1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Cort, J.R. Chiang, Y. Zheng, D. Montelione, G.T. Kennedy, M.A. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 48 733 736 10.1002/prot.10197 12211038 NMR structure of conserved eukaryotic protein ZK652.3 from C. elegans: a ubiquitin-like fold. 2002 10.2210/pdb1l7y/pdb pdb_00001l7y 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 9803.253 HYPOTHETICAL PROTEIN ZK652.3 1 man polymer no no MSGGTAATTAGSKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQPAGNIFLKH GSELRLIPRDRVGH MSGGTAATTAGSKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQPAGNIFLKH GSELRLIPRDRVGH A WR41 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Caenorhabditis Escherichia sample ZK652.3 6239 Caenorhabditis elegans 562 Escherichia coli BL21(DE3)pLysS plasmid pet15B Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-08-14 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name Y RCSB Y RCSB 2002-03-18 REL REL The structure was determined using triple-resonance NMR spectroscopy structures with the lowest energy 26 24 4D_13C-separated_NOESY 3D_simultaneous_13C,15N-separated_NOESY HNHA 3D_15N-SEPARATED_NOESY 10 mM ammonium acetate, 50 mM NaCl 5.5 ambient 298 K the X-PLOR routines dg_full_embed.inp, dgsa.inp, and refine_gentle.inp were used to produce the structural ensemble distance geometry, simulated annealing 9 closest to the average,fewest violations,lowest energy 0.9 mM 99%-13C,99%-15N-ZK652.3 10 mM ammonium acetate, 50 mM NaCl, 10 mM DTT, 5% D2O, pH 5.5 95% H2O/5% D2O 0.9 mM 13C,15N-ZK652.3 10 mM ammonium acetate, 50 mM NaCl, 10 mM DTT, 99% D2O 100% D2O 0.9 mM 10%-13C,99%-15N-ZK652.3 10 mM ammonium acetate, 50 mM NaCl, 10 mM DTT, 5% D2O, pH 5.5 95% H2O/5% D2O 0.9 mM 99%-15N-ZK652.3 10 mM ammonium acetate, 50 mM NaCl, 10 mM DTT, 5% D2O, pH 5.5 95% H2O/5% D2O Varian, Inc. collection VNMR 6.1 MSI processing Felix 98 MSI data analysis Felix 98 A.T. Brunger structure solution X-PLOR 3.840 A.T. Brunger refinement X-PLOR 3.840 800 Varian INOVA 600 Varian INOVA 600 Varian UNITY 750 Varian INOVA MET 1 n 1 MET 1 A SER 2 n 2 SER 2 A GLY 3 n 3 GLY 3 A GLY 4 n 4 GLY 4 A THR 5 n 5 THR 5 A ALA 6 n 6 ALA 6 A ALA 7 n 7 ALA 7 A THR 8 n 8 THR 8 A THR 9 n 9 THR 9 A ALA 10 n 10 ALA 10 A GLY 11 n 11 GLY 11 A SER 12 n 12 SER 12 A LYS 13 n 13 LYS 13 A VAL 14 n 14 VAL 14 A THR 15 n 15 THR 15 A PHE 16 n 16 PHE 16 A LYS 17 n 17 LYS 17 A ILE 18 n 18 ILE 18 A THR 19 n 19 THR 19 A LEU 20 n 20 LEU 20 A THR 21 n 21 THR 21 A SER 22 n 22 SER 22 A ASP 23 n 23 ASP 23 A PRO 24 n 24 PRO 24 A LYS 25 n 25 LYS 25 A LEU 26 n 26 LEU 26 A PRO 27 n 27 PRO 27 A PHE 28 n 28 PHE 28 A LYS 29 n 29 LYS 29 A VAL 30 n 30 VAL 30 A LEU 31 n 31 LEU 31 A SER 32 n 32 SER 32 A VAL 33 n 33 VAL 33 A PRO 34 n 34 PRO 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A THR 37 n 37 THR 37 A PRO 38 n 38 PRO 38 A PHE 39 n 39 PHE 39 A THR 40 n 40 THR 40 A ALA 41 n 41 ALA 41 A VAL 42 n 42 VAL 42 A LEU 43 n 43 LEU 43 A LYS 44 n 44 LYS 44 A PHE 45 n 45 PHE 45 A ALA 46 n 46 ALA 46 A ALA 47 n 47 ALA 47 A GLU 48 n 48 GLU 48 A GLU 49 n 49 GLU 49 A PHE 50 n 50 PHE 50 A LYS 51 n 51 LYS 51 A VAL 52 n 52 VAL 52 A PRO 53 n 53 PRO 53 A ALA 54 n 54 ALA 54 A ALA 55 n 55 ALA 55 A THR 56 n 56 THR 56 A SER 57 n 57 SER 57 A ALA 58 n 58 ALA 58 A ILE 59 n 59 ILE 59 A ILE 60 n 60 ILE 60 A THR 61 n 61 THR 61 A ASN 62 n 62 ASN 62 A ASP 63 n 63 ASP 63 A GLY 64 n 64 GLY 64 A VAL 65 n 65 VAL 65 A GLY 66 n 66 GLY 66 A VAL 67 n 67 VAL 67 A ASN 68 n 68 ASN 68 A PRO 69 n 69 PRO 69 A ALA 70 n 70 ALA 70 A GLN 71 n 71 GLN 71 A PRO 72 n 72 PRO 72 A ALA 73 n 73 ALA 73 A GLY 74 n 74 GLY 74 A ASN 75 n 75 ASN 75 A ILE 76 n 76 ILE 76 A PHE 77 n 77 PHE 77 A LEU 78 n 78 LEU 78 A LYS 79 n 79 LYS 79 A HIS 80 n 80 HIS 80 A GLY 81 n 81 GLY 81 A SER 82 n 82 SER 82 A GLU 83 n 83 GLU 83 A LEU 84 n 84 LEU 84 A ARG 85 n 85 ARG 85 A LEU 86 n 86 LEU 86 A ILE 87 n 87 ILE 87 A PRO 88 n 88 PRO 88 A ARG 89 n 89 ARG 89 A ASP 90 n 90 ASP 90 A ARG 91 n 91 ARG 91 A VAL 92 n 92 VAL 92 A GLY 93 n 93 GLY 93 A HIS 94 n 94 HIS 94 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 33 A O VAL 33 A N VAL 14 A N VAL 14 A N THR 19 A N THR 19 A O LEU 86 A O LEU 86 A O ILE 87 A O ILE 87 A N ALA 58 A N ALA 58 A N ILE 59 A N ILE 59 A O VAL 67 A O VAL 67 1 A ARG 85 0.314 SIDE CHAIN 1 A ARG 89 0.317 SIDE CHAIN 1 A ARG 91 0.304 SIDE CHAIN 2 A ARG 85 0.261 SIDE CHAIN 2 A ARG 89 0.312 SIDE CHAIN 2 A ARG 91 0.310 SIDE CHAIN 3 A ARG 85 0.304 SIDE CHAIN 3 A ARG 89 0.305 SIDE CHAIN 3 A ARG 91 0.309 SIDE CHAIN 4 A ARG 85 0.256 SIDE CHAIN 4 A ARG 89 0.315 SIDE CHAIN 4 A ARG 91 0.312 SIDE CHAIN 5 A ARG 85 0.316 SIDE CHAIN 5 A ARG 89 0.305 SIDE CHAIN 5 A ARG 91 0.316 SIDE CHAIN 6 A ARG 85 0.317 SIDE CHAIN 6 A ARG 89 0.312 SIDE CHAIN 6 A ARG 91 0.306 SIDE CHAIN 7 A ARG 85 0.312 SIDE CHAIN 7 A ARG 89 0.271 SIDE CHAIN 7 A ARG 91 0.313 SIDE CHAIN 8 A ARG 85 0.266 SIDE CHAIN 8 A ARG 89 0.313 SIDE CHAIN 8 A ARG 91 0.279 SIDE CHAIN 9 A ARG 85 0.308 SIDE CHAIN 9 A ARG 89 0.317 SIDE CHAIN 9 A ARG 91 0.226 SIDE CHAIN 10 A ARG 85 0.308 SIDE CHAIN 10 A ARG 89 0.222 SIDE CHAIN 10 A ARG 91 0.291 SIDE CHAIN 11 A ARG 85 0.301 SIDE CHAIN 11 A ARG 89 0.318 SIDE CHAIN 11 A ARG 91 0.215 SIDE CHAIN 12 A ARG 85 0.308 SIDE CHAIN 12 A ARG 89 0.317 SIDE CHAIN 12 A ARG 91 0.318 SIDE CHAIN 13 A ARG 85 0.315 SIDE CHAIN 13 A ARG 89 0.316 SIDE CHAIN 13 A ARG 91 0.316 SIDE CHAIN 14 A ARG 85 0.306 SIDE CHAIN 14 A ARG 89 0.315 SIDE CHAIN 14 A ARG 91 0.275 SIDE CHAIN 15 A ARG 85 0.275 SIDE CHAIN 15 A ARG 89 0.315 SIDE CHAIN 15 A ARG 91 0.317 SIDE CHAIN 16 A ARG 85 0.268 SIDE CHAIN 16 A ARG 89 0.310 SIDE CHAIN 16 A ARG 91 0.311 SIDE CHAIN 17 A ARG 85 0.318 SIDE CHAIN 17 A ARG 89 0.317 SIDE CHAIN 17 A ARG 91 0.291 SIDE CHAIN 18 A ARG 85 0.301 SIDE CHAIN 18 A ARG 89 0.318 SIDE CHAIN 18 A ARG 91 0.277 SIDE CHAIN 19 A ARG 85 0.315 SIDE CHAIN 19 A ARG 89 0.318 SIDE CHAIN 19 A ARG 91 0.317 SIDE CHAIN 20 A ARG 85 0.319 SIDE CHAIN 20 A ARG 89 0.313 SIDE CHAIN 20 A ARG 91 0.284 SIDE CHAIN 21 A ARG 85 0.295 SIDE CHAIN 21 A ARG 89 0.318 SIDE CHAIN 21 A ARG 91 0.307 SIDE CHAIN 22 A ARG 85 0.317 SIDE CHAIN 22 A ARG 89 0.317 SIDE CHAIN 22 A ARG 91 0.311 SIDE CHAIN 23 A ARG 85 0.307 SIDE CHAIN 23 A ARG 89 0.282 SIDE CHAIN 23 A ARG 91 0.319 SIDE CHAIN 24 A ARG 85 0.315 SIDE CHAIN 24 A ARG 89 0.313 SIDE CHAIN 24 A ARG 91 0.307 SIDE CHAIN 1 A ALA 70 -132.96 -41.72 2 A THR 5 -112.20 -70.40 2 A ALA 6 -96.04 -120.76 2 A ALA 7 -103.80 55.10 2 A LYS 25 67.42 124.74 2 A ALA 70 -135.52 -42.69 2 A SER 82 -124.20 -50.87 3 A THR 5 -143.03 -44.62 3 A THR 8 -128.43 -72.21 3 A THR 9 -138.09 -62.83 3 A GLU 83 -58.20 106.43 4 A THR 5 67.91 130.88 4 A GLU 35 -66.62 82.73 4 A SER 36 178.77 -38.80 4 A PHE 50 -83.21 -83.26 4 A LYS 51 174.83 33.59 4 A ALA 70 -142.34 31.14 4 A VAL 92 -107.95 -63.59 5 A THR 5 -155.00 49.05 5 A ALA 10 -128.50 -61.22 5 A LYS 25 -167.73 73.48 5 A LEU 26 -145.96 -66.10 5 A GLU 35 -64.72 83.23 5 A SER 36 -179.13 -39.33 5 A ALA 70 -144.35 34.32 5 A ARG 89 71.38 144.26 6 A SER 2 69.37 97.06 6 A GLU 35 -65.05 83.49 6 A SER 36 -179.78 -37.62 6 A LYS 51 76.45 33.70 6 A ALA 70 -153.80 31.06 6 A HIS 80 -93.33 -62.81 6 A ASP 90 -115.93 78.25 7 A ALA 7 -93.56 34.51 7 A THR 9 73.89 135.28 7 A LEU 26 -176.42 -58.22 7 A PHE 50 -80.31 -81.97 7 A LYS 51 175.14 36.27 7 A ALA 70 -131.72 -39.82 7 A HIS 80 -90.90 -65.28 7 A ARG 89 69.46 119.76 7 A ARG 91 -91.65 -153.38 8 A ALA 70 -134.84 -43.40 8 A HIS 80 -100.60 -63.42 8 A GLU 83 -62.81 99.27 8 A ASP 90 63.90 106.55 9 A SER 2 -127.07 -55.83 9 A THR 5 -105.81 -64.19 9 A ALA 70 -139.80 -48.65 9 A HIS 80 -94.19 -62.31 9 A VAL 92 57.41 89.52 10 A SER 12 -133.11 -63.48 11 A ALA 6 70.82 100.19 11 A SER 12 -143.61 40.02 11 A LYS 25 63.10 -88.04 11 A LEU 26 66.25 163.39 11 A GLU 35 -64.65 82.78 11 A SER 36 -179.58 -39.61 12 A PRO 24 -76.43 -167.90 12 A PHE 50 -81.13 -83.01 12 A LYS 51 175.11 37.12 12 A ALA 70 -133.44 -39.18 12 A HIS 80 -98.55 -60.34 12 A VAL 92 -95.90 -103.70 13 A THR 21 -98.96 52.20 13 A SER 22 -149.58 -54.89 13 A GLU 35 -65.79 83.49 13 A SER 36 178.56 -36.60 13 A ALA 70 -141.75 -48.38 14 A SER 22 -91.70 57.80 14 A LYS 25 65.40 -154.74 14 A GLU 35 -66.01 83.53 14 A SER 36 -179.99 -38.51 14 A ALA 70 -146.69 18.33 14 A HIS 80 -106.54 -65.27 14 A GLU 83 -59.01 106.84 14 A ARG 89 -167.96 113.20 15 A SER 2 -150.53 -54.93 15 A LEU 26 65.34 124.74 15 A GLU 83 -59.73 105.02 16 A LEU 26 65.39 106.35 16 A PHE 50 -83.58 -83.17 16 A LYS 51 176.32 35.77 16 A HIS 80 -96.26 -65.25 16 A ARG 89 62.07 89.12 17 A ALA 7 49.33 72.72 17 A SER 12 -103.90 -62.65 17 A ALA 70 -133.02 -31.13 17 A ARG 91 -130.04 -68.96 18 A THR 5 -161.21 117.34 18 A ALA 7 -134.25 -58.80 18 A LEU 26 62.61 65.25 18 A GLU 35 -64.91 83.29 18 A SER 36 -179.17 -39.77 18 A ALA 70 -130.06 -32.91 18 A ASP 90 -132.19 -50.87 19 A ALA 6 -173.89 -55.12 19 A SER 12 -114.44 67.74 19 A SER 22 -158.66 -65.18 19 A LEU 26 67.52 107.86 19 A LYS 51 70.32 37.81 19 A GLU 83 -56.70 105.79 19 A ARG 89 71.97 128.20 20 A ALA 70 -134.12 -41.84 20 A ARG 89 70.55 143.18 20 A VAL 92 70.03 78.22 21 A SER 2 57.66 84.10 21 A ALA 70 -136.54 -43.41 21 A HIS 80 -97.43 -61.73 21 A GLU 83 -59.38 105.79 21 A ARG 89 65.47 167.67 21 A ASP 90 69.51 152.90 22 A ALA 7 68.80 124.02 23 A ASP 23 60.13 67.58 23 A LYS 25 77.61 -34.76 23 A THR 56 -107.20 41.25 23 A ALA 70 -141.91 -45.88 23 A ARG 89 71.40 141.34 24 A SER 12 -135.85 -48.35 24 A THR 56 -106.19 42.47 24 A ALA 70 -131.42 -40.65 24 A VAL 92 -131.62 -50.91 Solution NMR Structure of C. elegans Protein ZK652.3. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET WR41. 1 N N A PRO 38 A PRO 38 HELX_P A LYS 51 A LYS 51 1 1 14 A PRO 72 A PRO 72 HELX_P A HIS 80 A HIS 80 1 2 9 structural genomics, unknown function C.elegans, unknown function, northeast structural genomics consortium, ZK652.3, ubiquitin fold, beta-grasp fold, Ufm1, Ubiquitin-fold modifier 1, NESG, STRUCTURAL GENOMICS, STRUCTURAL PROTEOMICS, HYPOTHETICAL, PSI, Protein Structure Initiative U185_CAEEL UNP 1 1 P34661 MSGGTAATTAGSKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQPAGNIFLKH GSELRLIPRDRVGH 1 94 1L7Y 1 94 P34661 A 1 1 94 5 anti-parallel parallel anti-parallel anti-parallel A LYS 29 A LYS 29 A PRO 34 A PRO 34 A LYS 13 A LYS 13 A LEU 20 A LEU 20 A GLU 83 A GLU 83 A PRO 88 A PRO 88 A SER 57 A SER 57 A ILE 60 A ILE 60 A GLY 66 A GLY 66 A VAL 67 A VAL 67