105
I
NA
NA
1_555
D
HOH
613
N
O
HOH
1_555
132.3
D
HOH
611
N
O
HOH
1_555
D
NA
105
I
NA
NA
1_555
D
HOH
613
N
O
HOH
1_555
84.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
4.55
0.60
119.90
124.45
A
A
A
N3
C4
O4
DT
DT
DT
1
1
1
N
1
-4.90
0.80
105.90
101.00
A
A
A
O4'
C1'
C2'
DC
DC
DC
2
2
2
N
1
-4.22
0.70
108.00
103.78
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
3.82
0.50
119.90
123.72
A
A
A
C2
N3
C4
DC
DC
DC
2
2
2
N
1
7.51
1.20
119.70
127.21
A
A
A
C3'
O3'
P
DG
DG
DT
4
4
5
Y
1
-9.25
0.90
105.70
96.45
A
A
A
O5'
P
OP1
DT
DT
DT
5
5
5
N
1
3.76
0.60
119.90
123.66
A
A
A
N3
C4
O4
DT
DT
DT
5
5
5
N
1
10.90
1.10
110.50
121.40
A
A
A
O3'
P
OP2
DT
DA
DA
5
6
6
Y
1
-5.43
0.90
105.70
100.27
A
A
A
O5'
P
OP1
DA
DA
DA
6
6
6
N
1
-5.07
0.80
102.40
97.33
A
A
A
C3'
C2'
C1'
DA
DA
DA
6
6
6
N
1
3.90
0.30
108.30
112.20
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
8.88
1.40
114.30
123.18
A
A
A
N1
C1'
C2'
DC
DC
DC
7
7
7
N
1
-7.40
0.70
108.00
100.60
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
6.60
1.10
109.80
116.40
A
A
A
C5'
C4'
O4'
DG
DG
DG
9
9
9
N
1
-6.51
0.70
108.00
101.49
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
7.80
1.10
110.50
118.30
B
B
B
O3'
P
OP2
DT
DC
DC
11
12
12
Y
1
8.47
1.20
110.70
119.17
B
B
B
O5'
P
OP1
DG
DG
DG
13
13
13
N
1
-6.32
0.70
108.00
101.68
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
1
-6.40
0.70
108.00
101.60
B
B
B
O4'
C1'
N1
DT
DT
DT
15
15
15
N
1
2.24
0.30
108.30
110.54
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
1
-7.91
0.70
108.00
100.09
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
9.34
1.50
119.60
128.94
B
B
B
OP1
P
OP2
DG
DG
DG
19
19
19
N
1
2.89
0.30
108.30
111.19
B
B
B
O4'
C1'
N9
DG
DG
DG
19
19
19
N
1
3.60
0.60
114.60
118.20
C
C
C
N1
C2
N3
DT
DT
DT
21
21
21
N
1
-5.52
0.70
108.00
102.48
C
C
C
O4'
C1'
N9
DG
DG
DG
24
24
24
N
1
4.41
0.60
119.90
124.31
C
C
C
N1
C6
O6
DG
DG
DG
24
24
24
N
1
-4.15
0.60
128.60
124.45
C
C
C
C5
C6
O6
DG
DG
DG
24
24
24
N
1
11.61
1.50
119.60
131.21
C
C
C
OP1
P
OP2
DT
DT
DT
25
25
25
N
1
-6.49
0.70
108.00
101.51
C
C
C
O4'
C1'
N1
DT
DT
DT
25
25
25
N
1
-6.40
0.70
108.00
101.60
C
C
C
O4'
C1'
N1
DC
DC
DC
27
27
27
N
1
-5.18
0.70
108.00
102.82
C
C
C
O4'
C1'
N1
DC
DC
DC
28
28
28
N
1
-5.67
0.70
108.00
102.33
C
C
C
O4'
C1'
N9
DG
DG
DG
29
29
29
N
1
2.97
0.30
108.30
111.27
D
D
D
O4'
C1'
N1
DT
DT
DT
31
31
31
N
1
3.80
0.60
119.00
122.80
D
D
D
C4
C5
C7
DT
DT
DT
31
31
31
N
1
-4.94
0.60
122.90
117.96
D
D
D
C6
C5
C7
DT
DT
DT
31
31
31
N
1
-4.73
0.70
108.00
103.27
D
D
D
O4'
C1'
N1
DC
DC
DC
32
32
32
N
1
-6.66
0.70
108.00
101.34
D
D
D
O4'
C1'
N9
DG
DG
DG
34
34
34
N
1
-5.61
0.70
108.00
102.39
D
D
D
O4'
C1'
N1
DT
DT
DT
35
35
35
N
1
-7.43
0.70
108.00
100.57
D
D
D
O4'
C1'
N1
DC
DC
DC
38
38
38
N
1
-4.57
0.70
108.00
103.43
D
D
D
O4'
C1'
N9
DG
DG
DG
39
39
39
N
1
9.76
1.50
119.60
129.36
D
D
D
OP1
P
OP2
DA
DA
DA
40
40
40
N
1
A
A
O3'
C3'
DT
DT
1
1
-0.050
0.006
1.419
1.369
N
1
A
A
O3'
P
DT
DC
1
2
0.084
0.012
1.607
1.691
Y
1
A
A
O3'
C3'
DC
DC
8
8
-0.039
0.006
1.419
1.380
N
1
A
A
O3'
C3'
DG
DG
9
9
-0.047
0.006
1.419
1.372
N
1
D
D
O3'
C3'
DA
DA
36
36
-0.045
0.006
1.419
1.374
N
18.270
0.26
0.00
-0.32
1.15
0.00
-1.64
0.929
0.858
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.29726
0.22821
0.2314
0.23144
1.85
15.00
440
9180
8780
4.8
97.35
5.120
0.159
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.195
0.189
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.85
15.00
168
982
6
808
0
0.015
0.021
900
0.001
0.020
372
2.641
3.000
1372
1.320
3.000
936
0.081
0.200
120
0.015
0.020
412
0.348
0.300
275
0.220
0.300
458
0.180
0.500
136
0.037
0.500
3
0.133
0.300
34
0.211
0.300
14
0.230
0.500
13
2.027
3.000
900
2.520
4.500
1372
0.303
0.246
1.948
73
1281
10
1.85
15.0
1L4J
9224
8780
2.0
2.0
0.062
1
14.25
3.0
97.35
0.199
1.85
2.00
5.45
1913
3.0
98.6
refinement
REFMAC
5.0
data reduction
XDS
refinement
XTALVIEW
data collection
MAR345
data scaling
XDS
Holliday Junction TCGGTACCGA with Na and Ca Binding Sites.
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
biological unit is composed of 4 strands
metalc
2.650
A
CA
101
E
CA
CA
1_555
A
HOH
503
K
O
HOH
1_555
metalc
2.393
A
CA
101
E
CA
CA
1_555
A
HOH
540
K
O
HOH
1_555
metalc
2.540
A
CA
101
E
CA
CA
1_555
A
HOH
541
K
O
HOH
1_555
metalc
2.299
A
CA
101
E
CA
CA
1_555
A
HOH
542
K
O
HOH
1_555
metalc
2.090
A
CA
101
E
CA
CA
1_555
A
HOH
543
K
O
HOH
1_555
metalc
2.458
A
CA
101
E
CA
CA
1_555
D
HOH
502
N
O
HOH
1_555
metalc
2.424
A
CA
101
E
CA
CA
1_555
D
HOH
544
N
O
HOH
1_555
metalc
2.662
A
HOH
577
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
metalc
2.608
A
HOH
588
K
O
HOH
1_555
B
CA
102
F
CA
CA
1_555
metalc
2.552
A
HOH
627
K
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
metalc
2.456
B
CA
102
F
CA
CA
1_555
B
HOH
512
L
O
HOH
1_555
metalc
2.395
B
CA
102
F
CA
CA
1_555
B
HOH
589
L
O
HOH
1_555
metalc
2.482
B
CA
102
F
CA
CA
1_555
B
HOH
590
L
O
HOH
1_555
metalc
2.364
B
CA
102
F
CA
CA
1_555
B
HOH
591
L
O
HOH
1_555
metalc
2.165
B
CA
102
F
CA
CA
1_555
B
HOH
592
L
O
HOH
1_555
metalc
2.354
B
HOH
538
L
O
HOH
1_555
C
CA
104
G
CA
CA
1_555
metalc
2.312
B
HOH
659
L
O
HOH
1_555
D
NA
106
J
NA
NA
1_555
metalc
2.403
C
CA
104
G
CA
CA
1_555
C
HOH
531
M
O
HOH
1_555
metalc
2.402
C
CA
104
G
CA
CA
1_555
C
HOH
582
M
O
HOH
1_555
metalc
2.384
C
CA
104
G
CA
CA
1_555
C
HOH
583
M
O
HOH
1_555
metalc
2.209
C
CA
104
G
CA
CA
1_555
C
HOH
584
M
O
HOH
1_555
metalc
2.434
C
CA
104
G
CA
CA
1_555
C
HOH
587
M
O
HOH
1_555
metalc
2.308
C
HOH
570
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
metalc
2.443
C
HOH
571
M
O
HOH
1_555
D
CA
103
H
CA
CA
1_555
metalc
2.142
C
HOH
610
M
O
HOH
1_555
D
NA
105
I
NA
NA
1_555
metalc
2.560
C
HOH
612
M
O
HOH
1_555
D
NA
105
I
NA
NA
1_555
metalc
2.591
D
CA
103
H
CA
CA
1_555
D
HOH
515
N
O
HOH
1_555
metalc
2.237
D
CA
103
H
CA
CA
1_555
D
HOH
572
N
O
HOH
1_555
metalc
2.351
D
CA
103
H
CA
CA
1_555
D
HOH
581
N
O
HOH
1_555
metalc
2.252
D
CA
103
H
CA
CA
1_555
D
HOH
585
N
O
HOH
1_555
metalc
2.509
D
CA
103
H
CA
CA
1_555
D
HOH
586
N
O
HOH
1_555
metalc
2.187
D
NA
105
I
NA
NA
1_555
D
HOH
611
N
O
HOH
1_555
metalc
2.552
D
NA
105
I
NA
NA
1_555
D
HOH
613
N
O
HOH
1_555
metalc
2.720
D
NA
106
J
NA
NA
1_555
D
HOH
628
N
O
HOH
1_555
metalc
2.418
D
NA
106
J
NA
NA
1_555
D
HOH
651
N
O
HOH
1_555
metalc
2.513
D
NA
106
J
NA
NA
1_555
D
HOH
660
N
O
HOH
1_555
hydrog
WATSON-CRICK
A
DT
1
A
N3
DT
1
1_555
D
DA
40
D
N1
DA
10
1_555
hydrog
WATSON-CRICK
A
DT
1
A
O4
DT
1
1_555
D
DA
40
D
N6
DA
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
D
DG
39
D
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
D
DG
39
D
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
D
DG
39
D
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
D
DC
38
D
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
D
DC
38
D
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
D
DC
38
D
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
D
DC
37
D
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
D
DC
37
D
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
D
DC
37
D
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DT
5
A
N3
DT
5
1_555
B
DA
16
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
5
A
O4
DT
5
1_555
B
DA
16
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
15
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
15
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
B
DG
14
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
B
DG
14
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
B
DG
14
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
13
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
13
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
13
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
12
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
12
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
12
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N1
DA
10
1_555
B
DT
11
B
N3
DT
1
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N6
DA
10
1_555
B
DT
11
B
O4
DT
1
1_555
hydrog
WATSON-CRICK
B
DC
17
B
N3
DC
7
1_555
C
DG
24
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
17
B
N4
DC
7
1_555
C
DG
24
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
17
B
O2
DC
7
1_555
C
DG
24
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
18
B
N3
DC
8
1_555
C
DG
23
C
N1
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
18
B
N4
DC
8
1_555
C
DG
23
C
O6
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
18
B
O2
DC
8
1_555
C
DG
23
C
N2
DG
3
1_555
hydrog
WATSON-CRICK
B
DG
19
B
N1
DG
9
1_555
C
DC
22
C
N3
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
19
B
N2
DG
9
1_555
C
DC
22
C
O2
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
19
B
O6
DG
9
1_555
C
DC
22
C
N4
DC
2
1_555
hydrog
WATSON-CRICK
B
DA
20
B
N1
DA
10
1_555
C
DT
21
C
N3
DT
1
1_555
hydrog
WATSON-CRICK
B
DA
20
B
N6
DA
10
1_555
C
DT
21
C
O4
DT
1
1_555
hydrog
WATSON-CRICK
C
DT
25
C
N3
DT
5
1_555
D
DA
36
D
N1
DA
6
1_555
hydrog
WATSON-CRICK
C
DT
25
C
O4
DT
5
1_555
D
DA
36
D
N6
DA
6
1_555
hydrog
WATSON-CRICK
C
DA
26
C
N1
DA
6
1_555
D
DT
35
D
N3
DT
5
1_555
hydrog
WATSON-CRICK
C
DA
26
C
N6
DA
6
1_555
D
DT
35
D
O4
DT
5
1_555
hydrog
WATSON-CRICK
C
DC
27
C
N3
DC
7
1_555
D
DG
34
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
27
C
N4
DC
7
1_555
D
DG
34
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
27
C
O2
DC
7
1_555
D
DG
34
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
28
C
N3
DC
8
1_555
D
DG
33
D
N1
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
28
C
N4
DC
8
1_555
D
DG
33
D
O6
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
28
C
O2
DC
8
1_555
D
DG
33
D
N2
DG
3
1_555
hydrog
WATSON-CRICK
C
DG
29
C
N1
DG
9
1_555
D
DC
32
D
N3
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
29
C
N2
DG
9
1_555
D
DC
32
D
O2
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
29
C
O6
DG
9
1_555
D
DC
32
D
N4
DC
2
1_555
hydrog
WATSON-CRICK
C
DA
30
C
N1
DA
10
1_555
D
DT
31
D
N3
DT
1
1_555
hydrog
WATSON-CRICK
C
DA
30
C
N6
DA
10
1_555
D
DT
31
D
O4
DT
1
1_555
DNA
Holliday Junction, DNA
1L4J
PDB
1
1L4J
1
10
1L4J
1
10
1L4J
A
1
1
10
11
20
1L4J
11
20
1L4J
B
1
1
10
21
30
1L4J
21
30
1L4J
C
1
1
10
31
40
1L4J
31
40
1L4J
D
1
1
10
BINDING SITE FOR RESIDUE CA A 101
A
CA
101
Software
7
BINDING SITE FOR RESIDUE CA B 102
B
CA
102
Software
7
BINDING SITE FOR RESIDUE CA D 103
D
CA
103
Software
7
BINDING SITE FOR RESIDUE CA C 104
C
CA
104
Software
6
BINDING SITE FOR RESIDUE NA D 105
D
NA
105
Software
5
BINDING SITE FOR RESIDUE NA D 106
D
NA
106
Software
5
A
HOH
503
K
HOH
7
1_555
A
HOH
540
K
HOH
7
1_555
A
HOH
541
K
HOH
7
1_555
A
HOH
542
K
HOH
7
1_555
A
HOH
543
K
HOH
7
1_555
D
HOH
502
N
HOH
7
1_555
D
HOH
544
N
HOH
7
1_555
A
HOH
577
K
HOH
7
1_555
A
HOH
588
K
HOH
7
1_555
B
HOH
512
L
HOH
7
1_555
B
HOH
589
L
HOH
7
1_555
B
HOH
590
L
HOH
7
1_555
B
HOH
591
L
HOH
7
1_555
B
HOH
592
L
HOH
7
1_555
C
HOH
570
M
HOH
7
1_555
C
HOH
571
M
HOH
7
1_555
D
HOH
515
N
HOH
7
1_555
D
HOH
572
N
HOH
7
1_555
D
HOH
581
N
HOH
7
1_555
D
HOH
585
N
HOH
7
1_555
D
HOH
586
N
HOH
7
1_555
B
HOH
538
L
HOH
6
1_555
C
HOH
531
M
HOH
6
1_555
C
HOH
582
M
HOH
6
1_555
C
HOH
583
M
HOH
6
1_555
C
HOH
584
M
HOH
6
1_555
C
HOH
587
M
HOH
6
1_555
C
HOH
610
M
HOH
5
1_555
C
HOH
612
M
HOH
5
1_555
D
HOH
611
N
HOH
5
1_555
D
HOH
613
N
HOH
5
1_555
D
HOH
614
N
HOH
5
1_555
A
HOH
627
K
HOH
5
1_555
B
HOH
659
L
HOH
5
1_555
D
HOH
628
N
HOH
5
1_555
D
HOH
651
N
HOH
5
1_555
D
HOH
660
N
HOH
5
1_555
5
C 1 2 1