0.010336 0.000000 0.000000 0.000000 0.010336 0.000000 0.000000 0.000000 0.006698 0.00000 0.00000 0.00000 Okada, T. Fujiyoshi, Y. Silow, M. Navarro, J. Landau, E.M. Shichida, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 96.745 96.745 149.300 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C15 H30 O6 306.395 n nonyl beta-D-glucopyranoside Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside D-saccharide C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking Hg 2 200.590 MERCURY (II) ION non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C7 H16 O3 148.200 HEPTANE-1,2,3-TRIOL non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C16 H32 O2 256.424 PALMITIC ACID non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C20 H28 O 284.436 RETINAL non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N C N 2 N O N 3 N C N 4 N H N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 R C N 82 R C N 83 S C N 84 S C N 85 R C N 86 N C N 87 N C N 88 N C N 89 N C N 90 N C N 91 N C N 92 N C N 93 N C N 94 N C N 95 N C N 96 N O N 97 N O N 98 N O N 99 N O N 100 N O N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N N N 133 R C N 134 N C N 135 N O N 136 N C N 137 N S N 138 N O N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 S C N 148 N C N 149 N O N 150 N C N 151 N C N 152 N C N 153 N O N 154 N N N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N O N 174 N O N 175 N O N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 N C N 187 N C N 188 N O N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N HG N 196 N N N 197 S C N 198 N C N 199 N O N 200 N C Y 201 N C Y 202 N N Y 203 N C Y 204 N C Y 205 N N N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N O N 218 N H N 219 N H N 220 N C N 221 N O N 222 R C N 223 N O N 224 R C N 225 N O N 226 N C N 227 N C N 228 N C N 229 N C N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N N N 247 S C N 248 N C N 249 N O N 250 S C N 251 N C N 252 N C N 253 N C N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N C N 298 N N N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 S C N 316 S C N 317 S C N 318 S C N 319 R C N 320 N C N 321 N O N 322 N O N 323 N O N 324 N O N 325 N O N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C N 344 N C N 345 N S N 346 N C N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 R C N 360 R C N 361 R C N 362 S C N 363 R C N 364 N C N 365 N C N 366 N C N 367 N N N 368 N O N 369 N O N 370 N O N 371 N O N 372 N O N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 N C Y 394 N C Y 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N C N 413 N O N 414 N O N 415 N C N 416 N C N 417 N C N 418 N C N 419 N C N 420 N C N 421 N C N 422 N C N 423 N C N 424 N C N 425 N C N 426 N C N 427 N C N 428 N C N 429 N C N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N N N 463 S C N 464 N C N 465 N O N 466 N C N 467 N C N 468 N C N 469 N O N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N C N 480 N C N 481 N C N 482 N C N 483 N C N 484 N C N 485 N C N 486 N C N 487 N C N 488 N C N 489 N C N 490 N C N 491 N C N 492 N C N 493 N C N 494 N O N 495 N C N 496 N C N 497 N C N 498 N C N 499 N C N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N N N 529 S C N 530 N C N 531 N O N 532 N C N 533 N O N 534 N O N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N N N 543 S C N 544 N C N 545 N O N 546 R C N 547 N O N 548 N C N 549 N O N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N N N 560 S C N 561 N C N 562 N O N 563 N C Y 564 N C Y 565 N C Y 566 N C Y 567 N N Y 568 N C Y 569 N C Y 570 N C Y 571 N C Y 572 N C N 573 N O N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N H N 581 N H N 582 N H N 583 N H N 584 N H N 585 N H N 586 N N N 587 S C N 588 N C N 589 N O N 590 N C Y 591 N C Y 592 N C Y 593 N C Y 594 N C Y 595 N C Y 596 N C N 597 N O N 598 N O N 599 N H N 600 N H N 601 N H N 602 N H N 603 N H N 604 N H N 605 N H N 606 N H N 607 N H N 608 N H N 609 N H N 610 N N N 611 S C N 612 N C N 613 N O N 614 N C N 615 N C N 616 N C N 617 N O N 618 N H N 619 N H N 620 N H N 621 N H N 622 N H N 623 N H N 624 N H N 625 N H N 626 N H N 627 N H N 628 N H N 629 N ZN N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing Y 197 N sing Y 198 N doub Y 199 N doub N 200 N sing Y 201 N sing N 202 N sing Y 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing Y 384 N doub Y 385 N sing Y 386 N sing N 387 N sing Y 388 N doub N 389 N sing Y 390 N doub N 391 N sing Y 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N doub N 476 N sing N 477 N sing N 478 E doub N 479 N sing N 480 N sing N 481 N sing N 482 E doub N 483 N sing N 484 N sing N 485 N sing N 486 E doub N 487 N sing N 488 N sing N 489 N sing N 490 E doub N 491 N sing N 492 N sing N 493 N sing N 494 N doub N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N doub N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N doub N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N doub N 547 N sing N 548 N sing N 549 N sing N 550 N sing Y 551 N doub Y 552 N sing Y 553 N sing N 554 N sing Y 555 N doub Y 556 N sing Y 557 N sing N 558 N sing Y 559 N sing Y 560 N doub N 561 N sing Y 562 N doub N 563 N sing Y 564 N sing N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing N 572 N sing N 573 N sing N 574 N doub N 575 N sing N 576 N sing N 577 N sing N 578 N sing Y 579 N doub Y 580 N sing Y 581 N sing N 582 N sing Y 583 N doub N 584 N sing Y 585 N doub N 586 N sing Y 587 N sing N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N sing N 593 N sing N 594 N sing N 595 N sing N 596 N sing N 597 N sing N 598 N doub N 599 N sing N 600 N sing N 601 N sing N 602 N sing N 603 N sing N 604 N sing N 605 N sing N 606 N sing N 607 N sing N 608 N sing N 609 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 99 5982 5987 10.1073/pnas.082666399 11972040 Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography. 2002 10.2210/pdb1l9h/pdb pdb_00001l9h NAG C 2 HAS WRONG CHIRALITY AT ATOM C1 MAN C 3 HAS WRONG CHIRALITY AT ATOM C1 NAG D 2 HAS WRONG CHIRALITY AT ATOM C1 NAG E 2 HAS WRONG CHIRALITY AT ATOM C1 NAG F 2 HAS WRONG CHIRALITY AT ATOM C1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-03-25 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 BL41XU SPring-8 1.0000 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 39057.492 rhodopsin 2 nat polymer 586.542 alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 2 man branched 748.682 alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 306.395 nonyl beta-D-glucopyranoside 7 man non-polymer 200.590 MERCURY (II) ION 6 syn non-polymer 65.409 ZINC ION 7 syn non-polymer 148.200 HEPTANE-1,2,3-TRIOL 4 syn non-polymer 256.424 PALMITIC ACID 5 syn non-polymer 284.436 RETINAL 2 syn non-polymer 18.015 water 26 nat water no yes (ACE)MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYI LLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIM GVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA QQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN CMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA XMNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNL AVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF TWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT TLCCGKNPLGDDEASTTVSKTETSQVAPA A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n cattle Bos sample 9913 Bos taurus 1 4.10 70.0 VAPOR DIFFUSION, HANGING DROP 6.0 ammonium sulfate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 278K 278 atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_atoms pdbx_validate_chiral struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Derived calculations Version format compliance Advisory Atomic model Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2002-05-15 1 1 2008-04-28 1 2 2011-07-13 2 0 2020-07-29 2 1 2023-10-25 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.occupancy _atom_site.type_symbol _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession C NAG 505 n C NAG 1 C NAG 504 n C NAG 2 C MAN 503 n C MAN 3 E NAG 705 n D NAG 1 E NAG 704 n D NAG 2 D NAG 605 n E NAG 1 D NAG 604 n E NAG 2 D MAN 603 n E MAN 3 D MAN 602 n E MAN 4 F NAG 805 n F NAG 1 F NAG 804 n F NAG 2 b-nonylglucoside DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc 1F88 contains the same protein with MERCURY (II), ALPHA-D-MANNOSE, N-ACETYL-D-GLUCOSAMINE, RETINAL and ZINC ION. 1HZX contains the same protein at RESOLUTION 2.80 ANGSTROMS. RCSB Y PDBJ 2002-03-23 REL oligosaccharide oligosaccharide oligosaccharide DManpa1-4DGlcpNAcb1-4DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2/a4-b1_b4-c1 2 PDB2Glycan 1.1.0 WURCS DGlcpNAcb1-4DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 3 PDB2Glycan 1.1.0 WURCS DManpa1-3DManpa1-4DGlcpNAcb1-4DGlcpNAcb1- 4 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2-2/a4-b1_b4-c1_c3-d1 4 PDB2Glycan 1.1.0 WURCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O4 MAN NAG 3 2 2 O1 HO4 sing C1 O4 NAG NAG 2 1 3 O1 HO4 sing C1 O4 NAG NAG 2 1 4 O1 HO4 sing C1 O4 MAN NAG 3 2 4 O1 HO4 sing C1 O3 MAN MAN 4 3 4 O1 HO3 sing n n n n n n n n n BNG nonyl beta-D-glucopyranoside HG MERCURY (II) ION ZN ZINC ION HTO HEPTANE-1,2,3-TRIOL PLM PALMITIC ACID RET RETINAL HOH water 1F88 PDB ENTRY 1F88 PDB ENTRY 1HZX PDB experimental model 1HZX PDB ENTRY 1F88 PDB ENTRY 1HZX PDB experimental model BNG 1500 5 BNG BNG 1500 A BNG 1501 5 BNG BNG 1501 A BNG 1503 5 BNG BNG 1503 A BNG 1504 5 BNG BNG 1504 A BNG 1505 5 BNG BNG 1505 A HG 901 6 HG HG 901 A HG 903 6 HG HG 903 A HG 905 6 HG HG 905 A ZN 957 7 ZN ZN 957 A ZN 959 7 ZN ZN 959 A ZN 962 7 ZN ZN 962 A ZN 2011 7 ZN ZN 2011 A HTO 1400 8 HTO HTO 1400 A HTO 1401 8 HTO HTO 1401 A HTO 1404 8 HTO HTO 1404 A HTO 1405 8 HTO HTO 1405 A PLY 1410 9 PLM PLM 1410 A RET 1296 10 RET RET 1296 A PLY 1322 9 PLM PLM 1322 A PLY 1323 9 PLM PLM 1323 A BNG 1502 5 BNG BNG 1502 B BNG 1506 5 BNG BNG 1506 B HG 902 6 HG HG 902 B HG 904 6 HG HG 904 B HG 906 6 HG HG 906 B ZN 956 7 ZN ZN 956 B ZN 958 7 ZN ZN 958 B ZN 963 7 ZN ZN 963 B PLY 1407 9 PLM PLM 1407 B RET 1296 10 RET RET 1296 B PLY 1322 9 PLM PLM 1322 B HOH 964 11 HOH HOH 964 A HOH 2000 11 HOH HOH 2000 A HOH 2002 11 HOH HOH 2002 A HOH 2004 11 HOH HOH 2004 A HOH 2007 11 HOH HOH 2007 A HOH 2014 11 HOH HOH 2014 A HOH 2015 11 HOH HOH 2015 A HOH 2017 11 HOH HOH 2017 A HOH 2020 11 HOH HOH 2020 A HOH 2021 11 HOH HOH 2021 A HOH 2024 11 HOH HOH 2024 A HOH 2027 11 HOH HOH 2027 A HOH 2028 11 HOH HOH 2028 A HOH 2005 11 HOH HOH 2005 B HOH 2008 11 HOH HOH 2008 B HOH 2009 11 HOH HOH 2009 B HOH 2012 11 HOH HOH 2012 B HOH 2013 11 HOH HOH 2013 B HOH 2016 11 HOH HOH 2016 B HOH 2018 11 HOH HOH 2018 B HOH 2019 11 HOH HOH 2019 B HOH 2022 11 HOH HOH 2022 B HOH 2023 11 HOH HOH 2023 B HOH 2025 11 HOH HOH 2025 B HOH 2026 11 HOH HOH 2026 B HOH 2029 11 HOH HOH 2029 B ACE 0 n 1 ACE 0 A MET 1 n 2 MET 1 A ASN 2 n 3 ASN 2 A GLY 3 n 4 GLY 3 A THR 4 n 5 THR 4 A GLU 5 n 6 GLU 5 A GLY 6 n 7 GLY 6 A PRO 7 n 8 PRO 7 A ASN 8 n 9 ASN 8 A PHE 9 n 10 PHE 9 A TYR 10 n 11 TYR 10 A VAL 11 n 12 VAL 11 A PRO 12 n 13 PRO 12 A PHE 13 n 14 PHE 13 A SER 14 n 15 SER 14 A ASN 15 n 16 ASN 15 A LYS 16 n 17 LYS 16 A THR 17 n 18 THR 17 A GLY 18 n 19 GLY 18 A VAL 19 n 20 VAL 19 A VAL 20 n 21 VAL 20 A ARG 21 n 22 ARG 21 A SER 22 n 23 SER 22 A PRO 23 n 24 PRO 23 A PHE 24 n 25 PHE 24 A GLU 25 n 26 GLU 25 A ALA 26 n 27 ALA 26 A PRO 27 n 28 PRO 27 A GLN 28 n 29 GLN 28 A TYR 29 n 30 TYR 29 A TYR 30 n 31 TYR 30 A LEU 31 n 32 LEU 31 A ALA 32 n 33 ALA 32 A GLU 33 n 34 GLU 33 A PRO 34 n 35 PRO 34 A TRP 35 n 36 TRP 35 A GLN 36 n 37 GLN 36 A PHE 37 n 38 PHE 37 A SER 38 n 39 SER 38 A MET 39 n 40 MET 39 A LEU 40 n 41 LEU 40 A ALA 41 n 42 ALA 41 A ALA 42 n 43 ALA 42 A TYR 43 n 44 TYR 43 A MET 44 n 45 MET 44 A PHE 45 n 46 PHE 45 A LEU 46 n 47 LEU 46 A LEU 47 n 48 LEU 47 A ILE 48 n 49 ILE 48 A MET 49 n 50 MET 49 A LEU 50 n 51 LEU 50 A GLY 51 n 52 GLY 51 A PHE 52 n 53 PHE 52 A PRO 53 n 54 PRO 53 A ILE 54 n 55 ILE 54 A ASN 55 n 56 ASN 55 A PHE 56 n 57 PHE 56 A LEU 57 n 58 LEU 57 A THR 58 n 59 THR 58 A LEU 59 n 60 LEU 59 A TYR 60 n 61 TYR 60 A VAL 61 n 62 VAL 61 A THR 62 n 63 THR 62 A VAL 63 n 64 VAL 63 A GLN 64 n 65 GLN 64 A HIS 65 n 66 HIS 65 A LYS 66 n 67 LYS 66 A LYS 67 n 68 LYS 67 A LEU 68 n 69 LEU 68 A ARG 69 n 70 ARG 69 A THR 70 n 71 THR 70 A PRO 71 n 72 PRO 71 A LEU 72 n 73 LEU 72 A ASN 73 n 74 ASN 73 A TYR 74 n 75 TYR 74 A ILE 75 n 76 ILE 75 A LEU 76 n 77 LEU 76 A LEU 77 n 78 LEU 77 A ASN 78 n 79 ASN 78 A LEU 79 n 80 LEU 79 A ALA 80 n 81 ALA 80 A VAL 81 n 82 VAL 81 A ALA 82 n 83 ALA 82 A ASP 83 n 84 ASP 83 A LEU 84 n 85 LEU 84 A PHE 85 n 86 PHE 85 A MET 86 n 87 MET 86 A VAL 87 n 88 VAL 87 A PHE 88 n 89 PHE 88 A GLY 89 n 90 GLY 89 A GLY 90 n 91 GLY 90 A PHE 91 n 92 PHE 91 A THR 92 n 93 THR 92 A THR 93 n 94 THR 93 A THR 94 n 95 THR 94 A LEU 95 n 96 LEU 95 A TYR 96 n 97 TYR 96 A THR 97 n 98 THR 97 A SER 98 n 99 SER 98 A LEU 99 n 100 LEU 99 A HIS 100 n 101 HIS 100 A GLY 101 n 102 GLY 101 A TYR 102 n 103 TYR 102 A PHE 103 n 104 PHE 103 A VAL 104 n 105 VAL 104 A PHE 105 n 106 PHE 105 A GLY 106 n 107 GLY 106 A PRO 107 n 108 PRO 107 A THR 108 n 109 THR 108 A GLY 109 n 110 GLY 109 A CYS 110 n 111 CYS 110 A ASN 111 n 112 ASN 111 A LEU 112 n 113 LEU 112 A GLU 113 n 114 GLU 113 A GLY 114 n 115 GLY 114 A PHE 115 n 116 PHE 115 A PHE 116 n 117 PHE 116 A ALA 117 n 118 ALA 117 A THR 118 n 119 THR 118 A LEU 119 n 120 LEU 119 A GLY 120 n 121 GLY 120 A GLY 121 n 122 GLY 121 A GLU 122 n 123 GLU 122 A ILE 123 n 124 ILE 123 A ALA 124 n 125 ALA 124 A LEU 125 n 126 LEU 125 A TRP 126 n 127 TRP 126 A SER 127 n 128 SER 127 A LEU 128 n 129 LEU 128 A VAL 129 n 130 VAL 129 A VAL 130 n 131 VAL 130 A LEU 131 n 132 LEU 131 A ALA 132 n 133 ALA 132 A ILE 133 n 134 ILE 133 A GLU 134 n 135 GLU 134 A ARG 135 n 136 ARG 135 A TYR 136 n 137 TYR 136 A VAL 137 n 138 VAL 137 A VAL 138 n 139 VAL 138 A VAL 139 n 140 VAL 139 A CYS 140 n 141 CYS 140 A LYS 141 n 142 LYS 141 A PRO 142 n 143 PRO 142 A MET 143 n 144 MET 143 A SER 144 n 145 SER 144 A ASN 145 n 146 ASN 145 A PHE 146 n 147 PHE 146 A ARG 147 n 148 ARG 147 A PHE 148 n 149 PHE 148 A GLY 149 n 150 GLY 149 A GLU 150 n 151 GLU 150 A ASN 151 n 152 ASN 151 A HIS 152 n 153 HIS 152 A ALA 153 n 154 ALA 153 A ILE 154 n 155 ILE 154 A MET 155 n 156 MET 155 A GLY 156 n 157 GLY 156 A VAL 157 n 158 VAL 157 A ALA 158 n 159 ALA 158 A PHE 159 n 160 PHE 159 A THR 160 n 161 THR 160 A TRP 161 n 162 TRP 161 A VAL 162 n 163 VAL 162 A MET 163 n 164 MET 163 A ALA 164 n 165 ALA 164 A LEU 165 n 166 LEU 165 A ALA 166 n 167 ALA 166 A CYS 167 n 168 CYS 167 A ALA 168 n 169 ALA 168 A ALA 169 n 170 ALA 169 A PRO 170 n 171 PRO 170 A PRO 171 n 172 PRO 171 A LEU 172 n 173 LEU 172 A VAL 173 n 174 VAL 173 A GLY 174 n 175 GLY 174 A TRP 175 n 176 TRP 175 A SER 176 n 177 SER 176 A ARG 177 n 178 ARG 177 A TYR 178 n 179 TYR 178 A ILE 179 n 180 ILE 179 A PRO 180 n 181 PRO 180 A GLU 181 n 182 GLU 181 A GLY 182 n 183 GLY 182 A MET 183 n 184 MET 183 A GLN 184 n 185 GLN 184 A CYS 185 n 186 CYS 185 A SER 186 n 187 SER 186 A CYS 187 n 188 CYS 187 A GLY 188 n 189 GLY 188 A ILE 189 n 190 ILE 189 A ASP 190 n 191 ASP 190 A TYR 191 n 192 TYR 191 A TYR 192 n 193 TYR 192 A THR 193 n 194 THR 193 A PRO 194 n 195 PRO 194 A HIS 195 n 196 HIS 195 A GLU 196 n 197 GLU 196 A GLU 197 n 198 GLU 197 A THR 198 n 199 THR 198 A ASN 199 n 200 ASN 199 A ASN 200 n 201 ASN 200 A GLU 201 n 202 GLU 201 A SER 202 n 203 SER 202 A PHE 203 n 204 PHE 203 A VAL 204 n 205 VAL 204 A ILE 205 n 206 ILE 205 A TYR 206 n 207 TYR 206 A MET 207 n 208 MET 207 A PHE 208 n 209 PHE 208 A VAL 209 n 210 VAL 209 A VAL 210 n 211 VAL 210 A HIS 211 n 212 HIS 211 A PHE 212 n 213 PHE 212 A ILE 213 n 214 ILE 213 A ILE 214 n 215 ILE 214 A PRO 215 n 216 PRO 215 A LEU 216 n 217 LEU 216 A ILE 217 n 218 ILE 217 A VAL 218 n 219 VAL 218 A ILE 219 n 220 ILE 219 A PHE 220 n 221 PHE 220 A PHE 221 n 222 PHE 221 A CYS 222 n 223 CYS 222 A TYR 223 n 224 TYR 223 A GLY 224 n 225 GLY 224 A GLN 225 n 226 GLN 225 A LEU 226 n 227 LEU 226 A VAL 227 n 228 VAL 227 A PHE 228 n 229 PHE 228 A THR 229 n 230 THR 229 A VAL 230 n 231 VAL 230 A LYS 231 n 232 LYS 231 A GLU 232 n 233 GLU 232 A ALA 233 n 234 ALA 233 A ALA 234 n 235 ALA 234 A ALA 235 n 236 ALA 235 A n 237 236 A n 238 237 A n 239 238 A n 240 239 A n 241 240 A ALA 241 n 242 ALA 241 A THR 242 n 243 THR 242 A THR 243 n 244 THR 243 A GLN 244 n 245 GLN 244 A LYS 245 n 246 LYS 245 A ALA 246 n 247 ALA 246 A GLU 247 n 248 GLU 247 A LYS 248 n 249 LYS 248 A GLU 249 n 250 GLU 249 A VAL 250 n 251 VAL 250 A THR 251 n 252 THR 251 A ARG 252 n 253 ARG 252 A MET 253 n 254 MET 253 A VAL 254 n 255 VAL 254 A ILE 255 n 256 ILE 255 A ILE 256 n 257 ILE 256 A MET 257 n 258 MET 257 A VAL 258 n 259 VAL 258 A ILE 259 n 260 ILE 259 A ALA 260 n 261 ALA 260 A PHE 261 n 262 PHE 261 A LEU 262 n 263 LEU 262 A ILE 263 n 264 ILE 263 A CYS 264 n 265 CYS 264 A TRP 265 n 266 TRP 265 A LEU 266 n 267 LEU 266 A PRO 267 n 268 PRO 267 A TYR 268 n 269 TYR 268 A ALA 269 n 270 ALA 269 A GLY 270 n 271 GLY 270 A VAL 271 n 272 VAL 271 A ALA 272 n 273 ALA 272 A PHE 273 n 274 PHE 273 A TYR 274 n 275 TYR 274 A ILE 275 n 276 ILE 275 A PHE 276 n 277 PHE 276 A THR 277 n 278 THR 277 A HIS 278 n 279 HIS 278 A GLN 279 n 280 GLN 279 A GLY 280 n 281 GLY 280 A SER 281 n 282 SER 281 A ASP 282 n 283 ASP 282 A PHE 283 n 284 PHE 283 A GLY 284 n 285 GLY 284 A PRO 285 n 286 PRO 285 A ILE 286 n 287 ILE 286 A PHE 287 n 288 PHE 287 A MET 288 n 289 MET 288 A THR 289 n 290 THR 289 A ILE 290 n 291 ILE 290 A PRO 291 n 292 PRO 291 A ALA 292 n 293 ALA 292 A PHE 293 n 294 PHE 293 A PHE 294 n 295 PHE 294 A ALA 295 n 296 ALA 295 A LYS 296 n 297 LYS 296 A THR 297 n 298 THR 297 A SER 298 n 299 SER 298 A ALA 299 n 300 ALA 299 A VAL 300 n 301 VAL 300 A TYR 301 n 302 TYR 301 A ASN 302 n 303 ASN 302 A PRO 303 n 304 PRO 303 A VAL 304 n 305 VAL 304 A ILE 305 n 306 ILE 305 A TYR 306 n 307 TYR 306 A ILE 307 n 308 ILE 307 A MET 308 n 309 MET 308 A MET 309 n 310 MET 309 A ASN 310 n 311 ASN 310 A LYS 311 n 312 LYS 311 A GLN 312 n 313 GLN 312 A PHE 313 n 314 PHE 313 A ARG 314 n 315 ARG 314 A ASN 315 n 316 ASN 315 A CYS 316 n 317 CYS 316 A MET 317 n 318 MET 317 A VAL 318 n 319 VAL 318 A THR 319 n 320 THR 319 A THR 320 n 321 THR 320 A LEU 321 n 322 LEU 321 A CYS 322 n 323 CYS 322 A CYS 323 n 324 CYS 323 A GLY 324 n 325 GLY 324 A LYS 325 n 326 LYS 325 A ASN 326 n 327 ASN 326 A PRO 327 n 328 PRO 327 A LEU 328 n 329 LEU 328 A GLY 329 n 330 GLY 329 A ASP 330 n 331 ASP 330 A n 332 331 A n 333 332 A n 334 333 A SER 334 n 335 SER 334 A THR 335 n 336 THR 335 A THR 336 n 337 THR 336 A VAL 337 n 338 VAL 337 A SER 338 n 339 SER 338 A LYS 339 n 340 LYS 339 A THR 340 n 341 THR 340 A GLU 341 n 342 GLU 341 A THR 342 n 343 THR 342 A SER 343 n 344 SER 343 A GLN 344 n 345 GLN 344 A VAL 345 n 346 VAL 345 A ALA 346 n 347 ALA 346 A PRO 347 n 348 PRO 347 A ALA 348 n 349 ALA 348 A ACE 0 n 1 ACE 0 B MET 1 n 2 MET 1 B ASN 2 n 3 ASN 2 B GLY 3 n 4 GLY 3 B THR 4 n 5 THR 4 B GLU 5 n 6 GLU 5 B GLY 6 n 7 GLY 6 B PRO 7 n 8 PRO 7 B ASN 8 n 9 ASN 8 B PHE 9 n 10 PHE 9 B TYR 10 n 11 TYR 10 B VAL 11 n 12 VAL 11 B PRO 12 n 13 PRO 12 B PHE 13 n 14 PHE 13 B SER 14 n 15 SER 14 B ASN 15 n 16 ASN 15 B LYS 16 n 17 LYS 16 B THR 17 n 18 THR 17 B GLY 18 n 19 GLY 18 B VAL 19 n 20 VAL 19 B VAL 20 n 21 VAL 20 B ARG 21 n 22 ARG 21 B SER 22 n 23 SER 22 B PRO 23 n 24 PRO 23 B PHE 24 n 25 PHE 24 B GLU 25 n 26 GLU 25 B ALA 26 n 27 ALA 26 B PRO 27 n 28 PRO 27 B GLN 28 n 29 GLN 28 B TYR 29 n 30 TYR 29 B TYR 30 n 31 TYR 30 B LEU 31 n 32 LEU 31 B ALA 32 n 33 ALA 32 B GLU 33 n 34 GLU 33 B PRO 34 n 35 PRO 34 B TRP 35 n 36 TRP 35 B GLN 36 n 37 GLN 36 B PHE 37 n 38 PHE 37 B SER 38 n 39 SER 38 B MET 39 n 40 MET 39 B LEU 40 n 41 LEU 40 B ALA 41 n 42 ALA 41 B ALA 42 n 43 ALA 42 B TYR 43 n 44 TYR 43 B MET 44 n 45 MET 44 B PHE 45 n 46 PHE 45 B LEU 46 n 47 LEU 46 B LEU 47 n 48 LEU 47 B ILE 48 n 49 ILE 48 B MET 49 n 50 MET 49 B LEU 50 n 51 LEU 50 B GLY 51 n 52 GLY 51 B PHE 52 n 53 PHE 52 B PRO 53 n 54 PRO 53 B ILE 54 n 55 ILE 54 B ASN 55 n 56 ASN 55 B PHE 56 n 57 PHE 56 B LEU 57 n 58 LEU 57 B THR 58 n 59 THR 58 B LEU 59 n 60 LEU 59 B TYR 60 n 61 TYR 60 B VAL 61 n 62 VAL 61 B THR 62 n 63 THR 62 B VAL 63 n 64 VAL 63 B GLN 64 n 65 GLN 64 B HIS 65 n 66 HIS 65 B LYS 66 n 67 LYS 66 B LYS 67 n 68 LYS 67 B LEU 68 n 69 LEU 68 B ARG 69 n 70 ARG 69 B THR 70 n 71 THR 70 B PRO 71 n 72 PRO 71 B LEU 72 n 73 LEU 72 B ASN 73 n 74 ASN 73 B TYR 74 n 75 TYR 74 B ILE 75 n 76 ILE 75 B LEU 76 n 77 LEU 76 B LEU 77 n 78 LEU 77 B ASN 78 n 79 ASN 78 B LEU 79 n 80 LEU 79 B ALA 80 n 81 ALA 80 B VAL 81 n 82 VAL 81 B ALA 82 n 83 ALA 82 B ASP 83 n 84 ASP 83 B LEU 84 n 85 LEU 84 B PHE 85 n 86 PHE 85 B MET 86 n 87 MET 86 B VAL 87 n 88 VAL 87 B PHE 88 n 89 PHE 88 B GLY 89 n 90 GLY 89 B GLY 90 n 91 GLY 90 B PHE 91 n 92 PHE 91 B THR 92 n 93 THR 92 B THR 93 n 94 THR 93 B THR 94 n 95 THR 94 B LEU 95 n 96 LEU 95 B TYR 96 n 97 TYR 96 B THR 97 n 98 THR 97 B SER 98 n 99 SER 98 B LEU 99 n 100 LEU 99 B HIS 100 n 101 HIS 100 B GLY 101 n 102 GLY 101 B TYR 102 n 103 TYR 102 B PHE 103 n 104 PHE 103 B VAL 104 n 105 VAL 104 B PHE 105 n 106 PHE 105 B GLY 106 n 107 GLY 106 B PRO 107 n 108 PRO 107 B THR 108 n 109 THR 108 B GLY 109 n 110 GLY 109 B CYS 110 n 111 CYS 110 B ASN 111 n 112 ASN 111 B LEU 112 n 113 LEU 112 B GLU 113 n 114 GLU 113 B GLY 114 n 115 GLY 114 B PHE 115 n 116 PHE 115 B PHE 116 n 117 PHE 116 B ALA 117 n 118 ALA 117 B THR 118 n 119 THR 118 B LEU 119 n 120 LEU 119 B GLY 120 n 121 GLY 120 B GLY 121 n 122 GLY 121 B GLU 122 n 123 GLU 122 B ILE 123 n 124 ILE 123 B ALA 124 n 125 ALA 124 B LEU 125 n 126 LEU 125 B TRP 126 n 127 TRP 126 B SER 127 n 128 SER 127 B LEU 128 n 129 LEU 128 B VAL 129 n 130 VAL 129 B VAL 130 n 131 VAL 130 B LEU 131 n 132 LEU 131 B ALA 132 n 133 ALA 132 B ILE 133 n 134 ILE 133 B GLU 134 n 135 GLU 134 B ARG 135 n 136 ARG 135 B TYR 136 n 137 TYR 136 B VAL 137 n 138 VAL 137 B VAL 138 n 139 VAL 138 B VAL 139 n 140 VAL 139 B CYS 140 n 141 CYS 140 B n 142 141 B n 143 142 B n 144 143 B n 145 144 B n 146 145 B n 147 146 B n 148 147 B n 149 148 B GLY 149 n 150 GLY 149 B GLU 150 n 151 GLU 150 B ASN 151 n 152 ASN 151 B HIS 152 n 153 HIS 152 B ALA 153 n 154 ALA 153 B ILE 154 n 155 ILE 154 B MET 155 n 156 MET 155 B GLY 156 n 157 GLY 156 B VAL 157 n 158 VAL 157 B ALA 158 n 159 ALA 158 B PHE 159 n 160 PHE 159 B THR 160 n 161 THR 160 B TRP 161 n 162 TRP 161 B VAL 162 n 163 VAL 162 B MET 163 n 164 MET 163 B ALA 164 n 165 ALA 164 B LEU 165 n 166 LEU 165 B ALA 166 n 167 ALA 166 B CYS 167 n 168 CYS 167 B ALA 168 n 169 ALA 168 B ALA 169 n 170 ALA 169 B PRO 170 n 171 PRO 170 B PRO 171 n 172 PRO 171 B LEU 172 n 173 LEU 172 B VAL 173 n 174 VAL 173 B GLY 174 n 175 GLY 174 B TRP 175 n 176 TRP 175 B SER 176 n 177 SER 176 B ARG 177 n 178 ARG 177 B TYR 178 n 179 TYR 178 B ILE 179 n 180 ILE 179 B PRO 180 n 181 PRO 180 B GLU 181 n 182 GLU 181 B GLY 182 n 183 GLY 182 B MET 183 n 184 MET 183 B GLN 184 n 185 GLN 184 B CYS 185 n 186 CYS 185 B SER 186 n 187 SER 186 B CYS 187 n 188 CYS 187 B GLY 188 n 189 GLY 188 B ILE 189 n 190 ILE 189 B ASP 190 n 191 ASP 190 B TYR 191 n 192 TYR 191 B TYR 192 n 193 TYR 192 B THR 193 n 194 THR 193 B PRO 194 n 195 PRO 194 B HIS 195 n 196 HIS 195 B GLU 196 n 197 GLU 196 B GLU 197 n 198 GLU 197 B THR 198 n 199 THR 198 B ASN 199 n 200 ASN 199 B ASN 200 n 201 ASN 200 B GLU 201 n 202 GLU 201 B SER 202 n 203 SER 202 B PHE 203 n 204 PHE 203 B VAL 204 n 205 VAL 204 B ILE 205 n 206 ILE 205 B TYR 206 n 207 TYR 206 B MET 207 n 208 MET 207 B PHE 208 n 209 PHE 208 B VAL 209 n 210 VAL 209 B VAL 210 n 211 VAL 210 B HIS 211 n 212 HIS 211 B PHE 212 n 213 PHE 212 B ILE 213 n 214 ILE 213 B ILE 214 n 215 ILE 214 B PRO 215 n 216 PRO 215 B LEU 216 n 217 LEU 216 B ILE 217 n 218 ILE 217 B VAL 218 n 219 VAL 218 B ILE 219 n 220 ILE 219 B PHE 220 n 221 PHE 220 B PHE 221 n 222 PHE 221 B CYS 222 n 223 CYS 222 B TYR 223 n 224 TYR 223 B GLY 224 n 225 GLY 224 B GLN 225 n 226 GLN 225 B LEU 226 n 227 LEU 226 B n 228 227 B n 229 228 B n 230 229 B n 231 230 B n 232 231 B n 233 232 B n 234 233 B n 235 234 B n 236 235 B n 237 236 B n 238 237 B n 239 238 B n 240 239 B n 241 240 B n 242 241 B n 243 242 B n 244 243 B GLN 244 n 245 GLN 244 B LYS 245 n 246 LYS 245 B ALA 246 n 247 ALA 246 B GLU 247 n 248 GLU 247 B LYS 248 n 249 LYS 248 B GLU 249 n 250 GLU 249 B VAL 250 n 251 VAL 250 B THR 251 n 252 THR 251 B ARG 252 n 253 ARG 252 B MET 253 n 254 MET 253 B VAL 254 n 255 VAL 254 B ILE 255 n 256 ILE 255 B ILE 256 n 257 ILE 256 B MET 257 n 258 MET 257 B VAL 258 n 259 VAL 258 B ILE 259 n 260 ILE 259 B ALA 260 n 261 ALA 260 B PHE 261 n 262 PHE 261 B LEU 262 n 263 LEU 262 B ILE 263 n 264 ILE 263 B CYS 264 n 265 CYS 264 B TRP 265 n 266 TRP 265 B LEU 266 n 267 LEU 266 B PRO 267 n 268 PRO 267 B TYR 268 n 269 TYR 268 B ALA 269 n 270 ALA 269 B GLY 270 n 271 GLY 270 B VAL 271 n 272 VAL 271 B ALA 272 n 273 ALA 272 B PHE 273 n 274 PHE 273 B TYR 274 n 275 TYR 274 B ILE 275 n 276 ILE 275 B PHE 276 n 277 PHE 276 B THR 277 n 278 THR 277 B HIS 278 n 279 HIS 278 B GLN 279 n 280 GLN 279 B GLY 280 n 281 GLY 280 B SER 281 n 282 SER 281 B ASP 282 n 283 ASP 282 B PHE 283 n 284 PHE 283 B GLY 284 n 285 GLY 284 B PRO 285 n 286 PRO 285 B ILE 286 n 287 ILE 286 B PHE 287 n 288 PHE 287 B MET 288 n 289 MET 288 B THR 289 n 290 THR 289 B ILE 290 n 291 ILE 290 B PRO 291 n 292 PRO 291 B ALA 292 n 293 ALA 292 B PHE 293 n 294 PHE 293 B PHE 294 n 295 PHE 294 B ALA 295 n 296 ALA 295 B LYS 296 n 297 LYS 296 B THR 297 n 298 THR 297 B SER 298 n 299 SER 298 B ALA 299 n 300 ALA 299 B VAL 300 n 301 VAL 300 B TYR 301 n 302 TYR 301 B ASN 302 n 303 ASN 302 B PRO 303 n 304 PRO 303 B VAL 304 n 305 VAL 304 B ILE 305 n 306 ILE 305 B TYR 306 n 307 TYR 306 B ILE 307 n 308 ILE 307 B MET 308 n 309 MET 308 B MET 309 n 310 MET 309 B ASN 310 n 311 ASN 310 B LYS 311 n 312 LYS 311 B GLN 312 n 313 GLN 312 B PHE 313 n 314 PHE 313 B ARG 314 n 315 ARG 314 B ASN 315 n 316 ASN 315 B CYS 316 n 317 CYS 316 B MET 317 n 318 MET 317 B VAL 318 n 319 VAL 318 B THR 319 n 320 THR 319 B THR 320 n 321 THR 320 B LEU 321 n 322 LEU 321 B CYS 322 n 323 CYS 322 B CYS 323 n 324 CYS 323 B GLY 324 n 325 GLY 324 B LYS 325 n 326 LYS 325 B ASN 326 n 327 ASN 326 B n 328 327 B n 329 328 B n 330 329 B n 331 330 B n 332 331 B n 333 332 B n 334 333 B n 335 334 B n 336 335 B n 337 336 B n 338 337 B n 339 338 B n 340 339 B n 341 340 B n 342 341 B n 343 342 B n 344 343 B n 345 344 B n 346 345 B n 347 346 B n 348 347 B n 349 348 B author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric software_defined_assembly PISA 2 dimeric software_defined_assembly PISA,PQS 2 dimeric 12940 -280 30960 15470 -242 28430 A HIS 195 A NE2 HIS 196 1_555 A ZN 2011 R ZN ZN 1_555 A GLU 197 A OE1 GLU 198 1_555 78.9 A GLU 201 A OE2 GLU 202 1_555 A ZN 957 O ZN ZN 1_555 A GLN 279 A OE1 GLN 280 1_555 78.7 A GLU 201 A OE2 GLU 202 1_555 A ZN 957 O ZN ZN 1_555 A GLN 279 A NE2 GLN 280 1_555 142.1 A GLN 279 A OE1 GLN 280 1_555 A ZN 957 O ZN ZN 1_555 A GLN 279 A NE2 GLN 280 1_555 65.4 B MET 163 B O MET 164 1_555 B ZN 963 HA ZN ZN 1_555 B HIS 211 B ND1 HIS 212 1_555 113.5 B HIS 195 B NE2 HIS 196 1_555 B ZN 956 FA ZN ZN 1_555 B GLU 197 B OE1 GLU 198 1_555 77.5 B GLU 201 B OE1 GLU 202 1_555 B ZN 958 GA ZN ZN 1_555 B GLU 201 B OE2 GLU 202 1_555 57.8 B GLU 201 B OE1 GLU 202 1_555 B ZN 958 GA ZN ZN 1_555 B GLN 279 B NE2 GLN 280 1_555 153.1 B GLU 201 B OE2 GLU 202 1_555 B ZN 958 GA ZN ZN 1_555 B GLN 279 B NE2 GLN 280 1_555 117.1 A ASN 2 GLYCOSYLATION SITE A ASN 3 ASN A ASN 15 GLYCOSYLATION SITE A ASN 16 ASN B ASN 2 GLYCOSYLATION SITE B ASN 3 ASN B ASN 15 GLYCOSYLATION SITE B ASN 16 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -x+1,-y,z+1/2 crystal symmetry operation 96.7450000000 0.0000000000 74.6500000000 A N THR 4 A N THR 5 A O VAL 11 A O VAL 12 A N ILE 179 A N ILE 180 A O GLY 188 A O GLY 189 B N THR 4 B N THR 5 B O VAL 11 B O VAL 12 B N GLU 181 B N GLU 182 B O SER 186 B O SER 187 1 A O1 PLM 1410 W O1 PLM 1 1 N 1 A O2 PLM 1410 W O2 PLM 1 1 N 1 B O1 PLM 1407 IA O1 PLM 1 1 N 1 B O2 PLM 1407 IA O2 PLM 1 1 N 1 A GLN 236 A GLN 237 1 Y 1 A GLN 237 A GLN 238 1 Y 1 A GLN 238 A GLN 239 1 Y 1 A GLU 239 A GLU 240 1 Y 1 A SER 240 A SER 241 1 Y 1 A ASP 331 A ASP 332 1 Y 1 A GLU 332 A GLU 333 1 Y 1 A ALA 333 A ALA 334 1 Y 1 B LYS 141 B LYS 142 1 Y 1 B PRO 142 B PRO 143 1 Y 1 B MET 143 B MET 144 1 Y 1 B SER 144 B SER 145 1 Y 1 B ASN 145 B ASN 146 1 Y 1 B PHE 146 B PHE 147 1 Y 1 B ARG 147 B ARG 148 1 Y 1 B PHE 148 B PHE 149 1 Y 1 B VAL 227 B VAL 228 1 Y 1 B PHE 228 B PHE 229 1 Y 1 B THR 229 B THR 230 1 Y 1 B VAL 230 B VAL 231 1 Y 1 B LYS 231 B LYS 232 1 Y 1 B GLU 232 B GLU 233 1 Y 1 B ALA 233 B ALA 234 1 Y 1 B ALA 234 B ALA 235 1 Y 1 B ALA 235 B ALA 236 1 Y 1 B GLN 236 B GLN 237 1 Y 1 B GLN 237 B GLN 238 1 Y 1 B GLN 238 B GLN 239 1 Y 1 B GLU 239 B GLU 240 1 Y 1 B SER 240 B SER 241 1 Y 1 B ALA 241 B ALA 242 1 Y 1 B THR 242 B THR 243 1 Y 1 B THR 243 B THR 244 1 Y 1 B PRO 327 B PRO 328 1 Y 1 B LEU 328 B LEU 329 1 Y 1 B GLY 329 B GLY 330 1 Y 1 B ASP 330 B ASP 331 1 Y 1 B ASP 331 B ASP 332 1 Y 1 B GLU 332 B GLU 333 1 Y 1 B ALA 333 B ALA 334 1 Y 1 B SER 334 B SER 335 1 Y 1 B THR 335 B THR 336 1 Y 1 B THR 336 B THR 337 1 Y 1 B VAL 337 B VAL 338 1 Y 1 B SER 338 B SER 339 1 Y 1 B LYS 339 B LYS 340 1 Y 1 B THR 340 B THR 341 1 Y 1 B GLU 341 B GLU 342 1 Y 1 B THR 342 B THR 343 1 Y 1 B SER 343 B SER 344 1 Y 1 B GLN 344 B GLN 345 1 Y 1 B VAL 345 B VAL 346 1 Y 1 B ALA 346 B ALA 347 1 Y 1 B PRO 347 B PRO 348 1 Y 1 B ALA 348 B ALA 349 1 Y 1 C C1 NAG 2 WRONG HAND 1 C C1 MAN 3 WRONG HAND 1 D C1 NAG 2 WRONG HAND 1 E C1 NAG 2 WRONG HAND 1 F C1 NAG 2 WRONG HAND 1 A ASN 15 0.125 SIDE CHAIN 1 B TYR 96 0.076 SIDE CHAIN 1 -13.67 2.00 110.40 96.73 A A A CB CA C ASN ASN ASN 15 15 15 N 1 11.56 1.80 110.60 122.16 A A A N CA CB ASN ASN ASN 15 15 15 N 1 -26.41 2.40 116.70 90.29 A A A CB CG ND2 ASN ASN ASN 15 15 15 N 1 9.89 1.50 119.30 129.19 A A A C N CA ASN PRO PRO 326 327 327 Y 1 14.09 2.20 113.40 127.49 B B B CA CB CG ASN ASN ASN 2 2 2 N 1 -22.09 2.00 110.40 88.31 B B B CB CA C ASN ASN ASN 15 15 15 N 1 13.61 1.80 110.60 124.21 B B B N CA CB ASN ASN ASN 15 15 15 N 1 15.61 2.30 111.70 127.31 B B B CD CE NZ LYS LYS LYS 296 296 296 N 1 A A CG ND2 ASN ASN 15 15 0.198 0.025 1.324 1.522 N 1 A TYR 10 -166.58 88.78 1 A PRO 12 -79.08 46.69 1 A ALA 32 -166.64 -169.55 1 A PHE 52 -66.68 -70.03 1 A LYS 66 -64.35 1.30 1 A VAL 139 -92.91 -60.62 1 A CYS 140 -86.82 34.69 1 A LYS 141 -22.43 118.60 1 A PRO 142 -81.41 -75.88 1 A SER 144 -51.49 -6.24 1 A PHE 146 175.60 145.17 1 A SER 176 67.84 -171.91 1 A GLN 184 73.56 33.19 1 A HIS 195 20.27 85.94 1 A VAL 209 -101.64 -61.84 1 A PHE 212 -169.40 -61.04 1 A LEU 226 -84.12 41.78 1 A THR 229 -46.70 -80.03 1 A LYS 231 -47.31 -105.16 1 A GLU 232 -160.19 -11.67 1 A ALA 233 -79.05 -149.62 1 A ALA 234 167.64 165.72 1 A HIS 278 -113.55 54.48 1 A VAL 300 -152.53 -20.48 1 A CYS 323 58.40 -44.14 1 A LYS 325 177.66 -152.40 1 A ASN 326 74.97 69.07 1 A PRO 327 -86.81 41.08 1 A LEU 328 12.26 34.03 1 A THR 335 -68.98 -167.04 1 A VAL 337 170.15 139.49 1 A SER 338 179.26 -141.50 1 A LYS 339 -121.17 -98.21 1 A GLU 341 -97.88 -136.55 1 A ALA 346 -144.84 34.16 1 A PRO 347 -62.91 -126.63 1 B TYR 10 -167.94 95.04 1 B PRO 12 -71.86 38.08 1 B ASN 15 -117.20 63.10 1 B SER 22 -33.58 133.56 1 B TYR 29 -57.94 -3.69 1 B LEU 68 -67.64 84.77 1 B ARG 69 -151.86 14.06 1 B VAL 138 -68.94 24.47 1 B VAL 139 -146.75 -3.66 1 B PRO 171 -57.42 0.61 1 B SER 176 82.62 -175.85 1 B GLN 184 72.32 30.92 1 B HIS 195 11.73 81.98 1 B ASN 199 74.42 66.25 1 B PHE 212 -154.36 -66.14 1 B GLN 225 -98.86 -80.92 1 B LYS 245 -139.47 -33.64 1 B SER 281 -76.46 -164.57 1 B VAL 300 -144.10 -22.57 1 B ASN 315 -90.40 -61.72 1 B CYS 323 70.12 -2.74 69.1 -10.075 -10.451 20.527 0.225 0.188 2.6 30 1430 32717 29929 71.0 random 1 THROUGHOUT 0 MOLECULAR REPLACEMENT PDB ENTRY 1F88 PDB ENTRY 1HZX Engh & Huber 0.42 0.38 5.0 0.62 0.65 2.6 30 26 5584 475 0 5083 1.52 0.013 21.17 1.0067 1.23 1.50 2.23 2.00 1.47 2.00 2.40 2.50 69.4 2.6 30 1L9H 36092 36092 0 0 0.099 1 12.0 3.5 85.6 0.555 2.60 2.69 1.0 1 40.0 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 Crystal structure of bovine rhodopsin at 2.6 angstroms RESOLUTION 1 N N 1 N N 2 N N 3 N N 4 N N 3 N N 5 N N 5 N N 5 N N 5 N N 5 N N 6 N N 6 N N 6 N N 7 N N 7 N N 7 N N 7 N N 8 N N 8 N N 8 N N 8 N N 9 N N 10 N N 9 N N 9 N N 5 N N 5 N N 6 N N 6 N N 6 N N 7 N N 7 N N 7 N N 9 N N 10 N N 9 N N 11 N N 11 N N A GLU 33 A GLU 34 HELX_P A HIS 65 A HIS 66 1 1 33 A THR 70 A THR 71 HELX_P A GLY 90 A GLY 91 1 2 21 A GLY 90 A GLY 91 HELX_P A GLY 101 A GLY 102 1 3 12 A PHE 105 A PHE 106 HELX_P A ARG 135 A ARG 136 1 4 31 A ARG 135 A ARG 136 HELX_P A CYS 140 A CYS 141 1 5 6 A GLY 149 A GLY 150 HELX_P A ALA 169 A ALA 170 1 6 21 A PRO 170 A PRO 171 HELX_P A VAL 173 A VAL 174 5 7 4 A ASN 199 A ASN 200 HELX_P A HIS 211 A HIS 212 1 8 13 A PHE 212 A PHE 213 HELX_P A LEU 226 A LEU 227 1 9 15 A THR 243 A THR 244 HELX_P A HIS 278 A HIS 279 1 10 36 A GLY 284 A GLY 285 HELX_P A LYS 296 A LYS 297 1 11 13 A THR 297 A THR 298 HELX_P A ALA 299 A ALA 300 5 12 3 A VAL 300 A VAL 301 HELX_P A ASN 310 A ASN 311 1 13 11 A ASN 310 A ASN 311 HELX_P A CYS 322 A CYS 323 1 14 13 B GLU 33 B GLU 34 HELX_P B HIS 65 B HIS 66 1 15 33 B THR 70 B THR 71 HELX_P B GLY 90 B GLY 91 1 16 21 B GLY 90 B GLY 91 HELX_P B GLY 101 B GLY 102 1 17 12 B PHE 105 B PHE 106 HELX_P B VAL 138 B VAL 139 1 18 34 B GLY 149 B GLY 150 HELX_P B ALA 169 B ALA 170 1 19 21 B PRO 170 B PRO 171 HELX_P B VAL 173 B VAL 174 5 20 4 B ASN 199 B ASN 200 HELX_P B HIS 211 B HIS 212 1 21 13 B PHE 212 B PHE 213 HELX_P B LEU 226 B LEU 227 1 22 15 B GLU 249 B GLU 250 HELX_P B HIS 278 B HIS 279 1 23 30 B PRO 285 B PRO 286 HELX_P B LYS 296 B LYS 297 1 24 12 B THR 297 B THR 298 HELX_P B ALA 299 B ALA 300 5 25 3 B VAL 300 B VAL 301 HELX_P B ASN 310 B ASN 311 1 26 11 B ASN 310 B ASN 311 HELX_P B CYS 322 B CYS 323 1 27 13 disulf 2.029 A CYS 110 A SG CYS 111 1_555 A CYS 187 A SG CYS 188 1_555 disulf 2.011 B CYS 110 B SG CYS 111 1_555 B CYS 187 B SG CYS 188 1_555 covale 1.340 both A ACE 0 A C ACE 1 1_555 A MET 1 A N MET 2 1_555 covale 2.006 one N-Glycosylation A ASN 2 A ND2 ASN 3 1_555 D NAG 1 D C1 NAG 1_555 covale 1.887 one N-Glycosylation A ASN 15 A ND2 ASN 16 1_555 C NAG 1 C C1 NAG 1_555 covale 1.349 one A LYS 296 A NZ LYS 297 1_555 A RET 1296 X C15 RET 1_555 covale 1.877 one A CYS 322 A SG CYS 323 1_555 A PLM 1322 Y C1 PLM 1_555 covale 1.888 one A CYS 323 A SG CYS 324 1_555 A PLM 1323 Z C1 PLM 1_555 covale 1.348 both B ACE 0 B C ACE 1 1_555 B MET 1 B N MET 2 1_555 covale 1.985 one N-Glycosylation B ASN 2 B ND2 ASN 3 1_555 F NAG 1 F C1 NAG 1_555 covale 1.576 one N-Glycosylation B ASN 15 B ND2 ASN 16 1_555 E NAG 1 E C1 NAG 1_555 covale 1.373 one B LYS 296 B NZ LYS 297 1_555 B RET 1296 JA C15 RET 1_555 covale 1.887 one B CYS 322 B SG CYS 323 1_555 B PLM 1322 KA C1 PLM 1_555 covale 1.391 both C NAG 1 C O4 NAG 1_555 C NAG 2 C C1 NAG 1_555 covale 1.386 both C NAG 2 C O4 NAG 1_555 C MAN 3 C C1 MAN 1_555 covale 1.379 both D NAG 1 D O4 NAG 1_555 D NAG 2 D C1 NAG 1_555 covale 1.377 both E NAG 1 E O4 NAG 1_555 E NAG 2 E C1 NAG 1_555 covale 1.395 both E NAG 2 E O4 NAG 1_555 E MAN 3 E C1 MAN 1_555 covale 1.410 both E MAN 3 E O3 MAN 1_555 E MAN 4 E C1 MAN 1_555 covale 1.395 both F NAG 1 F O4 NAG 1_555 F NAG 2 F C1 NAG 1_555 metalc 2.270 A HIS 195 A NE2 HIS 196 1_555 A ZN 2011 R ZN ZN 1_555 metalc 2.367 A GLU 197 A OE1 GLU 198 1_555 A ZN 2011 R ZN ZN 1_555 metalc 1.933 A GLU 201 A OE2 GLU 202 1_555 A ZN 957 O ZN ZN 1_555 metalc 2.213 A GLN 279 A OE1 GLN 280 1_555 A ZN 957 O ZN ZN 1_555 metalc 1.908 A GLN 279 A NE2 GLN 280 1_555 A ZN 957 O ZN ZN 1_555 metalc 2.376 B MET 163 B O MET 164 1_555 B ZN 963 HA ZN ZN 1_555 metalc 2.121 B HIS 195 B NE2 HIS 196 1_555 B ZN 956 FA ZN ZN 1_555 metalc 1.943 B GLU 197 B OE1 GLU 198 1_555 B ZN 956 FA ZN ZN 1_555 metalc 2.359 B GLU 201 B OE1 GLU 202 1_555 B ZN 958 GA ZN ZN 1_555 metalc 2.191 B GLU 201 B OE2 GLU 202 1_555 B ZN 958 GA ZN ZN 1_555 metalc 2.300 B HIS 211 B ND1 HIS 212 1_555 B ZN 963 HA ZN ZN 1_555 metalc 2.208 B GLN 279 B NE2 GLN 280 1_555 B ZN 958 GA ZN ZN 1_555 SIGNALING PROTEIN G PROTEIN-COUPLED RECEPTOR, MEMBRANE PROTEIN, RETINAL PROTEIN, PHOTORECEPTOR, SIGNALING PROTEIN OPSD_BOVIN UNP 1 1 P02699 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA 1 348 1L9H 1 348 P02699 A 1 2 349 1 348 1L9H 1 348 P02699 B 1 2 349 2 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel A THR 4 A THR 5 A GLU 5 A GLU 6 A TYR 10 A TYR 11 A VAL 11 A VAL 12 A TYR 178 A TYR 179 A GLU 181 A GLU 182 A SER 186 A SER 187 A ILE 189 A ILE 190 B THR 4 B THR 5 B GLU 5 B GLU 6 B TYR 10 B TYR 11 B VAL 11 B VAL 12 B TYR 178 B TYR 179 B GLU 181 B GLU 182 B SER 186 B SER 187 B ILE 189 B ILE 190 76 P 41