1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Campos-Olivas, R. Louis, J.M. Clerot, D. Gronenborn, B. Gronenborn, A.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 99 10310 10315 10.1073/pnas.152342699 12130667 The structure of a replication initiator unites diverse aspects of nucleic acid metabolism 2002 10.2210/pdb1l5i/pdb pdb_00001l5i 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13583.302 Rep protein N-terminal domain (residues 4-121), DNA-binding domain 1 man polymer no no SGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTR SAHFHPNIQGAKSSSDVKSYIDKDGDVLEWGTFQIDGR SGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTR SAHFHPNIQGAKSSSDVKSYIDKDGDVLEWGTFQIDGR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Begomovirus Escherichia sample Rep 123735 Tomato yellow leaf curl Sardinia virus 562 Escherichia coli plasmid database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-09-18 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name 1H, 13C, AND 15N NMR ASSIGNMENTS. COUPLING CONSTANTS HNHA. MINIMIZED AVERAGE STRUCTURE RCSB Y RCSB 2002-03-07 REL REL THIS ENTRY CONTAINS THE 30-CONFORMER ENSEMBLE. THE MINIMIZED AVERAGE STRUCTURE OF THIS ENSEMBLE HAS BEEN DEPOSITED UNDER CODE 1L2M, AND IT IS A GOOD REPRESENTATION OF THE 30-CONFORMER ENSEMBLE CONTAINED HERE. 30 2D NOESY 3D_15N-SEPARATED_NOESY HNHA HNHB 4D_13C/15N-SEPARATED_NOESY 2D HNCOCG AROM 2D HNCO AROM 4D 13C,13C NOESY 0.3M 6.6 AMBIENT 298 K TORSION ANGLE SIMULATED ANHEALING 0.8-1.0MM [10%-13C;U-99% 15N] REP4-121, SODIUM PHOSPHATE 20MM, NACL 100MM, DTT 1MM 0.8-1.0MM [U-13C;U-99% 15N] REP4-121, SODIUM PHOSPHATE 20MM, NACL 100MM, DTT 1MM 0.8-1.0MM [10%-13C;U-99% 15N] REP4-121, SODIUM PHOSPHATE 20MM, NACL 100MM, DTT 1MM 0.8-1.0MM [U-13C;U-99 15N] REP4-121, SODIUM PHOSPHATE 20MM, NACL 100MM, DTT 1MM processing NMRPipe data analysis NMRView 4.1.1 data analysis TALOS structure solution DYANA refinement DYANA 500 Bruker DMX 600 Bruker DMX 750 Bruker DMX 800 Bruker DRX SER 4 n 1 SER 4 A GLY 5 n 2 GLY 5 A ARG 6 n 3 ARG 6 A PHE 7 n 4 PHE 7 A SER 8 n 5 SER 8 A ILE 9 n 6 ILE 9 A LYS 10 n 7 LYS 10 A ALA 11 n 8 ALA 11 A LYS 12 n 9 LYS 12 A ASN 13 n 10 ASN 13 A TYR 14 n 11 TYR 14 A PHE 15 n 12 PHE 15 A LEU 16 n 13 LEU 16 A THR 17 n 14 THR 17 A TYR 18 n 15 TYR 18 A PRO 19 n 16 PRO 19 A LYS 20 n 17 LYS 20 A CYS 21 n 18 CYS 21 A ASP 22 n 19 ASP 22 A LEU 23 n 20 LEU 23 A THR 24 n 21 THR 24 A LYS 25 n 22 LYS 25 A GLU 26 n 23 GLU 26 A ASN 27 n 24 ASN 27 A ALA 28 n 25 ALA 28 A LEU 29 n 26 LEU 29 A SER 30 n 27 SER 30 A GLN 31 n 28 GLN 31 A ILE 32 n 29 ILE 32 A THR 33 n 30 THR 33 A ASN 34 n 31 ASN 34 A LEU 35 n 32 LEU 35 A GLN 36 n 33 GLN 36 A THR 37 n 34 THR 37 A PRO 38 n 35 PRO 38 A THR 39 n 36 THR 39 A ASN 40 n 37 ASN 40 A LYS 41 n 38 LYS 41 A LEU 42 n 39 LEU 42 A PHE 43 n 40 PHE 43 A ILE 44 n 41 ILE 44 A LYS 45 n 42 LYS 45 A ILE 46 n 43 ILE 46 A CYS 47 n 44 CYS 47 A ARG 48 n 45 ARG 48 A GLU 49 n 46 GLU 49 A LEU 50 n 47 LEU 50 A HIS 51 n 48 HIS 51 A GLU 52 n 49 GLU 52 A ASN 53 n 50 ASN 53 A GLY 54 n 51 GLY 54 A GLU 55 n 52 GLU 55 A PRO 56 n 53 PRO 56 A HIS 57 n 54 HIS 57 A LEU 58 n 55 LEU 58 A HIS 59 n 56 HIS 59 A ILE 60 n 57 ILE 60 A LEU 61 n 58 LEU 61 A ILE 62 n 59 ILE 62 A GLN 63 n 60 GLN 63 A PHE 64 n 61 PHE 64 A GLU 65 n 62 GLU 65 A GLY 66 n 63 GLY 66 A LYS 67 n 64 LYS 67 A TYR 68 n 65 TYR 68 A ASN 69 n 66 ASN 69 A CYS 70 n 67 CYS 70 A THR 71 n 68 THR 71 A ASN 72 n 69 ASN 72 A GLN 73 n 70 GLN 73 A ARG 74 n 71 ARG 74 A PHE 75 n 72 PHE 75 A PHE 76 n 73 PHE 76 A ASP 77 n 74 ASP 77 A LEU 78 n 75 LEU 78 A VAL 79 n 76 VAL 79 A SER 80 n 77 SER 80 A PRO 81 n 78 PRO 81 A THR 82 n 79 THR 82 A ARG 83 n 80 ARG 83 A SER 84 n 81 SER 84 A ALA 85 n 82 ALA 85 A HIS 86 n 83 HIS 86 A PHE 87 n 84 PHE 87 A HIS 88 n 85 HIS 88 A PRO 89 n 86 PRO 89 A ASN 90 n 87 ASN 90 A ILE 91 n 88 ILE 91 A GLN 92 n 89 GLN 92 A GLY 93 n 90 GLY 93 A ALA 94 n 91 ALA 94 A LYS 95 n 92 LYS 95 A SER 96 n 93 SER 96 A SER 97 n 94 SER 97 A SER 98 n 95 SER 98 A ASP 99 n 96 ASP 99 A VAL 100 n 97 VAL 100 A LYS 101 n 98 LYS 101 A SER 102 n 99 SER 102 A TYR 103 n 100 TYR 103 A ILE 104 n 101 ILE 104 A ASP 105 n 102 ASP 105 A LYS 106 n 103 LYS 106 A ASP 107 n 104 ASP 107 A GLY 108 n 105 GLY 108 A ASP 109 n 106 ASP 109 A VAL 110 n 107 VAL 110 A LEU 111 n 108 LEU 111 A GLU 112 n 109 GLU 112 A TRP 113 n 110 TRP 113 A GLY 114 n 111 GLY 114 A THR 115 n 112 THR 115 A PHE 116 n 113 PHE 116 A GLN 117 n 114 GLN 117 A ILE 118 n 115 ILE 118 A ASP 119 n 116 ASP 119 A GLY 120 n 117 GLY 120 A ARG 121 n 118 ARG 121 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLN 92 A O GLN 89 A N PHE 15 A N PHE 12 A N ALA 11 A N ALA 8 A O TYR 68 A O TYR 65 A O LEU 61 A O LEU 58 A N LYS 45 A N LYS 42 A N ILE 44 A N ILE 41 A O TRP 113 A O TRP 110 A N LEU 78 A N LEU 75 A O PHE 87 A O PHE 84 12 A A HZ1 OD2 LYS ASP 12 119 1.60 14 A A O H LYS LEU 25 29 1.58 22 A A O HG1 LEU THR 29 33 1.52 1 A LYS 20 39.21 48.39 1 A THR 39 -113.20 -107.26 1 A LEU 42 -98.95 -86.00 1 A CYS 70 -100.62 67.04 1 A THR 71 -95.70 30.72 1 A ASN 72 -160.97 119.30 1 A GLN 73 -89.48 38.08 1 A SER 97 -128.30 -65.03 1 A ASP 109 50.81 70.10 2 A LYS 20 38.45 42.12 2 A THR 39 -96.73 -100.71 2 A ASN 40 -174.38 140.90 2 A LEU 42 -97.19 -85.57 2 A CYS 70 -116.23 69.84 2 A GLN 73 -86.85 43.90 2 A LYS 95 -61.02 -149.05 2 A SER 97 155.26 145.83 3 A LYS 20 39.17 50.26 3 A THR 39 -98.17 -101.66 3 A ASN 40 -171.26 135.39 3 A LEU 42 -94.90 -86.05 3 A CYS 70 -115.73 70.26 3 A THR 71 -94.43 31.56 3 A GLN 73 -88.81 33.99 3 A LYS 95 -60.35 -155.92 3 A SER 97 155.38 142.57 4 A LYS 20 39.96 53.10 4 A THR 39 -116.26 -108.02 4 A ASN 40 -173.16 140.46 4 A CYS 70 -112.39 70.69 4 A THR 71 -95.27 31.07 4 A ASN 72 -168.54 114.06 4 A LYS 95 -66.59 -124.65 4 A SER 97 156.53 133.63 5 A LYS 20 39.71 52.31 5 A THR 39 -113.90 -107.20 5 A LEU 42 -96.80 -87.92 5 A CYS 70 -103.89 70.62 5 A THR 71 -98.67 32.40 5 A GLN 73 -87.64 42.22 5 A LYS 95 -69.67 -133.91 5 A SER 97 154.97 133.59 5 A ASP 109 79.66 54.92 6 A LYS 20 39.89 47.05 6 A THR 39 -113.47 -106.95 6 A ASN 40 -171.03 143.33 6 A CYS 70 -105.79 70.51 6 A GLN 73 -87.16 42.65 6 A LYS 95 -63.77 -138.22 6 A SER 97 156.99 132.45 7 A LYS 20 38.03 51.52 7 A THR 39 -110.62 -107.38 7 A LEU 42 -94.44 -84.78 7 A CYS 70 -105.79 68.41 7 A THR 71 -96.87 31.55 7 A GLN 73 -89.83 38.08 7 A LYS 95 -65.17 -149.39 7 A SER 97 153.86 147.18 8 A LYS 20 39.54 47.34 8 A THR 39 -117.94 -108.20 8 A ASN 40 -172.32 143.65 8 A CYS 70 -105.49 69.90 8 A THR 71 -98.84 33.20 8 A ASN 72 -170.59 113.31 8 A LYS 95 -63.23 -144.25 8 A SER 97 155.93 138.19 9 A LYS 20 39.15 44.45 9 A THR 39 -116.43 -107.61 9 A CYS 70 -102.74 70.39 9 A THR 71 -94.95 30.62 9 A ASN 72 -161.94 117.88 9 A GLN 73 -86.74 43.62 9 A LYS 95 -60.58 -150.72 9 A SER 97 155.41 142.17 10 A LYS 20 39.79 48.14 10 A THR 39 -114.13 -107.35 10 A LEU 42 -103.54 -86.81 10 A THR 71 -96.89 31.79 10 A ASN 72 -161.39 117.37 10 A GLN 73 -87.77 37.35 10 A ASP 109 66.30 67.55 11 A THR 39 -114.12 -107.84 11 A LEU 42 -96.09 -85.80 11 A LYS 67 -58.33 109.15 11 A CYS 70 -107.73 70.40 11 A GLN 73 -86.99 44.01 11 A LYS 95 -61.94 -141.96 11 A SER 97 155.98 139.30 12 A LYS 20 39.20 47.30 12 A THR 39 -111.25 -108.72 12 A CYS 70 -113.14 69.98 12 A GLN 73 -86.55 44.02 12 A LYS 95 -61.87 -143.85 12 A SER 97 156.10 136.27 13 A LYS 20 39.48 52.98 13 A THR 39 -98.47 -101.84 13 A ASN 40 -171.45 143.03 13 A LEU 42 -103.87 -85.73 13 A CYS 70 -112.91 70.08 13 A THR 71 -94.70 31.71 13 A GLN 73 -91.48 36.83 13 A LYS 95 -69.68 -140.25 13 A SER 97 155.23 138.14 13 A ASP 109 77.49 62.91 14 A LYS 20 39.73 48.62 14 A THR 39 -116.64 -107.90 14 A LEU 42 -130.77 -85.46 14 A CYS 70 -101.68 68.81 14 A THR 71 -94.87 30.52 14 A ASN 72 -163.49 116.12 14 A GLN 73 -84.67 44.85 14 A SER 97 -121.98 -58.94 14 A ASP 109 59.65 76.11 15 A LYS 20 37.35 52.16 15 A THR 39 -118.05 -107.76 15 A CYS 70 -119.36 69.36 15 A THR 71 -93.93 30.77 15 A GLN 73 -88.59 31.94 15 A LYS 95 -66.23 -138.83 15 A SER 97 155.78 134.96 16 A LYS 20 38.32 46.15 16 A THR 39 -113.49 -108.74 16 A ASN 40 -170.07 133.66 16 A LEU 42 -103.27 -87.26 16 A CYS 70 -111.53 70.44 16 A THR 71 -94.26 30.20 16 A ASN 72 -163.02 117.32 16 A GLN 73 -87.05 44.26 16 A LYS 95 -87.83 44.07 16 A SER 97 -107.99 -97.50 17 A LYS 20 39.62 51.46 17 A THR 39 -111.37 -108.57 17 A LEU 42 -104.63 -84.46 17 A CYS 70 -108.20 70.29 17 A THR 71 -96.72 32.19 17 A ASN 72 -168.38 113.47 17 A LYS 95 -62.01 -152.34 17 A SER 97 155.05 143.66 18 A LYS 20 37.77 49.87 18 A THR 39 -115.66 -107.18 18 A LEU 42 -96.38 -86.34 18 A CYS 70 -104.98 70.28 18 A THR 71 -93.90 30.38 18 A ASN 72 -164.29 118.61 18 A GLN 73 -84.58 46.28 18 A LYS 95 -67.46 -125.90 18 A SER 97 156.07 132.61 19 A LYS 20 39.77 56.33 19 A THR 39 -115.86 -107.93 19 A LEU 42 -103.40 -83.93 19 A CYS 70 -103.86 69.16 19 A THR 71 -95.04 30.84 19 A GLN 73 -87.54 41.75 19 A LYS 95 -68.76 -145.03 19 A SER 97 155.30 140.26 20 A LYS 20 39.25 36.45 20 A THR 39 -113.45 -105.73 20 A ASN 40 -172.43 141.07 20 A CYS 70 -114.76 70.03 20 A ASN 72 -161.04 119.73 20 A GLN 73 -86.59 42.03 20 A LYS 95 -62.77 -150.62 20 A SER 97 155.12 139.48 21 A THR 39 -101.59 -93.46 21 A ASN 40 178.10 140.62 21 A LEU 42 -96.15 -86.52 21 A LYS 67 -59.61 109.59 21 A CYS 70 -105.68 71.69 21 A THR 71 -95.93 31.67 21 A ASP 109 67.57 70.76 22 A LYS 20 39.89 46.07 22 A THR 39 -100.37 -99.15 22 A ASN 40 -175.20 144.64 22 A CYS 70 -106.17 69.69 22 A THR 71 -94.03 30.65 22 A ASN 72 -163.91 115.80 22 A GLN 73 -80.94 48.76 22 A LYS 95 -59.78 -111.47 22 A SER 97 158.40 142.89 23 A LYS 20 39.24 45.32 23 A THR 39 -113.95 -107.04 23 A ASN 40 -170.85 142.57 23 A CYS 70 -111.30 70.49 23 A ASN 72 -168.95 109.15 23 A LYS 95 -61.49 -138.26 23 A SER 97 156.66 136.12 24 A LYS 20 37.84 37.28 24 A THR 39 -116.54 -107.52 24 A ASN 40 -170.87 141.61 24 A CYS 70 -102.99 68.62 24 A THR 71 -95.49 31.11 24 A ASN 72 -162.58 117.44 24 A GLN 73 -86.53 43.22 24 A SER 97 -125.96 -65.50 24 A ASP 109 74.36 68.70 25 A LYS 20 37.72 41.44 25 A THR 39 -113.67 -107.29 25 A ASN 40 -171.94 134.80 25 A LEU 42 -103.41 -86.56 25 A CYS 70 -111.27 69.72 25 A GLN 73 -88.57 35.88 25 A SER 97 -128.33 -50.42 25 A LYS 106 -75.60 35.81 25 A ASP 109 79.16 55.39 26 A LYS 20 39.38 46.33 26 A THR 39 -98.65 -93.54 26 A ASN 40 178.26 146.20 26 A CYS 70 -115.26 67.37 26 A ASN 72 -163.99 117.71 26 A GLN 73 -86.28 41.25 26 A LYS 95 -62.41 -152.26 26 A SER 97 155.13 139.98 26 A ASP 119 68.79 156.68 27 A LYS 20 38.11 42.45 27 A THR 39 -93.09 -102.25 27 A ASN 40 -173.38 138.24 27 A LEU 42 -132.11 -87.58 27 A CYS 70 -107.28 69.12 27 A THR 71 -94.88 31.10 27 A ASN 72 -164.50 116.14 27 A GLN 73 -82.21 46.14 28 A LYS 20 39.47 53.61 28 A THR 39 -115.26 -105.73 28 A ASN 40 -170.60 136.14 28 A LEU 42 -96.61 -82.92 28 A CYS 70 -106.75 69.86 28 A THR 71 -96.26 31.57 28 A GLN 73 -88.16 36.75 28 A LYS 95 -65.42 -138.72 28 A SER 97 154.47 139.75 28 A ASP 119 69.85 -67.96 29 A LYS 20 39.63 58.19 29 A THR 39 -111.93 -107.75 29 A ASN 40 -170.69 143.92 29 A LEU 42 -91.25 -63.11 29 A CYS 70 -111.98 69.68 29 A ASN 72 -164.60 115.92 29 A GLN 73 -82.03 48.01 29 A SER 97 -127.46 -55.96 29 A ASP 109 72.60 74.08 30 A LYS 20 39.06 35.69 30 A THR 39 -111.63 -107.48 30 A ASN 40 -171.62 129.15 30 A LEU 42 -94.47 -88.77 30 A LYS 67 -58.65 106.12 30 A GLN 73 -89.26 31.96 30 A LYS 95 -60.65 -151.06 30 A SER 97 156.47 140.12 30-CONFORMER NMR ENSEMBLE OF THE N-TERMINAL, DNA-BINDING DOMAIN OF THE REPLICATION INITIATION PROTEIN FROM A GEMINIVIRUS (TOMATO YELLOW LEAF CURL VIRUS-SARDINIA) 1 N N A THR 24 A THR 21 HELX_P A LEU 35 A LEU 32 1 1 12 A SER 98 A SER 95 HELX_P A LYS 106 A LYS 103 1 2 9 VIRAL PROTEIN A+B FOLD, RBD-LIKE FOLD, Viral protein VAL1_TYLCS UNP 1 4 P27260 SGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTR SAHFHPNIQGAKSSSDVKSYIDKDGDVLEWGTFQIDGR 4 121 1L5I 4 121 P27260 A 1 1 118 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASN 90 A ASN 87 A GLY 93 A GLY 90 A LYS 10 A LYS 7 A TYR 18 A TYR 15 A PRO 56 A PRO 53 A ASN 69 A ASN 66 A LYS 41 A LYS 38 A LEU 50 A LEU 47 A VAL 110 A VAL 107 A GLY 114 A GLY 111 A LEU 78 A LEU 75 A VAL 79 A VAL 76 A HIS 86 A HIS 83 A PHE 87 A PHE 84 1 P 1