1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Hanzawa, H.
Iwai, H.
Takeuchi, K.
Kuzuhara, T.
Komano, H.
Kohda, D.
Inagaki, F.
Natori, S.
Arata, Y.
Shimada, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
FEBS Lett.
FEBLAL
0165
0014-5793
269
413
420
10.1016/0014-5793(90)81206-4
2401368
1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin.
1990
10.2210/pdb1l4v/pdb
pdb_00001l4v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4086.713
Sapecin
1
nat
polymer
no
no
ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKAVCVCRN
ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKAVCVCRN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sarcophaga
sample
7386
Sarcophaga peregrina
database_2
pdbx_nmr_exptl_sample_conditions
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Experimental preparation
1
0
2002-03-27
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_exptl_sample_conditions.pressure_units
RCSB
Y
PDBJ
2002-03-06
REL
This structure was determined using standard 2D homonuclear techniques.
structures with the lowest energy
100
18
DQF-COSY
2D NOESY
HOHAHA
PE-COSY
0
5
1
atm
303
K
The structures are based on a total of 366 restraints, 338 are NOE-derived
distance constraints, 28 dihedral angle restraints,26 distance restraints
from hydrogen bonds.
simulated annealing
12
closest to the average
3mM Sapecin
CD3OH
BRUNGER
refinement
X-PLOR
3.1
500
JEOL
GSX
ALA
1
n
1
ALA
1
A
THR
2
n
2
THR
2
A
CYS
3
n
3
CYS
3
A
ASP
4
n
4
ASP
4
A
LEU
5
n
5
LEU
5
A
LEU
6
n
6
LEU
6
A
SER
7
n
7
SER
7
A
GLY
8
n
8
GLY
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
ILE
11
n
11
ILE
11
A
ASN
12
n
12
ASN
12
A
HIS
13
n
13
HIS
13
A
SER
14
n
14
SER
14
A
ALA
15
n
15
ALA
15
A
CYS
16
n
16
CYS
16
A
ALA
17
n
17
ALA
17
A
ALA
18
n
18
ALA
18
A
HIS
19
n
19
HIS
19
A
CYS
20
n
20
CYS
20
A
LEU
21
n
21
LEU
21
A
LEU
22
n
22
LEU
22
A
ARG
23
n
23
ARG
23
A
GLY
24
n
24
GLY
24
A
ASN
25
n
25
ASN
25
A
ARG
26
n
26
ARG
26
A
GLY
27
n
27
GLY
27
A
GLY
28
n
28
GLY
28
A
TYR
29
n
29
TYR
29
A
CYS
30
n
30
CYS
30
A
ASN
31
n
31
ASN
31
A
GLY
32
n
32
GLY
32
A
LYS
33
n
33
LYS
33
A
ALA
34
n
34
ALA
34
A
VAL
35
n
35
VAL
35
A
CYS
36
n
36
CYS
36
A
VAL
37
n
37
VAL
37
A
CYS
38
n
38
CYS
38
A
ARG
39
n
39
ARG
39
A
ASN
40
n
40
ASN
40
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
27
A
N
GLY
27
A
O
ARG
39
A
O
ARG
39
4
A
A
HD21
H
ASN
HIS
12
13
1.31
1
A
ARG
23
0.304
SIDE CHAIN
1
A
ARG
26
0.180
SIDE CHAIN
1
A
ARG
39
0.288
SIDE CHAIN
2
A
ARG
23
0.285
SIDE CHAIN
2
A
ARG
26
0.282
SIDE CHAIN
3
A
ARG
26
0.272
SIDE CHAIN
3
A
ARG
39
0.115
SIDE CHAIN
4
A
ARG
23
0.317
SIDE CHAIN
4
A
ARG
26
0.309
SIDE CHAIN
4
A
ARG
39
0.310
SIDE CHAIN
5
A
ARG
23
0.294
SIDE CHAIN
5
A
ARG
26
0.261
SIDE CHAIN
6
A
ARG
23
0.313
SIDE CHAIN
6
A
ARG
26
0.086
SIDE CHAIN
6
A
ARG
39
0.318
SIDE CHAIN
7
A
ARG
23
0.319
SIDE CHAIN
7
A
ARG
26
0.299
SIDE CHAIN
7
A
ARG
39
0.264
SIDE CHAIN
8
A
ARG
26
0.303
SIDE CHAIN
8
A
ARG
39
0.196
SIDE CHAIN
9
A
ARG
23
0.195
SIDE CHAIN
9
A
ARG
26
0.238
SIDE CHAIN
9
A
ARG
39
0.315
SIDE CHAIN
10
A
ARG
23
0.318
SIDE CHAIN
10
A
ARG
26
0.211
SIDE CHAIN
10
A
ARG
39
0.315
SIDE CHAIN
11
A
ARG
23
0.287
SIDE CHAIN
11
A
ARG
26
0.297
SIDE CHAIN
11
A
ARG
39
0.115
SIDE CHAIN
12
A
ARG
23
0.237
SIDE CHAIN
12
A
ARG
26
0.301
SIDE CHAIN
12
A
ARG
39
0.271
SIDE CHAIN
13
A
ARG
23
0.313
SIDE CHAIN
13
A
ARG
26
0.233
SIDE CHAIN
14
A
ARG
23
0.318
SIDE CHAIN
14
A
ARG
26
0.310
SIDE CHAIN
14
A
ARG
39
0.291
SIDE CHAIN
15
A
ARG
23
0.313
SIDE CHAIN
15
A
ARG
26
0.278
SIDE CHAIN
15
A
ARG
39
0.240
SIDE CHAIN
16
A
ARG
23
0.220
SIDE CHAIN
16
A
ARG
26
0.295
SIDE CHAIN
16
A
ARG
39
0.275
SIDE CHAIN
17
A
ARG
23
0.295
SIDE CHAIN
17
A
ARG
26
0.145
SIDE CHAIN
17
A
ARG
39
0.276
SIDE CHAIN
18
A
ARG
23
0.246
SIDE CHAIN
18
A
ARG
26
0.304
SIDE CHAIN
18
A
ARG
39
0.315
SIDE CHAIN
1
A
A
CG
ND1
HIS
HIS
13
13
-0.109
0.015
1.369
1.260
N
1
A
A
CG
ND1
HIS
HIS
19
19
-0.108
0.015
1.369
1.261
N
2
A
A
CG
ND1
HIS
HIS
13
13
-0.109
0.015
1.369
1.260
N
2
A
A
CG
ND1
HIS
HIS
19
19
-0.108
0.015
1.369
1.261
N
3
A
A
CG
ND1
HIS
HIS
13
13
-0.108
0.015
1.369
1.261
N
3
A
A
CG
ND1
HIS
HIS
19
19
-0.109
0.015
1.369
1.260
N
4
A
A
CG
ND1
HIS
HIS
13
13
-0.111
0.015
1.369
1.258
N
4
A
A
CG
ND1
HIS
HIS
19
19
-0.108
0.015
1.369
1.261
N
5
A
A
CG
ND1
HIS
HIS
13
13
-0.110
0.015
1.369
1.259
N
5
A
A
CG
ND1
HIS
HIS
19
19
-0.111
0.015
1.369
1.258
N
6
A
A
CG
ND1
HIS
HIS
13
13
-0.107
0.015
1.369
1.262
N
6
A
A
CG
ND1
HIS
HIS
19
19
-0.109
0.015
1.369
1.260
N
7
A
A
CG
ND1
HIS
HIS
13
13
-0.109
0.015
1.369
1.260
N
7
A
A
CG
ND1
HIS
HIS
19
19
-0.109
0.015
1.369
1.260
N
8
A
A
CG
ND1
HIS
HIS
13
13
-0.109
0.015
1.369
1.260
N
8
A
A
CG
ND1
HIS
HIS
19
19
-0.110
0.015
1.369
1.259
N
9
A
A
CG
ND1
HIS
HIS
13
13
-0.108
0.015
1.369
1.261
N
9
A
A
CG
ND1
HIS
HIS
19
19
-0.109
0.015
1.369
1.260
N
10
A
A
CG
ND1
HIS
HIS
13
13
-0.108
0.015
1.369
1.261
N
10
A
A
CG
ND1
HIS
HIS
19
19
-0.109
0.015
1.369
1.260
N
11
A
A
CG
ND1
HIS
HIS
13
13
-0.110
0.015
1.369
1.259
N
11
A
A
CG
ND1
HIS
HIS
19
19
-0.110
0.015
1.369
1.259
N
12
A
A
CG
ND1
HIS
HIS
13
13
-0.109
0.015
1.369
1.260
N
12
A
A
CG
ND1
HIS
HIS
19
19
-0.110
0.015
1.369
1.259
N
13
A
A
CG
ND1
HIS
HIS
13
13
-0.109
0.015
1.369
1.260
N
13
A
A
CG
ND1
HIS
HIS
19
19
-0.106
0.015
1.369
1.263
N
14
A
A
CG
ND1
HIS
HIS
13
13
-0.107
0.015
1.369
1.262
N
14
A
A
CG
ND1
HIS
HIS
19
19
-0.109
0.015
1.369
1.260
N
15
A
A
CG
ND1
HIS
HIS
13
13
-0.108
0.015
1.369
1.261
N
15
A
A
CG
ND1
HIS
HIS
19
19
-0.107
0.015
1.369
1.262
N
16
A
A
CG
ND1
HIS
HIS
13
13
-0.109
0.015
1.369
1.260
N
16
A
A
CG
ND1
HIS
HIS
19
19
-0.109
0.015
1.369
1.260
N
17
A
A
CG
ND1
HIS
HIS
13
13
-0.111
0.015
1.369
1.258
N
17
A
A
CG
ND1
HIS
HIS
19
19
-0.108
0.015
1.369
1.261
N
18
A
A
CG
ND1
HIS
HIS
13
13
-0.111
0.015
1.369
1.258
N
18
A
A
CG
ND1
HIS
HIS
19
19
-0.110
0.015
1.369
1.259
N
1
A
THR
2
-173.26
143.07
1
A
LEU
5
-142.96
-52.38
1
A
THR
9
-69.01
12.21
1
A
HIS
13
-108.08
-63.71
1
A
ASN
25
-111.15
-166.95
1
A
LYS
33
-172.23
-36.51
1
A
ALA
34
-163.33
43.86
2
A
ASP
4
50.28
-171.93
2
A
LEU
6
53.84
96.46
2
A
ILE
11
45.77
95.90
2
A
ASN
12
-152.33
64.48
2
A
ASN
25
-118.47
-168.52
2
A
LYS
33
-159.70
-32.62
2
A
ALA
34
-167.54
23.34
2
A
VAL
35
-104.45
74.54
2
A
CYS
38
-57.15
-172.14
2
A
ARG
39
-170.71
126.48
3
A
CYS
3
52.27
-110.30
3
A
ASP
4
-60.56
-163.39
3
A
LEU
6
-164.31
-32.68
3
A
ILE
11
-47.95
-12.47
3
A
ASN
25
-114.20
-168.98
3
A
LYS
33
-173.67
-35.26
3
A
ALA
34
-151.26
7.53
4
A
CYS
3
-77.67
30.16
4
A
ASP
4
-173.58
74.29
4
A
LEU
6
-132.91
-83.42
4
A
ASN
12
-170.52
-178.78
4
A
HIS
13
-153.38
-75.81
4
A
ASN
25
-110.21
-166.05
4
A
LYS
33
-170.62
-28.76
4
A
ALA
34
-170.69
25.61
4
A
CYS
38
-68.66
-172.34
4
A
ARG
39
-172.75
112.98
5
A
THR
2
-69.09
-167.23
5
A
ASP
4
51.55
174.35
5
A
LEU
5
-68.16
4.68
5
A
LEU
6
-76.53
23.94
5
A
ILE
11
-50.82
-178.74
5
A
LYS
33
-177.59
-37.29
5
A
ALA
34
-147.62
32.62
5
A
ARG
39
-174.42
132.48
6
A
THR
2
-47.66
155.87
6
A
ASP
4
-171.84
-163.53
6
A
LEU
5
-119.49
73.07
6
A
LEU
6
-96.30
-77.48
6
A
THR
9
-52.22
-74.80
6
A
ASN
12
-170.24
18.83
6
A
HIS
13
64.86
-7.22
6
A
ALA
17
-47.39
-18.40
6
A
ASN
25
-109.40
-165.57
6
A
TYR
29
-171.28
144.78
6
A
LYS
33
-175.51
-53.52
6
A
ARG
39
-173.10
118.56
7
A
THR
2
-39.44
149.35
7
A
ASP
4
172.63
-98.44
7
A
LEU
5
-173.73
-37.64
7
A
HIS
13
-44.19
-19.01
7
A
ASN
25
-115.69
-168.53
7
A
LYS
33
-170.59
-37.41
7
A
ALA
34
-170.85
24.64
8
A
THR
2
48.56
93.91
8
A
LEU
6
49.71
88.99
8
A
THR
9
-158.46
-71.50
8
A
LYS
33
-164.51
-59.44
8
A
ARG
39
-176.03
149.72
9
A
SER
7
179.44
54.56
9
A
ASN
25
-116.49
-168.90
9
A
LYS
33
-175.39
-33.42
9
A
ALA
34
-151.46
32.52
9
A
ARG
39
-173.65
149.00
10
A
CYS
3
-91.76
36.68
10
A
ASP
4
-168.74
115.73
10
A
LEU
6
-148.76
-35.79
10
A
ILE
11
-36.14
103.72
10
A
HIS
13
45.52
-110.80
10
A
LYS
33
-64.33
3.56
10
A
ALA
34
72.40
43.04
10
A
ARG
39
178.47
179.60
11
A
THR
2
68.34
158.72
11
A
CYS
3
-135.14
-33.47
11
A
ASP
4
35.72
-116.61
11
A
LEU
5
46.25
80.54
11
A
LYS
33
-59.50
-1.03
11
A
ALA
34
75.79
36.89
12
A
ASP
4
164.26
-11.21
12
A
LEU
5
-47.33
-77.79
12
A
LEU
6
-147.98
55.28
12
A
THR
9
43.15
21.53
12
A
ALA
34
71.37
41.33
13
A
CYS
3
-53.70
-170.69
13
A
ASP
4
62.64
175.62
13
A
ILE
11
12.71
107.30
13
A
ASN
25
-108.99
-164.07
13
A
CYS
30
-49.22
175.59
13
A
ASN
31
-171.94
146.55
13
A
LYS
33
-165.92
-32.99
13
A
ALA
34
-164.02
22.82
13
A
CYS
38
-56.98
-167.91
13
A
ARG
39
-162.96
111.72
14
A
THR
2
58.45
156.03
14
A
LEU
6
-134.94
-43.09
14
A
THR
9
-52.27
-93.34
14
A
ILE
11
-104.58
68.93
14
A
SER
14
-62.18
-70.95
14
A
ASN
25
-120.26
-168.00
14
A
LYS
33
-162.31
-53.56
15
A
LEU
5
51.00
12.92
15
A
THR
9
-44.68
-75.39
15
A
ASN
12
-103.53
-75.60
15
A
HIS
13
56.00
-74.11
15
A
SER
14
-30.60
-76.33
15
A
ASN
25
-116.15
-166.71
15
A
LYS
33
-65.78
1.07
15
A
ALA
34
70.77
33.44
15
A
CYS
38
-52.28
-171.51
15
A
ARG
39
-172.35
104.54
16
A
THR
2
-48.33
162.66
16
A
ASP
4
-170.58
137.92
16
A
LEU
6
-64.64
3.15
16
A
ILE
11
-76.51
48.54
16
A
HIS
13
53.80
-79.04
16
A
SER
14
-34.74
-30.37
16
A
ALA
15
-49.45
-72.28
17
A
ASP
4
45.05
-126.81
17
A
LEU
5
-164.21
-48.44
17
A
LEU
6
-157.61
41.94
17
A
THR
9
-101.15
-88.34
17
A
HIS
13
175.82
-44.91
17
A
ASN
25
-123.53
-165.80
17
A
LYS
33
-64.73
2.03
17
A
ALA
34
71.51
42.66
17
A
CYS
38
-69.45
-176.42
17
A
ARG
39
-178.08
133.56
18
A
ASP
4
-171.23
-163.21
18
A
THR
9
44.81
73.12
18
A
ASN
25
-115.90
-166.94
18
A
ALA
34
74.40
41.64
SOLUTION STRUCTURE OF SAPECIN
1
N
N
A
HIS
13
A
HIS
13
HELX_P
A
ASN
25
A
ASN
25
1
1
13
disulf
2.020
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
30
A
SG
CYS
30
1_555
disulf
2.020
A
CYS
16
A
SG
CYS
16
1_555
A
CYS
36
A
SG
CYS
36
1_555
disulf
2.019
A
CYS
20
A
SG
CYS
20
1_555
A
CYS
38
A
SG
CYS
38
1_555
ANTIBIOTIC
ANTIBACTERIAL PROTEIN, INSECT DEFENSIN, ANTIBIOTIC
SAPE_SARPE
UNP
1
55
P18313
ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKAVCVCRN
55
94
1L4V
1
40
P18313
A
1
1
40
2
anti-parallel
A
GLY
27
A
GLY
27
A
ASN
31
A
ASN
31
A
VAL
35
A
VAL
35
A
ARG
39
A
ARG
39
1
P 1