0.026323
0.000000
0.000000
0.000000
0.022227
0.000000
0.000000
0.000000
0.009387
0.00000
0.00000
0.00000
Ye, H.
Arron, J.R.
Lamothe, B.
Cirilli, M.
Kobayashi, T.
Shevde, N.K.
Segal, D.
Dzivenu, O.
Vologodskaia, M.
Yim, M.
Du, K.
Singh, S.
Pike, J.W.
Darnay, B.G.
Choi, Y.
Wu, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
37.990
44.991
106.535
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Nature
NATUAS
0006
0028-0836
418
443
447
10.1038/nature00888
12140561
Distinct molecular mechanism for initiating TRAF6 signalling.
2002
10.2210/pdb1lb5/pdb
pdb_00001lb5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-09-21
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.0
X4A
NSLS
SYNCHROTRON
NSLS BEAMLINE X4A
18676.549
TNF receptor-associated factor 6
residues 347-504
1
man
polymer
1012.048
receptor activator of nuclear factor-kappa B
residues 342-349
1
man
polymer
18.015
water
79
nat
water
no
no
QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF
QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDLE
QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF
QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDLE
A
polypeptide(L)
no
no
QMPTEDEY
QMPTEDEY
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
TRAF6
9606
Homo sapiens
562
Escherichia coli
human
Homo
Escherichia
sample
RANK
9606
Homo sapiens
562
Escherichia coli
1
2.31
46.77
VAPOR DIFFUSION, HANGING DROP
7.5
PEG8000, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Refinement description
1
0
2002-07-31
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
1
4
2024-02-14
1
5
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
TRAF6 apo structure
TRAF6-CD40 complex
RCSB
Y
RCSB
2002-04-02
REL
HOH
water
TRAF6 apo form
Other
experimental model
TIP
801
3
HOH
HOH
801
A
TIP
802
3
HOH
HOH
802
A
TIP
803
3
HOH
HOH
803
A
TIP
804
3
HOH
HOH
804
A
TIP
805
3
HOH
HOH
805
A
TIP
806
3
HOH
HOH
806
A
TIP
807
3
HOH
HOH
807
A
TIP
808
3
HOH
HOH
808
A
TIP
809
3
HOH
HOH
809
A
TIP
810
3
HOH
HOH
810
A
TIP
811
3
HOH
HOH
811
A
TIP
812
3
HOH
HOH
812
A
TIP
813
3
HOH
HOH
813
A
TIP
814
3
HOH
HOH
814
A
TIP
815
3
HOH
HOH
815
A
TIP
816
3
HOH
HOH
816
A
TIP
817
3
HOH
HOH
817
A
TIP
818
3
HOH
HOH
818
A
TIP
819
3
HOH
HOH
819
A
TIP
820
3
HOH
HOH
820
A
TIP
822
3
HOH
HOH
822
A
TIP
823
3
HOH
HOH
823
A
TIP
824
3
HOH
HOH
824
A
TIP
825
3
HOH
HOH
825
A
TIP
827
3
HOH
HOH
827
A
TIP
828
3
HOH
HOH
828
A
TIP
829
3
HOH
HOH
829
A
TIP
831
3
HOH
HOH
831
A
TIP
832
3
HOH
HOH
832
A
TIP
833
3
HOH
HOH
833
A
TIP
834
3
HOH
HOH
834
A
TIP
835
3
HOH
HOH
835
A
TIP
836
3
HOH
HOH
836
A
TIP
837
3
HOH
HOH
837
A
TIP
838
3
HOH
HOH
838
A
TIP
839
3
HOH
HOH
839
A
TIP
840
3
HOH
HOH
840
A
TIP
841
3
HOH
HOH
841
A
TIP
842
3
HOH
HOH
842
A
TIP
843
3
HOH
HOH
843
A
TIP
844
3
HOH
HOH
844
A
TIP
845
3
HOH
HOH
845
A
TIP
846
3
HOH
HOH
846
A
TIP
847
3
HOH
HOH
847
A
TIP
848
3
HOH
HOH
848
A
TIP
849
3
HOH
HOH
849
A
TIP
850
3
HOH
HOH
850
A
TIP
852
3
HOH
HOH
852
A
TIP
854
3
HOH
HOH
854
A
TIP
855
3
HOH
HOH
855
A
TIP
856
3
HOH
HOH
856
A
TIP
857
3
HOH
HOH
857
A
TIP
858
3
HOH
HOH
858
A
TIP
859
3
HOH
HOH
859
A
TIP
860
3
HOH
HOH
860
A
TIP
861
3
HOH
HOH
861
A
TIP
862
3
HOH
HOH
862
A
TIP
863
3
HOH
HOH
863
A
TIP
864
3
HOH
HOH
864
A
TIP
865
3
HOH
HOH
865
A
TIP
866
3
HOH
HOH
866
A
TIP
868
3
HOH
HOH
868
A
TIP
869
3
HOH
HOH
869
A
TIP
870
3
HOH
HOH
870
A
TIP
871
3
HOH
HOH
871
A
TIP
872
3
HOH
HOH
872
A
TIP
873
3
HOH
HOH
873
A
TIP
874
3
HOH
HOH
874
A
TIP
875
3
HOH
HOH
875
A
TIP
876
3
HOH
HOH
876
A
TIP
877
3
HOH
HOH
877
A
TIP
878
3
HOH
HOH
878
A
TIP
879
3
HOH
HOH
879
A
TIP
880
3
HOH
HOH
880
A
TIP
821
3
HOH
HOH
821
B
TIP
830
3
HOH
HOH
830
B
TIP
851
3
HOH
HOH
851
B
TIP
853
3
HOH
HOH
853
B
TIP
867
3
HOH
HOH
867
B
ALA
347
n
1
GLN
347
A
GLN
348
n
2
GLN
348
A
CYS
349
n
3
CYS
349
A
ASN
350
n
4
ASN
350
A
GLY
351
n
5
GLY
351
A
ILE
352
n
6
ILE
352
A
TYR
353
n
7
TYR
353
A
ILE
354
n
8
ILE
354
A
TRP
355
n
9
TRP
355
A
LYS
356
n
10
LYS
356
A
ILE
357
n
11
ILE
357
A
GLY
358
n
12
GLY
358
A
ASN
359
n
13
ASN
359
A
PHE
360
n
14
PHE
360
A
GLY
361
n
15
GLY
361
A
MET
362
n
16
MET
362
A
HIS
363
n
17
HIS
363
A
LEU
364
n
18
LEU
364
A
LYS
365
n
19
LYS
365
A
CYS
366
n
20
CYS
366
A
GLN
367
n
21
GLN
367
A
GLU
368
n
22
GLU
368
A
GLU
369
n
23
GLU
369
A
GLU
370
n
24
GLU
370
A
LYS
371
n
25
LYS
371
A
PRO
372
n
26
PRO
372
A
VAL
373
n
27
VAL
373
A
VAL
374
n
28
VAL
374
A
ILE
375
n
29
ILE
375
A
HIS
376
n
30
HIS
376
A
SER
377
n
31
SER
377
A
PRO
378
n
32
PRO
378
A
GLY
379
n
33
GLY
379
A
PHE
380
n
34
PHE
380
A
TYR
381
n
35
TYR
381
A
THR
382
n
36
THR
382
A
GLY
383
n
37
GLY
383
A
LYS
384
n
38
LYS
384
A
PRO
385
n
39
PRO
385
A
GLY
386
n
40
GLY
386
A
TYR
387
n
41
TYR
387
A
LYS
388
n
42
LYS
388
A
LEU
389
n
43
LEU
389
A
CYS
390
n
44
CYS
390
A
MET
391
n
45
MET
391
A
ARG
392
n
46
ARG
392
A
LEU
393
n
47
LEU
393
A
HIS
394
n
48
HIS
394
A
LEU
395
n
49
LEU
395
A
GLN
396
n
50
GLN
396
A
LEU
397
n
51
LEU
397
A
PRO
398
n
52
PRO
398
A
THR
399
n
53
THR
399
A
ALA
400
n
54
ALA
400
A
GLN
401
n
55
GLN
401
A
ARG
402
n
56
ARG
402
A
CYS
403
n
57
CYS
403
A
ALA
404
n
58
ALA
404
A
ASN
405
n
59
ASN
405
A
TYR
406
n
60
TYR
406
A
ILE
407
n
61
ILE
407
A
SER
408
n
62
SER
408
A
LEU
409
n
63
LEU
409
A
PHE
410
n
64
PHE
410
A
VAL
411
n
65
VAL
411
A
HIS
412
n
66
HIS
412
A
THR
413
n
67
THR
413
A
MET
414
n
68
MET
414
A
GLN
415
n
69
GLN
415
A
GLY
416
n
70
GLY
416
A
GLU
417
n
71
GLU
417
A
TYR
418
n
72
TYR
418
A
ASP
419
n
73
ASP
419
A
SER
420
n
74
SER
420
A
HIS
421
n
75
HIS
421
A
LEU
422
n
76
LEU
422
A
PRO
423
n
77
PRO
423
A
TRP
424
n
78
TRP
424
A
PRO
425
n
79
PRO
425
A
PHE
426
n
80
PHE
426
A
GLN
427
n
81
GLN
427
A
GLY
428
n
82
GLY
428
A
THR
429
n
83
THR
429
A
ILE
430
n
84
ILE
430
A
ARG
431
n
85
ARG
431
A
LEU
432
n
86
LEU
432
A
THR
433
n
87
THR
433
A
ILE
434
n
88
ILE
434
A
LEU
435
n
89
LEU
435
A
ASP
436
n
90
ASP
436
A
GLN
437
n
91
GLN
437
A
SER
438
n
92
SER
438
A
GLU
439
n
93
GLU
439
A
ALA
440
n
94
ALA
440
A
PRO
441
n
95
PRO
441
A
VAL
442
n
96
VAL
442
A
ARG
443
n
97
ARG
443
A
GLN
444
n
98
GLN
444
A
ASN
445
n
99
ASN
445
A
HIS
446
n
100
HIS
446
A
GLU
447
n
101
GLU
447
A
GLU
448
n
102
GLU
448
A
ILE
449
n
103
ILE
449
A
MET
450
n
104
MET
450
A
ASP
451
n
105
ASP
451
A
ALA
452
n
106
ALA
452
A
LYS
453
n
107
LYS
453
A
PRO
454
n
108
PRO
454
A
GLU
455
n
109
GLU
455
A
LEU
456
n
110
LEU
456
A
LEU
457
n
111
LEU
457
A
ALA
458
n
112
ALA
458
A
PHE
459
n
113
PHE
459
A
GLN
460
n
114
GLN
460
A
ARG
461
n
115
ARG
461
A
PRO
462
n
116
PRO
462
A
THR
463
n
117
THR
463
A
ILE
464
n
118
ILE
464
A
PRO
465
n
119
PRO
465
A
ARG
466
n
120
ARG
466
A
ASN
467
n
121
ASN
467
A
PRO
468
n
122
PRO
468
A
LYS
469
n
123
LYS
469
A
GLY
470
n
124
GLY
470
A
PHE
471
n
125
PHE
471
A
GLY
472
n
126
GLY
472
A
TYR
473
n
127
TYR
473
A
VAL
474
n
128
VAL
474
A
THR
475
n
129
THR
475
A
PHE
476
n
130
PHE
476
A
MET
477
n
131
MET
477
A
HIS
478
n
132
HIS
478
A
LEU
479
n
133
LEU
479
A
GLU
480
n
134
GLU
480
A
ALA
481
n
135
ALA
481
A
LEU
482
n
136
LEU
482
A
ARG
483
n
137
ARG
483
A
GLN
484
n
138
GLN
484
A
ARG
485
n
139
ARG
485
A
THR
486
n
140
THR
486
A
PHE
487
n
141
PHE
487
A
ILE
488
n
142
ILE
488
A
LYS
489
n
143
LYS
489
A
ASP
490
n
144
ASP
490
A
ASP
491
n
145
ASP
491
A
THR
492
n
146
THR
492
A
LEU
493
n
147
LEU
493
A
LEU
494
n
148
LEU
494
A
VAL
495
n
149
VAL
495
A
ARG
496
n
150
ARG
496
A
CYS
497
n
151
CYS
497
A
GLU
498
n
152
GLU
498
A
VAL
499
n
153
VAL
499
A
SER
500
n
154
SER
500
A
THR
501
n
155
THR
501
A
n
156
502
A
n
157
503
A
n
158
504
A
n
159
505
A
n
160
506
A
GLN
601
n
1
GLN
601
B
MET
602
n
2
MET
602
B
PRO
603
n
3
PRO
603
B
THR
604
n
4
THR
604
B
GLU
605
n
5
GLU
605
B
ASP
606
n
6
ASP
606
B
GLU
607
n
7
GLU
607
B
TYR
608
n
8
TYR
608
B
author_and_software_defined_assembly
PISA
2
dimeric
1120
-2
9140
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TRP
355
A
N
TRP
9
A
O
VAL
495
A
O
VAL
149
A
O
ARG
496
A
O
ARG
150
A
N
THR
433
A
N
THR
87
A
N
ILE
434
A
N
ILE
88
A
O
HIS
446
A
O
HIS
100
A
N
TRP
355
A
N
TRP
9
A
O
VAL
495
A
O
VAL
149
A
O
THR
492
A
O
THR
146
A
N
LYS
489
A
N
LYS
143
B
O
THR
604
B
O
THR
4
A
N
GLY
472
A
N
GLY
126
A
O
MET
477
A
O
MET
131
A
N
ILE
407
A
N
ILE
61
A
O
HIS
412
A
O
HIS
66
A
N
CYS
390
A
N
CYS
44
A
O
LEU
393
A
O
LEU
47
A
N
ILE
375
A
N
ILE
29
B
O
THR
604
B
O
THR
4
A
N
GLY
472
A
N
GLY
126
A
O
MET
477
A
O
MET
131
A
N
ILE
407
A
N
ILE
61
A
O
HIS
412
A
O
HIS
66
A
N
CYS
390
A
N
CYS
44
A
O
LEU
389
A
O
LEU
43
A
N
PHE
380
A
N
PHE
34
1
A
CG
GLN
347
A
CG
GLN
1
1
Y
1
A
CD
GLN
347
A
CD
GLN
1
1
Y
1
A
OE1
GLN
347
A
OE1
GLN
1
1
Y
1
A
NE2
GLN
347
A
NE2
GLN
1
1
Y
1
A
ARG
502
A
ARG
156
1
Y
1
A
PHE
503
A
PHE
157
1
Y
1
A
ASP
504
A
ASP
158
1
Y
1
A
LEU
505
A
LEU
159
1
Y
1
A
GLU
506
A
GLU
160
1
Y
1
A
ARG
402
85.73
-6.24
1
A
CYS
403
-163.34
34.96
1
A
GLU
439
-46.73
163.11
1
A
PRO
441
-52.93
174.83
1
A
VAL
442
-34.80
141.11
1
A
THR
475
-118.57
65.93
22.0
0.2420000
0.2130000
2.40
19.63
739
7408
10.0
RANDOM
1
isotropic
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
TRAF6 apo form
Engh & Huber
0.35
0.30
5.00
0.29
0.18
2.40
19.63
79
1409
0
0
1330
0.005
1.4
25.9
0.79
14.1
2.40
40.0
1LB5
12396
2.0
1.0
0.0550000
1
96.0
2.40
2.55
95.8
refinement
CNS
0.9
data reduction
DENZO
data scaling
SCALEPACK
TRAF6-RANK Complex
1
N
N
2
N
N
3
N
N
3
N
N
A
ASN
359
A
ASN
13
HELX_P
A
GLU
369
A
GLU
23
1
1
11
A
TYR
418
A
TYR
72
HELX_P
A
LEU
422
A
LEU
76
5
2
5
A
LEU
456
A
LEU
110
HELX_P
A
GLN
460
A
GLN
114
5
3
5
A
GLU
480
A
GLU
134
HELX_P
A
GLN
484
A
GLN
138
5
4
5
SIGNALING PROTEIN
TRAF6-RANK complex, SIGNALING PROTEIN
A
LYS
384
A
LYS
38
1
A
PRO
385
A
PRO
39
0.04
A
TRP
424
A
TRP
78
1
A
PRO
425
A
PRO
79
-0.01
TRAF6_HUMAN
UNP
1
347
Q9Y4K3
QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF
QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFD
AAB86809
GB
2
342
2612918
QMPTEDEY
347
504
1LB5
347
504
Q9Y4K3
A
1
1
158
342
349
1LB5
601
608
2612918
B
2
1
8
1
cloning artifact
LEU
505
1LB5
A
Q9Y4K3
UNP
159
1
cloning artifact
GLU
506
1LB5
A
Q9Y4K3
UNP
160
4
3
5
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
351
A
GLY
5
A
ILE
357
A
ILE
11
A
THR
492
A
THR
146
A
SER
500
A
SER
154
A
THR
429
A
THR
83
A
ILE
434
A
ILE
88
A
HIS
446
A
HIS
100
A
ASP
451
A
ASP
105
A
GLY
351
A
GLY
5
A
ILE
357
A
ILE
11
A
THR
492
A
THR
146
A
SER
500
A
SER
154
A
ILE
488
A
ILE
142
A
LYS
489
A
LYS
143
B
THR
604
B
THR
4
B
GLU
607
B
GLU
7
A
LYS
469
A
LYS
123
A
HIS
478
A
HIS
132
A
TYR
406
A
TYR
60
A
MET
414
A
MET
68
A
LYS
388
A
LYS
42
A
LEU
395
A
LEU
49
A
VAL
373
A
VAL
27
A
HIS
376
A
HIS
30
B
THR
604
B
THR
4
B
GLU
607
B
GLU
7
A
LYS
469
A
LYS
123
A
HIS
478
A
HIS
132
A
TYR
406
A
TYR
60
A
MET
414
A
MET
68
A
LYS
388
A
LYS
42
A
LEU
395
A
LEU
49
A
PHE
380
A
PHE
34
A
TYR
381
A
TYR
35
19
P 21 21 21