0.016313 0.009418 0.000000 0.000000 0.018837 0.000000 0.000000 0.000000 0.010395 0.00000 0.00000 0.00000 SG SEO 97 IS BONDED TO SG CYS 97. RESIDUES 162 - 164 IN WILD-TYPE AND ALL MUTANT LYSOZYMES ARE EXTREMELY MOBILE. THUS THE COORDINATES FOR THESE RESIDUES ARE VERY UNRELIABLE. Pjura, P. Mcintosh, L.P. Wozniak, J.A. Matthews, B.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 61.300 61.300 96.200 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O S 78.133 BETA-MERCAPTOETHANOL non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 15 401 412 10.1002/prot.340150407 8460110 Perturbation of Trp 138 in T4 lysozyme by mutations at Gln 105 used to correlate changes in structure, stability, solvation, and spectroscopic properties. 1993 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 18663.453 T4 LYSOZYME 3.2.1.17 1 man polymer 78.133 BETA-MERCAPTOETHANOL 1 syn non-polymer 18.015 water 165 nat water no no MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFEMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFEMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n T4-like viruses Enterobacteria phage T4 sensu lato sample 10665 Enterobacteria phage T4 PLASMID M13 2.80 56.00 repository Initial release Version format compliance Version format compliance 1 0 1993-10-31 1 1 2008-03-24 1 2 2011-07-13 SHEET THERE ARE SEVERAL SUBTLE ASPECTS OF THE SECONDARY STRUCTURE OF THIS MOLECULE WHICH CANNOT CONVENIENTLY BE REPRESENTED IN THE HELIX AND SHEET RECORDS BELOW. THESE ASPECTS INFLUENCE THE REPRESENTATION OF HELIX 6 AND STRAND 3 OF SHEET *S1*. THE PAPER J.MOL.BIOL., V. 118, P. 81, 1978 SHOULD BE CONSULTED FOR THESE SUBTLETIES. Y 1992-07-13 REL REL BME BETA-MERCAPTOETHANOL HOH water SEO 97 2 BME BME 165 A HOH 166 3 HOH HOH 166 A HOH 167 3 HOH HOH 167 A HOH 168 3 HOH HOH 168 A HOH 169 3 HOH HOH 169 A HOH 170 3 HOH HOH 170 A HOH 171 3 HOH HOH 171 A HOH 172 3 HOH HOH 172 A HOH 173 3 HOH HOH 173 A HOH 175 3 HOH HOH 175 A HOH 176 3 HOH HOH 176 A HOH 178 3 HOH HOH 178 A HOH 179 3 HOH HOH 179 A HOH 180 3 HOH HOH 180 A HOH 181 3 HOH HOH 181 A HOH 182 3 HOH HOH 182 A HOH 185 3 HOH HOH 185 A HOH 186 3 HOH HOH 186 A HOH 187 3 HOH HOH 187 A HOH 188 3 HOH HOH 188 A HOH 190 3 HOH HOH 190 A HOH 191 3 HOH HOH 191 A HOH 192 3 HOH HOH 192 A HOH 194 3 HOH HOH 194 A HOH 195 3 HOH HOH 195 A HOH 197 3 HOH HOH 197 A HOH 201 3 HOH HOH 201 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 214 3 HOH HOH 214 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 227 3 HOH HOH 227 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 235 3 HOH HOH 235 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 250 3 HOH HOH 250 A HOH 252 3 HOH HOH 252 A HOH 256 3 HOH HOH 256 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 269 3 HOH HOH 269 A HOH 270 3 HOH HOH 270 A HOH 273 3 HOH HOH 273 A HOH 274 3 HOH HOH 274 A HOH 277 3 HOH HOH 277 A HOH 280 3 HOH HOH 280 A HOH 282 3 HOH HOH 282 A HOH 287 3 HOH HOH 287 A HOH 295 3 HOH HOH 295 A HOH 297 3 HOH HOH 297 A HOH 298 3 HOH HOH 298 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 324 3 HOH HOH 324 A HOH 326 3 HOH HOH 326 A HOH 327 3 HOH HOH 327 A HOH 338 3 HOH HOH 338 A HOH 340 3 HOH HOH 340 A HOH 351 3 HOH HOH 351 A HOH 352 3 HOH HOH 352 A HOH 353 3 HOH HOH 353 A HOH 355 3 HOH HOH 355 A HOH 356 3 HOH HOH 356 A HOH 361 3 HOH HOH 361 A HOH 363 3 HOH HOH 363 A HOH 364 3 HOH HOH 364 A HOH 401 3 HOH HOH 401 A HOH 402 3 HOH HOH 402 A HOH 404 3 HOH HOH 404 A HOH 405 3 HOH HOH 405 A HOH 407 3 HOH HOH 407 A HOH 411 3 HOH HOH 411 A HOH 414 3 HOH HOH 414 A HOH 415 3 HOH HOH 415 A HOH 417 3 HOH HOH 417 A HOH 418 3 HOH HOH 418 A HOH 419 3 HOH HOH 419 A HOH 420 3 HOH HOH 420 A HOH 517 3 HOH HOH 517 A HOH 518 3 HOH HOH 518 A HOH 519 3 HOH HOH 519 A HOH 520 3 HOH HOH 520 A HOH 523 3 HOH HOH 523 A HOH 524 3 HOH HOH 524 A HOH 525 3 HOH HOH 525 A HOH 526 3 HOH HOH 526 A HOH 527 3 HOH HOH 527 A HOH 528 3 HOH HOH 528 A HOH 529 3 HOH HOH 529 A HOH 530 3 HOH HOH 530 A HOH 531 3 HOH HOH 531 A HOH 532 3 HOH HOH 532 A HOH 533 3 HOH HOH 533 A HOH 534 3 HOH HOH 534 A HOH 537 3 HOH HOH 537 A HOH 538 3 HOH HOH 538 A HOH 540 3 HOH HOH 540 A HOH 541 3 HOH HOH 541 A HOH 542 3 HOH HOH 542 A HOH 544 3 HOH HOH 544 A HOH 545 3 HOH HOH 545 A HOH 546 3 HOH HOH 546 A HOH 550 3 HOH HOH 550 A HOH 551 3 HOH HOH 551 A HOH 552 3 HOH HOH 552 A HOH 553 3 HOH HOH 553 A HOH 554 3 HOH HOH 554 A HOH 555 3 HOH HOH 555 A HOH 556 3 HOH HOH 556 A HOH 557 3 HOH HOH 557 A HOH 558 3 HOH HOH 558 A HOH 559 3 HOH HOH 559 A HOH 561 3 HOH HOH 561 A HOH 562 3 HOH HOH 562 A HOH 564 3 HOH HOH 564 A HOH 565 3 HOH HOH 565 A HOH 566 3 HOH HOH 566 A HOH 567 3 HOH HOH 567 A HOH 568 3 HOH HOH 568 A HOH 569 3 HOH HOH 569 A HOH 570 3 HOH HOH 570 A HOH 571 3 HOH HOH 571 A HOH 572 3 HOH HOH 572 A HOH 573 3 HOH HOH 573 A HOH 576 3 HOH HOH 576 A HOH 577 3 HOH HOH 577 A HOH 578 3 HOH HOH 578 A HOH 582 3 HOH HOH 582 A HOH 583 3 HOH HOH 583 A HOH 584 3 HOH HOH 584 A HOH 587 3 HOH HOH 587 A HOH 589 3 HOH HOH 589 A HOH 590 3 HOH HOH 590 A HOH 591 3 HOH HOH 591 A HOH 592 3 HOH HOH 592 A MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A MET 6 n 6 MET 6 A LEU 7 n 7 LEU 7 A ARG 8 n 8 ARG 8 A ILE 9 n 9 ILE 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A ILE 17 n 17 ILE 17 A TYR 18 n 18 TYR 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A THR 21 n 21 THR 21 A GLU 22 n 22 GLU 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A TYR 25 n 25 TYR 25 A THR 26 n 26 THR 26 A ILE 27 n 27 ILE 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A HIS 31 n 31 HIS 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A LYS 35 n 35 LYS 35 A SER 36 n 36 SER 36 A PRO 37 n 37 PRO 37 A SER 38 n 38 SER 38 A LEU 39 n 39 LEU 39 A ASN 40 n 40 ASN 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A SER 44 n 44 SER 44 A GLU 45 n 45 GLU 45 A LEU 46 n 46 LEU 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A ASN 53 n 53 ASN 53 A CYS 54 n 54 CYS 54 A ASN 55 n 55 ASN 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A THR 59 n 59 THR 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ALA 63 n 63 ALA 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A ASN 68 n 68 ASN 68 A GLN 69 n 69 GLN 69 A ASP 70 n 70 ASP 70 A VAL 71 n 71 VAL 71 A ASP 72 n 72 ASP 72 A ALA 73 n 73 ALA 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A ARG 76 n 76 ARG 76 A GLY 77 n 77 GLY 77 A ILE 78 n 78 ILE 78 A LEU 79 n 79 LEU 79 A ARG 80 n 80 ARG 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A LYS 83 n 83 LYS 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A PRO 86 n 86 PRO 86 A VAL 87 n 87 VAL 87 A TYR 88 n 88 TYR 88 A ASP 89 n 89 ASP 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A ASP 92 n 92 ASP 92 A ALA 93 n 93 ALA 93 A VAL 94 n 94 VAL 94 A ARG 95 n 95 ARG 95 A ARG 96 n 96 ARG 96 A CYS 97 n 97 CYS 97 A ALA 98 n 98 ALA 98 A LEU 99 n 99 LEU 99 A ILE 100 n 100 ILE 100 A ASN 101 n 101 ASN 101 A MET 102 n 102 MET 102 A VAL 103 n 103 VAL 103 A PHE 104 n 104 PHE 104 A GLU 105 n 105 GLU 105 A MET 106 n 106 MET 106 A GLY 107 n 107 GLY 107 A GLU 108 n 108 GLU 108 A THR 109 n 109 THR 109 A GLY 110 n 110 GLY 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A PHE 114 n 114 PHE 114 A THR 115 n 115 THR 115 A ASN 116 n 116 ASN 116 A SER 117 n 117 SER 117 A LEU 118 n 118 LEU 118 A ARG 119 n 119 ARG 119 A MET 120 n 120 MET 120 A LEU 121 n 121 LEU 121 A GLN 122 n 122 GLN 122 A GLN 123 n 123 GLN 123 A LYS 124 n 124 LYS 124 A ARG 125 n 125 ARG 125 A TRP 126 n 126 TRP 126 A ASP 127 n 127 ASP 127 A GLU 128 n 128 GLU 128 A ALA 129 n 129 ALA 129 A ALA 130 n 130 ALA 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A LYS 135 n 135 LYS 135 A SER 136 n 136 SER 136 A ARG 137 n 137 ARG 137 A TRP 138 n 138 TRP 138 A TYR 139 n 139 TYR 139 A ASN 140 n 140 ASN 140 A GLN 141 n 141 GLN 141 A THR 142 n 142 THR 142 A PRO 143 n 143 PRO 143 A ASN 144 n 144 ASN 144 A ARG 145 n 145 ARG 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A ARG 148 n 148 ARG 148 A VAL 149 n 149 VAL 149 A ILE 150 n 150 ILE 150 A THR 151 n 151 THR 151 A THR 152 n 152 THR 152 A PHE 153 n 153 PHE 153 A ARG 154 n 154 ARG 154 A THR 155 n 155 THR 155 A GLY 156 n 156 GLY 156 A THR 157 n 157 THR 157 A TRP 158 n 158 TRP 158 A ASP 159 n 159 ASP 159 A ALA 160 n 160 ALA 160 A TYR 161 n 161 TYR 161 A LYS 162 n 162 LYS 162 A ASN 163 n 163 ASN 163 A LEU 164 n 164 LEU 164 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 18 A N TYR 18 A O THR 26 A O THR 26 A O ILE 27 A O ILE 27 A N HIS 31 A N HIS 31 1 3.21 0.50 120.30 123.51 A A A NE CZ NH1 ARG ARG ARG 8 8 8 N 1 7.00 0.90 118.30 125.30 A A A CB CG OD1 ASP ASP ASP 47 47 47 N 1 -7.41 0.90 118.30 110.89 A A A CB CG OD2 ASP ASP ASP 47 47 47 N 1 -6.23 0.90 118.30 112.07 A A A CB CG OD1 ASP ASP ASP 72 72 72 N 1 5.85 0.90 118.30 124.15 A A A CB CG OD2 ASP ASP ASP 72 72 72 N 1 14.18 2.00 110.40 124.58 A A A CB CA C MET MET MET 106 106 106 N 1 11.09 1.70 113.30 124.39 A A A CA CB CG MET MET MET 106 106 106 N 1 9.46 1.40 123.60 133.06 A A A CD NE CZ ARG ARG ARG 119 119 119 N 1 6.36 0.90 118.30 124.66 A A A CB CG OD1 ASP ASP ASP 127 127 127 N 1 -5.76 0.90 118.30 112.54 A A A CB CG OD2 ASP ASP ASP 127 127 127 N 1 4.71 0.50 120.30 125.01 A A A NE CZ NH1 ARG ARG ARG 154 154 154 N 1 A A CD OE2 GLU GLU 128 128 0.067 0.011 1.252 1.319 N 1 A A O O HOH HOH 240 240 1.52 1_555 5_555 1 A A O O HOH HOH 520 520 2.08 1_555 5_555 1 A ASP 20 -70.39 -168.54 1 A ILE 29 -106.81 73.61 RESIDUES 162 - 164 IN WILD-TYPE AND ALL MUTANT LYSOZYMES ARE EXTREMELY MOBILE. THUS THE COORDINATES FOR THESE RESIDUES ARE VERY UNRELIABLE. THE SIDE CHAINS OF RESIDUES 14, 55, 80, AND 119 HAVE WEAK DENSITY AND PROBABLY ARE IN MULTIPLE CONFORMATIONS. THE SIDE CHAIN OF RESIDUE 16 IS VERY POOR AND THE MODELED SIDE CHAIN SHOULD NOT BE CONSIDERED RELIABLE. 0.1620000 1.8 1 1.8 165 1478 4 0 1309 0.015 2.4 refinement TNT LYSOZYME (E.C.3.2.1.17) MUTANT WITH GLN 105 REPLACED BY GLU (Q105E) PERTURBATION OF TRP 138 IN T4 LYSOZYME BY MUTATIONS AT GLN 105 USED TO CORRELATE CHANGES IN STRUCTURE, STABILITY, SOLVATION, AND SPECTROSCOPIC PROPERTIES 1 N N 2 N N 3 N N A ASN 2 A ASN 2 HELX_P A GLY 12 A GLY 12 1 1 11 A SER 38 A SER 38 HELX_P A GLY 51 A GLY 51 1 2 14 A THR 59 A THR 59 HELX_P A ARG 80 A ARG 80 1 3 22 A LYS 83 A LYS 83 HELX_P A LEU 91 A LEU 91 1 4 9 A ASP 92 A ASP 92 HELX_P A GLY 107 A GLY 107 1 5 16 A MET 106 A MET 106 HELX_P A GLY 113 A GLY 113 1 6 8 A PHE 114 A PHE 114 HELX_P A GLN 123 A GLN 123 1 7 10 A ARG 125 A ARG 125 HELX_P A ALA 134 A ALA 134 1 8 10 A SER 136 A SER 136 HELX_P A THR 142 A THR 142 1 9 7 A THR 142 A THR 142 HELX_P A GLY 156 A GLY 156 1 10 15 A TRP 158 A TRP 158 HELX_P A LYS 162 A LYS 162 5 11 5 covale 2.064 A CYS 97 A SG CYS 97 1_555 A BME 165 B S2 BME 1_555 HYDROLASE(O-GLYCOSYL) HYDROLASE(O-GLYCOSYL) LYS_BPT4 UNP 1 1 P00720 MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL 1 164 1L98 1 164 P00720 A 1 1 164 1 GLN CONFLICT GLU 105 1L98 A P00720 UNP 105 105 3 anti-parallel anti-parallel A ARG 14 A ARG 14 A LYS 19 A LYS 19 A TYR 25 A TYR 25 A GLY 28 A GLY 28 A HIS 31 A HIS 31 A THR 34 A THR 34 BINDING SITE FOR RESIDUE BME A 165 Software 7 A ILE 3 A ILE 3 7 1_555 A ASN 68 A ASN 68 7 5_555 A ALA 93 A ALA 93 7 1_555 A ARG 96 A ARG 96 7 1_555 A CYS 97 A CYS 97 7 1_555 A ILE 100 A ILE 100 7 1_555 A HOH 317 C HOH 7 1_555 154 P 32 2 1