0.013914 -0.000000 0.000000 0.000000 0.011084 0.000000 0.000000 0.000000 0.021048 0.00000 0.00000 0.00000 Cheong, C.-G. Escalante-Semerena, J. Rayment, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 71.870 90.220 47.510 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C3 H5 N2 1 69.085 IMIDAZOLE non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H Y 183 N N Y 184 N C Y 185 N N Y 186 N C Y 187 N C N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N C N 223 N N N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N S N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N P N 284 N O N 285 N O N 286 N O N 287 N O N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N C N 294 N C N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N O N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 R C N 324 N O N 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N N Y 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N C N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C N 374 N O N 375 N O N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N N N 388 S C N 389 N C N 390 N O N 391 N C N 392 N C N 393 N C N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing Y 173 N sing Y 174 N sing N 175 N sing Y 176 N doub N 177 N sing Y 178 N sing N 179 N sing Y 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing Y 258 N doub Y 259 N sing Y 260 N sing N 261 N sing Y 262 N doub N 263 N sing Y 264 N doub N 265 N sing Y 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing Y 331 N doub Y 332 N sing Y 333 N sing N 334 N sing Y 335 N doub Y 336 N sing Y 337 N sing N 338 N sing Y 339 N sing Y 340 N doub N 341 N sing Y 342 N doub N 343 N sing Y 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing Y 359 N doub Y 360 N sing Y 361 N sing N 362 N sing Y 363 N doub N 364 N sing Y 365 N doub N 366 N sing Y 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N doub N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing US Biochemistry BICHAW 0033 0006-2960 41 9079 9089 10.1021/bi020294w 12119022 Structural studies of the L-threonine-O-3-phosphate decarboxylase (CobD) enzyme from Salmonella enterica: the apo, substrate, and product-aldimine complexes. 2002 10.2210/pdb1l5n/pdb pdb_00001l5n 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 278 1 double focusing mirror AREA DETECTOR SIEMENS HI-STAR SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 36675.594 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 1 man polymer 94.971 PHOSPHATE ION 1 syn non-polymer 69.085 IMIDAZOLE 1 syn non-polymer 18.015 water 107 nat water CobT; NN:DBI PRT; N1-alpha-phosphoribosyltransferase; Nicotinate Mononucleotide:5,6-Dimethylbenzimidazole Phosphoribosyltransferase E.C.2.4.2.21 no no MQTLHALLRDIPAPDAEAMARTQQHIDGLLKPPGSLGRLETLAVQLAGMPGLNGTPQVGEKAVLVMCADHGVWDEGVAVS PKIVTAIQAANMTRGTTGVCVLAAQAGAKVHVIDVGIDAEPIPGVVNMRVARGCGNIAVGPAMSRLQAEALLLEVSRYTC DLAQRGVTLFGVGELGMANTTPAAAMVSVFTGSDAKEVVGIGANLPPSRIDNKVDVVRRAIAINQPNPRDGIDVLSKVGG FDLVGMTGVMLGAARCGLPVLLDGFLSYSAALAACQIAPAVRPYLIPSHFSAEKGARIALAHLSMEPYLHMAMRLGEGSG AALAMPIVEAACAMFHNMGELAASNIVLPEGNANAT MQTLHALLRDIPAPDAEAMARTQQHIDGLLKPPGSLGRLETLAVQLAGMPGLNGTPQVGEKAVLVMCADHGVWDEGVAVS PKIVTAIQAANMTRGTTGVCVLAAQAGAKVHVIDVGIDAEPIPGVVNMRVARGCGNIAVGPAMSRLQAEALLLEVSRYTC DLAQRGVTLFGVGELGMANTTPAAAMVSVFTGSDAKEVVGIGANLPPSRIDNKVDVVRRAIAINQPNPRDGIDVLSKVGG FDLVGMTGVMLGAARCGLPVLLDGFLSYSAALAACQIAPAVRPYLIPSHFSAEKGARIALAHLSMEPYLHMAMRLGEGSG AALAMPIVEAACAMFHNMGELAASNIVLPEGNANAT A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Salmonella Salmonella sample cobt 28901 Salmonella enterica 28901 Salmonella enterica JE2461 plasmid pT7-5 1 2.10 41.39 VAPOR DIFFUSION, HANGING DROP 6.0 ammonium phosphate, pH 6.0, VAPOR DIFFUSION, HANGING DROP at 298K 298 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_sheet struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2002-09-07 1 1 2008-04-28 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_sheet.number_strands _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CobT complexed with 5,6-dimethylbenzimidazole RCSB Y RCSB 2002-03-07 REL REL PO4 PHOSPHATE ION IMD IMIDAZOLE HOH water 1D0S PDB entry 1D0S PDB experimental model PI 991 2 PO4 PO4 991 A IMD 990 3 IMD IMD 990 A HOH 1001 4 HOH HOH 1001 A HOH 1002 4 HOH HOH 1002 A HOH 1003 4 HOH HOH 1003 A HOH 1004 4 HOH HOH 1004 A HOH 1005 4 HOH HOH 1005 A HOH 1006 4 HOH HOH 1006 A HOH 1007 4 HOH HOH 1007 A HOH 1008 4 HOH HOH 1008 A HOH 1009 4 HOH HOH 1009 A HOH 1010 4 HOH HOH 1010 A HOH 1011 4 HOH HOH 1011 A HOH 1012 4 HOH HOH 1012 A HOH 1013 4 HOH HOH 1013 A HOH 1014 4 HOH HOH 1014 A HOH 1015 4 HOH HOH 1015 A HOH 1016 4 HOH HOH 1016 A HOH 1017 4 HOH HOH 1017 A HOH 1018 4 HOH HOH 1018 A HOH 1019 4 HOH HOH 1019 A HOH 1020 4 HOH HOH 1020 A HOH 1021 4 HOH HOH 1021 A HOH 1022 4 HOH HOH 1022 A HOH 1023 4 HOH HOH 1023 A HOH 1024 4 HOH HOH 1024 A HOH 1025 4 HOH HOH 1025 A HOH 1026 4 HOH HOH 1026 A HOH 1027 4 HOH HOH 1027 A HOH 1028 4 HOH HOH 1028 A HOH 1029 4 HOH HOH 1029 A HOH 1030 4 HOH HOH 1030 A HOH 1031 4 HOH HOH 1031 A HOH 1032 4 HOH HOH 1032 A HOH 1033 4 HOH HOH 1033 A HOH 1034 4 HOH HOH 1034 A HOH 1035 4 HOH HOH 1035 A HOH 1036 4 HOH HOH 1036 A HOH 1037 4 HOH HOH 1037 A HOH 1038 4 HOH HOH 1038 A HOH 1039 4 HOH HOH 1039 A HOH 1040 4 HOH HOH 1040 A HOH 1041 4 HOH HOH 1041 A HOH 1042 4 HOH HOH 1042 A HOH 1044 4 HOH HOH 1044 A HOH 1045 4 HOH HOH 1045 A HOH 1046 4 HOH HOH 1046 A HOH 1048 4 HOH HOH 1048 A HOH 1049 4 HOH HOH 1049 A HOH 1050 4 HOH HOH 1050 A HOH 1051 4 HOH HOH 1051 A HOH 1055 4 HOH HOH 1055 A HOH 1056 4 HOH HOH 1056 A HOH 1057 4 HOH HOH 1057 A HOH 1059 4 HOH HOH 1059 A HOH 1060 4 HOH HOH 1060 A HOH 1061 4 HOH HOH 1061 A HOH 1062 4 HOH HOH 1062 A HOH 1064 4 HOH HOH 1064 A HOH 1065 4 HOH HOH 1065 A HOH 1066 4 HOH HOH 1066 A HOH 1067 4 HOH HOH 1067 A HOH 1068 4 HOH HOH 1068 A HOH 1069 4 HOH HOH 1069 A HOH 1070 4 HOH HOH 1070 A HOH 1071 4 HOH HOH 1071 A HOH 1072 4 HOH HOH 1072 A HOH 1073 4 HOH HOH 1073 A HOH 1074 4 HOH HOH 1074 A HOH 1075 4 HOH HOH 1075 A HOH 1076 4 HOH HOH 1076 A HOH 1077 4 HOH HOH 1077 A HOH 1078 4 HOH HOH 1078 A HOH 1079 4 HOH HOH 1079 A HOH 1080 4 HOH HOH 1080 A HOH 1081 4 HOH HOH 1081 A HOH 1082 4 HOH HOH 1082 A HOH 1084 4 HOH HOH 1084 A HOH 1086 4 HOH HOH 1086 A HOH 1089 4 HOH HOH 1089 A HOH 1091 4 HOH HOH 1091 A HOH 1092 4 HOH HOH 1092 A HOH 1093 4 HOH HOH 1093 A HOH 1094 4 HOH HOH 1094 A HOH 1097 4 HOH HOH 1097 A HOH 1098 4 HOH HOH 1098 A HOH 1099 4 HOH HOH 1099 A HOH 1100 4 HOH HOH 1100 A HOH 1101 4 HOH HOH 1101 A HOH 1102 4 HOH HOH 1102 A HOH 1103 4 HOH HOH 1103 A HOH 1104 4 HOH HOH 1104 A HOH 1105 4 HOH HOH 1105 A HOH 1107 4 HOH HOH 1107 A HOH 1109 4 HOH HOH 1109 A HOH 1113 4 HOH HOH 1113 A HOH 1116 4 HOH HOH 1116 A HOH 1120 4 HOH HOH 1120 A HOH 1121 4 HOH HOH 1121 A HOH 1124 4 HOH HOH 1124 A HOH 1125 4 HOH HOH 1125 A HOH 1126 4 HOH HOH 1126 A HOH 1131 4 HOH HOH 1131 A HOH 1133 4 HOH HOH 1133 A HOH 1140 4 HOH HOH 1140 A HOH 1200 4 HOH HOH 1200 A HOH 1201 4 HOH HOH 1201 A HOH 1202 4 HOH HOH 1202 A HOH 1203 4 HOH HOH 1203 A n 1 1 A n 2 2 A n 3 3 A LEU 4 n 4 LEU 4 A ALA 5 n 5 HIS 5 A ALA 6 n 6 ALA 6 A LEU 7 n 7 LEU 7 A LEU 8 n 8 LEU 8 A ARG 9 n 9 ARG 9 A ASP 10 n 10 ASP 10 A ILE 11 n 11 ILE 11 A PRO 12 n 12 PRO 12 A ALA 13 n 13 ALA 13 A PRO 14 n 14 PRO 14 A ASP 15 n 15 ASP 15 A ALA 16 n 16 ALA 16 A GLU 17 n 17 GLU 17 A ALA 18 n 18 ALA 18 A MET 19 n 19 MET 19 A ALA 20 n 20 ALA 20 A ARG 21 n 21 ARG 21 A THR 22 n 22 THR 22 A GLN 23 n 23 GLN 23 A ALA 24 n 24 GLN 24 A HIS 25 n 25 HIS 25 A ILE 26 n 26 ILE 26 A ASP 27 n 27 ASP 27 A GLY 28 n 28 GLY 28 A LEU 29 n 29 LEU 29 A LEU 30 n 30 LEU 30 A LYS 31 n 31 LYS 31 A PRO 32 n 32 PRO 32 A PRO 33 n 33 PRO 33 A GLY 34 n 34 GLY 34 A SER 35 n 35 SER 35 A LEU 36 n 36 LEU 36 A GLY 37 n 37 GLY 37 A ARG 38 n 38 ARG 38 A LEU 39 n 39 LEU 39 A GLU 40 n 40 GLU 40 A THR 41 n 41 THR 41 A LEU 42 n 42 LEU 42 A ALA 43 n 43 ALA 43 A VAL 44 n 44 VAL 44 A GLN 45 n 45 GLN 45 A LEU 46 n 46 LEU 46 A ALA 47 n 47 ALA 47 A GLY 48 n 48 GLY 48 A MET 49 n 49 MET 49 A PRO 50 n 50 PRO 50 A GLY 51 n 51 GLY 51 A LEU 52 n 52 LEU 52 A ASN 53 n 53 ASN 53 A GLY 54 n 54 GLY 54 A THR 55 n 55 THR 55 A PRO 56 n 56 PRO 56 A GLN 57 n 57 GLN 57 A VAL 58 n 58 VAL 58 A GLY 59 n 59 GLY 59 A GLU 60 n 60 GLU 60 A LYS 61 n 61 LYS 61 A ALA 62 n 62 ALA 62 A VAL 63 n 63 VAL 63 A LEU 64 n 64 LEU 64 A VAL 65 n 65 VAL 65 A MET 66 n 66 MET 66 A CYS 67 n 67 CYS 67 A ALA 68 n 68 ALA 68 A ASP 69 n 69 ASP 69 A HIS 70 n 70 HIS 70 A GLY 71 n 71 GLY 71 A VAL 72 n 72 VAL 72 A TRP 73 n 73 TRP 73 A ASP 74 n 74 ASP 74 A GLU 75 n 75 GLU 75 A GLY 76 n 76 GLY 76 A VAL 77 n 77 VAL 77 A ALA 78 n 78 ALA 78 A VAL 79 n 79 VAL 79 A SER 80 n 80 SER 80 A PRO 81 n 81 PRO 81 A LYS 82 n 82 LYS 82 A ILE 83 n 83 ILE 83 A VAL 84 n 84 VAL 84 A THR 85 n 85 THR 85 A ALA 86 n 86 ALA 86 A ILE 87 n 87 ILE 87 A GLN 88 n 88 GLN 88 A ALA 89 n 89 ALA 89 A ALA 90 n 90 ALA 90 A ASN 91 n 91 ASN 91 A MET 92 n 92 MET 92 A THR 93 n 93 THR 93 A ARG 94 n 94 ARG 94 A GLY 95 n 95 GLY 95 A THR 96 n 96 THR 96 A THR 97 n 97 THR 97 A GLY 98 n 98 GLY 98 A VAL 99 n 99 VAL 99 A CYS 100 n 100 CYS 100 A VAL 101 n 101 VAL 101 A LEU 102 n 102 LEU 102 A ALA 103 n 103 ALA 103 A ALA 104 n 104 ALA 104 A GLN 105 n 105 GLN 105 A ALA 106 n 106 ALA 106 A GLY 107 n 107 GLY 107 A ALA 108 n 108 ALA 108 A ALA 109 n 109 LYS 109 A VAL 110 n 110 VAL 110 A HIS 111 n 111 HIS 111 A VAL 112 n 112 VAL 112 A ILE 113 n 113 ILE 113 A ASP 114 n 114 ASP 114 A VAL 115 n 115 VAL 115 A GLY 116 n 116 GLY 116 A ILE 117 n 117 ILE 117 A ASP 118 n 118 ASP 118 A ALA 119 n 119 ALA 119 A GLU 120 n 120 GLU 120 A PRO 121 n 121 PRO 121 A ILE 122 n 122 ILE 122 A PRO 123 n 123 PRO 123 A GLY 124 n 124 GLY 124 A VAL 125 n 125 VAL 125 A VAL 126 n 126 VAL 126 A ASN 127 n 127 ASN 127 A MET 128 n 128 MET 128 A ARG 129 n 129 ARG 129 A VAL 130 n 130 VAL 130 A ALA 131 n 131 ALA 131 A ARG 132 n 132 ARG 132 A GLY 133 n 133 GLY 133 A CYS 134 n 134 CYS 134 A GLY 135 n 135 GLY 135 A ASN 136 n 136 ASN 136 A ILE 137 n 137 ILE 137 A ALA 138 n 138 ALA 138 A VAL 139 n 139 VAL 139 A GLY 140 n 140 GLY 140 A PRO 141 n 141 PRO 141 A ALA 142 n 142 ALA 142 A MET 143 n 143 MET 143 A SER 144 n 144 SER 144 A ARG 145 n 145 ARG 145 A LEU 146 n 146 LEU 146 A GLN 147 n 147 GLN 147 A ALA 148 n 148 ALA 148 A GLU 149 n 149 GLU 149 A ALA 150 n 150 ALA 150 A LEU 151 n 151 LEU 151 A LEU 152 n 152 LEU 152 A LEU 153 n 153 LEU 153 A GLU 154 n 154 GLU 154 A VAL 155 n 155 VAL 155 A SER 156 n 156 SER 156 A ALA 157 n 157 ARG 157 A TYR 158 n 158 TYR 158 A THR 159 n 159 THR 159 A CYS 160 n 160 CYS 160 A ALA 161 n 161 ASP 161 A LEU 162 n 162 LEU 162 A ALA 163 n 163 ALA 163 A GLN 164 n 164 GLN 164 A ALA 165 n 165 ARG 165 A GLY 166 n 166 GLY 166 A VAL 167 n 167 VAL 167 A THR 168 n 168 THR 168 A LEU 169 n 169 LEU 169 A PHE 170 n 170 PHE 170 A GLY 171 n 171 GLY 171 A VAL 172 n 172 VAL 172 A GLY 173 n 173 GLY 173 A GLU 174 n 174 GLU 174 A LEU 175 n 175 LEU 175 A GLY 176 n 176 GLY 176 A MET 177 n 177 MET 177 A ALA 178 n 178 ALA 178 A ASN 179 n 179 ASN 179 A THR 180 n 180 THR 180 A THR 181 n 181 THR 181 A PRO 182 n 182 PRO 182 A ALA 183 n 183 ALA 183 A ALA 184 n 184 ALA 184 A ALA 185 n 185 ALA 185 A MET 186 n 186 MET 186 A VAL 187 n 187 VAL 187 A SER 188 n 188 SER 188 A VAL 189 n 189 VAL 189 A PHE 190 n 190 PHE 190 A THR 191 n 191 THR 191 A GLY 192 n 192 GLY 192 A SER 193 n 193 SER 193 A ASP 194 n 194 ASP 194 A ALA 195 n 195 ALA 195 A ALA 196 n 196 LYS 196 A ALA 197 n 197 GLU 197 A VAL 198 n 198 VAL 198 A VAL 199 n 199 VAL 199 A GLY 200 n 200 GLY 200 A ILE 201 n 201 ILE 201 A GLY 202 n 202 GLY 202 A ALA 203 n 203 ALA 203 A ASN 204 n 204 ASN 204 A LEU 205 n 205 LEU 205 A PRO 206 n 206 PRO 206 A ALA 207 n 207 PRO 207 A SER 208 n 208 SER 208 A ALA 209 n 209 ARG 209 A ILE 210 n 210 ILE 210 A ASP 211 n 211 ASP 211 A ASN 212 n 212 ASN 212 A LYS 213 n 213 LYS 213 A VAL 214 n 214 VAL 214 A ALA 215 n 215 ASP 215 A VAL 216 n 216 VAL 216 A VAL 217 n 217 VAL 217 A ARG 218 n 218 ARG 218 A ARG 219 n 219 ARG 219 A ALA 220 n 220 ALA 220 A ILE 221 n 221 ILE 221 A ALA 222 n 222 ALA 222 A ILE 223 n 223 ILE 223 A ASN 224 n 224 ASN 224 A GLN 225 n 225 GLN 225 A PRO 226 n 226 PRO 226 A ASN 227 n 227 ASN 227 A PRO 228 n 228 PRO 228 A ALA 229 n 229 ARG 229 A ASP 230 n 230 ASP 230 A GLY 231 n 231 GLY 231 A ILE 232 n 232 ILE 232 A ASP 233 n 233 ASP 233 A VAL 234 n 234 VAL 234 A LEU 235 n 235 LEU 235 A SER 236 n 236 SER 236 A LYS 237 n 237 LYS 237 A VAL 238 n 238 VAL 238 A GLY 239 n 239 GLY 239 A GLY 240 n 240 GLY 240 A PHE 241 n 241 PHE 241 A ASP 242 n 242 ASP 242 A LEU 243 n 243 LEU 243 A VAL 244 n 244 VAL 244 A GLY 245 n 245 GLY 245 A MET 246 n 246 MET 246 A THR 247 n 247 THR 247 A GLY 248 n 248 GLY 248 A VAL 249 n 249 VAL 249 A MET 250 n 250 MET 250 A LEU 251 n 251 LEU 251 A GLY 252 n 252 GLY 252 A ALA 253 n 253 ALA 253 A ALA 254 n 254 ALA 254 A ARG 255 n 255 ARG 255 A CYS 256 n 256 CYS 256 A GLY 257 n 257 GLY 257 A LEU 258 n 258 LEU 258 A PRO 259 n 259 PRO 259 A VAL 260 n 260 VAL 260 A LEU 261 n 261 LEU 261 A LEU 262 n 262 LEU 262 A ASP 263 n 263 ASP 263 A GLY 264 n 264 GLY 264 A PHE 265 n 265 PHE 265 A LEU 266 n 266 LEU 266 A SER 267 n 267 SER 267 A TYR 268 n 268 TYR 268 A SER 269 n 269 SER 269 A ALA 270 n 270 ALA 270 A ALA 271 n 271 ALA 271 A LEU 272 n 272 LEU 272 A ALA 273 n 273 ALA 273 A ALA 274 n 274 ALA 274 A CYS 275 n 275 CYS 275 A GLN 276 n 276 GLN 276 A ILE 277 n 277 ILE 277 A ALA 278 n 278 ALA 278 A PRO 279 n 279 PRO 279 A ALA 280 n 280 ALA 280 A VAL 281 n 281 VAL 281 A ARG 282 n 282 ARG 282 A PRO 283 n 283 PRO 283 A TYR 284 n 284 TYR 284 A LEU 285 n 285 LEU 285 A ILE 286 n 286 ILE 286 A PRO 287 n 287 PRO 287 A SER 288 n 288 SER 288 A HIS 289 n 289 HIS 289 A PHE 290 n 290 PHE 290 A SER 291 n 291 SER 291 A ALA 292 n 292 ALA 292 A GLU 293 n 293 GLU 293 A LYS 294 n 294 LYS 294 A GLY 295 n 295 GLY 295 A ALA 296 n 296 ALA 296 A ALA 297 n 297 ARG 297 A ILE 298 n 298 ILE 298 A ALA 299 n 299 ALA 299 A LEU 300 n 300 LEU 300 A ALA 301 n 301 ALA 301 A HIS 302 n 302 HIS 302 A LEU 303 n 303 LEU 303 A SER 304 n 304 SER 304 A MET 305 n 305 MET 305 A ALA 306 n 306 GLU 306 A PRO 307 n 307 PRO 307 A TYR 308 n 308 TYR 308 A LEU 309 n 309 LEU 309 A HIS 310 n 310 HIS 310 A MET 311 n 311 MET 311 A ALA 312 n 312 ALA 312 A MET 313 n 313 MET 313 A ARG 314 n 314 ARG 314 A LEU 315 n 315 LEU 315 A GLY 316 n 316 GLY 316 A GLU 317 n 317 GLU 317 A GLY 318 n 318 GLY 318 A SER 319 n 319 SER 319 A GLY 320 n 320 GLY 320 A ALA 321 n 321 ALA 321 A ALA 322 n 322 ALA 322 A LEU 323 n 323 LEU 323 A ALA 324 n 324 ALA 324 A MET 325 n 325 MET 325 A PRO 326 n 326 PRO 326 A ILE 327 n 327 ILE 327 A VAL 328 n 328 VAL 328 A GLU 329 n 329 GLU 329 A ALA 330 n 330 ALA 330 A ALA 331 n 331 ALA 331 A CYS 332 n 332 CYS 332 A ALA 333 n 333 ALA 333 A MET 334 n 334 MET 334 A PHE 335 n 335 PHE 335 A HIS 336 n 336 HIS 336 A ASN 337 n 337 ASN 337 A MET 338 n 338 MET 338 A GLY 339 n 339 GLY 339 A GLU 340 n 340 GLU 340 A LEU 341 n 341 LEU 341 A ALA 342 n 342 ALA 342 A ALA 343 n 343 ALA 343 A SER 344 n 344 SER 344 A ASN 345 n 345 ASN 345 A ILE 346 n 346 ILE 346 A VAL 347 n 347 VAL 347 A LEU 348 n 348 LEU 348 A PRO 349 n 349 PRO 349 A n 350 350 A n 351 351 A n 352 352 A n 353 353 A n 354 354 A n 355 355 A n 356 356 A author_and_software_defined_assembly PISA,PQS 2 dimeric 5170 -46 21500 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -x+1,-y+1,z crystal symmetry operation 71.8700000000 90.2200000000 0.0000000000 A O ILE 113 A O ILE 113 A N CYS 67 A N CYS 67 A N LEU 64 A N LEU 64 A O GLY 171 A O GLY 171 A N PHE 170 A N PHE 170 A O LEU 261 A O LEU 261 A N VAL 260 A N VAL 260 A O ILE 286 A O ILE 286 1 A CG HIS 5 A CG HIS 5 1 Y 1 A ND1 HIS 5 A ND1 HIS 5 1 Y 1 A CD2 HIS 5 A CD2 HIS 5 1 Y 1 A CE1 HIS 5 A CE1 HIS 5 1 Y 1 A NE2 HIS 5 A NE2 HIS 5 1 Y 1 A CG GLN 24 A CG GLN 24 1 Y 1 A CD GLN 24 A CD GLN 24 1 Y 1 A OE1 GLN 24 A OE1 GLN 24 1 Y 1 A NE2 GLN 24 A NE2 GLN 24 1 Y 1 A CG LYS 109 A CG LYS 109 1 Y 1 A CD LYS 109 A CD LYS 109 1 Y 1 A CE LYS 109 A CE LYS 109 1 Y 1 A NZ LYS 109 A NZ LYS 109 1 Y 1 A CG ARG 157 A CG ARG 157 1 Y 1 A CD ARG 157 A CD ARG 157 1 Y 1 A NE ARG 157 A NE ARG 157 1 Y 1 A CZ ARG 157 A CZ ARG 157 1 Y 1 A NH1 ARG 157 A NH1 ARG 157 1 Y 1 A NH2 ARG 157 A NH2 ARG 157 1 Y 1 A CG ASP 161 A CG ASP 161 1 Y 1 A OD1 ASP 161 A OD1 ASP 161 1 Y 1 A OD2 ASP 161 A OD2 ASP 161 1 Y 1 A CG ARG 165 A CG ARG 165 1 Y 1 A CD ARG 165 A CD ARG 165 1 Y 1 A NE ARG 165 A NE ARG 165 1 Y 1 A CZ ARG 165 A CZ ARG 165 1 Y 1 A NH1 ARG 165 A NH1 ARG 165 1 Y 1 A NH2 ARG 165 A NH2 ARG 165 1 Y 1 A CG LYS 196 A CG LYS 196 1 Y 1 A CD LYS 196 A CD LYS 196 1 Y 1 A CE LYS 196 A CE LYS 196 1 Y 1 A NZ LYS 196 A NZ LYS 196 1 Y 1 A CG GLU 197 A CG GLU 197 1 Y 1 A CD GLU 197 A CD GLU 197 1 Y 1 A OE1 GLU 197 A OE1 GLU 197 1 Y 1 A OE2 GLU 197 A OE2 GLU 197 1 Y 1 A CG PRO 207 A CG PRO 207 1 Y 1 A CD PRO 207 A CD PRO 207 1 Y 1 A CG ARG 209 A CG ARG 209 1 Y 1 A CD ARG 209 A CD ARG 209 1 Y 1 A NE ARG 209 A NE ARG 209 1 Y 1 A CZ ARG 209 A CZ ARG 209 1 Y 1 A NH1 ARG 209 A NH1 ARG 209 1 Y 1 A NH2 ARG 209 A NH2 ARG 209 1 Y 1 A CG ASP 215 A CG ASP 215 1 Y 1 A OD1 ASP 215 A OD1 ASP 215 1 Y 1 A OD2 ASP 215 A OD2 ASP 215 1 Y 1 A CG ARG 229 A CG ARG 229 1 Y 1 A CD ARG 229 A CD ARG 229 1 Y 1 A NE ARG 229 A NE ARG 229 1 Y 1 A CZ ARG 229 A CZ ARG 229 1 Y 1 A NH1 ARG 229 A NH1 ARG 229 1 Y 1 A NH2 ARG 229 A NH2 ARG 229 1 Y 1 A CG ARG 297 A CG ARG 297 1 Y 1 A CD ARG 297 A CD ARG 297 1 Y 1 A NE ARG 297 A NE ARG 297 1 Y 1 A CZ ARG 297 A CZ ARG 297 1 Y 1 A NH1 ARG 297 A NH1 ARG 297 1 Y 1 A NH2 ARG 297 A NH2 ARG 297 1 Y 1 A CG GLU 306 A CG GLU 306 1 Y 1 A CD GLU 306 A CD GLU 306 1 Y 1 A OE1 GLU 306 A OE1 GLU 306 1 Y 1 A OE2 GLU 306 A OE2 GLU 306 1 Y 1 A MET 1 A MET 1 1 Y 1 A GLN 2 A GLN 2 1 Y 1 A THR 3 A THR 3 1 Y 1 A GLU 350 A GLU 350 1 Y 1 A GLY 351 A GLY 351 1 Y 1 A ASN 352 A ASN 352 1 Y 1 A ALA 353 A ALA 353 1 Y 1 A ASN 354 A ASN 354 1 Y 1 A ALA 355 A ALA 355 1 Y 1 A THR 356 A THR 356 1 Y 1 A LEU 30 -67.73 72.07 1 A ALA 178 80.95 3.97 1 A ASP 263 -119.46 -112.11 1 A SER 288 -113.99 -74.44 1 A ARG 314 -153.50 26.29 1 A GLU 317 67.98 -6.57 0.2 0.173 1.90 500 1177 23431 23431 5.0 random 1 THROUGHOUT 0 0 FOURIER SYNTHESIS PDB entry 1D0S Engh & Huber 1.90 500 107 2540 10 0 2423 0.011 1.45 1.90 1L5N 23431 23431 0.043 1 19.1 3.1 93.0 0.113 1.90 1.96 4.5 1 1.6 78.2 data reduction XDS refinement CNS data scaling XDS Crystal Structure of CobT complexed with imidazole 1 N N 2 N N 3 N N 4 N N The biological assembly is a dimer generated from one monomer in asymmetric unit by crystallographic two-fold axis A LEU 4 A LEU 4 HELX_P A ASP 10 A ASP 10 1 1 7 A ASP 15 A ASP 15 HELX_P A GLY 28 A GLY 28 1 2 14 A LEU 36 A LEU 36 HELX_P A GLY 48 A GLY 48 1 3 13 A MET 49 A MET 49 HELX_P A ASN 53 A ASN 53 5 4 5 A HIS 70 A HIS 70 HELX_P A GLY 76 A GLY 76 5 5 7 A ILE 83 A ILE 83 HELX_P A ARG 94 A ARG 94 1 6 12 A THR 97 A THR 97 HELX_P A ALA 106 A ALA 106 1 7 10 A ASN 179 A ASN 179 HELX_P A GLY 192 A GLY 192 1 9 14 A ASP 194 A ASP 194 HELX_P A VAL 198 A VAL 198 5 10 5 A PRO 206 A PRO 206 HELX_P A SER 208 A SER 208 5 11 3 A ASP 230 A ASP 230 HELX_P A GLY 239 A GLY 239 1 13 10 A GLY 240 A GLY 240 HELX_P A CYS 256 A CYS 256 1 14 17 A GLY 264 A GLY 264 HELX_P A ALA 278 A ALA 278 1 15 15 A PRO 279 A PRO 279 HELX_P A PRO 283 A PRO 283 5 16 5 A GLY 295 A GLY 295 HELX_P A SER 304 A SER 304 1 17 10 A GLY 318 A GLY 318 HELX_P A MET 338 A MET 338 1 18 21 A GLU 340 A GLU 340 HELX_P A ASN 345 A ASN 345 5 19 6 disulf 2.028 A CYS 160 A SG CYS 160 1_555 A CYS 256 A SG CYS 256 1_555 TRANSFERASE CobT, cobalamin synthetic enzyme, phosphoribosyltransferase, 5, 6-dimethylbenzimidazole, nicotinate mononucleotide, TRANSFERASE COBT_SALTY UNP 1 1 Q05603 MQTLHALLRDIPAPDAEAMARTQQHIDGLLKPPGSLGRLETLAVQLAGMPGLNGTPQVGEKAVLVMCADHGVWDEGVAVS PKIVTAIQAANMTRGTTGVCVLAAQAGAKVHVIDVGIDAEPIPGVVNMRVARGCGNIAVGPAMSRLQAEALLLEVSRYAC DLAQRGVTLFGVGELGMANTTPAAAMVSVFTGSDAKEVVGIGANLPPSRIDNKVDVVRRAIAINQPNPRDGIDVLSKVGG FDLVGMTGVMLGAARCGLPVLLDGFLSYSAALAACQIAPAVRPYLIPSHFSAEKGARIALAHLSMEPYLHMAMRLGEGSG AALAMPIVEAACAMFHNMGELAASNIVLPEGNANAT 1 356 1L5N 1 356 Q05603 A 1 1 356 1 ALA conflict THR 159 1L5N A Q05603 UNP 159 159 5 parallel parallel parallel parallel A VAL 126 A VAL 126 A ASN 127 A ASN 127 A GLU 60 A GLU 60 A ALA 68 A ALA 68 A VAL 167 A VAL 167 A LEU 175 A LEU 175 A VAL 260 A VAL 260 A LEU 261 A LEU 261 A LEU 285 A LEU 285 A ILE 286 A ILE 286 BINDING SITE FOR RESIDUE PO4 A 991 A PO4 991 Software 11 BINDING SITE FOR RESIDUE IMD A 990 A IMD 990 Software 4 A ALA 178 A ALA 178 11 1_555 A ASN 179 A ASN 179 11 1_555 A THR 180 A THR 180 11 1_555 A GLY 202 A GLY 202 11 1_555 A ALA 203 A ALA 203 11 1_555 A HOH 1018 D HOH 11 1_555 A HOH 1019 D HOH 11 1_555 A HOH 1024 D HOH 11 1_555 A HOH 1025 D HOH 11 1_555 A HOH 1044 D HOH 11 1_555 A HOH 1076 D HOH 11 1_555 A PRO 32 A PRO 32 4 2_665 A GLN 88 A GLN 88 4 1_555 A LEU 348 A LEU 348 4 2_665 A HOH 1140 D HOH 4 1_555 18 orthorhombic P 21 21 2