0.008964 0.005175 0.000000 0.000000 0.010350 0.000000 0.000000 0.000000 0.017753 0.000000 0.000000 0.000000 Egloff, M.P. Benarroch, D. Selisko, B. Romette, J.L. Canard, B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 111.560 111.560 56.330 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C14 H20 N6 O5 S 384.411 n S-ADENOSYL-L-HOMOCYSTEINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N C N 294 N S N 295 N C N 296 N O N 297 N O N 298 N C N 299 S C N 300 N O N 301 S C N 302 N O N 303 R C N 304 N O N 305 R C Y 306 N N Y 307 N C Y 308 N N Y 309 N C Y 310 N C N 311 N N Y 312 N N Y 313 N C Y 314 N N Y 315 N C N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C N 341 N O N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N S N 351 N O N 352 N O N 353 N O N 354 N O N 355 N N N 356 S C N 357 N C N 358 N O N 359 R C N 360 N O N 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N N Y 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C N 410 N O N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N N N 424 S C N 425 N C N 426 N O N 427 N C N 428 N C N 429 N C N 430 N O N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing Y 310 N sing Y 311 N sing Y 312 N doub N 313 N sing Y 314 N sing Y 315 N sing Y 316 N doub N 317 N sing Y 318 N doub N 319 N sing N 320 N sing Y 321 N sing Y 322 N doub N 323 N sing Y 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N doub Y 374 N sing Y 375 N sing N 376 N sing Y 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing UK Embo J. EMJODG 0897 0261-4189 21 2757 2768 10.1093/emboj/21.11.2757 12032088 An RNA cap (nucleoside-2'-O-) methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization 2002 10.2210/pdb1l9k/pdb pdb_00001l9k 100 1 100 1 1 mirror CCD 2000-09-09 MARRESEARCH mirror CCD 2000-09-10 ADSC QUANTUM 4 Si [111] channel MAD M x-ray 1 diamond [111] crystal SINGLE WAVELENGTH M x-ray 1 0.83211 1.0 1.00474 1.0 1.00850 1.0 0.933 1.0 BM14 ESRF 0.83211, 1.00474, 1.00850 SYNCHROTRON ESRF BEAMLINE BM14 ID14-2 ESRF 0.933 SYNCHROTRON ESRF BEAMLINE ID14-2 34397.027 RNA-DIRECTED RNA POLYMERASE 2.7.7.48 NS5 N-terminal domain V135I, K139R, N173S, P188S, R193K, T196A, Y201H 1 man polymer 96.063 SULFATE ION 5 syn non-polymer 384.411 S-ADENOSYL-L-HOMOCYSTEINE 1 syn non-polymer 18.015 water 65 nat water methyltransferase no no MRGSHHHHHHGSNIGETLGEKWKSRLNALGKSEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNLV TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGESS PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNPLSRNSTHEMYWVSNASGNIVSS VNMISRMLINRFTMRHKKATYEPDVDLGSGTRNIGIESETPNLDIIGKRIEKIKQEHETSWHYDQ MRGSHHHHHHGSNIGETLGEKWKSRLNALGKSEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNLV TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGESS PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNPLSRNSTHEMYWVSNASGNIVSS VNMISRMLINRFTMRHKKATYEPDVDLGSGTRNIGIESETPNLDIIGKRIEKIKQEHETSWHYDQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Flavivirus Dengue virus 2 Escherichia sample NS5 New Guinea C 11060 Dengue virus 562 Escherichia coli BL21[pREP4] plasmid pQE30 1 2.94 63 VAPOR DIFFUSION, HANGING DROP 5.8 sodium citrate 100mM, lithium sulfate 1.2 M, ammonium sulfate 0.5 M, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Source and taxonomy Version format compliance Database references Derived calculations Data collection 1 0 2003-03-25 1 1 2008-04-28 1 2 2011-07-13 1 3 2021-10-27 1 4 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2002-03-25 REL REL SO4 SULFATE ION SAH S-ADENOSYL-L-HOMOCYSTEINE HOH water SO4 901 2 SO4 SO4 901 A SO4 902 2 SO4 SO4 902 A SO4 903 2 SO4 SO4 903 A SO4 904 2 SO4 SO4 904 A SO4 905 2 SO4 SO4 905 A SAH 887 3 SAH SAH 887 A WAT 1 4 HOH HOH 906 A WAT 2 4 HOH HOH 907 A WAT 3 4 HOH HOH 908 A WAT 4 4 HOH HOH 909 A WAT 5 4 HOH HOH 910 A WAT 6 4 HOH HOH 911 A WAT 7 4 HOH HOH 912 A WAT 8 4 HOH HOH 913 A WAT 9 4 HOH HOH 914 A WAT 10 4 HOH HOH 915 A WAT 11 4 HOH HOH 916 A WAT 12 4 HOH HOH 917 A WAT 13 4 HOH HOH 918 A WAT 14 4 HOH HOH 919 A WAT 15 4 HOH HOH 920 A WAT 16 4 HOH HOH 921 A WAT 17 4 HOH HOH 922 A WAT 18 4 HOH HOH 923 A WAT 19 4 HOH HOH 924 A WAT 20 4 HOH HOH 925 A WAT 21 4 HOH HOH 926 A WAT 22 4 HOH HOH 927 A WAT 23 4 HOH HOH 928 A WAT 24 4 HOH HOH 929 A WAT 25 4 HOH HOH 930 A WAT 26 4 HOH HOH 931 A WAT 27 4 HOH HOH 932 A WAT 28 4 HOH HOH 933 A WAT 29 4 HOH HOH 934 A WAT 30 4 HOH HOH 935 A WAT 31 4 HOH HOH 936 A WAT 32 4 HOH HOH 937 A WAT 33 4 HOH HOH 938 A WAT 34 4 HOH HOH 939 A WAT 35 4 HOH HOH 940 A WAT 36 4 HOH HOH 941 A WAT 37 4 HOH HOH 942 A WAT 38 4 HOH HOH 943 A WAT 39 4 HOH HOH 944 A WAT 40 4 HOH HOH 945 A WAT 41 4 HOH HOH 946 A WAT 42 4 HOH HOH 947 A WAT 43 4 HOH HOH 948 A WAT 44 4 HOH HOH 949 A WAT 45 4 HOH HOH 950 A WAT 46 4 HOH HOH 951 A WAT 47 4 HOH HOH 952 A WAT 48 4 HOH HOH 953 A WAT 49 4 HOH HOH 954 A WAT 50 4 HOH HOH 955 A WAT 51 4 HOH HOH 956 A WAT 52 4 HOH HOH 957 A WAT 53 4 HOH HOH 958 A WAT 54 4 HOH HOH 959 A WAT 55 4 HOH HOH 960 A WAT 56 4 HOH HOH 961 A WAT 57 4 HOH HOH 962 A WAT 58 4 HOH HOH 963 A WAT 59 4 HOH HOH 964 A WAT 60 4 HOH HOH 965 A WAT 61 4 HOH HOH 966 A WAT 62 4 HOH HOH 967 A WAT 63 4 HOH HOH 968 A WAT 64 4 HOH HOH 969 A WAT 65 4 HOH HOH 970 A n 1 -8 A n 2 -7 A n 3 -6 A n 4 -5 A n 5 -4 A n 6 -3 A n 7 -2 A n 8 -1 A n 9 0 A n 10 1 A n 11 2 A n 12 3 A n 13 4 A n 14 5 A n 15 6 A GLU 7 n 16 GLU 7 A THR 8 n 17 THR 8 A LEU 9 n 18 LEU 9 A GLY 10 n 19 GLY 10 A GLU 11 n 20 GLU 11 A LYS 12 n 21 LYS 12 A TRP 13 n 22 TRP 13 A LYS 14 n 23 LYS 14 A SER 15 n 24 SER 15 A ARG 16 n 25 ARG 16 A LEU 17 n 26 LEU 17 A ASN 18 n 27 ASN 18 A ALA 19 n 28 ALA 19 A LEU 20 n 29 LEU 20 A GLY 21 n 30 GLY 21 A LYS 22 n 31 LYS 22 A SER 23 n 32 SER 23 A GLU 24 n 33 GLU 24 A PHE 25 n 34 PHE 25 A GLN 26 n 35 GLN 26 A ILE 27 n 36 ILE 27 A TYR 28 n 37 TYR 28 A LYS 29 n 38 LYS 29 A LYS 30 n 39 LYS 30 A SER 31 n 40 SER 31 A GLY 32 n 41 GLY 32 A ILE 33 n 42 ILE 33 A GLN 34 n 43 GLN 34 A GLU 35 n 44 GLU 35 A VAL 36 n 45 VAL 36 A ASP 37 n 46 ASP 37 A ARG 38 n 47 ARG 38 A THR 39 n 48 THR 39 A LEU 40 n 49 LEU 40 A ALA 41 n 50 ALA 41 A LYS 42 n 51 LYS 42 A GLU 43 n 52 GLU 43 A GLY 44 n 53 GLY 44 A ILE 45 n 54 ILE 45 A LYS 46 n 55 LYS 46 A ARG 47 n 56 ARG 47 A GLY 48 n 57 GLY 48 A GLU 49 n 58 GLU 49 A THR 50 n 59 THR 50 A ASP 51 n 60 ASP 51 A HIS 52 n 61 HIS 52 A HIS 53 n 62 HIS 53 A ALA 54 n 63 ALA 54 A VAL 55 n 64 VAL 55 A SER 56 n 65 SER 56 A ARG 57 n 66 ARG 57 A GLY 58 n 67 GLY 58 A SER 59 n 68 SER 59 A ALA 60 n 69 ALA 60 A LYS 61 n 70 LYS 61 A LEU 62 n 71 LEU 62 A ARG 63 n 72 ARG 63 A TRP 64 n 73 TRP 64 A PHE 65 n 74 PHE 65 A VAL 66 n 75 VAL 66 A GLU 67 n 76 GLU 67 A ARG 68 n 77 ARG 68 A ASN 69 n 78 ASN 69 A LEU 70 n 79 LEU 70 A VAL 71 n 80 VAL 71 A THR 72 n 81 THR 72 A PRO 73 n 82 PRO 73 A GLU 74 n 83 GLU 74 A GLY 75 n 84 GLY 75 A LYS 76 n 85 LYS 76 A VAL 77 n 86 VAL 77 A VAL 78 n 87 VAL 78 A ASP 79 n 88 ASP 79 A LEU 80 n 89 LEU 80 A GLY 81 n 90 GLY 81 A CYS 82 n 91 CYS 82 A GLY 83 n 92 GLY 83 A ARG 84 n 93 ARG 84 A GLY 85 n 94 GLY 85 A GLY 86 n 95 GLY 86 A TRP 87 n 96 TRP 87 A SER 88 n 97 SER 88 A TYR 89 n 98 TYR 89 A TYR 90 n 99 TYR 90 A CYS 91 n 100 CYS 91 A GLY 92 n 101 GLY 92 A GLY 93 n 102 GLY 93 A LEU 94 n 103 LEU 94 A ALA 95 n 104 LYS 95 A ASN 96 n 105 ASN 96 A VAL 97 n 106 VAL 97 A ARG 98 n 107 ARG 98 A GLU 99 n 108 GLU 99 A VAL 100 n 109 VAL 100 A LYS 101 n 110 LYS 101 A GLY 102 n 111 GLY 102 A LEU 103 n 112 LEU 103 A THR 104 n 113 THR 104 A LYS 105 n 114 LYS 105 A GLY 106 n 115 GLY 106 A GLY 107 n 116 GLY 107 A PRO 108 n 117 PRO 108 A GLY 109 n 118 GLY 109 A HIS 110 n 119 HIS 110 A GLU 111 n 120 GLU 111 A GLU 112 n 121 GLU 112 A PRO 113 n 122 PRO 113 A ILE 114 n 123 ILE 114 A PRO 115 n 124 PRO 115 A MET 116 n 125 MET 116 A SER 117 n 126 SER 117 A THR 118 n 127 THR 118 A TYR 119 n 128 TYR 119 A GLY 120 n 129 GLY 120 A TRP 121 n 130 TRP 121 A ASN 122 n 131 ASN 122 A LEU 123 n 132 LEU 123 A VAL 124 n 133 VAL 124 A ARG 125 n 134 ARG 125 A LEU 126 n 135 LEU 126 A GLN 127 n 136 GLN 127 A SER 128 n 137 SER 128 A GLY 129 n 138 GLY 129 A VAL 130 n 139 VAL 130 A ASP 131 n 140 ASP 131 A VAL 132 n 141 VAL 132 A PHE 133 n 142 PHE 133 A PHE 134 n 143 PHE 134 A ILE 135 n 144 ILE 135 A PRO 136 n 145 PRO 136 A PRO 137 n 146 PRO 137 A GLU 138 n 147 GLU 138 A ARG 139 n 148 ARG 139 A CYS 140 n 149 CYS 140 A ASP 141 n 150 ASP 141 A THR 142 n 151 THR 142 A LEU 143 n 152 LEU 143 A LEU 144 n 153 LEU 144 A CYS 145 n 154 CYS 145 A ASP 146 n 155 ASP 146 A ILE 147 n 156 ILE 147 A GLY 148 n 157 GLY 148 A GLU 149 n 158 GLU 149 A SER 150 n 159 SER 150 A SER 151 n 160 SER 151 A PRO 152 n 161 PRO 152 A ASN 153 n 162 ASN 153 A PRO 154 n 163 PRO 154 A THR 155 n 164 THR 155 A VAL 156 n 165 VAL 156 A GLU 157 n 166 GLU 157 A ALA 158 n 167 ALA 158 A GLY 159 n 168 GLY 159 A ARG 160 n 169 ARG 160 A THR 161 n 170 THR 161 A LEU 162 n 171 LEU 162 A ARG 163 n 172 ARG 163 A VAL 164 n 173 VAL 164 A LEU 165 n 174 LEU 165 A ASN 166 n 175 ASN 166 A LEU 167 n 176 LEU 167 A VAL 168 n 177 VAL 168 A GLU 169 n 178 GLU 169 A ASN 170 n 179 ASN 170 A TRP 171 n 180 TRP 171 A LEU 172 n 181 LEU 172 A SER 173 n 182 SER 173 A ASN 174 n 183 ASN 174 A ASN 175 n 184 ASN 175 A THR 176 n 185 THR 176 A GLN 177 n 186 GLN 177 A PHE 178 n 187 PHE 178 A CYS 179 n 188 CYS 179 A VAL 180 n 189 VAL 180 A LYS 181 n 190 LYS 181 A VAL 182 n 191 VAL 182 A LEU 183 n 192 LEU 183 A ASN 184 n 193 ASN 184 A PRO 185 n 194 PRO 185 A TYR 186 n 195 TYR 186 A MET 187 n 196 MET 187 A SER 188 n 197 SER 188 A SER 189 n 198 SER 189 A VAL 190 n 199 VAL 190 A ILE 191 n 200 ILE 191 A GLU 192 n 201 GLU 192 A LYS 193 n 202 LYS 193 A MET 194 n 203 MET 194 A GLU 195 n 204 GLU 195 A ALA 196 n 205 ALA 196 A LEU 197 n 206 LEU 197 A GLN 198 n 207 GLN 198 A ARG 199 n 208 ARG 199 A LYS 200 n 209 LYS 200 A HIS 201 n 210 HIS 201 A GLY 202 n 211 GLY 202 A GLY 203 n 212 GLY 203 A ALA 204 n 213 ALA 204 A LEU 205 n 214 LEU 205 A VAL 206 n 215 VAL 206 A ARG 207 n 216 ARG 207 A ASN 208 n 217 ASN 208 A PRO 209 n 218 PRO 209 A LEU 210 n 219 LEU 210 A SER 211 n 220 SER 211 A ARG 212 n 221 ARG 212 A ASN 213 n 222 ASN 213 A SER 214 n 223 SER 214 A THR 215 n 224 THR 215 A HIS 216 n 225 HIS 216 A GLU 217 n 226 GLU 217 A MET 218 n 227 MET 218 A TYR 219 n 228 TYR 219 A TRP 220 n 229 TRP 220 A VAL 221 n 230 VAL 221 A SER 222 n 231 SER 222 A ASN 223 n 232 ASN 223 A ALA 224 n 233 ALA 224 A SER 225 n 234 SER 225 A GLY 226 n 235 GLY 226 A ASN 227 n 236 ASN 227 A ILE 228 n 237 ILE 228 A VAL 229 n 238 VAL 229 A SER 230 n 239 SER 230 A SER 231 n 240 SER 231 A VAL 232 n 241 VAL 232 A ASN 233 n 242 ASN 233 A MET 234 n 243 MET 234 A ILE 235 n 244 ILE 235 A SER 236 n 245 SER 236 A ARG 237 n 246 ARG 237 A MET 238 n 247 MET 238 A LEU 239 n 248 LEU 239 A ILE 240 n 249 ILE 240 A ASN 241 n 250 ASN 241 A ARG 242 n 251 ARG 242 A PHE 243 n 252 PHE 243 A THR 244 n 253 THR 244 A MET 245 n 254 MET 245 A ARG 246 n 255 ARG 246 A HIS 247 n 256 HIS 247 A LYS 248 n 257 LYS 248 A LYS 249 n 258 LYS 249 A ALA 250 n 259 ALA 250 A THR 251 n 260 THR 251 A TYR 252 n 261 TYR 252 A GLU 253 n 262 GLU 253 A PRO 254 n 263 PRO 254 A ASP 255 n 264 ASP 255 A VAL 256 n 265 VAL 256 A ASP 257 n 266 ASP 257 A LEU 258 n 267 LEU 258 A GLY 259 n 268 GLY 259 A SER 260 n 269 SER 260 A GLY 261 n 270 GLY 261 A THR 262 n 271 THR 262 A ARG 263 n 272 ARG 263 A ASN 264 n 273 ASN 264 A ILE 265 n 274 ILE 265 A GLY 266 n 275 GLY 266 A ILE 267 n 276 ILE 267 A n 277 268 A n 278 269 A n 279 270 A n 280 271 A n 281 272 A n 282 273 A n 283 274 A n 284 275 A n 285 276 A n 286 277 A n 287 278 A n 288 279 A n 289 280 A n 290 281 A n 291 282 A n 292 283 A n 293 284 A n 294 285 A n 295 286 A n 296 287 A n 297 288 A n 298 289 A n 299 290 A n 300 291 A n 301 292 A n 302 293 A n 303 294 A n 304 295 A n 305 296 A author_and_software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 2 dimeric 4930 -161 23710 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 6_555 -x,-x+y,-z+1/3 crystal symmetry operation 0.0000000000 0.0000000000 18.7766666667 A N ASP 37 A N ASP 46 A O GLU 253 A O GLU 262 A O ARG 125 A O ARG 134 A N GLY 102 A N GLY 111 A O GLU 99 A O GLU 108 A N VAL 77 A N VAL 86 A N VAL 78 A N VAL 87 A O LEU 144 A O LEU 153 A N LEU 143 A N LEU 152 A O GLN 177 A O GLN 186 A N VAL 180 A N VAL 189 A O TRP 220 A O TRP 229 A O TYR 219 A O TYR 228 A N VAL 206 A N VAL 215 1 A CG LYS 95 A CG LYS 104 1 Y 1 A CD LYS 95 A CD LYS 104 1 Y 1 A CE LYS 95 A CE LYS 104 1 Y 1 A NZ LYS 95 A NZ LYS 104 1 Y 1 A MET -8 A MET 1 1 Y 1 A ARG -7 A ARG 2 1 Y 1 A GLY -6 A GLY 3 1 Y 1 A SER -5 A SER 4 1 Y 1 A HIS -4 A HIS 5 1 Y 1 A HIS -3 A HIS 6 1 Y 1 A HIS -2 A HIS 7 1 Y 1 A HIS -1 A HIS 8 1 Y 1 A HIS 0 A HIS 9 1 Y 1 A HIS 1 A HIS 10 1 Y 1 A GLY 2 A GLY 11 1 Y 1 A SER 3 A SER 12 1 Y 1 A ASN 4 A ASN 13 1 Y 1 A ILE 5 A ILE 14 1 Y 1 A GLY 6 A GLY 15 1 Y 1 A GLU 268 A GLU 277 1 Y 1 A SER 269 A SER 278 1 Y 1 A GLU 270 A GLU 279 1 Y 1 A THR 271 A THR 280 1 Y 1 A PRO 272 A PRO 281 1 Y 1 A ASN 273 A ASN 282 1 Y 1 A LEU 274 A LEU 283 1 Y 1 A ASP 275 A ASP 284 1 Y 1 A ILE 276 A ILE 285 1 Y 1 A ILE 277 A ILE 286 1 Y 1 A GLY 278 A GLY 287 1 Y 1 A LYS 279 A LYS 288 1 Y 1 A ARG 280 A ARG 289 1 Y 1 A ILE 281 A ILE 290 1 Y 1 A GLU 282 A GLU 291 1 Y 1 A LYS 283 A LYS 292 1 Y 1 A ILE 284 A ILE 293 1 Y 1 A LYS 285 A LYS 294 1 Y 1 A GLN 286 A GLN 295 1 Y 1 A GLU 287 A GLU 296 1 Y 1 A HIS 288 A HIS 297 1 Y 1 A GLU 289 A GLU 298 1 Y 1 A THR 290 A THR 299 1 Y 1 A SER 291 A SER 300 1 Y 1 A TRP 292 A TRP 301 1 Y 1 A HIS 293 A HIS 302 1 Y 1 A TYR 294 A TYR 303 1 Y 1 A ASP 295 A ASP 304 1 Y 1 A GLN 296 A GLN 305 1 Y 1 A A NH2 O ARG HOH 68 925 1.87 1 A A NH2 O ARG HOH 246 966 1.92 1 A A NH2 O ARG HOH 246 953 2.08 1 3.18 0.50 120.30 123.48 A A A NE CZ NH1 ARG ARG ARG 246 246 246 N 1 -3.21 0.50 120.30 117.09 A A A NE CZ NH2 ARG ARG ARG 246 246 246 N 1 A A N OD1 THR ASN 8 264 2.16 1_555 1_556 1 A THR 8 62.39 140.27 1 A HIS 52 73.56 -45.75 1 A ASN 69 56.55 17.43 1 A ASN 175 93.04 25.96 1 A GLU 217 -39.85 124.94 1 A ASN 223 -87.48 48.93 protein_rep.param protein.top dna-rna_rep.param dna-rna.top water_rep.param water.top ion.param ion.top sah.param sah.top 103.94 49.20 29.86 5.92 4.39 0.00 5.92 0.00 -11.84 0.257 0.008 0.231 0.275 0.275 2.40 27.96 945 16049 16035 5.9 99.9 1.00 1.00 random 1 THROUGHOUT 1.0 MAD Engh & Huber CNS bulk solvent model used 36.9147 0.366544 0.35 0.32 5.00 0.37 0.37 2.40 2.40 27.96 65 2158 51 0 2042 0.010 1.4 23.8 0.97 0.307 0.031 0.307 2.51 100 1860 1961 1960 8 5.1 99.9 0.307 0.029 0.306 2.64 113 1865 1985 1978 8 5.7 99.6 0.283 0.026 0.282 2.81 117 1880 1998 1997 8 5.9 99.9 0.251 0.024 0.251 3.02 113 1865 1984 1978 8 5.7 99.7 0.252 0.023 0.252 3.33 120 1881 2006 2001 8 6.0 99.8 0.217 0.020 0.217 3.81 119 1884 2004 2003 8 5.9 100.0 0.193 0.017 0.194 4.79 130 1896 2026 2026 8 6.4 100.0 0.221 0.019 0.22 27.96 133 1959 2097 2092 8 6.3 99.8 50.8 2.40 27.96 1L9K 40 0 40 0 23 0 16248 16035 924791.66 9.000000 1.0 0.0 0.062 0.051 1,2 17.4 5.5 99.8 0.432 2.4 2.53 1.7 2178 0.358 1,2 5.2 99.6 refinement Axel T. Brunger axel.brunger@yale.edu 1998 Fortran CNS package 1.0 data reduction DENZO data scaling CCP4 (SCALA) phasing MLPHARE dengue methyltransferase 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 4 N N A THR 8 A THR 17 HELX_P A LEU 20 A LEU 29 1 1 13 A GLY 21 A GLY 30 HELX_P A LYS 30 A LYS 39 1 2 10 A ARG 38 A ARG 47 HELX_P A GLY 48 A GLY 57 1 3 11 A ARG 57 A ARG 66 HELX_P A GLU 67 A GLU 76 1 4 11 A GLY 85 A GLY 94 HELX_P A GLY 92 A GLY 101 1 5 8 A GLY 120 A GLY 129 HELX_P A ASN 122 A ASN 131 5 6 3 A ASP 131 A ASP 140 HELX_P A ILE 135 A ILE 144 5 7 5 A ASN 153 A ASN 162 HELX_P A ASN 170 A ASN 179 1 8 18 A MET 187 A MET 196 HELX_P A HIS 201 A HIS 210 1 9 15 A ASN 227 A ASN 236 HELX_P A ARG 242 A ARG 251 1 10 16 TRANSFERASE methyltransferase fold, complex with s-adenosyl-l-homocysteine, TRANSFERASE POLG_DEN2P UNP 1 2492 P12823 NIGETLGEKWKSRLNALGKSEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNLVTPEGKVVDLGCG RGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFVPPEKCDTLLCDIGESSPNPTVEAGRTLR VLNLVENWLNNNTQFCVKVLNPYMPSVIERMETLQRKYGGALVRNPLSRNSTHEMYWVSNASGNIVSSVNMISRMLINRF TMRHKKATYEPDVDLGSGTRNIGIESETPNLDIIGKRIEKIKQEHETSWHYDQ 2492 2784 1L9K 4 296 P12823 A 1 13 305 1 expression tag MET -8 1L9K A P12823 UNP 1 1 expression tag ARG -7 1L9K A P12823 UNP 2 1 expression tag GLY -6 1L9K A P12823 UNP 3 1 expression tag SER -5 1L9K A P12823 UNP 4 1 expression tag HIS -4 1L9K A P12823 UNP 5 1 expression tag HIS -3 1L9K A P12823 UNP 6 1 expression tag HIS -2 1L9K A P12823 UNP 7 1 expression tag HIS -1 1L9K A P12823 UNP 8 1 expression tag HIS 0 1L9K A P12823 UNP 9 1 expression tag HIS 1 1L9K A P12823 UNP 10 1 expression tag GLY 2 1L9K A P12823 UNP 11 1 expression tag SER 3 1L9K A P12823 UNP 12 1 VAL engineered mutation ILE 135 1L9K A P12823 UNP 2623 144 1 LYS engineered mutation ARG 139 1L9K A P12823 UNP 2627 148 1 ASN engineered mutation SER 173 1L9K A P12823 UNP 2661 182 1 PRO engineered mutation SER 188 1L9K A P12823 UNP 2676 197 1 ARG engineered mutation LYS 193 1L9K A P12823 UNP 2681 202 1 THR engineered mutation ALA 196 1L9K A P12823 UNP 2684 205 1 TYR engineered mutation HIS 201 1L9K A P12823 UNP 2689 210 2 7 parallel parallel parallel parallel parallel anti-parallel anti-parallel A GLN 34 A GLN 43 A ASP 37 A ASP 46 A THR 251 A THR 260 A PRO 254 A PRO 263 A VAL 124 A VAL 133 A GLN 127 A GLN 136 A VAL 97 A VAL 106 A LEU 103 A LEU 112 A GLY 75 A GLY 84 A LEU 80 A LEU 89 A THR 142 A THR 151 A CYS 145 A CYS 154 A GLN 177 A GLN 186 A VAL 182 A VAL 191 A MET 218 A MET 227 A VAL 221 A VAL 230 A ALA 204 A ALA 213 A VAL 206 A VAL 215 BINDING SITE FOR RESIDUE SO4 A 901 A SO4 901 Software 4 BINDING SITE FOR RESIDUE SO4 A 902 A SO4 902 Software 5 BINDING SITE FOR RESIDUE SO4 A 903 A SO4 903 Software 4 BINDING SITE FOR RESIDUE SO4 A 904 A SO4 904 Software 6 BINDING SITE FOR RESIDUE SO4 A 905 A SO4 905 Software 4 BINDING SITE FOR RESIDUE SAH A 887 A SAH 887 Software 17 A ARG 38 A ARG 47 4 1_555 A LYS 42 A LYS 51 4 1_555 A ARG 57 A ARG 66 4 1_555 A ARG 84 A ARG 93 4 1_555 A LYS 105 A LYS 114 5 1_555 A HIS 110 A HIS 119 5 1_555 A SER 150 A SER 159 5 6_555 A SER 151 A SER 160 5 6_555 A ARG 160 A ARG 169 5 6_555 A GLY 109 A GLY 118 4 1_555 A HIS 110 A HIS 119 4 1_555 A GLU 111 A GLU 120 4 1_555 A SAH 887 G SAH 4 1_555 A LYS 29 A LYS 38 6 1_555 A ARG 57 A ARG 66 6 1_555 A ARG 212 A ARG 221 6 1_555 A HOH 951 H HOH 6 1_555 A HOH 962 H HOH 6 1_555 A HOH 967 H HOH 6 1_555 A LYS 29 A LYS 38 4 1_555 A LYS 30 A LYS 39 4 1_555 A ARG 57 A ARG 66 4 1_555 A ARG 212 A ARG 221 4 1_555 A SER 56 A SER 65 17 1_555 A GLY 58 A GLY 67 17 1_555 A GLY 81 A GLY 90 17 1_555 A CYS 82 A CYS 91 17 1_555 A GLY 85 A GLY 94 17 1_555 A GLY 86 A GLY 95 17 1_555 A TRP 87 A TRP 96 17 1_555 A THR 104 A THR 113 17 1_555 A LYS 105 A LYS 114 17 1_555 A GLU 111 A GLU 120 17 1_555 A VAL 130 A VAL 139 17 1_555 A ASP 131 A ASP 140 17 1_555 A VAL 132 A VAL 141 17 1_555 A PHE 133 A PHE 142 17 1_555 A ASP 146 A ASP 155 17 1_555 A SO4 903 D SO4 17 1_555 A HOH 940 H HOH 17 1_555 152 P 31 2 1