1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Sivakolundu, S.G. Mabrouk, P.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking GW J.BIOL.INORG.CHEM. JJBCFA 2154 0949-8257 8 527 539 12764601 Structure function relationship of reduced cytochrome c probed by complete solution structure determination in 30% acetonitrile/water solution 2003 10.2210/pdb1lc1/pdb pdb_00001lc1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 11725.598 CYTOCHROME C 1 nat polymer 618.503 HEME C 1 syn non-polymer FERROCYTOCHROME C no no GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM IFAGIKKKTEREDLIAYLKKATNE GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM IFAGIKKKTEREDLIAYLKKATNE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n horse Equus sample 9796 heart Equus caballus database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-06-03 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Solution Structure Of Reduced Horse Heart Cytochrome c in 30% Acetonitrile Solution, NMR 30 Structures RCSB Y RCSB 2002-04-04 REL REL HEC HEME C This structure was determined using standard 2D homonuclear techniques. 1 DQF-COSY NOESY 50mM 7.2 1 atm 298 K The structure is based on a total of 2232 NOE-based distance restraints and 73 dihedral angle restraints SIMULATED ANNEALING, TORSION ANGLE DYNAMICS, RESTRAINED ENERGY MINIMIZATION minimized average structure 5mM FERROCYTOCHROME C 1H; 50mM PHOSPHATE BUFFER; 70% H2O, 30% CD3CN 70% H2O, 30% CD3CN David Ruben collection RNMR 1.0 MSI processing Felix 2000 Guntert, P., Mumenthaler, C. & Wuthrich, K. structure solution DYANA 1.5 CASE, PEARLMAN, CALDWELL, CHEATHAM III, ROSS, SIMMERLING, DARDEN, MERZ, STANTON, CHENG, VINCENT, CROWLEY, FERGUSON, RADMER, SEIBEL, SINGH, WEINER, KOLLMAN refinement Amber 5.0 591.1 Home-built HOME BUILT HEC 105 2 HEC HEC 105 A GLY 1 n 1 GLY 1 A ASP 2 n 2 ASP 2 A VAL 3 n 3 VAL 3 A GLU 4 n 4 GLU 4 A LYS 5 n 5 LYS 5 A GLY 6 n 6 GLY 6 A LYS 7 n 7 LYS 7 A LYS 8 n 8 LYS 8 A ILE 9 n 9 ILE 9 A PHE 10 n 10 PHE 10 A VAL 11 n 11 VAL 11 A GLN 12 n 12 GLN 12 A LYS 13 n 13 LYS 13 A CYS 14 n 14 CYS 14 A ALA 15 n 15 ALA 15 A GLN 16 n 16 GLN 16 A CYS 17 n 17 CYS 17 A HIS 18 n 18 HIS 18 A THR 19 n 19 THR 19 A VAL 20 n 20 VAL 20 A GLU 21 n 21 GLU 21 A LYS 22 n 22 LYS 22 A GLY 23 n 23 GLY 23 A GLY 24 n 24 GLY 24 A LYS 25 n 25 LYS 25 A HIS 26 n 26 HIS 26 A LYS 27 n 27 LYS 27 A THR 28 n 28 THR 28 A GLY 29 n 29 GLY 29 A PRO 30 n 30 PRO 30 A ASN 31 n 31 ASN 31 A LEU 32 n 32 LEU 32 A HIS 33 n 33 HIS 33 A GLY 34 n 34 GLY 34 A LEU 35 n 35 LEU 35 A PHE 36 n 36 PHE 36 A GLY 37 n 37 GLY 37 A ARG 38 n 38 ARG 38 A LYS 39 n 39 LYS 39 A THR 40 n 40 THR 40 A GLY 41 n 41 GLY 41 A GLN 42 n 42 GLN 42 A ALA 43 n 43 ALA 43 A PRO 44 n 44 PRO 44 A GLY 45 n 45 GLY 45 A PHE 46 n 46 PHE 46 A THR 47 n 47 THR 47 A TYR 48 n 48 TYR 48 A THR 49 n 49 THR 49 A ASP 50 n 50 ASP 50 A ALA 51 n 51 ALA 51 A ASN 52 n 52 ASN 52 A LYS 53 n 53 LYS 53 A ASN 54 n 54 ASN 54 A LYS 55 n 55 LYS 55 A GLY 56 n 56 GLY 56 A ILE 57 n 57 ILE 57 A THR 58 n 58 THR 58 A TRP 59 n 59 TRP 59 A LYS 60 n 60 LYS 60 A GLU 61 n 61 GLU 61 A GLU 62 n 62 GLU 62 A THR 63 n 63 THR 63 A LEU 64 n 64 LEU 64 A MET 65 n 65 MET 65 A GLU 66 n 66 GLU 66 A TYR 67 n 67 TYR 67 A LEU 68 n 68 LEU 68 A GLU 69 n 69 GLU 69 A ASN 70 n 70 ASN 70 A PRO 71 n 71 PRO 71 A LYS 72 n 72 LYS 72 A LYS 73 n 73 LYS 73 A TYR 74 n 74 TYR 74 A ILE 75 n 75 ILE 75 A PRO 76 n 76 PRO 76 A GLY 77 n 77 GLY 77 A THR 78 n 78 THR 78 A LYS 79 n 79 LYS 79 A MET 80 n 80 MET 80 A ILE 81 n 81 ILE 81 A PHE 82 n 82 PHE 82 A ALA 83 n 83 ALA 83 A GLY 84 n 84 GLY 84 A ILE 85 n 85 ILE 85 A LYS 86 n 86 LYS 86 A LYS 87 n 87 LYS 87 A LYS 88 n 88 LYS 88 A THR 89 n 89 THR 89 A GLU 90 n 90 GLU 90 A ARG 91 n 91 ARG 91 A GLU 92 n 92 GLU 92 A ASP 93 n 93 ASP 93 A LEU 94 n 94 LEU 94 A ILE 95 n 95 ILE 95 A ALA 96 n 96 ALA 96 A TYR 97 n 97 TYR 97 A LEU 98 n 98 LEU 98 A LYS 99 n 99 LYS 99 A LYS 100 n 100 LYS 100 A ALA 101 n 101 ALA 101 A THR 102 n 102 THR 102 A ASN 103 n 103 ASN 103 A GLU 104 n 104 GLU 104 A author_defined_assembly 1 monomeric A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NA HEC 1_555 86.4 A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NB HEC 1_555 81.1 A HEC 105 B NA HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NB HEC 1_555 90.7 A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NC HEC 1_555 83.9 A HEC 105 B NA HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NC HEC 1_555 170.2 A HEC 105 B NB HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NC HEC 1_555 89.4 A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B ND HEC 1_555 90.6 A HEC 105 B NA HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B ND HEC 1_555 88.4 A HEC 105 B NB HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B ND HEC 1_555 171.6 A HEC 105 B NC HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B ND HEC 1_555 90.1 A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 A MET 80 A SD MET 80 1_555 173.2 A HEC 105 B NA HEC 1_555 A HEC 105 B FE HEC 1_555 A MET 80 A SD MET 80 1_555 92.9 A HEC 105 B NB HEC 1_555 A HEC 105 B FE HEC 1_555 A MET 80 A SD MET 80 1_555 92.1 A HEC 105 B NC HEC 1_555 A HEC 105 B FE HEC 1_555 A MET 80 A SD MET 80 1_555 96.9 A HEC 105 B ND HEC 1_555 A HEC 105 B FE HEC 1_555 A MET 80 A SD MET 80 1_555 96.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A HG1 OE2 THR GLU 89 92 1.41 1 A A HG1 OD1 THR ASN 40 52 1.52 1 A A HG1 O THR GLY 49 77 1.56 1 A A HG1 O2D THR HEC 78 105 1.58 1 A A O HG1 THR THR 58 63 1.59 1 A CYS 17 -141.58 -41.31 1 A HIS 18 -104.11 70.22 1 A THR 28 -154.02 3.91 1 A HIS 33 -54.64 89.40 1 A PHE 46 -63.66 98.04 1 A ILE 57 -54.37 -4.23 1 A THR 58 56.69 117.73 1 A ASN 70 -163.22 56.18 1 A MET 80 -64.07 94.57 1 A PHE 82 -163.38 -37.97 1 A ALA 83 46.91 -17.68 1 A LYS 86 160.93 -84.09 1 A ALA 101 -58.45 -8.68 1 A ASN 103 -153.87 -10.12 minimized average Solution Structure Of Reduced Horse Heart Cytochrome c in 30% Acetonitrile Solution, NMR Minimized Average Structure 1 N N 2 N N A ASP 2 A ASP 2 HELX_P A CYS 14 A CYS 14 1 1 13 A ASP 50 A ASP 50 HELX_P A GLY 56 A GLY 56 1 2 7 A LYS 60 A LYS 60 HELX_P A ASN 70 A ASN 70 1 3 11 A ASN 70 A ASN 70 HELX_P A ILE 75 A ILE 75 1 4 6 A LYS 87 A LYS 87 HELX_P A ALA 101 A ALA 101 1 5 15 covale 1.802 none A CYS 14 A SG CYS 14 1_555 A HEC 105 B CAB HEC 1_555 covale 1.820 none A CYS 17 A SG CYS 17 1_555 A HEC 105 B CAC HEC 1_555 metalc 1.971 A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 metalc 2.678 A MET 80 A SD MET 80 1_555 A HEC 105 B FE HEC 1_555 ELECTRON TRANSPORT CYTOCHROME C, ORGANIC SOLVENT, ELECTRON TRANSPORT CYC_HORSE UNP 1 1 P00004 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM IFAGIKKKTEREDLIAYLKKATNE 1 104 1LC1 1 104 P00004 A 1 1 104 BINDING SITE FOR RESIDUE HEC A 105 A HEC 105 Software 17 A LYS 13 A LYS 13 17 1_555 A CYS 14 A CYS 14 17 1_555 A CYS 17 A CYS 17 17 1_555 A HIS 18 A HIS 18 17 1_555 A THR 28 A THR 28 17 1_555 A PRO 30 A PRO 30 17 1_555 A LEU 35 A LEU 35 17 1_555 A THR 40 A THR 40 17 1_555 A ASN 52 A ASN 52 17 1_555 A TRP 59 A TRP 59 17 1_555 A TYR 67 A TYR 67 17 1_555 A LEU 68 A LEU 68 17 1_555 A THR 78 A THR 78 17 1_555 A LYS 79 A LYS 79 17 1_555 A MET 80 A MET 80 17 1_555 A PHE 82 A PHE 82 17 1_555 A LEU 94 A LEU 94 17 1_555