0.025076 0.000000 0.000000 0.000000 0.022823 0.000000 0.000000 0.000000 0.009859 0.00000 0.00000 0.00000 Ye, H. Arron, J.R. Lamothe, B. Cirilli, M. Kobayashi, T. Shevde, N.K. Segal, D. Dzivenu, O. Vologodskaia, M. Yim, M. Du, K. Singh, S. Pike, J.W. Darnay, B.G. Choi, Y. Wu, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 39.879 43.815 101.435 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing UK Nature NATUAS 0006 0028-0836 418 443 447 10.1038/nature00888 12140561 Distinct molecular mechanism for initiating TRAF6 signalling. 2002 10.2210/pdb1lb6/pdb pdb_00001lb6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1999-09-21 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.0 X4A NSLS SYNCHROTRON NSLS BEAMLINE X4A 18676.549 TNF receptor-associated factor 6 residues 347-504 1 man polymer 1134.214 CD40 antigen residues 230-238 1 man polymer 18.015 water 122 nat water no no QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDLE QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDLE A polypeptide(L) no no KQEPQEIDF KQEPQEIDF B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample TRAF6 9606 Homo sapiens 562 Escherichia coli human Homo Escherichia sample CD40 9606 Homo sapiens 562 Escherichia coli 1 2.24 44.97 VAPOR DIFFUSION, HANGING DROP 7.5 PEG8000, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 software chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Refinement description 1 0 2002-07-31 1 1 2008-04-28 1 2 2011-07-13 1 3 2017-10-11 1 4 2024-02-14 1 5 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details TRAF6 apo structure TRAF6-RANK complex RCSB Y RCSB 2002-04-02 REL HOH water TRAF6 apo form Other experimental model TIP 700 3 HOH HOH 700 A TIP 701 3 HOH HOH 701 A TIP 703 3 HOH HOH 703 A TIP 705 3 HOH HOH 705 A TIP 706 3 HOH HOH 706 A TIP 707 3 HOH HOH 707 A TIP 708 3 HOH HOH 708 A TIP 709 3 HOH HOH 709 A TIP 710 3 HOH HOH 710 A TIP 711 3 HOH HOH 711 A TIP 712 3 HOH HOH 712 A TIP 713 3 HOH HOH 713 A TIP 714 3 HOH HOH 714 A TIP 715 3 HOH HOH 715 A TIP 716 3 HOH HOH 716 A TIP 717 3 HOH HOH 717 A TIP 718 3 HOH HOH 718 A TIP 719 3 HOH HOH 719 A TIP 720 3 HOH HOH 720 A TIP 721 3 HOH HOH 721 A TIP 722 3 HOH HOH 722 A TIP 723 3 HOH HOH 723 A TIP 724 3 HOH HOH 724 A TIP 725 3 HOH HOH 725 A TIP 726 3 HOH HOH 726 A TIP 727 3 HOH HOH 727 A TIP 728 3 HOH HOH 728 A TIP 729 3 HOH HOH 729 A TIP 730 3 HOH HOH 730 A TIP 731 3 HOH HOH 731 A TIP 732 3 HOH HOH 732 A TIP 733 3 HOH HOH 733 A TIP 736 3 HOH HOH 736 A TIP 737 3 HOH HOH 737 A TIP 738 3 HOH HOH 738 A TIP 739 3 HOH HOH 739 A TIP 740 3 HOH HOH 740 A TIP 741 3 HOH HOH 741 A TIP 742 3 HOH HOH 742 A TIP 743 3 HOH HOH 743 A TIP 744 3 HOH HOH 744 A TIP 745 3 HOH HOH 745 A TIP 746 3 HOH HOH 746 A TIP 747 3 HOH HOH 747 A TIP 748 3 HOH HOH 748 A TIP 749 3 HOH HOH 749 A TIP 750 3 HOH HOH 750 A TIP 752 3 HOH HOH 752 A TIP 753 3 HOH HOH 753 A TIP 754 3 HOH HOH 754 A TIP 755 3 HOH HOH 755 A TIP 756 3 HOH HOH 756 A TIP 757 3 HOH HOH 757 A TIP 758 3 HOH HOH 758 A TIP 759 3 HOH HOH 759 A TIP 760 3 HOH HOH 760 A TIP 761 3 HOH HOH 761 A TIP 762 3 HOH HOH 762 A TIP 763 3 HOH HOH 763 A TIP 764 3 HOH HOH 764 A TIP 765 3 HOH HOH 765 A TIP 766 3 HOH HOH 766 A TIP 767 3 HOH HOH 767 A TIP 768 3 HOH HOH 768 A TIP 769 3 HOH HOH 769 A TIP 770 3 HOH HOH 770 A TIP 771 3 HOH HOH 771 A TIP 772 3 HOH HOH 772 A TIP 773 3 HOH HOH 773 A TIP 774 3 HOH HOH 774 A TIP 775 3 HOH HOH 775 A TIP 776 3 HOH HOH 776 A TIP 777 3 HOH HOH 777 A TIP 778 3 HOH HOH 778 A TIP 779 3 HOH HOH 779 A TIP 780 3 HOH HOH 780 A TIP 781 3 HOH HOH 781 A TIP 782 3 HOH HOH 782 A TIP 783 3 HOH HOH 783 A TIP 784 3 HOH HOH 784 A TIP 785 3 HOH HOH 785 A TIP 786 3 HOH HOH 786 A TIP 787 3 HOH HOH 787 A TIP 788 3 HOH HOH 788 A TIP 789 3 HOH HOH 789 A TIP 790 3 HOH HOH 790 A TIP 791 3 HOH HOH 791 A TIP 792 3 HOH HOH 792 A TIP 793 3 HOH HOH 793 A TIP 794 3 HOH HOH 794 A TIP 795 3 HOH HOH 795 A TIP 796 3 HOH HOH 796 A TIP 797 3 HOH HOH 797 A TIP 798 3 HOH HOH 798 A TIP 800 3 HOH HOH 800 A TIP 801 3 HOH HOH 801 A TIP 802 3 HOH HOH 802 A TIP 803 3 HOH HOH 803 A TIP 805 3 HOH HOH 805 A TIP 806 3 HOH HOH 806 A TIP 807 3 HOH HOH 807 A TIP 808 3 HOH HOH 808 A TIP 809 3 HOH HOH 809 A TIP 810 3 HOH HOH 810 A TIP 811 3 HOH HOH 811 A TIP 812 3 HOH HOH 812 A TIP 813 3 HOH HOH 813 A TIP 815 3 HOH HOH 815 A TIP 816 3 HOH HOH 816 A TIP 818 3 HOH HOH 818 A TIP 820 3 HOH HOH 820 A TIP 821 3 HOH HOH 821 A TIP 702 3 HOH HOH 702 B TIP 704 3 HOH HOH 704 B TIP 734 3 HOH HOH 734 B TIP 735 3 HOH HOH 735 B TIP 751 3 HOH HOH 751 B TIP 799 3 HOH HOH 799 B TIP 804 3 HOH HOH 804 B TIP 814 3 HOH HOH 814 B TIP 817 3 HOH HOH 817 B TIP 819 3 HOH HOH 819 B ALA 347 n 1 GLN 347 A GLN 348 n 2 GLN 348 A CYS 349 n 3 CYS 349 A ASN 350 n 4 ASN 350 A GLY 351 n 5 GLY 351 A ILE 352 n 6 ILE 352 A TYR 353 n 7 TYR 353 A ILE 354 n 8 ILE 354 A TRP 355 n 9 TRP 355 A LYS 356 n 10 LYS 356 A ILE 357 n 11 ILE 357 A GLY 358 n 12 GLY 358 A ASN 359 n 13 ASN 359 A PHE 360 n 14 PHE 360 A GLY 361 n 15 GLY 361 A MET 362 n 16 MET 362 A HIS 363 n 17 HIS 363 A LEU 364 n 18 LEU 364 A LYS 365 n 19 LYS 365 A CYS 366 n 20 CYS 366 A GLN 367 n 21 GLN 367 A GLU 368 n 22 GLU 368 A GLU 369 n 23 GLU 369 A GLU 370 n 24 GLU 370 A LYS 371 n 25 LYS 371 A PRO 372 n 26 PRO 372 A VAL 373 n 27 VAL 373 A VAL 374 n 28 VAL 374 A ILE 375 n 29 ILE 375 A HIS 376 n 30 HIS 376 A SER 377 n 31 SER 377 A PRO 378 n 32 PRO 378 A GLY 379 n 33 GLY 379 A PHE 380 n 34 PHE 380 A TYR 381 n 35 TYR 381 A THR 382 n 36 THR 382 A GLY 383 n 37 GLY 383 A LYS 384 n 38 LYS 384 A PRO 385 n 39 PRO 385 A GLY 386 n 40 GLY 386 A TYR 387 n 41 TYR 387 A LYS 388 n 42 LYS 388 A LEU 389 n 43 LEU 389 A CYS 390 n 44 CYS 390 A MET 391 n 45 MET 391 A ARG 392 n 46 ARG 392 A LEU 393 n 47 LEU 393 A HIS 394 n 48 HIS 394 A LEU 395 n 49 LEU 395 A GLN 396 n 50 GLN 396 A LEU 397 n 51 LEU 397 A PRO 398 n 52 PRO 398 A THR 399 n 53 THR 399 A ALA 400 n 54 ALA 400 A GLN 401 n 55 GLN 401 A ARG 402 n 56 ARG 402 A CYS 403 n 57 CYS 403 A ALA 404 n 58 ALA 404 A ASN 405 n 59 ASN 405 A TYR 406 n 60 TYR 406 A ILE 407 n 61 ILE 407 A SER 408 n 62 SER 408 A LEU 409 n 63 LEU 409 A PHE 410 n 64 PHE 410 A VAL 411 n 65 VAL 411 A HIS 412 n 66 HIS 412 A THR 413 n 67 THR 413 A MET 414 n 68 MET 414 A GLN 415 n 69 GLN 415 A GLY 416 n 70 GLY 416 A GLU 417 n 71 GLU 417 A TYR 418 n 72 TYR 418 A ASP 419 n 73 ASP 419 A SER 420 n 74 SER 420 A HIS 421 n 75 HIS 421 A LEU 422 n 76 LEU 422 A PRO 423 n 77 PRO 423 A TRP 424 n 78 TRP 424 A PRO 425 n 79 PRO 425 A PHE 426 n 80 PHE 426 A GLN 427 n 81 GLN 427 A GLY 428 n 82 GLY 428 A THR 429 n 83 THR 429 A ILE 430 n 84 ILE 430 A ARG 431 n 85 ARG 431 A LEU 432 n 86 LEU 432 A THR 433 n 87 THR 433 A ILE 434 n 88 ILE 434 A LEU 435 n 89 LEU 435 A ASP 436 n 90 ASP 436 A GLN 437 n 91 GLN 437 A SER 438 n 92 SER 438 A GLU 439 n 93 GLU 439 A ALA 440 n 94 ALA 440 A PRO 441 n 95 PRO 441 A VAL 442 n 96 VAL 442 A ARG 443 n 97 ARG 443 A GLN 444 n 98 GLN 444 A ASN 445 n 99 ASN 445 A HIS 446 n 100 HIS 446 A GLU 447 n 101 GLU 447 A GLU 448 n 102 GLU 448 A ILE 449 n 103 ILE 449 A MET 450 n 104 MET 450 A ASP 451 n 105 ASP 451 A ALA 452 n 106 ALA 452 A LYS 453 n 107 LYS 453 A PRO 454 n 108 PRO 454 A GLU 455 n 109 GLU 455 A LEU 456 n 110 LEU 456 A LEU 457 n 111 LEU 457 A ALA 458 n 112 ALA 458 A PHE 459 n 113 PHE 459 A GLN 460 n 114 GLN 460 A ARG 461 n 115 ARG 461 A PRO 462 n 116 PRO 462 A THR 463 n 117 THR 463 A ILE 464 n 118 ILE 464 A PRO 465 n 119 PRO 465 A ARG 466 n 120 ARG 466 A ASN 467 n 121 ASN 467 A PRO 468 n 122 PRO 468 A LYS 469 n 123 LYS 469 A GLY 470 n 124 GLY 470 A PHE 471 n 125 PHE 471 A GLY 472 n 126 GLY 472 A TYR 473 n 127 TYR 473 A VAL 474 n 128 VAL 474 A THR 475 n 129 THR 475 A PHE 476 n 130 PHE 476 A MET 477 n 131 MET 477 A HIS 478 n 132 HIS 478 A LEU 479 n 133 LEU 479 A GLU 480 n 134 GLU 480 A ALA 481 n 135 ALA 481 A LEU 482 n 136 LEU 482 A ARG 483 n 137 ARG 483 A GLN 484 n 138 GLN 484 A ARG 485 n 139 ARG 485 A THR 486 n 140 THR 486 A PHE 487 n 141 PHE 487 A ILE 488 n 142 ILE 488 A LYS 489 n 143 LYS 489 A ASP 490 n 144 ASP 490 A ASP 491 n 145 ASP 491 A THR 492 n 146 THR 492 A LEU 493 n 147 LEU 493 A LEU 494 n 148 LEU 494 A VAL 495 n 149 VAL 495 A ARG 496 n 150 ARG 496 A CYS 497 n 151 CYS 497 A GLU 498 n 152 GLU 498 A VAL 499 n 153 VAL 499 A SER 500 n 154 SER 500 A THR 501 n 155 THR 501 A n 156 502 A n 157 503 A n 158 504 A n 159 505 A n 160 506 A LYS 601 n 1 LYS 601 B GLN 602 n 2 GLN 602 B GLU 603 n 3 GLU 603 B PRO 604 n 4 PRO 604 B GLN 605 n 5 GLN 605 B GLU 606 n 6 GLU 606 B ILE 607 n 7 ILE 607 B ASP 608 n 8 ASP 608 B PHE 609 n 9 PHE 609 B author_and_software_defined_assembly PISA 2 dimeric 1150 -3 9040 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TRP 355 A N TRP 9 A O VAL 495 A O VAL 149 A O ARG 496 A O ARG 150 A N THR 433 A N THR 87 A N ILE 434 A N ILE 88 A O HIS 446 A O HIS 100 B O ILE 607 B O ILE 7 A N GLY 470 A N GLY 124 A O MET 477 A O MET 131 A N ILE 407 A N ILE 61 A O SER 408 A O SER 62 A N HIS 394 A N HIS 48 A O LEU 393 A O LEU 47 A N ILE 375 A N ILE 29 B O ILE 607 B O ILE 7 A N GLY 470 A N GLY 124 A O MET 477 A O MET 131 A N ILE 407 A N ILE 61 A O SER 408 A O SER 62 A N HIS 394 A N HIS 48 A O LEU 389 A O LEU 43 A N PHE 380 A N PHE 34 1 A CG GLN 347 A CG GLN 1 1 Y 1 A CD GLN 347 A CD GLN 1 1 Y 1 A OE1 GLN 347 A OE1 GLN 1 1 Y 1 A NE2 GLN 347 A NE2 GLN 1 1 Y 1 A ARG 502 A ARG 156 1 Y 1 A PHE 503 A PHE 157 1 Y 1 A ASP 504 A ASP 158 1 Y 1 A LEU 505 A LEU 159 1 Y 1 A GLU 506 A GLU 160 1 Y 1 A SER 438 -79.20 -160.83 1 A THR 475 -108.87 60.36 20.3 0.2580000 0.2030000 1.80 33.16 928 15569 6.0 random 1 isotropic THROUGHOUT 0.0 0.0 MOLECULAR REPLACEMENT TRAF6 apo form Engh & Huber 0.25 0.22 5.00 0.13 0.17 1.80 33.16 122 1462 0 0 1340 0.007 1.5 26.1 0.81 9.7 1.80 33.2 1LB6 15569 2.0 1.0 1 90.9 1.80 1.91 1887 66.9 refinement CNS 0.9 data reduction DENZO data scaling SCALEPACK TRAF6-CD40 Complex 1 N N 2 N N 3 N N 3 N N A ASN 359 A ASN 13 HELX_P A GLU 369 A GLU 23 1 1 11 A TYR 418 A TYR 72 HELX_P A LEU 422 A LEU 76 5 2 5 A LEU 456 A LEU 110 HELX_P A GLN 460 A GLN 114 5 3 5 A GLU 480 A GLU 134 HELX_P A GLN 484 A GLN 138 5 4 5 SIGNALING PROTEIN TRAF6-CD40 complex, SIGNALING PROTEIN A LYS 384 A LYS 38 1 A PRO 385 A PRO 39 -0.16 A TRP 424 A TRP 78 1 A PRO 425 A PRO 79 -0.18 TRAF6_HUMAN UNP 1 347 Q9Y4K3 QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFD TNR5_HUMAN UNP 2 230 P25942 KQEPQEINF 347 504 1LB6 347 504 Q9Y4K3 A 1 1 158 230 238 1LB6 601 609 P25942 B 2 1 9 1 cloning artifact LEU 505 1LB6 A Q9Y4K3 UNP 159 1 cloning artifact GLU 506 1LB6 A Q9Y4K3 UNP 160 2 ASN conflict ASP 608 1LB6 B P25942 UNP 237 8 4 5 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 351 A GLY 5 A ILE 357 A ILE 11 A LEU 493 A LEU 147 A SER 500 A SER 154 A THR 429 A THR 83 A ILE 434 A ILE 88 A HIS 446 A HIS 100 A ASP 451 A ASP 105 B GLN 605 B GLN 5 B ASP 608 B ASP 8 A LYS 469 A LYS 123 A HIS 478 A HIS 132 A TYR 406 A TYR 60 A MET 414 A MET 68 A LYS 388 A LYS 42 A LEU 395 A LEU 49 A VAL 373 A VAL 27 A HIS 376 A HIS 30 B GLN 605 B GLN 5 B ASP 608 B ASP 8 A LYS 469 A LYS 123 A HIS 478 A HIS 132 A TYR 406 A TYR 60 A MET 414 A MET 68 A LYS 388 A LYS 42 A LEU 395 A LEU 49 A PHE 380 A PHE 34 A TYR 381 A TYR 35 19 P 21 21 21