1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Hanzawa, H. Iwai, H. Takeuchi, K. Kuzuhara, T. Komano, H. Kohda, D. Inagaki, F. Natori, S. Arata, Y. Shimada, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE FEBS Lett. FEBLAL 0165 0014-5793 269 413 420 10.1016/0014-5793(90)81206-4 2401368 1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin. 1990 10.2210/pdb1l4v/pdb pdb_00001l4v 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 4086.713 Sapecin 1 nat polymer no no ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKAVCVCRN ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKAVCVCRN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Sarcophaga sample 7386 Sarcophaga peregrina database_2 pdbx_nmr_exptl_sample_conditions pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Experimental preparation 1 0 2002-03-27 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_exptl_sample_conditions.pressure_units RCSB Y PDBJ 2002-03-06 REL This structure was determined using standard 2D homonuclear techniques. structures with the lowest energy 100 18 DQF-COSY 2D NOESY HOHAHA PE-COSY 0 5 1 atm 303 K The structures are based on a total of 366 restraints, 338 are NOE-derived distance constraints, 28 dihedral angle restraints,26 distance restraints from hydrogen bonds. simulated annealing 12 closest to the average 3mM Sapecin CD3OH BRUNGER refinement X-PLOR 3.1 500 JEOL GSX ALA 1 n 1 ALA 1 A THR 2 n 2 THR 2 A CYS 3 n 3 CYS 3 A ASP 4 n 4 ASP 4 A LEU 5 n 5 LEU 5 A LEU 6 n 6 LEU 6 A SER 7 n 7 SER 7 A GLY 8 n 8 GLY 8 A THR 9 n 9 THR 9 A GLY 10 n 10 GLY 10 A ILE 11 n 11 ILE 11 A ASN 12 n 12 ASN 12 A HIS 13 n 13 HIS 13 A SER 14 n 14 SER 14 A ALA 15 n 15 ALA 15 A CYS 16 n 16 CYS 16 A ALA 17 n 17 ALA 17 A ALA 18 n 18 ALA 18 A HIS 19 n 19 HIS 19 A CYS 20 n 20 CYS 20 A LEU 21 n 21 LEU 21 A LEU 22 n 22 LEU 22 A ARG 23 n 23 ARG 23 A GLY 24 n 24 GLY 24 A ASN 25 n 25 ASN 25 A ARG 26 n 26 ARG 26 A GLY 27 n 27 GLY 27 A GLY 28 n 28 GLY 28 A TYR 29 n 29 TYR 29 A CYS 30 n 30 CYS 30 A ASN 31 n 31 ASN 31 A GLY 32 n 32 GLY 32 A LYS 33 n 33 LYS 33 A ALA 34 n 34 ALA 34 A VAL 35 n 35 VAL 35 A CYS 36 n 36 CYS 36 A VAL 37 n 37 VAL 37 A CYS 38 n 38 CYS 38 A ARG 39 n 39 ARG 39 A ASN 40 n 40 ASN 40 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 27 A N GLY 27 A O ARG 39 A O ARG 39 4 A A HD21 H ASN HIS 12 13 1.31 1 A ARG 23 0.304 SIDE CHAIN 1 A ARG 26 0.180 SIDE CHAIN 1 A ARG 39 0.288 SIDE CHAIN 2 A ARG 23 0.285 SIDE CHAIN 2 A ARG 26 0.282 SIDE CHAIN 3 A ARG 26 0.272 SIDE CHAIN 3 A ARG 39 0.115 SIDE CHAIN 4 A ARG 23 0.317 SIDE CHAIN 4 A ARG 26 0.309 SIDE CHAIN 4 A ARG 39 0.310 SIDE CHAIN 5 A ARG 23 0.294 SIDE CHAIN 5 A ARG 26 0.261 SIDE CHAIN 6 A ARG 23 0.313 SIDE CHAIN 6 A ARG 26 0.086 SIDE CHAIN 6 A ARG 39 0.318 SIDE CHAIN 7 A ARG 23 0.319 SIDE CHAIN 7 A ARG 26 0.299 SIDE CHAIN 7 A ARG 39 0.264 SIDE CHAIN 8 A ARG 26 0.303 SIDE CHAIN 8 A ARG 39 0.196 SIDE CHAIN 9 A ARG 23 0.195 SIDE CHAIN 9 A ARG 26 0.238 SIDE CHAIN 9 A ARG 39 0.315 SIDE CHAIN 10 A ARG 23 0.318 SIDE CHAIN 10 A ARG 26 0.211 SIDE CHAIN 10 A ARG 39 0.315 SIDE CHAIN 11 A ARG 23 0.287 SIDE CHAIN 11 A ARG 26 0.297 SIDE CHAIN 11 A ARG 39 0.115 SIDE CHAIN 12 A ARG 23 0.237 SIDE CHAIN 12 A ARG 26 0.301 SIDE CHAIN 12 A ARG 39 0.271 SIDE CHAIN 13 A ARG 23 0.313 SIDE CHAIN 13 A ARG 26 0.233 SIDE CHAIN 14 A ARG 23 0.318 SIDE CHAIN 14 A ARG 26 0.310 SIDE CHAIN 14 A ARG 39 0.291 SIDE CHAIN 15 A ARG 23 0.313 SIDE CHAIN 15 A ARG 26 0.278 SIDE CHAIN 15 A ARG 39 0.240 SIDE CHAIN 16 A ARG 23 0.220 SIDE CHAIN 16 A ARG 26 0.295 SIDE CHAIN 16 A ARG 39 0.275 SIDE CHAIN 17 A ARG 23 0.295 SIDE CHAIN 17 A ARG 26 0.145 SIDE CHAIN 17 A ARG 39 0.276 SIDE CHAIN 18 A ARG 23 0.246 SIDE CHAIN 18 A ARG 26 0.304 SIDE CHAIN 18 A ARG 39 0.315 SIDE CHAIN 1 A A CG ND1 HIS HIS 13 13 -0.109 0.015 1.369 1.260 N 1 A A CG ND1 HIS HIS 19 19 -0.108 0.015 1.369 1.261 N 2 A A CG ND1 HIS HIS 13 13 -0.109 0.015 1.369 1.260 N 2 A A CG ND1 HIS HIS 19 19 -0.108 0.015 1.369 1.261 N 3 A A CG ND1 HIS HIS 13 13 -0.108 0.015 1.369 1.261 N 3 A A CG ND1 HIS HIS 19 19 -0.109 0.015 1.369 1.260 N 4 A A CG ND1 HIS HIS 13 13 -0.111 0.015 1.369 1.258 N 4 A A CG ND1 HIS HIS 19 19 -0.108 0.015 1.369 1.261 N 5 A A CG ND1 HIS HIS 13 13 -0.110 0.015 1.369 1.259 N 5 A A CG ND1 HIS HIS 19 19 -0.111 0.015 1.369 1.258 N 6 A A CG ND1 HIS HIS 13 13 -0.107 0.015 1.369 1.262 N 6 A A CG ND1 HIS HIS 19 19 -0.109 0.015 1.369 1.260 N 7 A A CG ND1 HIS HIS 13 13 -0.109 0.015 1.369 1.260 N 7 A A CG ND1 HIS HIS 19 19 -0.109 0.015 1.369 1.260 N 8 A A CG ND1 HIS HIS 13 13 -0.109 0.015 1.369 1.260 N 8 A A CG ND1 HIS HIS 19 19 -0.110 0.015 1.369 1.259 N 9 A A CG ND1 HIS HIS 13 13 -0.108 0.015 1.369 1.261 N 9 A A CG ND1 HIS HIS 19 19 -0.109 0.015 1.369 1.260 N 10 A A CG ND1 HIS HIS 13 13 -0.108 0.015 1.369 1.261 N 10 A A CG ND1 HIS HIS 19 19 -0.109 0.015 1.369 1.260 N 11 A A CG ND1 HIS HIS 13 13 -0.110 0.015 1.369 1.259 N 11 A A CG ND1 HIS HIS 19 19 -0.110 0.015 1.369 1.259 N 12 A A CG ND1 HIS HIS 13 13 -0.109 0.015 1.369 1.260 N 12 A A CG ND1 HIS HIS 19 19 -0.110 0.015 1.369 1.259 N 13 A A CG ND1 HIS HIS 13 13 -0.109 0.015 1.369 1.260 N 13 A A CG ND1 HIS HIS 19 19 -0.106 0.015 1.369 1.263 N 14 A A CG ND1 HIS HIS 13 13 -0.107 0.015 1.369 1.262 N 14 A A CG ND1 HIS HIS 19 19 -0.109 0.015 1.369 1.260 N 15 A A CG ND1 HIS HIS 13 13 -0.108 0.015 1.369 1.261 N 15 A A CG ND1 HIS HIS 19 19 -0.107 0.015 1.369 1.262 N 16 A A CG ND1 HIS HIS 13 13 -0.109 0.015 1.369 1.260 N 16 A A CG ND1 HIS HIS 19 19 -0.109 0.015 1.369 1.260 N 17 A A CG ND1 HIS HIS 13 13 -0.111 0.015 1.369 1.258 N 17 A A CG ND1 HIS HIS 19 19 -0.108 0.015 1.369 1.261 N 18 A A CG ND1 HIS HIS 13 13 -0.111 0.015 1.369 1.258 N 18 A A CG ND1 HIS HIS 19 19 -0.110 0.015 1.369 1.259 N 1 A THR 2 -173.26 143.07 1 A LEU 5 -142.96 -52.38 1 A THR 9 -69.01 12.21 1 A HIS 13 -108.08 -63.71 1 A ASN 25 -111.15 -166.95 1 A LYS 33 -172.23 -36.51 1 A ALA 34 -163.33 43.86 2 A ASP 4 50.28 -171.93 2 A LEU 6 53.84 96.46 2 A ILE 11 45.77 95.90 2 A ASN 12 -152.33 64.48 2 A ASN 25 -118.47 -168.52 2 A LYS 33 -159.70 -32.62 2 A ALA 34 -167.54 23.34 2 A VAL 35 -104.45 74.54 2 A CYS 38 -57.15 -172.14 2 A ARG 39 -170.71 126.48 3 A CYS 3 52.27 -110.30 3 A ASP 4 -60.56 -163.39 3 A LEU 6 -164.31 -32.68 3 A ILE 11 -47.95 -12.47 3 A ASN 25 -114.20 -168.98 3 A LYS 33 -173.67 -35.26 3 A ALA 34 -151.26 7.53 4 A CYS 3 -77.67 30.16 4 A ASP 4 -173.58 74.29 4 A LEU 6 -132.91 -83.42 4 A ASN 12 -170.52 -178.78 4 A HIS 13 -153.38 -75.81 4 A ASN 25 -110.21 -166.05 4 A LYS 33 -170.62 -28.76 4 A ALA 34 -170.69 25.61 4 A CYS 38 -68.66 -172.34 4 A ARG 39 -172.75 112.98 5 A THR 2 -69.09 -167.23 5 A ASP 4 51.55 174.35 5 A LEU 5 -68.16 4.68 5 A LEU 6 -76.53 23.94 5 A ILE 11 -50.82 -178.74 5 A LYS 33 -177.59 -37.29 5 A ALA 34 -147.62 32.62 5 A ARG 39 -174.42 132.48 6 A THR 2 -47.66 155.87 6 A ASP 4 -171.84 -163.53 6 A LEU 5 -119.49 73.07 6 A LEU 6 -96.30 -77.48 6 A THR 9 -52.22 -74.80 6 A ASN 12 -170.24 18.83 6 A HIS 13 64.86 -7.22 6 A ALA 17 -47.39 -18.40 6 A ASN 25 -109.40 -165.57 6 A TYR 29 -171.28 144.78 6 A LYS 33 -175.51 -53.52 6 A ARG 39 -173.10 118.56 7 A THR 2 -39.44 149.35 7 A ASP 4 172.63 -98.44 7 A LEU 5 -173.73 -37.64 7 A HIS 13 -44.19 -19.01 7 A ASN 25 -115.69 -168.53 7 A LYS 33 -170.59 -37.41 7 A ALA 34 -170.85 24.64 8 A THR 2 48.56 93.91 8 A LEU 6 49.71 88.99 8 A THR 9 -158.46 -71.50 8 A LYS 33 -164.51 -59.44 8 A ARG 39 -176.03 149.72 9 A SER 7 179.44 54.56 9 A ASN 25 -116.49 -168.90 9 A LYS 33 -175.39 -33.42 9 A ALA 34 -151.46 32.52 9 A ARG 39 -173.65 149.00 10 A CYS 3 -91.76 36.68 10 A ASP 4 -168.74 115.73 10 A LEU 6 -148.76 -35.79 10 A ILE 11 -36.14 103.72 10 A HIS 13 45.52 -110.80 10 A LYS 33 -64.33 3.56 10 A ALA 34 72.40 43.04 10 A ARG 39 178.47 179.60 11 A THR 2 68.34 158.72 11 A CYS 3 -135.14 -33.47 11 A ASP 4 35.72 -116.61 11 A LEU 5 46.25 80.54 11 A LYS 33 -59.50 -1.03 11 A ALA 34 75.79 36.89 12 A ASP 4 164.26 -11.21 12 A LEU 5 -47.33 -77.79 12 A LEU 6 -147.98 55.28 12 A THR 9 43.15 21.53 12 A ALA 34 71.37 41.33 13 A CYS 3 -53.70 -170.69 13 A ASP 4 62.64 175.62 13 A ILE 11 12.71 107.30 13 A ASN 25 -108.99 -164.07 13 A CYS 30 -49.22 175.59 13 A ASN 31 -171.94 146.55 13 A LYS 33 -165.92 -32.99 13 A ALA 34 -164.02 22.82 13 A CYS 38 -56.98 -167.91 13 A ARG 39 -162.96 111.72 14 A THR 2 58.45 156.03 14 A LEU 6 -134.94 -43.09 14 A THR 9 -52.27 -93.34 14 A ILE 11 -104.58 68.93 14 A SER 14 -62.18 -70.95 14 A ASN 25 -120.26 -168.00 14 A LYS 33 -162.31 -53.56 15 A LEU 5 51.00 12.92 15 A THR 9 -44.68 -75.39 15 A ASN 12 -103.53 -75.60 15 A HIS 13 56.00 -74.11 15 A SER 14 -30.60 -76.33 15 A ASN 25 -116.15 -166.71 15 A LYS 33 -65.78 1.07 15 A ALA 34 70.77 33.44 15 A CYS 38 -52.28 -171.51 15 A ARG 39 -172.35 104.54 16 A THR 2 -48.33 162.66 16 A ASP 4 -170.58 137.92 16 A LEU 6 -64.64 3.15 16 A ILE 11 -76.51 48.54 16 A HIS 13 53.80 -79.04 16 A SER 14 -34.74 -30.37 16 A ALA 15 -49.45 -72.28 17 A ASP 4 45.05 -126.81 17 A LEU 5 -164.21 -48.44 17 A LEU 6 -157.61 41.94 17 A THR 9 -101.15 -88.34 17 A HIS 13 175.82 -44.91 17 A ASN 25 -123.53 -165.80 17 A LYS 33 -64.73 2.03 17 A ALA 34 71.51 42.66 17 A CYS 38 -69.45 -176.42 17 A ARG 39 -178.08 133.56 18 A ASP 4 -171.23 -163.21 18 A THR 9 44.81 73.12 18 A ASN 25 -115.90 -166.94 18 A ALA 34 74.40 41.64 SOLUTION STRUCTURE OF SAPECIN 1 N N A HIS 13 A HIS 13 HELX_P A ASN 25 A ASN 25 1 1 13 disulf 2.020 A CYS 3 A SG CYS 3 1_555 A CYS 30 A SG CYS 30 1_555 disulf 2.020 A CYS 16 A SG CYS 16 1_555 A CYS 36 A SG CYS 36 1_555 disulf 2.019 A CYS 20 A SG CYS 20 1_555 A CYS 38 A SG CYS 38 1_555 ANTIBIOTIC ANTIBACTERIAL PROTEIN, INSECT DEFENSIN, ANTIBIOTIC SAPE_SARPE UNP 1 55 P18313 ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKAVCVCRN 55 94 1L4V 1 40 P18313 A 1 1 40 2 anti-parallel A GLY 27 A GLY 27 A ASN 31 A ASN 31 A VAL 35 A VAL 35 A ARG 39 A ARG 39 1 P 1