0.021446
-0.000000
0.000000
0.000000
0.021446
0.000000
0.000000
0.000000
0.003319
0.00000
0.00000
0.00000
Fong, D.H.
Berghuis, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
46.629
46.629
301.289
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C18 H36 N4 O11
484.499
KANAMYCIN A
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
Y
184
N
C
Y
185
N
N
Y
186
N
C
Y
187
N
C
Y
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
S
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
R
C
N
226
R
C
N
227
S
C
N
228
S
C
N
229
R
C
N
230
N
C
N
231
R
C
N
232
S
C
N
233
R
C
N
234
R
C
N
235
S
C
N
236
N
C
N
237
S
C
N
238
R
C
N
239
S
C
N
240
S
C
N
241
R
C
N
242
N
C
N
243
N
N
N
244
N
N
N
245
N
N
N
246
N
N
N
247
N
O
N
248
N
O
N
249
N
O
N
250
N
O
N
251
N
O
N
252
N
O
N
253
N
O
N
254
N
O
N
255
N
O
N
256
N
O
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
N
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
C
N
347
N
S
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
MG
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
N
390
N
C
N
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
R
C
N
421
N
O
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
N
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
N
N
461
S
C
N
462
N
C
N
463
N
O
N
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
N
471
N
O
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
N
N
485
S
C
N
486
N
C
N
487
N
O
N
488
N
C
N
489
N
C
N
490
N
C
N
491
N
O
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
doub
Y
186
N
doub
N
187
N
sing
Y
188
N
sing
N
189
N
sing
Y
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
Y
432
N
doub
Y
433
N
sing
Y
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
Y
460
N
doub
Y
461
N
sing
Y
462
N
sing
N
463
N
sing
Y
464
N
doub
N
465
N
sing
Y
466
N
doub
N
467
N
sing
Y
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
doub
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
21
2323
2331
10.1093/emboj/21.10.2323
12006485
Substrate promiscuity of an aminoglycoside antibiotic resistance enzyme via target mimicry.
2002
10.2210/pdb1l8t/pdb
pdb_00001l8t
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
110
1
IMAGE PLATE
1999-11-19
MARRESEARCH
CCD
2000-05-01
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.072
1.0
1.5418
ROTATING ANODE
RIGAKU
X8C
NSLS
1.072
SYNCHROTRON
NSLS BEAMLINE X8C
30880.850
Aminoglycoside 3'-Phosphotransferase
2.7.1.95
1
man
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
484.499
KANAMYCIN A
1
syn
non-polymer
18.015
water
65
nat
water
transferase
Kanamycin kinase Type III, Neomycin-Kanamycin phosphotransferase type III, APH(3')III
no
no
AKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER
HDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE
DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVELF
FDLLGIKPDWEKIKYYILLDELF
AKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER
HDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE
DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVELF
FDLLGIKPDWEKIKYYILLDELF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Enterococcus
Escherichia
Escherichia coli
sample
1351
Enterococcus faecalis
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
PPCRG6
2
2.65
53.60
VAPOR DIFFUSION, HANGING DROP
9.0
PEG 600, CHES, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-06-19
1
1
2008-04-28
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal Structure Of 3',5"-Aminoglycoside Phosphotransferase Type Iiia Apoenzyme
Crystal Structure Of 3',5"-Aminoglycoside Phosphotransferase Type Iiia ADP Complex
Crystal Structure Of 3',5"-Aminoglycoside Phosphotransferase Type Iiia Amppnp Complex
RCSB
Y
RCSB
2002-03-21
REL
MG
MAGNESIUM ION
ADP
ADENOSINE-5'-DIPHOSPHATE
KAN
KANAMYCIN A
HOH
water
MG2
301
2
MG
MG
301
A
MG2
302
2
MG
MG
302
A
ADP
300
3
ADP
ADP
300
A
KAN
1
4
KAN
KAN
1
A
WAT
501
5
HOH
HOH
501
A
WAT
502
5
HOH
HOH
502
A
WAT
503
5
HOH
HOH
503
A
WAT
504
5
HOH
HOH
504
A
WAT
505
5
HOH
HOH
505
A
WAT
506
5
HOH
HOH
506
A
WAT
507
5
HOH
HOH
507
A
WAT
508
5
HOH
HOH
508
A
WAT
509
5
HOH
HOH
509
A
WAT
510
5
HOH
HOH
510
A
WAT
511
5
HOH
HOH
511
A
WAT
512
5
HOH
HOH
512
A
WAT
513
5
HOH
HOH
513
A
WAT
514
5
HOH
HOH
514
A
WAT
515
5
HOH
HOH
515
A
WAT
516
5
HOH
HOH
516
A
WAT
517
5
HOH
HOH
517
A
WAT
518
5
HOH
HOH
518
A
WAT
519
5
HOH
HOH
519
A
WAT
520
5
HOH
HOH
520
A
WAT
521
5
HOH
HOH
521
A
WAT
522
5
HOH
HOH
522
A
WAT
523
5
HOH
HOH
523
A
WAT
524
5
HOH
HOH
524
A
WAT
525
5
HOH
HOH
525
A
WAT
526
5
HOH
HOH
526
A
WAT
527
5
HOH
HOH
527
A
WAT
528
5
HOH
HOH
528
A
WAT
529
5
HOH
HOH
529
A
WAT
530
5
HOH
HOH
530
A
WAT
531
5
HOH
HOH
531
A
WAT
532
5
HOH
HOH
532
A
WAT
533
5
HOH
HOH
533
A
WAT
534
5
HOH
HOH
534
A
WAT
535
5
HOH
HOH
535
A
WAT
536
5
HOH
HOH
536
A
WAT
537
5
HOH
HOH
537
A
WAT
538
5
HOH
HOH
538
A
WAT
539
5
HOH
HOH
539
A
WAT
540
5
HOH
HOH
540
A
WAT
541
5
HOH
HOH
541
A
WAT
542
5
HOH
HOH
542
A
WAT
543
5
HOH
HOH
543
A
WAT
544
5
HOH
HOH
544
A
WAT
545
5
HOH
HOH
545
A
WAT
546
5
HOH
HOH
546
A
WAT
547
5
HOH
HOH
547
A
WAT
548
5
HOH
HOH
548
A
WAT
549
5
HOH
HOH
549
A
WAT
550
5
HOH
HOH
550
A
WAT
551
5
HOH
HOH
551
A
WAT
552
5
HOH
HOH
552
A
WAT
553
5
HOH
HOH
553
A
WAT
554
5
HOH
HOH
554
A
WAT
555
5
HOH
HOH
555
A
WAT
556
5
HOH
HOH
556
A
WAT
557
5
HOH
HOH
557
A
WAT
558
5
HOH
HOH
558
A
WAT
559
5
HOH
HOH
559
A
WAT
560
5
HOH
HOH
560
A
WAT
561
5
HOH
HOH
561
A
WAT
562
5
HOH
HOH
562
A
WAT
563
5
HOH
HOH
563
A
WAT
564
5
HOH
HOH
564
A
WAT
565
5
HOH
HOH
565
A
ALA
2
n
1
ALA
2
A
LYS
3
n
2
LYS
3
A
MET
4
n
3
MET
4
A
ARG
5
n
4
ARG
5
A
ILE
6
n
5
ILE
6
A
SER
7
n
6
SER
7
A
PRO
8
n
7
PRO
8
A
GLU
9
n
8
GLU
9
A
LEU
10
n
9
LEU
10
A
LYS
11
n
10
LYS
11
A
LYS
12
n
11
LYS
12
A
LEU
13
n
12
LEU
13
A
ILE
14
n
13
ILE
14
A
GLU
15
n
14
GLU
15
A
LYS
16
n
15
LYS
16
A
TYR
17
n
16
TYR
17
A
ARG
18
n
17
ARG
18
A
CYS
19
n
18
CYS
19
A
VAL
20
n
19
VAL
20
A
LYS
21
n
20
LYS
21
A
ASP
22
n
21
ASP
22
A
THR
23
n
22
THR
23
A
GLU
24
n
23
GLU
24
A
GLY
25
n
24
GLY
25
A
MET
26
n
25
MET
26
A
SER
27
n
26
SER
27
A
PRO
28
n
27
PRO
28
A
ALA
29
n
28
ALA
29
A
LYS
30
n
29
LYS
30
A
VAL
31
n
30
VAL
31
A
TYR
32
n
31
TYR
32
A
LYS
33
n
32
LYS
33
A
LEU
34
n
33
LEU
34
A
VAL
35
n
34
VAL
35
A
GLY
36
n
35
GLY
36
A
GLU
37
n
36
GLU
37
A
ASN
38
n
37
ASN
38
A
GLU
39
n
38
GLU
39
A
ASN
40
n
39
ASN
40
A
LEU
41
n
40
LEU
41
A
TYR
42
n
41
TYR
42
A
LEU
43
n
42
LEU
43
A
LYS
44
n
43
LYS
44
A
MET
45
n
44
MET
45
A
THR
46
n
45
THR
46
A
ASP
47
n
46
ASP
47
A
SER
48
n
47
SER
48
A
ARG
49
n
48
ARG
49
A
TYR
50
n
49
TYR
50
A
LYS
51
n
50
LYS
51
A
GLY
52
n
51
GLY
52
A
THR
53
n
52
THR
53
A
THR
54
n
53
THR
54
A
TYR
55
n
54
TYR
55
A
ASP
56
n
55
ASP
56
A
VAL
57
n
56
VAL
57
A
GLU
58
n
57
GLU
58
A
ARG
59
n
58
ARG
59
A
GLU
60
n
59
GLU
60
A
LYS
61
n
60
LYS
61
A
ASP
62
n
61
ASP
62
A
MET
63
n
62
MET
63
A
MET
64
n
63
MET
64
A
LEU
65
n
64
LEU
65
A
TRP
66
n
65
TRP
66
A
LEU
67
n
66
LEU
67
A
GLU
68
n
67
GLU
68
A
GLY
69
n
68
GLY
69
A
LYS
70
n
69
LYS
70
A
LEU
71
n
70
LEU
71
A
PRO
72
n
71
PRO
72
A
VAL
73
n
72
VAL
73
A
PRO
74
n
73
PRO
74
A
LYS
75
n
74
LYS
75
A
VAL
76
n
75
VAL
76
A
LEU
77
n
76
LEU
77
A
HIS
78
n
77
HIS
78
A
PHE
79
n
78
PHE
79
A
GLU
80
n
79
GLU
80
A
ARG
81
n
80
ARG
81
A
HIS
82
n
81
HIS
82
A
ASP
83
n
82
ASP
83
A
GLY
84
n
83
GLY
84
A
TRP
85
n
84
TRP
85
A
SER
86
n
85
SER
86
A
ASN
87
n
86
ASN
87
A
LEU
88
n
87
LEU
88
A
LEU
89
n
88
LEU
89
A
MET
90
n
89
MET
90
A
SER
91
n
90
SER
91
A
GLU
92
n
91
GLU
92
A
ALA
93
n
92
ALA
93
A
ASP
94
n
93
ASP
94
A
GLY
95
n
94
GLY
95
A
VAL
96
n
95
VAL
96
A
LEU
97
n
96
LEU
97
A
CYS
98
n
97
CYS
98
A
SER
99
n
98
SER
99
A
GLU
100
n
99
GLU
100
A
GLU
101
n
100
GLU
101
A
TYR
102
n
101
TYR
102
A
GLU
103
n
102
GLU
103
A
ASP
104
n
103
ASP
104
A
GLU
105
n
104
GLU
105
A
GLN
106
n
105
GLN
106
A
SER
107
n
106
SER
107
A
PRO
108
n
107
PRO
108
A
GLU
109
n
108
GLU
109
A
LYS
110
n
109
LYS
110
A
ILE
111
n
110
ILE
111
A
ILE
112
n
111
ILE
112
A
GLU
113
n
112
GLU
113
A
LEU
114
n
113
LEU
114
A
TYR
115
n
114
TYR
115
A
ALA
116
n
115
ALA
116
A
GLU
117
n
116
GLU
117
A
CYS
118
n
117
CYS
118
A
ILE
119
n
118
ILE
119
A
ARG
120
n
119
ARG
120
A
LEU
121
n
120
LEU
121
A
PHE
122
n
121
PHE
122
A
HIS
123
n
122
HIS
123
A
SER
124
n
123
SER
124
A
ILE
125
n
124
ILE
125
A
ASP
126
n
125
ASP
126
A
ILE
127
n
126
ILE
127
A
SER
128
n
127
SER
128
A
ASP
129
n
128
ASP
129
A
CYS
130
n
129
CYS
130
A
PRO
131
n
130
PRO
131
A
TYR
132
n
131
TYR
132
A
THR
133
n
132
THR
133
A
ASN
134
n
133
ASN
134
A
SER
135
n
134
SER
135
A
LEU
136
n
135
LEU
136
A
ASP
137
n
136
ASP
137
A
SER
138
n
137
SER
138
A
ARG
139
n
138
ARG
139
A
LEU
140
n
139
LEU
140
A
ALA
141
n
140
ALA
141
A
GLU
142
n
141
GLU
142
A
LEU
143
n
142
LEU
143
A
ASP
144
n
143
ASP
144
A
TYR
145
n
144
TYR
145
A
LEU
146
n
145
LEU
146
A
LEU
147
n
146
LEU
147
A
ASN
148
n
147
ASN
148
A
ASN
149
n
148
ASN
149
A
ASP
150
n
149
ASP
150
A
LEU
151
n
150
LEU
151
A
ALA
152
n
151
ALA
152
A
ASP
153
n
152
ASP
153
A
VAL
154
n
153
VAL
154
A
ASP
155
n
154
ASP
155
A
CYS
156
n
155
CYS
156
A
GLU
157
n
156
GLU
157
A
ASN
158
n
157
ASN
158
A
TRP
159
n
158
TRP
159
A
GLU
160
n
159
GLU
160
A
GLU
161
n
160
GLU
161
A
ASP
162
n
161
ASP
162
A
THR
163
n
162
THR
163
A
PRO
164
n
163
PRO
164
A
PHE
165
n
164
PHE
165
A
LYS
166
n
165
LYS
166
A
ASP
167
n
166
ASP
167
A
PRO
168
n
167
PRO
168
A
ARG
169
n
168
ARG
169
A
GLU
170
n
169
GLU
170
A
LEU
171
n
170
LEU
171
A
TYR
172
n
171
TYR
172
A
ASP
173
n
172
ASP
173
A
PHE
174
n
173
PHE
174
A
LEU
175
n
174
LEU
175
A
LYS
176
n
175
LYS
176
A
THR
177
n
176
THR
177
A
GLU
178
n
177
GLU
178
A
LYS
179
n
178
LYS
179
A
PRO
180
n
179
PRO
180
A
GLU
181
n
180
GLU
181
A
GLU
182
n
181
GLU
182
A
GLU
183
n
182
GLU
183
A
LEU
184
n
183
LEU
184
A
VAL
185
n
184
VAL
185
A
PHE
186
n
185
PHE
186
A
SER
187
n
186
SER
187
A
HIS
188
n
187
HIS
188
A
GLY
189
n
188
GLY
189
A
ASP
190
n
189
ASP
190
A
LEU
191
n
190
LEU
191
A
GLY
192
n
191
GLY
192
A
ASP
193
n
192
ASP
193
A
SER
194
n
193
SER
194
A
ASN
195
n
194
ASN
195
A
ILE
196
n
195
ILE
196
A
PHE
197
n
196
PHE
197
A
VAL
198
n
197
VAL
198
A
LYS
199
n
198
LYS
199
A
ASP
200
n
199
ASP
200
A
GLY
201
n
200
GLY
201
A
LYS
202
n
201
LYS
202
A
VAL
203
n
202
VAL
203
A
SER
204
n
203
SER
204
A
GLY
205
n
204
GLY
205
A
PHE
206
n
205
PHE
206
A
ILE
207
n
206
ILE
207
A
ASP
208
n
207
ASP
208
A
LEU
209
n
208
LEU
209
A
GLY
210
n
209
GLY
210
A
ARG
211
n
210
ARG
211
A
SER
212
n
211
SER
212
A
GLY
213
n
212
GLY
213
A
ARG
214
n
213
ARG
214
A
ALA
215
n
214
ALA
215
A
ASP
216
n
215
ASP
216
A
LYS
217
n
216
LYS
217
A
TRP
218
n
217
TRP
218
A
TYR
219
n
218
TYR
219
A
ASP
220
n
219
ASP
220
A
ILE
221
n
220
ILE
221
A
ALA
222
n
221
ALA
222
A
PHE
223
n
222
PHE
223
A
CYS
224
n
223
CYS
224
A
VAL
225
n
224
VAL
225
A
ARG
226
n
225
ARG
226
A
SER
227
n
226
SER
227
A
ILE
228
n
227
ILE
228
A
ARG
229
n
228
ARG
229
A
GLU
230
n
229
GLU
230
A
ASP
231
n
230
ASP
231
A
ILE
232
n
231
ILE
232
A
GLY
233
n
232
GLY
233
A
GLU
234
n
233
GLU
234
A
GLU
235
n
234
GLU
235
A
GLN
236
n
235
GLN
236
A
TYR
237
n
236
TYR
237
A
VAL
238
n
237
VAL
238
A
GLU
239
n
238
GLU
239
A
LEU
240
n
239
LEU
240
A
PHE
241
n
240
PHE
241
A
PHE
242
n
241
PHE
242
A
ASP
243
n
242
ASP
243
A
LEU
244
n
243
LEU
244
A
LEU
245
n
244
LEU
245
A
GLY
246
n
245
GLY
246
A
ILE
247
n
246
ILE
247
A
LYS
248
n
247
LYS
248
A
PRO
249
n
248
PRO
249
A
ASP
250
n
249
ASP
250
A
TRP
251
n
250
TRP
251
A
GLU
252
n
251
GLU
252
A
LYS
253
n
252
LYS
253
A
ILE
254
n
253
ILE
254
A
LYS
255
n
254
LYS
255
A
TYR
256
n
255
TYR
256
A
TYR
257
n
256
TYR
257
A
ILE
258
n
257
ILE
258
A
LEU
259
n
258
LEU
259
A
LEU
260
n
259
LEU
260
A
ASP
261
n
260
ASP
261
A
GLU
262
n
261
GLU
262
A
LEU
263
n
262
LEU
263
A
PHE
264
n
263
PHE
264
A
author_defined_assembly
1
monomeric
A
ASN
195
A
OD1
ASN
194
1_555
A
MG
301
B
MG
MG
1_555
A
ASP
208
A
OD2
ASP
207
1_555
90.5
A
ASN
195
A
OD1
ASN
194
1_555
A
MG
301
B
MG
MG
1_555
A
ADP
300
D
O2A
ADP
1_555
99.9
A
ASP
208
A
OD2
ASP
207
1_555
A
MG
301
B
MG
MG
1_555
A
ADP
300
D
O2A
ADP
1_555
91.4
A
ASN
195
A
OD1
ASN
194
1_555
A
MG
301
B
MG
MG
1_555
A
ADP
300
D
O3B
ADP
1_555
170.6
A
ASP
208
A
OD2
ASP
207
1_555
A
MG
301
B
MG
MG
1_555
A
ADP
300
D
O3B
ADP
1_555
80.1
A
ADP
300
D
O2A
ADP
1_555
A
MG
301
B
MG
MG
1_555
A
ADP
300
D
O3B
ADP
1_555
80.8
A
ASN
195
A
OD1
ASN
194
1_555
A
MG
301
B
MG
MG
1_555
A
HOH
526
F
O
HOH
1_555
100.1
A
ASP
208
A
OD2
ASP
207
1_555
A
MG
301
B
MG
MG
1_555
A
HOH
526
F
O
HOH
1_555
166.0
A
ADP
300
D
O2A
ADP
1_555
A
MG
301
B
MG
MG
1_555
A
HOH
526
F
O
HOH
1_555
95.7
A
ADP
300
D
O3B
ADP
1_555
A
MG
301
B
MG
MG
1_555
A
HOH
526
F
O
HOH
1_555
89.2
A
ASN
195
A
OD1
ASN
194
1_555
A
MG
301
B
MG
MG
1_555
A
HOH
528
F
O
HOH
1_555
102.7
A
ASP
208
A
OD2
ASP
207
1_555
A
MG
301
B
MG
MG
1_555
A
HOH
528
F
O
HOH
1_555
83.3
A
ADP
300
D
O2A
ADP
1_555
A
MG
301
B
MG
MG
1_555
A
HOH
528
F
O
HOH
1_555
156.8
A
ADP
300
D
O3B
ADP
1_555
A
MG
301
B
MG
MG
1_555
A
HOH
528
F
O
HOH
1_555
76.0
A
HOH
526
F
O
HOH
1_555
A
MG
301
B
MG
MG
1_555
A
HOH
528
F
O
HOH
1_555
85.4
A
ASP
208
A
OD2
ASP
207
1_555
A
MG
302
C
MG
MG
1_555
A
ASP
208
A
OD1
ASP
207
1_555
54.1
A
ASP
208
A
OD2
ASP
207
1_555
A
MG
302
C
MG
MG
1_555
A
ADP
300
D
O1B
ADP
1_555
75.1
A
ASP
208
A
OD1
ASP
207
1_555
A
MG
302
C
MG
MG
1_555
A
ADP
300
D
O1B
ADP
1_555
82.2
A
ASP
208
A
OD2
ASP
207
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
527
F
O
HOH
1_555
89.3
A
ASP
208
A
OD1
ASP
207
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
527
F
O
HOH
1_555
143.3
A
ADP
300
D
O1B
ADP
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
527
F
O
HOH
1_555
85.6
A
ASP
208
A
OD2
ASP
207
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
539
F
O
HOH
1_555
79.8
A
ASP
208
A
OD1
ASP
207
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
539
F
O
HOH
1_555
87.8
A
ADP
300
D
O1B
ADP
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
539
F
O
HOH
1_555
154.2
A
HOH
527
F
O
HOH
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
539
F
O
HOH
1_555
88.5
A
ASP
208
A
OD2
ASP
207
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
562
F
O
HOH
1_555
161.0
A
ASP
208
A
OD1
ASP
207
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
562
F
O
HOH
1_555
111.4
A
ADP
300
D
O1B
ADP
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
562
F
O
HOH
1_555
117.8
A
HOH
527
F
O
HOH
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
562
F
O
HOH
1_555
104.9
A
HOH
539
F
O
HOH
1_555
A
MG
302
C
MG
MG
1_555
A
HOH
562
F
O
HOH
1_555
88.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
20
A
N
VAL
19
A
O
LYS
33
A
O
LYS
32
A
N
LEU
34
A
N
LEU
33
A
O
LEU
41
A
O
LEU
40
A
N
LYS
44
A
N
LYS
43
A
O
LEU
88
A
O
LEU
87
A
O
LEU
89
A
O
LEU
88
A
N
HIS
78
A
N
HIS
77
A
N
VAL
96
A
N
VAL
95
A
O
VAL
198
A
O
VAL
197
A
N
PHE
197
A
N
PHE
196
A
O
SER
204
A
O
SER
203
A
N
SER
187
A
N
SER
186
A
O
GLY
213
A
O
GLY
212
1
A
CD
LYS
11
A
CD
LYS
10
0
Y
1
A
CE
LYS
11
A
CE
LYS
10
0
Y
1
A
NZ
LYS
11
A
NZ
LYS
10
0
Y
1
A
CG
LYS
12
A
CG
LYS
11
0
Y
1
A
CD
LYS
12
A
CD
LYS
11
0
Y
1
A
CE
LYS
12
A
CE
LYS
11
0
Y
1
A
NZ
LYS
12
A
NZ
LYS
11
0
Y
1
A
CE
LYS
30
A
CE
LYS
29
0
Y
1
A
NZ
LYS
30
A
NZ
LYS
29
0
Y
1
A
CB
LYS
51
A
CB
LYS
50
0
Y
1
A
CG
LYS
51
A
CG
LYS
50
0
Y
1
A
CD
LYS
51
A
CD
LYS
50
0
Y
1
A
CE
LYS
51
A
CE
LYS
50
0
Y
1
A
NZ
LYS
51
A
NZ
LYS
50
0
Y
1
A
CB
LYS
75
A
CB
LYS
74
0
Y
1
A
CG
LYS
75
A
CG
LYS
74
0
Y
1
A
CD
LYS
75
A
CD
LYS
74
0
Y
1
A
CE
LYS
75
A
CE
LYS
74
0
Y
1
A
NZ
LYS
75
A
NZ
LYS
74
0
Y
1
A
CG
GLU
103
A
CG
GLU
102
0
Y
1
A
CD
GLU
103
A
CD
GLU
102
0
Y
1
A
OE1
GLU
103
A
OE1
GLU
102
0
Y
1
A
OE2
GLU
103
A
OE2
GLU
102
0
Y
1
A
CB
ASP
104
A
CB
ASP
103
0
Y
1
A
CG
ASP
104
A
CG
ASP
103
0
Y
1
A
OD1
ASP
104
A
OD1
ASP
103
0
Y
1
A
OD2
ASP
104
A
OD2
ASP
103
0
Y
1
A
CB
GLU
105
A
CB
GLU
104
0
Y
1
A
CG
GLU
105
A
CG
GLU
104
0
Y
1
A
CD
GLU
105
A
CD
GLU
104
0
Y
1
A
OE1
GLU
105
A
OE1
GLU
104
0
Y
1
A
OE2
GLU
105
A
OE2
GLU
104
0
Y
1
A
CB
GLN
106
A
CB
GLN
105
0
Y
1
A
CG
GLN
106
A
CG
GLN
105
0
Y
1
A
CD
GLN
106
A
CD
GLN
105
0
Y
1
A
OE1
GLN
106
A
OE1
GLN
105
0
Y
1
A
NE2
GLN
106
A
NE2
GLN
105
0
Y
1
A
CG
LYS
110
A
CG
LYS
109
0
Y
1
A
CD
LYS
110
A
CD
LYS
109
0
Y
1
A
CE
LYS
110
A
CE
LYS
109
0
Y
1
A
NZ
LYS
110
A
NZ
LYS
109
0
Y
1
A
CD
GLU
161
A
CD
GLU
160
0
Y
1
A
OE1
GLU
161
A
OE1
GLU
160
0
Y
1
A
OE2
GLU
161
A
OE2
GLU
160
0
Y
1
A
CG
LYS
166
A
CG
LYS
165
0
Y
1
A
CD
LYS
166
A
CD
LYS
165
0
Y
1
A
CE
LYS
166
A
CE
LYS
165
0
Y
1
A
NZ
LYS
166
A
NZ
LYS
165
0
Y
1
A
CD
GLU
181
A
CD
GLU
180
0
Y
1
A
OE1
GLU
181
A
OE1
GLU
180
0
Y
1
A
OE2
GLU
181
A
OE2
GLU
180
0
Y
1
A
CD
GLU
183
A
CD
GLU
182
0
Y
1
A
OE1
GLU
183
A
OE1
GLU
182
0
Y
1
A
OE2
GLU
183
A
OE2
GLU
182
0
Y
1
A
CG1
ILE
232
A
CG1
ILE
231
0
Y
1
A
CG2
ILE
232
A
CG2
ILE
231
0
Y
1
A
CD1
ILE
232
A
CD1
ILE
231
0
Y
1
A
CB
GLU
235
A
CB
GLU
234
0
Y
1
A
CG
GLU
235
A
CG
GLU
234
0
Y
1
A
CD
GLU
235
A
CD
GLU
234
0
Y
1
A
OE1
GLU
235
A
OE1
GLU
234
0
Y
1
A
OE2
GLU
235
A
OE2
GLU
234
0
Y
1
A
CG
GLN
236
A
CG
GLN
235
0
Y
1
A
CD
GLN
236
A
CD
GLN
235
0
Y
1
A
OE1
GLN
236
A
OE1
GLN
235
0
Y
1
A
NE2
GLN
236
A
NE2
GLN
235
0
Y
1
A
CG
GLU
239
A
CG
GLU
238
0
Y
1
A
CD
GLU
239
A
CD
GLU
238
0
Y
1
A
OE1
GLU
239
A
OE1
GLU
238
0
Y
1
A
OE2
GLU
239
A
OE2
GLU
238
0
Y
1
A
CD
LYS
255
A
CD
LYS
254
0
Y
1
A
CE
LYS
255
A
CE
LYS
254
0
Y
1
A
NZ
LYS
255
A
NZ
LYS
254
0
Y
1
A
ALA
2
A
ALA
1
0
Y
1
A
LYS
3
A
LYS
2
0
Y
1
A
MET
4
A
MET
3
0
Y
1
A
A
SG
SG
CYS
CYS
19
156
1.63
1_555
7_643
1
A
MET
4
79.63
-19.60
1
A
ARG
5
-148.55
-110.51
1
A
GLU
39
-170.98
-167.43
1
A
LYS
70
-133.27
-33.37
1
A
GLU
103
-38.04
-15.44
1
A
ASP
104
-170.61
81.99
1
A
GLN
106
-98.56
52.23
1
A
ASN
134
-106.12
57.20
1
A
CYS
156
-110.89
50.57
1
A
PRO
164
-56.74
-70.39
1
A
PHE
165
-19.86
140.37
1
A
LYS
179
-35.12
124.00
1
A
ASP
190
-150.56
65.19
1
A
ASP
193
-65.97
2.25
1
A
ASP
208
59.56
77.92
1
A
ILE
232
-152.90
56.57
1
A
GLU
234
169.43
91.41
0.2910000
0.2340000
2.4
40
1297
12186
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
ENGH & HUBER
0.46
0.36
5
0.56
0.41
2.4
40
65
2297
62
0
2170
1.321
0.007
21.4
0.4490000
0.037
0.3600000
2.55
144
1321
57.8
2.4
40.0
1L8T
12532
0.1000000
1
8.0
7.3
88.4
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Crystal Structure Of 3',5"-Aminoglycoside Phosphotransferase Type IIIa ADP Kanamycin A Complex
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
SER
7
A
SER
6
HELX_P
A
LYS
16
A
LYS
15
1
1
10
A
ASP
47
A
ASP
46
HELX_P
A
LYS
51
A
LYS
50
5
2
5
A
ASP
56
A
ASP
55
HELX_P
A
LEU
67
A
LEU
66
1
3
12
A
CYS
98
A
CYS
97
HELX_P
A
GLU
103
A
GLU
102
1
4
6
A
SER
107
A
SER
106
HELX_P
A
SER
124
A
SER
123
1
5
18
A
SER
135
A
SER
134
HELX_P
A
ASN
149
A
ASN
148
1
6
15
A
ASP
167
A
ASP
166
HELX_P
A
GLU
178
A
GLU
177
1
7
12
A
LYS
217
A
LYS
216
HELX_P
A
ILE
232
A
ILE
231
1
8
16
A
GLU
234
A
GLU
233
HELX_P
A
GLY
246
A
GLY
245
1
9
13
A
ASP
250
A
ASP
249
HELX_P
A
GLU
262
A
GLU
261
1
10
13
metalc
1.860
A
ASN
195
A
OD1
ASN
194
1_555
A
MG
301
B
MG
MG
1_555
metalc
1.976
A
ASP
208
A
OD2
ASP
207
1_555
A
MG
301
B
MG
MG
1_555
metalc
2.584
A
ASP
208
A
OD2
ASP
207
1_555
A
MG
302
C
MG
MG
1_555
metalc
2.159
A
ASP
208
A
OD1
ASP
207
1_555
A
MG
302
C
MG
MG
1_555
metalc
1.815
A
ADP
300
D
O2A
ADP
1_555
A
MG
301
B
MG
MG
1_555
metalc
2.094
A
ADP
300
D
O3B
ADP
1_555
A
MG
301
B
MG
MG
1_555
metalc
1.957
A
ADP
300
D
O1B
ADP
1_555
A
MG
302
C
MG
MG
1_555
metalc
1.834
A
MG
301
B
MG
MG
1_555
A
HOH
526
F
O
HOH
1_555
metalc
2.025
A
MG
301
B
MG
MG
1_555
A
HOH
528
F
O
HOH
1_555
metalc
1.970
A
MG
302
C
MG
MG
1_555
A
HOH
527
F
O
HOH
1_555
metalc
1.844
A
MG
302
C
MG
MG
1_555
A
HOH
539
F
O
HOH
1_555
metalc
1.986
A
MG
302
C
MG
MG
1_555
A
HOH
562
F
O
HOH
1_555
TRANSFERASE
TRANSFERASE
KKA3_ENTFA
UNP
1
2
P0A3Y5
AKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER
HDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE
DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVELF
FDLLGIKPDWEKIKYYILLDELF
2
264
1L8T
2
264
P0A3Y5
A
1
1
263
5
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
18
A
ARG
17
A
LYS
21
A
LYS
20
A
LYS
30
A
LYS
29
A
VAL
35
A
VAL
34
A
ASN
40
A
ASN
39
A
THR
46
A
THR
45
A
TRP
85
A
TRP
84
A
SER
91
A
SER
90
A
VAL
76
A
VAL
75
A
HIS
82
A
HIS
81
A
VAL
96
A
VAL
95
A
LEU
97
A
LEU
96
A
ILE
196
A
ILE
195
A
VAL
198
A
VAL
197
A
VAL
203
A
VAL
202
A
PHE
206
A
PHE
205
A
LEU
184
A
LEU
183
A
SER
187
A
SER
186
A
GLY
213
A
GLY
212
A
ASP
216
A
ASP
215
BINDING SITE FOR RESIDUE MG A 301
A
MG
301
Software
5
BINDING SITE FOR RESIDUE MG A 302
A
MG
302
Software
5
BINDING SITE FOR RESIDUE ADP A 300
A
ADP
300
Software
26
BINDING SITE FOR RESIDUE KAN A 1
A
KAN
1
Software
18
A
ASN
195
A
ASN
194
5
1_555
A
ASP
208
A
ASP
207
5
1_555
A
ADP
300
D
ADP
5
1_555
A
HOH
526
F
HOH
5
1_555
A
HOH
528
F
HOH
5
1_555
A
ASP
208
A
ASP
207
5
1_555
A
ADP
300
D
ADP
5
1_555
A
HOH
527
F
HOH
5
1_555
A
HOH
539
F
HOH
5
1_555
A
HOH
562
F
HOH
5
1_555
A
ASP
22
A
ASP
21
26
1_555
A
GLU
24
A
GLU
23
26
1_555
A
GLY
25
A
GLY
24
26
1_555
A
MET
26
A
MET
25
26
1_555
A
SER
27
A
SER
26
26
1_555
A
TYR
42
A
TYR
41
26
1_555
A
LYS
44
A
LYS
43
26
1_555
A
MET
90
A
MET
89
26
1_555
A
SER
91
A
SER
90
26
1_555
A
GLU
92
A
GLU
91
26
1_555
A
ALA
93
A
ALA
92
26
1_555
A
LEU
97
A
LEU
96
26
1_555
A
SER
194
A
SER
193
26
1_555
A
ASN
195
A
ASN
194
26
1_555
A
PHE
197
A
PHE
196
26
1_555
A
ILE
207
A
ILE
206
26
1_555
A
ASP
208
A
ASP
207
26
1_555
A
MG
301
B
MG
26
1_555
A
MG
302
C
MG
26
1_555
A
HOH
521
F
HOH
26
1_555
A
HOH
526
F
HOH
26
1_555
A
HOH
527
F
HOH
26
1_555
A
HOH
528
F
HOH
26
1_555
A
HOH
535
F
HOH
26
1_555
A
HOH
536
F
HOH
26
1_555
A
HOH
564
F
HOH
26
1_555
A
MET
26
A
MET
25
18
1_555
A
GLU
157
A
GLU
156
18
1_555
A
ASN
158
A
ASN
157
18
1_555
A
GLU
160
A
GLU
159
18
1_555
A
ASP
190
A
ASP
189
18
1_555
A
ARG
226
A
ARG
225
18
1_555
A
SER
227
A
SER
226
18
1_555
A
GLU
230
A
GLU
229
18
1_555
A
ASP
261
A
ASP
260
18
1_555
A
GLU
262
A
GLU
261
18
1_555
A
PHE
264
A
PHE
263
18
1_555
A
HOH
517
F
HOH
18
1_555
A
HOH
527
F
HOH
18
1_555
A
HOH
528
F
HOH
18
1_555
A
HOH
530
F
HOH
18
1_555
A
HOH
538
F
HOH
18
1_555
A
HOH
563
F
HOH
18
1_555
A
HOH
564
F
HOH
18
1_555
95
P 43 2 2