0.022696
0.000000
0.000000
0.000000
0.011515
0.000000
0.000000
0.000000
0.028129
0.00000
0.00000
0.00000
CIS PROLINE - PRO 17
Ishikawa, K.
Nakamura, H.
Morikawa, K.
Kanaya, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
44.060
86.840
35.550
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
32
6171
6178
10.1021/bi00075a009
8390295
Stabilization of Escherichia coli ribonuclease HI by cavity-filling mutations within a hydrophobic core.
1993
UK
Protein Eng.
PRENE9
0859
0269-2139
6
85
Structural Study of Mutants of Escherichia Coli Ribonuclease Hi with Enhanced Thermostability
1993
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
223
1029
Structural Details of Ribonuclease H from Escherichia Coli as Refined at an Atomic Resolution
1992
UK
Nature
NATUAS
0006
0028-0836
347
306
Three-Dimensional Structure of Ribonuclease H from E. Coli
1990
10.2210/pdb1law/pdb
pdb_00001law
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
17637.025
RIBONUCLEASE H
3.1.26.4
1
man
polymer
18.015
water
111
nat
water
no
no
MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYIRQGITQ
WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV
MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYIRQGITQ
WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
562
Escherichia coli
1.93
36.19
pdbx_database_status
struct_conf
struct_conf_type
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Data collection
Database references
1
0
1993-10-31
1
1
2008-03-03
1
2
2011-07-13
1
3
2017-11-29
1
4
2024-02-14
_pdbx_database_status.process_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
SHEET
THE STRANDS IN THE SHEET RECORD BELOW ARE DEFINED AS
FOLLOWS IN THE PAPER (KATAYANAGI ET AL. NATURE (1990)
VOL. 347, PP. 306-309).
STRAND 1 (RIGHT ARROW) BETA C
STRAND 2 (RIGHT ARROW) BETA B
STRAND 3 (RIGHT ARROW) BETA A
STRAND 4 (RIGHT ARROW) BETA D
STRAND 5 (RIGHT ARROW) BETA E
Y
BNL
1993-05-10
REL
HOH
water
HOH
156
2
HOH
HOH
156
A
HOH
157
2
HOH
HOH
157
A
HOH
158
2
HOH
HOH
158
A
HOH
159
2
HOH
HOH
159
A
HOH
161
2
HOH
HOH
161
A
HOH
162
2
HOH
HOH
162
A
HOH
164
2
HOH
HOH
164
A
HOH
165
2
HOH
HOH
165
A
HOH
166
2
HOH
HOH
166
A
HOH
168
2
HOH
HOH
168
A
HOH
169
2
HOH
HOH
169
A
HOH
170
2
HOH
HOH
170
A
HOH
172
2
HOH
HOH
172
A
HOH
173
2
HOH
HOH
173
A
HOH
174
2
HOH
HOH
174
A
HOH
175
2
HOH
HOH
175
A
HOH
176
2
HOH
HOH
176
A
HOH
177
2
HOH
HOH
177
A
HOH
179
2
HOH
HOH
179
A
HOH
180
2
HOH
HOH
180
A
HOH
183
2
HOH
HOH
183
A
HOH
184
2
HOH
HOH
184
A
HOH
185
2
HOH
HOH
185
A
HOH
186
2
HOH
HOH
186
A
HOH
187
2
HOH
HOH
187
A
HOH
188
2
HOH
HOH
188
A
HOH
191
2
HOH
HOH
191
A
HOH
192
2
HOH
HOH
192
A
HOH
193
2
HOH
HOH
193
A
HOH
194
2
HOH
HOH
194
A
HOH
195
2
HOH
HOH
195
A
HOH
196
2
HOH
HOH
196
A
HOH
199
2
HOH
HOH
199
A
HOH
200
2
HOH
HOH
200
A
HOH
201
2
HOH
HOH
201
A
HOH
202
2
HOH
HOH
202
A
HOH
204
2
HOH
HOH
204
A
HOH
205
2
HOH
HOH
205
A
HOH
206
2
HOH
HOH
206
A
HOH
208
2
HOH
HOH
208
A
HOH
209
2
HOH
HOH
209
A
HOH
210
2
HOH
HOH
210
A
HOH
211
2
HOH
HOH
211
A
HOH
212
2
HOH
HOH
212
A
HOH
213
2
HOH
HOH
213
A
HOH
214
2
HOH
HOH
214
A
HOH
215
2
HOH
HOH
215
A
HOH
216
2
HOH
HOH
216
A
HOH
218
2
HOH
HOH
218
A
HOH
219
2
HOH
HOH
219
A
HOH
220
2
HOH
HOH
220
A
HOH
222
2
HOH
HOH
222
A
HOH
224
2
HOH
HOH
224
A
HOH
225
2
HOH
HOH
225
A
HOH
226
2
HOH
HOH
226
A
HOH
227
2
HOH
HOH
227
A
HOH
228
2
HOH
HOH
228
A
HOH
229
2
HOH
HOH
229
A
HOH
231
2
HOH
HOH
231
A
HOH
232
2
HOH
HOH
232
A
HOH
234
2
HOH
HOH
234
A
HOH
235
2
HOH
HOH
235
A
HOH
236
2
HOH
HOH
236
A
HOH
237
2
HOH
HOH
237
A
HOH
239
2
HOH
HOH
239
A
HOH
240
2
HOH
HOH
240
A
HOH
241
2
HOH
HOH
241
A
HOH
243
2
HOH
HOH
243
A
HOH
245
2
HOH
HOH
245
A
HOH
246
2
HOH
HOH
246
A
HOH
250
2
HOH
HOH
250
A
HOH
251
2
HOH
HOH
251
A
HOH
252
2
HOH
HOH
252
A
HOH
253
2
HOH
HOH
253
A
HOH
255
2
HOH
HOH
255
A
HOH
256
2
HOH
HOH
256
A
HOH
301
2
HOH
HOH
301
A
HOH
302
2
HOH
HOH
302
A
HOH
303
2
HOH
HOH
303
A
HOH
304
2
HOH
HOH
304
A
HOH
305
2
HOH
HOH
305
A
HOH
306
2
HOH
HOH
306
A
HOH
307
2
HOH
HOH
307
A
HOH
308
2
HOH
HOH
308
A
HOH
309
2
HOH
HOH
309
A
HOH
310
2
HOH
HOH
310
A
HOH
311
2
HOH
HOH
311
A
HOH
312
2
HOH
HOH
312
A
HOH
313
2
HOH
HOH
313
A
HOH
314
2
HOH
HOH
314
A
HOH
315
2
HOH
HOH
315
A
HOH
316
2
HOH
HOH
316
A
HOH
317
2
HOH
HOH
317
A
HOH
318
2
HOH
HOH
318
A
HOH
319
2
HOH
HOH
319
A
HOH
320
2
HOH
HOH
320
A
HOH
321
2
HOH
HOH
321
A
HOH
322
2
HOH
HOH
322
A
HOH
323
2
HOH
HOH
323
A
HOH
324
2
HOH
HOH
324
A
HOH
325
2
HOH
HOH
325
A
HOH
326
2
HOH
HOH
326
A
HOH
327
2
HOH
HOH
327
A
HOH
328
2
HOH
HOH
328
A
HOH
329
2
HOH
HOH
329
A
HOH
330
2
HOH
HOH
330
A
HOH
331
2
HOH
HOH
331
A
HOH
332
2
HOH
HOH
332
A
HOH
333
2
HOH
HOH
333
A
HOH
334
2
HOH
HOH
334
A
HOH
335
2
HOH
HOH
335
A
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
LYS
3
n
3
LYS
3
A
GLN
4
n
4
GLN
4
A
VAL
5
n
5
VAL
5
A
GLU
6
n
6
GLU
6
A
ILE
7
n
7
ILE
7
A
PHE
8
n
8
PHE
8
A
THR
9
n
9
THR
9
A
ASP
10
n
10
ASP
10
A
GLY
11
n
11
GLY
11
A
SER
12
n
12
SER
12
A
CYS
13
n
13
CYS
13
A
LEU
14
n
14
LEU
14
A
GLY
15
n
15
GLY
15
A
ASN
16
n
16
ASN
16
A
PRO
17
n
17
PRO
17
A
GLY
18
n
18
GLY
18
A
PRO
19
n
19
PRO
19
A
GLY
20
n
20
GLY
20
A
GLY
21
n
21
GLY
21
A
TYR
22
n
22
TYR
22
A
GLY
23
n
23
GLY
23
A
ALA
24
n
24
ALA
24
A
ILE
25
n
25
ILE
25
A
LEU
26
n
26
LEU
26
A
ARG
27
n
27
ARG
27
A
TYR
28
n
28
TYR
28
A
ARG
29
n
29
ARG
29
A
GLY
30
n
30
GLY
30
A
ARG
31
n
31
ARG
31
A
GLU
32
n
32
GLU
32
A
LYS
33
n
33
LYS
33
A
THR
34
n
34
THR
34
A
PHE
35
n
35
PHE
35
A
SER
36
n
36
SER
36
A
ALA
37
n
37
ALA
37
A
GLY
38
n
38
GLY
38
A
TYR
39
n
39
TYR
39
A
THR
40
n
40
THR
40
A
ARG
41
n
41
ARG
41
A
THR
42
n
42
THR
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
ASN
45
n
45
ASN
45
A
ARG
46
n
46
ARG
46
A
MET
47
n
47
MET
47
A
GLU
48
n
48
GLU
48
A
LEU
49
n
49
LEU
49
A
MET
50
n
50
MET
50
A
ALA
51
n
51
ALA
51
A
ALA
52
n
52
ALA
52
A
ILE
53
n
53
ILE
53
A
VAL
54
n
54
VAL
54
A
ALA
55
n
55
ALA
55
A
LEU
56
n
56
LEU
56
A
GLU
57
n
57
GLU
57
A
ALA
58
n
58
ALA
58
A
LEU
59
n
59
LEU
59
A
LYS
60
n
60
LYS
60
A
GLU
61
n
61
GLU
61
A
HIS
62
n
62
HIS
62
A
CYS
63
n
63
CYS
63
A
GLU
64
n
64
GLU
64
A
VAL
65
n
65
VAL
65
A
ILE
66
n
66
ILE
66
A
LEU
67
n
67
LEU
67
A
SER
68
n
68
SER
68
A
THR
69
n
69
THR
69
A
ASP
70
n
70
ASP
70
A
SER
71
n
71
SER
71
A
GLN
72
n
72
GLN
72
A
TYR
73
n
73
TYR
73
A
ILE
74
n
74
ILE
74
A
ARG
75
n
75
ARG
75
A
GLN
76
n
76
GLN
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
THR
79
n
79
THR
79
A
GLN
80
n
80
GLN
80
A
TRP
81
n
81
TRP
81
A
ILE
82
n
82
ILE
82
A
HIS
83
n
83
HIS
83
A
ASN
84
n
84
ASN
84
A
TRP
85
n
85
TRP
85
A
LYS
86
n
86
LYS
86
A
LYS
87
n
87
LYS
87
A
ARG
88
n
88
ARG
88
A
GLY
89
n
89
GLY
89
A
TRP
90
n
90
TRP
90
A
LYS
91
n
91
LYS
91
A
THR
92
n
92
THR
92
A
ALA
93
n
93
ALA
93
A
ASP
94
n
94
ASP
94
A
LYS
95
n
95
LYS
95
A
LYS
96
n
96
LYS
96
A
PRO
97
n
97
PRO
97
A
VAL
98
n
98
VAL
98
A
LYS
99
n
99
LYS
99
A
ASN
100
n
100
ASN
100
A
VAL
101
n
101
VAL
101
A
ASP
102
n
102
ASP
102
A
LEU
103
n
103
LEU
103
A
TRP
104
n
104
TRP
104
A
GLN
105
n
105
GLN
105
A
ARG
106
n
106
ARG
106
A
LEU
107
n
107
LEU
107
A
ASP
108
n
108
ASP
108
A
ALA
109
n
109
ALA
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
GLY
112
n
112
GLY
112
A
GLN
113
n
113
GLN
113
A
HIS
114
n
114
HIS
114
A
GLN
115
n
115
GLN
115
A
ILE
116
n
116
ILE
116
A
LYS
117
n
117
LYS
117
A
TRP
118
n
118
TRP
118
A
GLU
119
n
119
GLU
119
A
TRP
120
n
120
TRP
120
A
VAL
121
n
121
VAL
121
A
LYS
122
n
122
LYS
122
A
GLY
123
n
123
GLY
123
A
HIS
124
n
124
HIS
124
A
ALA
125
n
125
ALA
125
A
GLY
126
n
126
GLY
126
A
HIS
127
n
127
HIS
127
A
PRO
128
n
128
PRO
128
A
GLU
129
n
129
GLU
129
A
ASN
130
n
130
ASN
130
A
GLU
131
n
131
GLU
131
A
ARG
132
n
132
ARG
132
A
CYS
133
n
133
CYS
133
A
ASP
134
n
134
ASP
134
A
GLU
135
n
135
GLU
135
A
LEU
136
n
136
LEU
136
A
ALA
137
n
137
ALA
137
A
ARG
138
n
138
ARG
138
A
ALA
139
n
139
ALA
139
A
ALA
140
n
140
ALA
140
A
ALA
141
n
141
ALA
141
A
MET
142
n
142
MET
142
A
ASN
143
n
143
ASN
143
A
PRO
144
n
144
PRO
144
A
THR
145
n
145
THR
145
A
LEU
146
n
146
LEU
146
A
GLU
147
n
147
GLU
147
A
ASP
148
n
148
ASP
148
A
THR
149
n
149
THR
149
A
GLY
150
n
150
GLY
150
A
TYR
151
n
151
TYR
151
A
GLN
152
n
152
GLN
152
A
VAL
153
n
153
VAL
153
A
GLU
154
n
154
GLU
154
A
VAL
155
n
155
VAL
155
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
31
A
N
ARG
31
A
O
TYR
28
A
O
TYR
28
A
O
ARG
27
A
O
ARG
27
A
N
GLU
6
A
N
GLU
6
A
N
VAL
5
A
N
VAL
5
A
O
GLU
64
A
O
GLU
64
A
O
CYS
63
A
O
CYS
63
A
N
GLN
115
A
N
GLN
115
1
5.80
0.50
120.30
126.10
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
27
27
27
N
1
-4.58
0.50
120.30
115.72
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
27
27
27
N
1
11.24
1.40
123.60
134.84
A
A
A
CD
NE
CZ
ARG
ARG
ARG
29
29
29
N
1
4.98
0.50
120.30
125.28
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
29
29
29
N
1
3.92
0.50
120.30
124.22
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
1
-4.33
0.50
120.30
115.97
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
31
31
31
N
1
9.28
1.40
123.60
132.88
A
A
A
CD
NE
CZ
ARG
ARG
ARG
46
46
46
N
1
7.88
0.50
120.30
128.18
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
46
46
46
N
1
-3.11
0.50
120.30
117.19
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
46
46
46
N
1
7.77
1.20
123.30
131.07
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
48
48
48
N
1
-3.67
0.50
120.30
116.63
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
106
106
106
N
1
13.70
2.10
111.80
125.50
A
A
A
CG
CD
NE
ARG
ARG
ARG
138
138
138
N
1
17.15
1.40
123.60
140.75
A
A
A
CD
NE
CZ
ARG
ARG
ARG
138
138
138
N
1
3.64
0.50
120.30
123.94
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
138
138
138
N
1
19.80
2.50
121.70
141.50
A
A
A
C
N
CA
VAL
GLU
GLU
153
154
154
Y
1
A
ARG
29
69.41
-110.18
1
A
ALA
125
-149.11
44.12
1
A
ASN
143
-151.99
65.20
1
A
GLU
154
-56.24
-122.53
0.1880000
1.8
6.0
9916
1
1.0
1.8
6.0
111
1350
0
0
1239
0.015
0.020
0.034
0.030
0.048
0.050
1.166
1.500
1.823
2.000
2.026
2.000
3.014
2.500
0.013
0.020
0.164
0.150
0.190
0.300
0.197
0.300
0.246
0.300
2.3
3.0
19.3
15.0
29.1
20.0
refinement
PROLSQ
STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY CAVITY-FILLING MUTATIONS WITHIN A HYDROPHOBIC CORE
1
N
N
2
N
N
A
THR
43
A
THR
43
HELX_P
A
ALA
58
A
ALA
58
1
A1
16
A
ALA
55
A
ALA
55
HELX_P
A
LEU
59
A
LEU
59
5
B1
5
A
SER
71
A
SER
71
HELX_P
A
THR
79
A
THR
79
1
A2
9
A
TRP
81
A
TRP
81
HELX_P
A
GLY
89
A
GLY
89
1
A3
9
A
ASN
100
A
ASN
100
HELX_P
A
GLY
112
A
GLY
112
1
A4
13
A
ALA
110
A
ALA
110
HELX_P
A
HIS
114
A
HIS
114
5
B2
5
A
HIS
127
A
HIS
127
HELX_P
A
ALA
141
A
ALA
141
1
A5
15
A
ARG
138
A
ARG
138
HELX_P
A
ASN
143
A
ASN
143
5
B3
6
HYDROLASE
HYDROLASE
A
ASN
16
A
ASN
16
1
A
PRO
17
A
PRO
17
0.64
RNH_ECOLI
UNP
1
1
P0A7Y4
MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQ
WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV
1
155
1LAW
1
155
P0A7Y4
A
1
1
155
1
VAL
conflict
ILE
74
1LAW
A
P0A7Y4
UNP
74
74
5
anti-parallel
anti-parallel
parallel
parallel
A
ARG
31
A
ARG
31
A
TYR
39
A
TYR
39
A
PRO
19
A
PRO
19
A
TYR
28
A
TYR
28
A
VAL
5
A
VAL
5
A
LEU
14
A
LEU
14
A
CYS
63
A
CYS
63
A
THR
69
A
THR
69
A
GLN
115
A
GLN
115
A
VAL
121
A
VAL
121
Unknown
3
A
ASP
10
A
ASP
10
3
1_555
A
GLU
48
A
GLU
48
3
1_555
A
ASP
70
A
ASP
70
3
1_555
19
P 21 21 21