0.025076
0.000000
0.000000
0.000000
0.022823
0.000000
0.000000
0.000000
0.009859
0.00000
0.00000
0.00000
Ye, H.
Arron, J.R.
Lamothe, B.
Cirilli, M.
Kobayashi, T.
Shevde, N.K.
Segal, D.
Dzivenu, O.
Vologodskaia, M.
Yim, M.
Du, K.
Singh, S.
Pike, J.W.
Darnay, B.G.
Choi, Y.
Wu, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
39.879
43.815
101.435
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Nature
NATUAS
0006
0028-0836
418
443
447
10.1038/nature00888
12140561
Distinct molecular mechanism for initiating TRAF6 signalling.
2002
10.2210/pdb1lb6/pdb
pdb_00001lb6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-09-21
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.0
X4A
NSLS
SYNCHROTRON
NSLS BEAMLINE X4A
18676.549
TNF receptor-associated factor 6
residues 347-504
1
man
polymer
1134.214
CD40 antigen
residues 230-238
1
man
polymer
18.015
water
122
nat
water
no
no
QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF
QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDLE
QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF
QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDLE
A
polypeptide(L)
no
no
KQEPQEIDF
KQEPQEIDF
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
TRAF6
9606
Homo sapiens
562
Escherichia coli
human
Homo
Escherichia
sample
CD40
9606
Homo sapiens
562
Escherichia coli
1
2.24
44.97
VAPOR DIFFUSION, HANGING DROP
7.5
PEG8000, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Refinement description
1
0
2002-07-31
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
1
4
2024-02-14
1
5
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
TRAF6 apo structure
TRAF6-RANK complex
RCSB
Y
RCSB
2002-04-02
REL
HOH
water
TRAF6 apo form
Other
experimental model
TIP
700
3
HOH
HOH
700
A
TIP
701
3
HOH
HOH
701
A
TIP
703
3
HOH
HOH
703
A
TIP
705
3
HOH
HOH
705
A
TIP
706
3
HOH
HOH
706
A
TIP
707
3
HOH
HOH
707
A
TIP
708
3
HOH
HOH
708
A
TIP
709
3
HOH
HOH
709
A
TIP
710
3
HOH
HOH
710
A
TIP
711
3
HOH
HOH
711
A
TIP
712
3
HOH
HOH
712
A
TIP
713
3
HOH
HOH
713
A
TIP
714
3
HOH
HOH
714
A
TIP
715
3
HOH
HOH
715
A
TIP
716
3
HOH
HOH
716
A
TIP
717
3
HOH
HOH
717
A
TIP
718
3
HOH
HOH
718
A
TIP
719
3
HOH
HOH
719
A
TIP
720
3
HOH
HOH
720
A
TIP
721
3
HOH
HOH
721
A
TIP
722
3
HOH
HOH
722
A
TIP
723
3
HOH
HOH
723
A
TIP
724
3
HOH
HOH
724
A
TIP
725
3
HOH
HOH
725
A
TIP
726
3
HOH
HOH
726
A
TIP
727
3
HOH
HOH
727
A
TIP
728
3
HOH
HOH
728
A
TIP
729
3
HOH
HOH
729
A
TIP
730
3
HOH
HOH
730
A
TIP
731
3
HOH
HOH
731
A
TIP
732
3
HOH
HOH
732
A
TIP
733
3
HOH
HOH
733
A
TIP
736
3
HOH
HOH
736
A
TIP
737
3
HOH
HOH
737
A
TIP
738
3
HOH
HOH
738
A
TIP
739
3
HOH
HOH
739
A
TIP
740
3
HOH
HOH
740
A
TIP
741
3
HOH
HOH
741
A
TIP
742
3
HOH
HOH
742
A
TIP
743
3
HOH
HOH
743
A
TIP
744
3
HOH
HOH
744
A
TIP
745
3
HOH
HOH
745
A
TIP
746
3
HOH
HOH
746
A
TIP
747
3
HOH
HOH
747
A
TIP
748
3
HOH
HOH
748
A
TIP
749
3
HOH
HOH
749
A
TIP
750
3
HOH
HOH
750
A
TIP
752
3
HOH
HOH
752
A
TIP
753
3
HOH
HOH
753
A
TIP
754
3
HOH
HOH
754
A
TIP
755
3
HOH
HOH
755
A
TIP
756
3
HOH
HOH
756
A
TIP
757
3
HOH
HOH
757
A
TIP
758
3
HOH
HOH
758
A
TIP
759
3
HOH
HOH
759
A
TIP
760
3
HOH
HOH
760
A
TIP
761
3
HOH
HOH
761
A
TIP
762
3
HOH
HOH
762
A
TIP
763
3
HOH
HOH
763
A
TIP
764
3
HOH
HOH
764
A
TIP
765
3
HOH
HOH
765
A
TIP
766
3
HOH
HOH
766
A
TIP
767
3
HOH
HOH
767
A
TIP
768
3
HOH
HOH
768
A
TIP
769
3
HOH
HOH
769
A
TIP
770
3
HOH
HOH
770
A
TIP
771
3
HOH
HOH
771
A
TIP
772
3
HOH
HOH
772
A
TIP
773
3
HOH
HOH
773
A
TIP
774
3
HOH
HOH
774
A
TIP
775
3
HOH
HOH
775
A
TIP
776
3
HOH
HOH
776
A
TIP
777
3
HOH
HOH
777
A
TIP
778
3
HOH
HOH
778
A
TIP
779
3
HOH
HOH
779
A
TIP
780
3
HOH
HOH
780
A
TIP
781
3
HOH
HOH
781
A
TIP
782
3
HOH
HOH
782
A
TIP
783
3
HOH
HOH
783
A
TIP
784
3
HOH
HOH
784
A
TIP
785
3
HOH
HOH
785
A
TIP
786
3
HOH
HOH
786
A
TIP
787
3
HOH
HOH
787
A
TIP
788
3
HOH
HOH
788
A
TIP
789
3
HOH
HOH
789
A
TIP
790
3
HOH
HOH
790
A
TIP
791
3
HOH
HOH
791
A
TIP
792
3
HOH
HOH
792
A
TIP
793
3
HOH
HOH
793
A
TIP
794
3
HOH
HOH
794
A
TIP
795
3
HOH
HOH
795
A
TIP
796
3
HOH
HOH
796
A
TIP
797
3
HOH
HOH
797
A
TIP
798
3
HOH
HOH
798
A
TIP
800
3
HOH
HOH
800
A
TIP
801
3
HOH
HOH
801
A
TIP
802
3
HOH
HOH
802
A
TIP
803
3
HOH
HOH
803
A
TIP
805
3
HOH
HOH
805
A
TIP
806
3
HOH
HOH
806
A
TIP
807
3
HOH
HOH
807
A
TIP
808
3
HOH
HOH
808
A
TIP
809
3
HOH
HOH
809
A
TIP
810
3
HOH
HOH
810
A
TIP
811
3
HOH
HOH
811
A
TIP
812
3
HOH
HOH
812
A
TIP
813
3
HOH
HOH
813
A
TIP
815
3
HOH
HOH
815
A
TIP
816
3
HOH
HOH
816
A
TIP
818
3
HOH
HOH
818
A
TIP
820
3
HOH
HOH
820
A
TIP
821
3
HOH
HOH
821
A
TIP
702
3
HOH
HOH
702
B
TIP
704
3
HOH
HOH
704
B
TIP
734
3
HOH
HOH
734
B
TIP
735
3
HOH
HOH
735
B
TIP
751
3
HOH
HOH
751
B
TIP
799
3
HOH
HOH
799
B
TIP
804
3
HOH
HOH
804
B
TIP
814
3
HOH
HOH
814
B
TIP
817
3
HOH
HOH
817
B
TIP
819
3
HOH
HOH
819
B
ALA
347
n
1
GLN
347
A
GLN
348
n
2
GLN
348
A
CYS
349
n
3
CYS
349
A
ASN
350
n
4
ASN
350
A
GLY
351
n
5
GLY
351
A
ILE
352
n
6
ILE
352
A
TYR
353
n
7
TYR
353
A
ILE
354
n
8
ILE
354
A
TRP
355
n
9
TRP
355
A
LYS
356
n
10
LYS
356
A
ILE
357
n
11
ILE
357
A
GLY
358
n
12
GLY
358
A
ASN
359
n
13
ASN
359
A
PHE
360
n
14
PHE
360
A
GLY
361
n
15
GLY
361
A
MET
362
n
16
MET
362
A
HIS
363
n
17
HIS
363
A
LEU
364
n
18
LEU
364
A
LYS
365
n
19
LYS
365
A
CYS
366
n
20
CYS
366
A
GLN
367
n
21
GLN
367
A
GLU
368
n
22
GLU
368
A
GLU
369
n
23
GLU
369
A
GLU
370
n
24
GLU
370
A
LYS
371
n
25
LYS
371
A
PRO
372
n
26
PRO
372
A
VAL
373
n
27
VAL
373
A
VAL
374
n
28
VAL
374
A
ILE
375
n
29
ILE
375
A
HIS
376
n
30
HIS
376
A
SER
377
n
31
SER
377
A
PRO
378
n
32
PRO
378
A
GLY
379
n
33
GLY
379
A
PHE
380
n
34
PHE
380
A
TYR
381
n
35
TYR
381
A
THR
382
n
36
THR
382
A
GLY
383
n
37
GLY
383
A
LYS
384
n
38
LYS
384
A
PRO
385
n
39
PRO
385
A
GLY
386
n
40
GLY
386
A
TYR
387
n
41
TYR
387
A
LYS
388
n
42
LYS
388
A
LEU
389
n
43
LEU
389
A
CYS
390
n
44
CYS
390
A
MET
391
n
45
MET
391
A
ARG
392
n
46
ARG
392
A
LEU
393
n
47
LEU
393
A
HIS
394
n
48
HIS
394
A
LEU
395
n
49
LEU
395
A
GLN
396
n
50
GLN
396
A
LEU
397
n
51
LEU
397
A
PRO
398
n
52
PRO
398
A
THR
399
n
53
THR
399
A
ALA
400
n
54
ALA
400
A
GLN
401
n
55
GLN
401
A
ARG
402
n
56
ARG
402
A
CYS
403
n
57
CYS
403
A
ALA
404
n
58
ALA
404
A
ASN
405
n
59
ASN
405
A
TYR
406
n
60
TYR
406
A
ILE
407
n
61
ILE
407
A
SER
408
n
62
SER
408
A
LEU
409
n
63
LEU
409
A
PHE
410
n
64
PHE
410
A
VAL
411
n
65
VAL
411
A
HIS
412
n
66
HIS
412
A
THR
413
n
67
THR
413
A
MET
414
n
68
MET
414
A
GLN
415
n
69
GLN
415
A
GLY
416
n
70
GLY
416
A
GLU
417
n
71
GLU
417
A
TYR
418
n
72
TYR
418
A
ASP
419
n
73
ASP
419
A
SER
420
n
74
SER
420
A
HIS
421
n
75
HIS
421
A
LEU
422
n
76
LEU
422
A
PRO
423
n
77
PRO
423
A
TRP
424
n
78
TRP
424
A
PRO
425
n
79
PRO
425
A
PHE
426
n
80
PHE
426
A
GLN
427
n
81
GLN
427
A
GLY
428
n
82
GLY
428
A
THR
429
n
83
THR
429
A
ILE
430
n
84
ILE
430
A
ARG
431
n
85
ARG
431
A
LEU
432
n
86
LEU
432
A
THR
433
n
87
THR
433
A
ILE
434
n
88
ILE
434
A
LEU
435
n
89
LEU
435
A
ASP
436
n
90
ASP
436
A
GLN
437
n
91
GLN
437
A
SER
438
n
92
SER
438
A
GLU
439
n
93
GLU
439
A
ALA
440
n
94
ALA
440
A
PRO
441
n
95
PRO
441
A
VAL
442
n
96
VAL
442
A
ARG
443
n
97
ARG
443
A
GLN
444
n
98
GLN
444
A
ASN
445
n
99
ASN
445
A
HIS
446
n
100
HIS
446
A
GLU
447
n
101
GLU
447
A
GLU
448
n
102
GLU
448
A
ILE
449
n
103
ILE
449
A
MET
450
n
104
MET
450
A
ASP
451
n
105
ASP
451
A
ALA
452
n
106
ALA
452
A
LYS
453
n
107
LYS
453
A
PRO
454
n
108
PRO
454
A
GLU
455
n
109
GLU
455
A
LEU
456
n
110
LEU
456
A
LEU
457
n
111
LEU
457
A
ALA
458
n
112
ALA
458
A
PHE
459
n
113
PHE
459
A
GLN
460
n
114
GLN
460
A
ARG
461
n
115
ARG
461
A
PRO
462
n
116
PRO
462
A
THR
463
n
117
THR
463
A
ILE
464
n
118
ILE
464
A
PRO
465
n
119
PRO
465
A
ARG
466
n
120
ARG
466
A
ASN
467
n
121
ASN
467
A
PRO
468
n
122
PRO
468
A
LYS
469
n
123
LYS
469
A
GLY
470
n
124
GLY
470
A
PHE
471
n
125
PHE
471
A
GLY
472
n
126
GLY
472
A
TYR
473
n
127
TYR
473
A
VAL
474
n
128
VAL
474
A
THR
475
n
129
THR
475
A
PHE
476
n
130
PHE
476
A
MET
477
n
131
MET
477
A
HIS
478
n
132
HIS
478
A
LEU
479
n
133
LEU
479
A
GLU
480
n
134
GLU
480
A
ALA
481
n
135
ALA
481
A
LEU
482
n
136
LEU
482
A
ARG
483
n
137
ARG
483
A
GLN
484
n
138
GLN
484
A
ARG
485
n
139
ARG
485
A
THR
486
n
140
THR
486
A
PHE
487
n
141
PHE
487
A
ILE
488
n
142
ILE
488
A
LYS
489
n
143
LYS
489
A
ASP
490
n
144
ASP
490
A
ASP
491
n
145
ASP
491
A
THR
492
n
146
THR
492
A
LEU
493
n
147
LEU
493
A
LEU
494
n
148
LEU
494
A
VAL
495
n
149
VAL
495
A
ARG
496
n
150
ARG
496
A
CYS
497
n
151
CYS
497
A
GLU
498
n
152
GLU
498
A
VAL
499
n
153
VAL
499
A
SER
500
n
154
SER
500
A
THR
501
n
155
THR
501
A
n
156
502
A
n
157
503
A
n
158
504
A
n
159
505
A
n
160
506
A
LYS
601
n
1
LYS
601
B
GLN
602
n
2
GLN
602
B
GLU
603
n
3
GLU
603
B
PRO
604
n
4
PRO
604
B
GLN
605
n
5
GLN
605
B
GLU
606
n
6
GLU
606
B
ILE
607
n
7
ILE
607
B
ASP
608
n
8
ASP
608
B
PHE
609
n
9
PHE
609
B
author_and_software_defined_assembly
PISA
2
dimeric
1150
-3
9040
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TRP
355
A
N
TRP
9
A
O
VAL
495
A
O
VAL
149
A
O
ARG
496
A
O
ARG
150
A
N
THR
433
A
N
THR
87
A
N
ILE
434
A
N
ILE
88
A
O
HIS
446
A
O
HIS
100
B
O
ILE
607
B
O
ILE
7
A
N
GLY
470
A
N
GLY
124
A
O
MET
477
A
O
MET
131
A
N
ILE
407
A
N
ILE
61
A
O
SER
408
A
O
SER
62
A
N
HIS
394
A
N
HIS
48
A
O
LEU
393
A
O
LEU
47
A
N
ILE
375
A
N
ILE
29
B
O
ILE
607
B
O
ILE
7
A
N
GLY
470
A
N
GLY
124
A
O
MET
477
A
O
MET
131
A
N
ILE
407
A
N
ILE
61
A
O
SER
408
A
O
SER
62
A
N
HIS
394
A
N
HIS
48
A
O
LEU
389
A
O
LEU
43
A
N
PHE
380
A
N
PHE
34
1
A
CG
GLN
347
A
CG
GLN
1
1
Y
1
A
CD
GLN
347
A
CD
GLN
1
1
Y
1
A
OE1
GLN
347
A
OE1
GLN
1
1
Y
1
A
NE2
GLN
347
A
NE2
GLN
1
1
Y
1
A
ARG
502
A
ARG
156
1
Y
1
A
PHE
503
A
PHE
157
1
Y
1
A
ASP
504
A
ASP
158
1
Y
1
A
LEU
505
A
LEU
159
1
Y
1
A
GLU
506
A
GLU
160
1
Y
1
A
SER
438
-79.20
-160.83
1
A
THR
475
-108.87
60.36
20.3
0.2580000
0.2030000
1.80
33.16
928
15569
6.0
random
1
isotropic
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
TRAF6 apo form
Engh & Huber
0.25
0.22
5.00
0.13
0.17
1.80
33.16
122
1462
0
0
1340
0.007
1.5
26.1
0.81
9.7
1.80
33.2
1LB6
15569
2.0
1.0
1
90.9
1.80
1.91
1887
66.9
refinement
CNS
0.9
data reduction
DENZO
data scaling
SCALEPACK
TRAF6-CD40 Complex
1
N
N
2
N
N
3
N
N
3
N
N
A
ASN
359
A
ASN
13
HELX_P
A
GLU
369
A
GLU
23
1
1
11
A
TYR
418
A
TYR
72
HELX_P
A
LEU
422
A
LEU
76
5
2
5
A
LEU
456
A
LEU
110
HELX_P
A
GLN
460
A
GLN
114
5
3
5
A
GLU
480
A
GLU
134
HELX_P
A
GLN
484
A
GLN
138
5
4
5
SIGNALING PROTEIN
TRAF6-CD40 complex, SIGNALING PROTEIN
A
LYS
384
A
LYS
38
1
A
PRO
385
A
PRO
39
-0.16
A
TRP
424
A
TRP
78
1
A
PRO
425
A
PRO
79
-0.18
TRAF6_HUMAN
UNP
1
347
Q9Y4K3
QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF
QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFD
TNR5_HUMAN
UNP
2
230
P25942
KQEPQEINF
347
504
1LB6
347
504
Q9Y4K3
A
1
1
158
230
238
1LB6
601
609
P25942
B
2
1
9
1
cloning artifact
LEU
505
1LB6
A
Q9Y4K3
UNP
159
1
cloning artifact
GLU
506
1LB6
A
Q9Y4K3
UNP
160
2
ASN
conflict
ASP
608
1LB6
B
P25942
UNP
237
8
4
5
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
351
A
GLY
5
A
ILE
357
A
ILE
11
A
LEU
493
A
LEU
147
A
SER
500
A
SER
154
A
THR
429
A
THR
83
A
ILE
434
A
ILE
88
A
HIS
446
A
HIS
100
A
ASP
451
A
ASP
105
B
GLN
605
B
GLN
5
B
ASP
608
B
ASP
8
A
LYS
469
A
LYS
123
A
HIS
478
A
HIS
132
A
TYR
406
A
TYR
60
A
MET
414
A
MET
68
A
LYS
388
A
LYS
42
A
LEU
395
A
LEU
49
A
VAL
373
A
VAL
27
A
HIS
376
A
HIS
30
B
GLN
605
B
GLN
5
B
ASP
608
B
ASP
8
A
LYS
469
A
LYS
123
A
HIS
478
A
HIS
132
A
TYR
406
A
TYR
60
A
MET
414
A
MET
68
A
LYS
388
A
LYS
42
A
LEU
395
A
LEU
49
A
PHE
380
A
PHE
34
A
TYR
381
A
TYR
35
19
P 21 21 21