1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Yang, W.
Xu, Y.
Wu, J.
Zeng, W.
Shi, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
42
1930
1938
10.1021/bi026372x
12590579
Solution structure and DNA binding property of the fifth HMG box domain in comparison with the first HMG box domain in human upstream binding factor
2003
10.2210/pdb1l8z/pdb
pdb_00001l8z
There are several chirality errors in chain A
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
10891.573
upstream binding factor 1
HMG box 5 domain
1
man
polymer
no
no
MGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNS
SKKLEHHHHHH
MGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNS
SKKLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
HSUBF
9606
Homo sapiens
562
Escherichia coli
BL2(DE3)
plasmid
PET-22b
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Database references
1
0
2002-06-05
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
1
4
2022-12-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
_struct_ref_seq_dif.details
1L8Y contains 24 structures of the same protein
RCSB
Y
PDBJ
2002-03-22
REL
The structure was determined using triple-resonance NMR spectroscopy
1
3D_13C-separated_NOESY
3D_15N-separated_NOESY
3D_13C-separated_NOESY
45 mM NaPO4
5.5
ambient
300
K
The structures are based on the total number constraints of 1220, including 1098 NOE-derived distance constraints, 104 dihedral angle constraints, 18 hydrogen bond constraints.
No peptide bond linking between residues 82 and 83 results from
disorder in the tail region of the protein and lack of restraints.
simulated annealing
1
minimized average structure
3mM hUBF HMG box 5, U-15N, 13C; 45mM NaPO4
90% H2O/10% D2O
3mM hUBF HMG box 5, U-15N, 13C; 45mM NaPO4
100% D2O
F.Delagio and A.Bax
processing
NMRPipp
D.S.Garrett
data analysis
PIPP
A.T.Brunger
structure solution
CNS
1.0
A.T.Brunger
refinement
CNS
500
Bruker
DMX
n
1
0
A
GLY
1
n
2
GLY
1
A
LYS
2
n
3
LYS
2
A
LEU
3
n
4
LEU
3
A
PRO
4
n
5
PRO
4
A
GLU
5
n
6
GLU
5
A
SER
6
n
7
SER
6
A
PRO
7
n
8
PRO
7
A
LYS
8
n
9
LYS
8
A
ARG
9
n
10
ARG
9
A
ALA
10
n
11
ALA
10
A
GLU
11
n
12
GLU
11
A
GLU
12
n
13
GLU
12
A
ILE
13
n
14
ILE
13
A
TRP
14
n
15
TRP
14
A
GLN
15
n
16
GLN
15
A
GLN
16
n
17
GLN
16
A
SER
17
n
18
SER
17
A
VAL
18
n
19
VAL
18
A
ILE
19
n
20
ILE
19
A
GLY
20
n
21
GLY
20
A
ASP
21
n
22
ASP
21
A
TYR
22
n
23
TYR
22
A
LEU
23
n
24
LEU
23
A
ALA
24
n
25
ALA
24
A
ARG
25
n
26
ARG
25
A
PHE
26
n
27
PHE
26
A
LYS
27
n
28
LYS
27
A
ASN
28
n
29
ASN
28
A
ASP
29
n
30
ASP
29
A
ARG
30
n
31
ARG
30
A
VAL
31
n
32
VAL
31
A
LYS
32
n
33
LYS
32
A
ALA
33
n
34
ALA
33
A
LEU
34
n
35
LEU
34
A
LYS
35
n
36
LYS
35
A
ALA
36
n
37
ALA
36
A
MET
37
n
38
MET
37
A
GLU
38
n
39
GLU
38
A
MET
39
n
40
MET
39
A
THR
40
n
41
THR
40
A
TRP
41
n
42
TRP
41
A
ASN
42
n
43
ASN
42
A
ASN
43
n
44
ASN
43
A
MET
44
n
45
MET
44
A
GLU
45
n
46
GLU
45
A
LYS
46
n
47
LYS
46
A
LYS
47
n
48
LYS
47
A
GLU
48
n
49
GLU
48
A
LYS
49
n
50
LYS
49
A
LEU
50
n
51
LEU
50
A
MET
51
n
52
MET
51
A
TRP
52
n
53
TRP
52
A
ILE
53
n
54
ILE
53
A
LYS
54
n
55
LYS
54
A
LYS
55
n
56
LYS
55
A
ALA
56
n
57
ALA
56
A
ALA
57
n
58
ALA
57
A
GLU
58
n
59
GLU
58
A
ASP
59
n
60
ASP
59
A
GLN
60
n
61
GLN
60
A
LYS
61
n
62
LYS
61
A
ARG
62
n
63
ARG
62
A
TYR
63
n
64
TYR
63
A
GLU
64
n
65
GLU
64
A
ARG
65
n
66
ARG
65
A
GLU
66
n
67
GLU
66
A
LEU
67
n
68
LEU
67
A
SER
68
n
69
SER
68
A
GLU
69
n
70
GLU
69
A
MET
70
n
71
MET
70
A
ARG
71
n
72
ARG
71
A
ALA
72
n
73
ALA
72
A
PRO
73
n
74
PRO
73
A
PRO
74
n
75
PRO
74
A
ALA
75
n
76
ALA
75
A
ALA
76
n
77
ALA
76
A
THR
77
n
78
THR
77
A
ASN
78
n
79
ASN
78
A
SER
79
n
80
SER
79
A
SER
80
n
81
SER
80
A
LYS
81
n
82
LYS
81
A
LYS
82
n
83
LYS
82
A
LEU
83
n
84
LEU
83
A
GLU
84
n
85
GLU
84
A
n
86
85
A
n
87
86
A
n
88
87
A
n
89
88
A
n
90
89
A
n
91
90
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
O
GLU
84
A
O
GLU
85
1
Y
1
A
MET
0
A
MET
1
1
Y
1
A
HIS
85
A
HIS
86
1
Y
1
A
HIS
86
A
HIS
87
1
Y
1
A
HIS
87
A
HIS
88
1
Y
1
A
HIS
88
A
HIS
89
1
Y
1
A
HIS
89
A
HIS
90
1
Y
1
A
HIS
90
A
HIS
91
1
Y
1
A
CA
SER
80
WRONG HAND
1
A
CA
LEU
83
WRONG HAND
1
A
A
CA
N
SER
SER
79
80
0.69
1
A
A
HD3
HD3
LYS
PRO
2
4
1.19
1
A
A
HB3
HB2
LYS
LEU
81
83
1.27
1
A
A
HB2
HE2
LYS
LYS
81
82
1.27
1
A
A
HA
HB3
ALA
ALA
72
75
1.27
1
A
A
HB1
HZ3
ALA
TRP
10
41
1.28
1
A
A
HB3
H
SER
LYS
80
81
1.29
1
A
A
HB2
HA
LYS
LEU
2
67
1.30
1
A
A
C
H
ALA
ALA
75
76
1.30
1
A
A
HA
HB2
ALA
SER
75
79
1.34
1
A
A
HG2
HA
PRO
GLN
7
60
1.35
1
A
A
OG
HZ3
SER
LYS
80
82
1.44
1
A
A
O
H
SER
ARG
68
71
1.48
1
A
A
O
HB3
PRO
SER
74
80
1.55
1
A
A
O
H
ASP
LYS
29
32
1.56
1
A
A
HB2
N
LYS
LEU
82
83
1.56
1
A
A
HA
N
SER
SER
79
80
1.57
1
A
A
O
HD21
MET
ASN
39
43
1.57
1
A
A
O
HB2
PRO
SER
74
80
1.59
1
A
A
O
CA
PRO
ALA
74
76
1.83
1
A
A
O
N
PRO
ALA
74
76
1.90
1
A
A
O
CB
PRO
SER
74
80
1.96
1
A
A
C
O
PRO
ALA
74
76
1.97
1
A
A
O
O
ASN
SER
78
80
1.98
1
A
A
C
N
PRO
ALA
74
76
2.02
1
A
A
O
CD2
LYS
LEU
81
83
2.07
1
A
A
O
CB
ALA
ALA
72
76
2.13
1
A
A
CB
NZ
SER
LYS
80
82
2.15
1
A
ALA
75
-13.82
1
A
THR
77
-17.48
1
A
ASN
78
12.13
1
A
SER
79
33.24
1
A
A
THR
ASN
77
78
149.23
1
A
A
SER
SER
79
80
-129.62
1
A
ARG
62
0.092
SIDE CHAIN
1
A
ARG
65
0.243
SIDE CHAIN
1
A
ASN
78
0.135
SIDE CHAIN
1
A
A
C
N
GLY
LYS
1
2
1.17
1
A
A
C
N
ARG
ALA
71
72
1.16
1
A
A
C
N
PRO
ALA
74
75
1.70
1
A
A
C
N
SER
SER
79
80
1.64
1
A
A
C
N
LYS
LYS
81
82
1.73
1
A
A
C
N
LYS
LEU
82
83
1.99
1
-17.47
1.80
110.60
93.13
A
A
A
N
CA
CB
LYS
LYS
LYS
2
2
2
N
1
-21.73
2.60
111.60
89.87
A
A
A
CB
CG
CD
LYS
LYS
LYS
2
2
2
N
1
-26.85
1.90
110.20
83.35
A
A
A
CB
CA
C
LEU
LEU
LEU
3
3
3
N
1
-19.13
2.00
110.40
91.27
A
A
A
N
CA
CB
LEU
LEU
LEU
3
3
3
N
1
-11.14
1.70
111.00
99.86
A
A
A
CB
CG
CD2
LEU
LEU
LEU
3
3
3
N
1
12.28
1.80
110.60
122.88
A
A
A
N
CA
CB
ASN
ASN
ASN
43
43
43
N
1
14.01
2.20
113.40
127.41
A
A
A
CA
CB
CG
ASN
ASN
ASN
43
43
43
N
1
-9.95
1.40
123.60
113.65
A
A
A
CD
NE
CZ
ARG
ARG
ARG
62
62
62
N
1
-7.20
0.50
120.30
113.10
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
62
62
62
N
1
3.48
0.50
120.30
123.78
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
62
62
62
N
1
-10.93
1.80
110.60
99.67
A
A
A
N
CA
CB
TYR
TYR
TYR
63
63
63
N
1
-6.45
0.60
121.00
114.55
A
A
A
CB
CG
CD1
TYR
TYR
TYR
63
63
63
N
1
-11.82
1.40
123.60
111.78
A
A
A
CD
NE
CZ
ARG
ARG
ARG
65
65
65
N
1
7.47
1.10
119.40
126.87
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
65
65
65
N
1
-5.11
0.50
120.30
115.19
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
65
65
65
N
1
15.27
2.30
115.30
130.57
A
A
A
CA
CB
CG
LEU
LEU
LEU
67
67
67
N
1
-13.20
1.70
113.30
100.10
A
A
A
CA
CB
CG
MET
MET
MET
70
70
70
N
1
-17.02
1.60
100.20
83.18
A
A
A
CG
SD
CE
MET
MET
MET
70
70
70
N
1
-16.64
2.20
113.40
96.76
A
A
A
CA
CB
CG
ARG
ARG
ARG
71
71
71
N
1
9.11
1.10
119.40
128.51
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
71
71
71
N
1
-6.40
0.50
120.30
113.90
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
71
71
71
N
1
21.55
1.50
110.10
131.65
A
A
A
CB
CA
C
ALA
ALA
ALA
72
72
72
N
1
-15.19
1.40
110.10
94.91
A
A
A
N
CA
CB
ALA
ALA
ALA
72
72
72
N
1
-16.06
2.60
112.10
96.04
A
A
A
N
CA
C
PRO
PRO
PRO
73
73
73
N
1
21.44
2.10
111.70
133.14
A
A
A
CB
CA
C
PRO
PRO
PRO
74
74
74
N
1
-17.62
1.20
103.30
85.68
A
A
A
N
CA
CB
PRO
PRO
PRO
74
74
74
N
1
18.59
2.40
120.20
138.79
A
A
A
CA
C
O
PRO
PRO
PRO
74
74
74
N
1
-20.54
2.20
117.20
96.66
A
A
A
CA
C
N
ALA
ALA
ALA
75
75
76
Y
1
37.42
2.50
121.70
159.12
A
A
A
C
N
CA
ALA
ALA
ALA
75
76
76
Y
1
18.68
2.20
117.20
135.88
A
A
A
CA
C
N
ALA
ALA
THR
76
76
77
Y
1
-19.69
1.60
122.70
103.01
A
A
A
O
C
N
ALA
ALA
THR
76
76
77
Y
1
-11.99
1.40
112.40
100.41
A
A
A
CA
CB
CG2
THR
THR
THR
77
77
77
N
1
26.82
2.70
111.00
137.82
A
A
A
N
CA
C
THR
THR
THR
77
77
77
N
1
-14.82
2.20
117.20
102.38
A
A
A
CA
C
N
THR
THR
ASN
77
77
78
Y
1
-25.19
2.00
110.40
85.21
A
A
A
CB
CA
C
ASN
ASN
ASN
78
78
78
N
1
28.22
1.80
110.60
138.82
A
A
A
N
CA
CB
ASN
ASN
ASN
78
78
78
N
1
-21.30
1.90
110.10
88.80
A
A
A
CB
CA
C
SER
SER
SER
79
79
79
N
1
23.23
1.50
110.50
133.73
A
A
A
N
CA
CB
SER
SER
SER
79
79
79
N
1
20.87
2.70
111.20
132.07
A
A
A
CA
CB
OG
SER
SER
SER
79
79
79
N
1
-94.19
2.20
117.20
23.01
A
A
A
CA
C
N
SER
SER
SER
79
79
80
Y
1
48.01
2.50
121.70
169.71
A
A
A
C
N
CA
SER
SER
SER
79
80
80
Y
1
21.56
1.90
110.10
131.66
A
A
A
CB
CA
C
SER
SER
SER
80
80
80
N
1
37.85
2.70
111.20
149.05
A
A
A
CA
CB
OG
SER
SER
SER
80
80
80
N
1
-40.29
2.70
111.00
70.71
A
A
A
N
CA
C
SER
SER
SER
80
80
80
N
1
-22.78
2.20
117.20
94.42
A
A
A
CA
C
N
SER
SER
LYS
80
80
81
Y
1
31.54
1.60
122.70
154.24
A
A
A
O
C
N
SER
SER
LYS
80
80
81
Y
1
25.47
2.50
121.70
147.17
A
A
A
C
N
CA
SER
LYS
LYS
80
81
81
Y
1
15.92
2.20
113.40
129.32
A
A
A
CA
CB
CG
LYS
LYS
LYS
81
81
81
N
1
23.46
2.60
111.60
135.06
A
A
A
CB
CG
CD
LYS
LYS
LYS
81
81
81
N
1
31.65
3.00
111.90
143.55
A
A
A
CG
CD
CE
LYS
LYS
LYS
81
81
81
N
1
-48.56
2.00
110.40
61.84
A
A
A
CB
CA
C
LYS
LYS
LYS
82
82
82
N
1
-43.55
1.80
110.60
67.05
A
A
A
N
CA
CB
LYS
LYS
LYS
82
82
82
N
1
-24.11
3.00
111.90
87.79
A
A
A
CG
CD
CE
LYS
LYS
LYS
82
82
82
N
1
-14.67
2.10
120.10
105.43
A
A
A
CA
C
O
LYS
LYS
LYS
82
82
82
N
1
19.22
1.90
110.20
129.42
A
A
A
CB
CA
C
LEU
LEU
LEU
83
83
83
N
1
17.12
2.00
110.40
127.52
A
A
A
N
CA
CB
LEU
LEU
LEU
83
83
83
N
1
-15.07
1.70
111.00
95.93
A
A
A
CB
CG
CD2
LEU
LEU
LEU
83
83
83
N
1
25.09
2.10
120.10
145.19
A
A
A
CA
C
O
LEU
LEU
LEU
83
83
83
N
1
-44.43
2.20
117.20
72.77
A
A
A
CA
C
N
LEU
LEU
GLU
83
83
84
Y
1
17.02
1.60
122.70
139.72
A
A
A
O
C
N
LEU
LEU
GLU
83
83
84
Y
1
20.81
2.00
110.40
131.21
A
A
A
CB
CA
C
GLU
GLU
GLU
84
84
84
N
1
-35.19
1.80
110.60
75.41
A
A
A
N
CA
CB
GLU
GLU
GLU
84
84
84
N
1
A
A
C
N
GLY
LYS
1
2
-0.162
0.023
1.336
1.174
Y
1
A
A
CA
CB
LYS
LYS
2
2
-0.145
0.022
1.535
1.390
N
1
A
A
CD
N
PRO
PRO
4
4
-0.132
0.014
1.474
1.342
N
1
A
A
CA
C
PRO
PRO
4
4
-0.177
0.020
1.524
1.347
N
1
A
A
N
CA
GLU
GLU
5
5
-0.191
0.020
1.459
1.268
N
1
A
A
CA
CB
GLU
GLU
5
5
-0.144
0.022
1.535
1.391
N
1
A
A
CB
CG
LYS
LYS
61
61
-0.177
0.027
1.521
1.344
N
1
A
A
N
CA
TYR
TYR
63
63
-0.182
0.020
1.459
1.277
N
1
A
A
CB
CG
TYR
TYR
63
63
-0.178
0.015
1.512
1.334
N
1
A
A
CG
CD1
TYR
TYR
63
63
-0.085
0.013
1.387
1.302
N
1
A
A
CG
CD
ARG
ARG
65
65
-0.162
0.025
1.515
1.353
N
1
A
A
CD
NE
ARG
ARG
65
65
-0.138
0.017
1.460
1.322
N
1
A
A
NE
CZ
ARG
ARG
65
65
-0.092
0.013
1.326
1.234
N
1
A
A
N
CA
ARG
ARG
71
71
-0.161
0.020
1.459
1.298
N
1
A
A
CA
CB
ARG
ARG
71
71
-0.291
0.022
1.535
1.244
N
1
A
A
CB
CG
ARG
ARG
71
71
-0.245
0.027
1.521
1.276
N
1
A
A
CG
CD
ARG
ARG
71
71
-0.266
0.025
1.515
1.249
N
1
A
A
CD
NE
ARG
ARG
71
71
-0.194
0.017
1.460
1.266
N
1
A
A
NE
CZ
ARG
ARG
71
71
-0.138
0.013
1.326
1.188
N
1
A
A
CA
C
ARG
ARG
71
71
-0.222
0.026
1.525
1.303
N
1
A
A
C
N
ARG
ALA
71
72
-0.176
0.023
1.336
1.160
Y
1
A
A
N
CA
ALA
ALA
72
72
-0.330
0.020
1.459
1.129
N
1
A
A
C
N
ALA
PRO
72
73
0.120
0.019
1.338
1.458
Y
1
A
A
CA
CB
PRO
PRO
74
74
0.129
0.020
1.531
1.660
N
1
A
A
CD
N
PRO
PRO
74
74
0.165
0.014
1.474
1.639
N
1
A
A
CA
C
PRO
PRO
74
74
0.317
0.020
1.524
1.841
N
1
A
A
C
O
PRO
PRO
74
74
1.018
0.020
1.228
2.246
N
1
A
A
N
CA
ALA
ALA
75
75
0.231
0.020
1.459
1.690
N
1
A
A
CA
CB
ALA
ALA
75
75
-0.134
0.021
1.520
1.386
N
1
A
A
CA
C
ALA
ALA
75
75
0.340
0.026
1.525
1.865
N
1
A
A
N
CA
ALA
ALA
76
76
0.808
0.020
1.459
2.267
N
1
A
A
CA
CB
ALA
ALA
76
76
-0.321
0.021
1.520
1.199
N
1
A
A
CA
C
ALA
ALA
76
76
0.327
0.026
1.525
1.852
N
1
A
A
N
CA
THR
THR
77
77
0.188
0.020
1.459
1.647
N
1
A
A
CB
CG2
THR
THR
77
77
-0.246
0.033
1.519
1.273
N
1
A
A
CG
OD1
ASN
ASN
78
78
0.202
0.022
1.235
1.437
N
1
A
A
CA
C
ASN
ASN
78
78
0.300
0.026
1.525
1.825
N
1
A
A
N
CA
SER
SER
79
79
0.666
0.020
1.459
2.125
N
1
A
A
CA
CB
SER
SER
79
79
0.815
0.015
1.525
2.340
N
1
A
A
CB
OG
SER
SER
79
79
0.271
0.013
1.418
1.689
N
1
A
A
CA
C
SER
SER
79
79
-0.264
0.026
1.525
1.261
N
1
A
A
C
O
SER
SER
79
79
0.430
0.019
1.229
1.659
N
1
A
A
C
N
SER
SER
79
80
0.301
0.023
1.336
1.637
Y
1
A
A
N
CA
SER
SER
80
80
0.349
0.020
1.459
1.808
N
1
A
A
CB
OG
SER
SER
80
80
0.171
0.013
1.418
1.589
N
1
A
A
CA
C
SER
SER
80
80
-0.503
0.026
1.525
1.022
N
1
A
A
C
O
SER
SER
80
80
0.384
0.019
1.229
1.613
N
1
A
A
CA
CB
LYS
LYS
81
81
0.198
0.022
1.535
1.733
N
1
A
A
CD
CE
LYS
LYS
81
81
-0.167
0.025
1.508
1.341
N
1
A
A
CA
C
LYS
LYS
81
81
0.424
0.026
1.525
1.949
N
1
A
A
N
CA
LYS
LYS
82
82
0.222
0.020
1.459
1.681
N
1
A
A
CA
CB
LYS
LYS
82
82
0.155
0.022
1.535
1.690
N
1
A
A
CB
CG
LYS
LYS
82
82
0.269
0.027
1.521
1.790
N
1
A
A
CD
CE
LYS
LYS
82
82
-0.388
0.025
1.508
1.120
N
1
A
A
C
O
LYS
LYS
82
82
0.287
0.019
1.229
1.516
N
1
A
A
N
CA
LEU
LEU
83
83
0.472
0.020
1.459
1.931
N
1
A
A
CA
CB
LEU
LEU
83
83
0.309
0.023
1.533
1.842
N
1
A
A
CA
C
LEU
LEU
83
83
0.301
0.026
1.525
1.826
N
1
A
A
N
CA
GLU
GLU
84
84
-0.336
0.020
1.459
1.123
N
1
A
A
CA
CB
GLU
GLU
84
84
0.340
0.022
1.535
1.875
N
1
A
A
CB
CG
GLU
GLU
84
84
0.141
0.019
1.517
1.658
N
1
A
LYS
2
-100.03
-151.25
1
A
PRO
4
-44.80
-75.13
1
A
GLU
5
-131.93
-110.94
1
A
SER
6
128.08
72.35
1
A
PRO
7
-53.64
-160.07
1
A
LYS
8
-155.28
27.75
1
A
ARG
9
49.90
-90.60
1
A
ALA
10
-70.70
-80.23
1
A
ILE
19
-35.66
-36.49
1
A
LYS
27
61.94
60.40
1
A
ASN
28
107.58
35.43
1
A
ARG
30
-18.92
-49.46
1
A
GLU
45
88.91
-166.13
1
A
LYS
49
-33.60
-72.81
1
A
LEU
67
-67.32
-79.59
1
A
SER
68
-28.39
-56.71
1
A
GLU
69
-23.53
-47.46
1
A
ALA
76
-126.50
-163.18
1
A
ASN
78
164.46
56.63
1
A
SER
79
-120.95
-105.15
1
A
SER
80
175.18
95.29
minimized average
Solution structure of HMG box 5 in human upstream binding factor
1
N
N
A
ARG
9
A
ARG
10
HELX_P
A
LYS
27
A
LYS
28
1
1
19
A
ASP
29
A
ASP
30
HELX_P
A
ASN
43
A
ASN
44
1
2
15
A
MET
44
A
MET
45
HELX_P
A
LYS
46
A
LYS
47
5
3
3
A
LYS
47
A
LYS
48
HELX_P
A
ARG
71
A
ARG
72
1
4
25
DNA BINDING PROTEIN
hUBF, HMG box 5, DNA binding domain, DNA BINDING PROTEIN
UBF1_HUMAN
UNP
1
478
P17480
RGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNS
SKK
479
560
1L8Z
1
82
P17480
A
1
2
83
1
initiating methionine
MET
0
1L8Z
A
P17480
UNP
1
1
expression tag
LEU
83
1L8Z
A
P17480
UNP
84
1
expression tag
GLU
84
1L8Z
A
P17480
UNP
85
1
expression tag
HIS
85
1L8Z
A
P17480
UNP
86
1
expression tag
HIS
86
1L8Z
A
P17480
UNP
87
1
expression tag
HIS
87
1L8Z
A
P17480
UNP
88
1
expression tag
HIS
88
1L8Z
A
P17480
UNP
89
1
expression tag
HIS
89
1L8Z
A
P17480
UNP
90
1
expression tag
HIS
90
1L8Z
A
P17480
UNP
91