1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Sivakolundu, S.G.
Mabrouk, P.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
GW
J.BIOL.INORG.CHEM.
JJBCFA
2154
0949-8257
8
527
539
12764601
Structure function relationship of reduced cytochrome c probed by complete solution structure determination in 30%
acetonitrile/water solution
2003
10.2210/pdb1lc1/pdb
pdb_00001lc1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
11725.598
CYTOCHROME C
1
nat
polymer
618.503
HEME C
1
syn
non-polymer
FERROCYTOCHROME C
no
no
GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM
IFAGIKKKTEREDLIAYLKKATNE
GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM
IFAGIKKKTEREDLIAYLKKATNE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
horse
Equus
sample
9796
heart
Equus caballus
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-06-03
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Solution Structure Of Reduced Horse Heart Cytochrome c in 30% Acetonitrile Solution, NMR 30 Structures
RCSB
Y
RCSB
2002-04-04
REL
REL
HEC
HEME C
This structure was determined using standard 2D homonuclear techniques.
1
DQF-COSY
NOESY
50mM
7.2
1
atm
298
K
The structure is based on a total of 2232 NOE-based distance restraints and 73 dihedral angle restraints
SIMULATED ANNEALING, TORSION ANGLE DYNAMICS, RESTRAINED ENERGY MINIMIZATION
minimized average structure
5mM FERROCYTOCHROME C 1H; 50mM PHOSPHATE BUFFER; 70% H2O, 30% CD3CN
70% H2O, 30% CD3CN
David Ruben
collection
RNMR
1.0
MSI
processing
Felix
2000
Guntert, P., Mumenthaler, C. & Wuthrich, K.
structure solution
DYANA
1.5
CASE, PEARLMAN, CALDWELL, CHEATHAM III, ROSS, SIMMERLING, DARDEN, MERZ, STANTON, CHENG, VINCENT, CROWLEY, FERGUSON, RADMER, SEIBEL, SINGH, WEINER, KOLLMAN
refinement
Amber
5.0
591.1
Home-built
HOME BUILT
HEC
105
2
HEC
HEC
105
A
GLY
1
n
1
GLY
1
A
ASP
2
n
2
ASP
2
A
VAL
3
n
3
VAL
3
A
GLU
4
n
4
GLU
4
A
LYS
5
n
5
LYS
5
A
GLY
6
n
6
GLY
6
A
LYS
7
n
7
LYS
7
A
LYS
8
n
8
LYS
8
A
ILE
9
n
9
ILE
9
A
PHE
10
n
10
PHE
10
A
VAL
11
n
11
VAL
11
A
GLN
12
n
12
GLN
12
A
LYS
13
n
13
LYS
13
A
CYS
14
n
14
CYS
14
A
ALA
15
n
15
ALA
15
A
GLN
16
n
16
GLN
16
A
CYS
17
n
17
CYS
17
A
HIS
18
n
18
HIS
18
A
THR
19
n
19
THR
19
A
VAL
20
n
20
VAL
20
A
GLU
21
n
21
GLU
21
A
LYS
22
n
22
LYS
22
A
GLY
23
n
23
GLY
23
A
GLY
24
n
24
GLY
24
A
LYS
25
n
25
LYS
25
A
HIS
26
n
26
HIS
26
A
LYS
27
n
27
LYS
27
A
THR
28
n
28
THR
28
A
GLY
29
n
29
GLY
29
A
PRO
30
n
30
PRO
30
A
ASN
31
n
31
ASN
31
A
LEU
32
n
32
LEU
32
A
HIS
33
n
33
HIS
33
A
GLY
34
n
34
GLY
34
A
LEU
35
n
35
LEU
35
A
PHE
36
n
36
PHE
36
A
GLY
37
n
37
GLY
37
A
ARG
38
n
38
ARG
38
A
LYS
39
n
39
LYS
39
A
THR
40
n
40
THR
40
A
GLY
41
n
41
GLY
41
A
GLN
42
n
42
GLN
42
A
ALA
43
n
43
ALA
43
A
PRO
44
n
44
PRO
44
A
GLY
45
n
45
GLY
45
A
PHE
46
n
46
PHE
46
A
THR
47
n
47
THR
47
A
TYR
48
n
48
TYR
48
A
THR
49
n
49
THR
49
A
ASP
50
n
50
ASP
50
A
ALA
51
n
51
ALA
51
A
ASN
52
n
52
ASN
52
A
LYS
53
n
53
LYS
53
A
ASN
54
n
54
ASN
54
A
LYS
55
n
55
LYS
55
A
GLY
56
n
56
GLY
56
A
ILE
57
n
57
ILE
57
A
THR
58
n
58
THR
58
A
TRP
59
n
59
TRP
59
A
LYS
60
n
60
LYS
60
A
GLU
61
n
61
GLU
61
A
GLU
62
n
62
GLU
62
A
THR
63
n
63
THR
63
A
LEU
64
n
64
LEU
64
A
MET
65
n
65
MET
65
A
GLU
66
n
66
GLU
66
A
TYR
67
n
67
TYR
67
A
LEU
68
n
68
LEU
68
A
GLU
69
n
69
GLU
69
A
ASN
70
n
70
ASN
70
A
PRO
71
n
71
PRO
71
A
LYS
72
n
72
LYS
72
A
LYS
73
n
73
LYS
73
A
TYR
74
n
74
TYR
74
A
ILE
75
n
75
ILE
75
A
PRO
76
n
76
PRO
76
A
GLY
77
n
77
GLY
77
A
THR
78
n
78
THR
78
A
LYS
79
n
79
LYS
79
A
MET
80
n
80
MET
80
A
ILE
81
n
81
ILE
81
A
PHE
82
n
82
PHE
82
A
ALA
83
n
83
ALA
83
A
GLY
84
n
84
GLY
84
A
ILE
85
n
85
ILE
85
A
LYS
86
n
86
LYS
86
A
LYS
87
n
87
LYS
87
A
LYS
88
n
88
LYS
88
A
THR
89
n
89
THR
89
A
GLU
90
n
90
GLU
90
A
ARG
91
n
91
ARG
91
A
GLU
92
n
92
GLU
92
A
ASP
93
n
93
ASP
93
A
LEU
94
n
94
LEU
94
A
ILE
95
n
95
ILE
95
A
ALA
96
n
96
ALA
96
A
TYR
97
n
97
TYR
97
A
LEU
98
n
98
LEU
98
A
LYS
99
n
99
LYS
99
A
LYS
100
n
100
LYS
100
A
ALA
101
n
101
ALA
101
A
THR
102
n
102
THR
102
A
ASN
103
n
103
ASN
103
A
GLU
104
n
104
GLU
104
A
author_defined_assembly
1
monomeric
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NA
HEC
1_555
86.4
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NB
HEC
1_555
81.1
A
HEC
105
B
NA
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NB
HEC
1_555
90.7
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NC
HEC
1_555
83.9
A
HEC
105
B
NA
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NC
HEC
1_555
170.2
A
HEC
105
B
NB
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NC
HEC
1_555
89.4
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
ND
HEC
1_555
90.6
A
HEC
105
B
NA
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
ND
HEC
1_555
88.4
A
HEC
105
B
NB
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
ND
HEC
1_555
171.6
A
HEC
105
B
NC
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
ND
HEC
1_555
90.1
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
A
MET
80
A
SD
MET
80
1_555
173.2
A
HEC
105
B
NA
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
MET
80
A
SD
MET
80
1_555
92.9
A
HEC
105
B
NB
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
MET
80
A
SD
MET
80
1_555
92.1
A
HEC
105
B
NC
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
MET
80
A
SD
MET
80
1_555
96.9
A
HEC
105
B
ND
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
MET
80
A
SD
MET
80
1_555
96.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
HG1
OE2
THR
GLU
89
92
1.41
1
A
A
HG1
OD1
THR
ASN
40
52
1.52
1
A
A
HG1
O
THR
GLY
49
77
1.56
1
A
A
HG1
O2D
THR
HEC
78
105
1.58
1
A
A
O
HG1
THR
THR
58
63
1.59
1
A
CYS
17
-141.58
-41.31
1
A
HIS
18
-104.11
70.22
1
A
THR
28
-154.02
3.91
1
A
HIS
33
-54.64
89.40
1
A
PHE
46
-63.66
98.04
1
A
ILE
57
-54.37
-4.23
1
A
THR
58
56.69
117.73
1
A
ASN
70
-163.22
56.18
1
A
MET
80
-64.07
94.57
1
A
PHE
82
-163.38
-37.97
1
A
ALA
83
46.91
-17.68
1
A
LYS
86
160.93
-84.09
1
A
ALA
101
-58.45
-8.68
1
A
ASN
103
-153.87
-10.12
minimized average
Solution Structure Of Reduced Horse Heart Cytochrome c in 30% Acetonitrile Solution, NMR Minimized Average Structure
1
N
N
2
N
N
A
ASP
2
A
ASP
2
HELX_P
A
CYS
14
A
CYS
14
1
1
13
A
ASP
50
A
ASP
50
HELX_P
A
GLY
56
A
GLY
56
1
2
7
A
LYS
60
A
LYS
60
HELX_P
A
ASN
70
A
ASN
70
1
3
11
A
ASN
70
A
ASN
70
HELX_P
A
ILE
75
A
ILE
75
1
4
6
A
LYS
87
A
LYS
87
HELX_P
A
ALA
101
A
ALA
101
1
5
15
covale
1.802
none
A
CYS
14
A
SG
CYS
14
1_555
A
HEC
105
B
CAB
HEC
1_555
covale
1.820
none
A
CYS
17
A
SG
CYS
17
1_555
A
HEC
105
B
CAC
HEC
1_555
metalc
1.971
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
metalc
2.678
A
MET
80
A
SD
MET
80
1_555
A
HEC
105
B
FE
HEC
1_555
ELECTRON TRANSPORT
CYTOCHROME C, ORGANIC SOLVENT, ELECTRON TRANSPORT
CYC_HORSE
UNP
1
1
P00004
GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM
IFAGIKKKTEREDLIAYLKKATNE
1
104
1LC1
1
104
P00004
A
1
1
104
BINDING SITE FOR RESIDUE HEC A 105
A
HEC
105
Software
17
A
LYS
13
A
LYS
13
17
1_555
A
CYS
14
A
CYS
14
17
1_555
A
CYS
17
A
CYS
17
17
1_555
A
HIS
18
A
HIS
18
17
1_555
A
THR
28
A
THR
28
17
1_555
A
PRO
30
A
PRO
30
17
1_555
A
LEU
35
A
LEU
35
17
1_555
A
THR
40
A
THR
40
17
1_555
A
ASN
52
A
ASN
52
17
1_555
A
TRP
59
A
TRP
59
17
1_555
A
TYR
67
A
TYR
67
17
1_555
A
LEU
68
A
LEU
68
17
1_555
A
THR
78
A
THR
78
17
1_555
A
LYS
79
A
LYS
79
17
1_555
A
MET
80
A
MET
80
17
1_555
A
PHE
82
A
PHE
82
17
1_555
A
LEU
94
A
LEU
94
17
1_555