0.016343
0.000000
0.000000
0.000000
0.017449
0.000000
0.000000
0.000000
0.032072
0.00000
0.00000
0.00000
GLU A 123 - PRO A 124 OMEGA = 114.65 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
Eck, M.
Harrison, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
61.190
57.310
31.180
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nature
NATUAS
0006
0028-0836
362
87
91
10.1038/362087a0
7680435
Recognition of a high-affinity phosphotyrosyl peptide by the Src homology-2 domain of p56lck.
1993
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
12388.826
P56==LCK== TYROSINE KINASE
2.7.1.112
INS(MET 118)
1
man
polymer
1473.515
PHOSPHOPEPTIDE EPQ(PHOSPHO)YEEIPIYL
1
man
polymer
18.015
water
65
nat
water
no
no
MANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRI
TFPGLHELVRHYTNASDGLCTRLSRPCQT
MANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRI
TFPGLHELVRHYTNASDGLCTRLSRPCQT
A
polypeptide(L)
no
yes
EPQ(PTR)EEIPIYL
EPQYEEIPIYL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)PLYSS
1.98
37.95
repository
Initial release
Version format compliance
Version format compliance
1
0
1995-10-15
1
1
2008-03-03
1
2
2011-07-13
Y
1994-12-12
REL
HOH
water
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
303
3
HOH
HOH
303
B
HOH
325
3
HOH
HOH
325
B
HOH
326
3
HOH
HOH
326
B
HOH
346
3
HOH
HOH
346
B
HOH
347
3
HOH
HOH
347
B
HOH
348
3
HOH
HOH
348
B
HOH
351
3
HOH
HOH
351
B
HOH
352
3
HOH
HOH
352
B
HOH
353
3
HOH
HOH
353
B
HOH
354
3
HOH
HOH
354
B
HOH
355
3
HOH
HOH
355
B
HOH
358
3
HOH
HOH
358
B
n
1
118
A
n
2
119
A
n
3
120
A
n
4
121
A
n
5
122
A
GLU
123
n
6
GLU
123
A
PRO
124
n
7
PRO
124
A
GLU
125
n
8
GLU
125
A
PRO
126
n
9
PRO
126
A
TRP
127
n
10
TRP
127
A
PHE
128
n
11
PHE
128
A
PHE
129
n
12
PHE
129
A
LYS
130
n
13
LYS
130
A
ASN
131
n
14
ASN
131
A
LEU
132
n
15
LEU
132
A
SER
133
n
16
SER
133
A
ARG
134
n
17
ARG
134
A
LYS
135
n
18
LYS
135
A
ASP
136
n
19
ASP
136
A
ALA
137
n
20
ALA
137
A
GLU
138
n
21
GLU
138
A
ARG
139
n
22
ARG
139
A
GLN
140
n
23
GLN
140
A
LEU
141
n
24
LEU
141
A
LEU
142
n
25
LEU
142
A
ALA
143
n
26
ALA
143
A
PRO
144
n
27
PRO
144
A
GLY
145
n
28
GLY
145
A
ASN
146
n
29
ASN
146
A
THR
147
n
30
THR
147
A
HIS
148
n
31
HIS
148
A
GLY
149
n
32
GLY
149
A
SER
150
n
33
SER
150
A
PHE
151
n
34
PHE
151
A
LEU
152
n
35
LEU
152
A
ILE
153
n
36
ILE
153
A
ARG
154
n
37
ARG
154
A
GLU
155
n
38
GLU
155
A
SER
156
n
39
SER
156
A
GLU
157
n
40
GLU
157
A
SER
158
n
41
SER
158
A
THR
159
n
42
THR
159
A
ALA
160
n
43
ALA
160
A
GLY
161
n
44
GLY
161
A
SER
162
n
45
SER
162
A
PHE
163
n
46
PHE
163
A
SER
164
n
47
SER
164
A
LEU
165
n
48
LEU
165
A
SER
166
n
49
SER
166
A
VAL
167
n
50
VAL
167
A
ARG
168
n
51
ARG
168
A
ASP
169
n
52
ASP
169
A
PHE
170
n
53
PHE
170
A
ASP
171
n
54
ASP
171
A
GLN
172
n
55
GLN
172
A
ASN
173
n
56
ASN
173
A
GLN
174
n
57
GLN
174
A
GLY
175
n
58
GLY
175
A
GLU
176
n
59
GLU
176
A
VAL
177
n
60
VAL
177
A
VAL
178
n
61
VAL
178
A
LYS
179
n
62
LYS
179
A
HIS
180
n
63
HIS
180
A
TYR
181
n
64
TYR
181
A
LYS
182
n
65
LYS
182
A
ILE
183
n
66
ILE
183
A
ARG
184
n
67
ARG
184
A
ASN
185
n
68
ASN
185
A
LEU
186
n
69
LEU
186
A
ASP
187
n
70
ASP
187
A
ASN
188
n
71
ASN
188
A
GLY
189
n
72
GLY
189
A
GLY
190
n
73
GLY
190
A
PHE
191
n
74
PHE
191
A
TYR
192
n
75
TYR
192
A
ILE
193
n
76
ILE
193
A
SER
194
n
77
SER
194
A
PRO
195
n
78
PRO
195
A
ARG
196
n
79
ARG
196
A
ILE
197
n
80
ILE
197
A
THR
198
n
81
THR
198
A
PHE
199
n
82
PHE
199
A
PRO
200
n
83
PRO
200
A
GLY
201
n
84
GLY
201
A
LEU
202
n
85
LEU
202
A
HIS
203
n
86
HIS
203
A
GLU
204
n
87
GLU
204
A
LEU
205
n
88
LEU
205
A
VAL
206
n
89
VAL
206
A
ARG
207
n
90
ARG
207
A
HIS
208
n
91
HIS
208
A
TYR
209
n
92
TYR
209
A
THR
210
n
93
THR
210
A
ASN
211
n
94
ASN
211
A
ALA
212
n
95
ALA
212
A
SER
213
n
96
SER
213
A
ASP
214
n
97
ASP
214
A
GLY
215
n
98
GLY
215
A
LEU
216
n
99
LEU
216
A
CYS
217
n
100
CYS
217
A
THR
218
n
101
THR
218
A
ARG
219
n
102
ARG
219
A
LEU
220
n
103
LEU
220
A
SER
221
n
104
SER
221
A
ARG
222
n
105
ARG
222
A
PRO
223
n
106
PRO
223
A
CYS
224
n
107
CYS
224
A
GLN
225
n
108
GLN
225
A
THR
226
n
109
THR
226
A
GLU
201
n
1
GLU
201
B
PRO
202
n
2
PRO
202
B
GLN
203
n
3
GLN
203
B
PTR
204
n
4
PTR
204
B
GLU
205
n
5
GLU
205
B
GLU
206
n
6
GLU
206
B
ILE
207
n
7
ILE
207
B
PRO
208
n
8
PRO
208
B
ILE
209
n
9
ILE
209
B
TYR
210
n
10
TYR
210
B
LEU
211
n
11
LEU
211
B
author_and_software_defined_assembly
PISA
2
dimeric
1190
-7
6890
B
PTR
204
O-PHOSPHOTYROSINE
B
PTR
4
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
152
A
O
LEU
35
A
N
SER
166
A
N
SER
49
A
O
PHE
163
A
O
PHE
46
A
N
ILE
183
A
N
ILE
66
A
O
ARG
184
A
O
ARG
67
A
N
TYR
192
A
N
TYR
75
1
A
CG
GLU
123
A
CG
GLU
6
1
Y
1
A
CD
GLU
123
A
CD
GLU
6
1
Y
1
A
OE1
GLU
123
A
OE1
GLU
6
1
Y
1
A
OE2
GLU
123
A
OE2
GLU
6
1
Y
1
A
MET
118
A
MET
1
1
Y
1
A
ALA
119
A
ALA
2
1
Y
1
A
ASN
120
A
ASN
3
1
Y
1
A
SER
121
A
SER
4
1
Y
1
A
LEU
122
A
LEU
5
1
Y
1
A
A
GLU
PRO
123
124
114.65
1
A
ARG
139
0.120
SIDE CHAIN
1
A
ARG
154
0.177
SIDE CHAIN
1
A
ARG
168
0.225
SIDE CHAIN
1
A
ARG
184
0.193
SIDE CHAIN
1
A
ARG
196
0.258
SIDE CHAIN
1
A
ARG
207
0.111
SIDE CHAIN
1
A
ARG
219
0.250
SIDE CHAIN
1
A
ARG
222
0.108
SIDE CHAIN
1
A
PRO
124
-54.44
103.55
1
A
THR
147
-142.41
-158.65
1
A
ASN
188
61.40
-106.83
1
A
SER
221
-106.87
-78.92
1
A
CYS
224
-38.08
118.96
0.2080000
0.2080000
1.8
1
1.8
65
1002
0
0
937
0.013
1.485
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
P56LCK TYROSINE KINASE, PHOSPHOPEPTIDE EPQ(PHOSPHO)YEEIPIYL, PHOSPHONO GROUP
SH2 (SRC HOMOLOGY-2) DOMAIN OF HUMAN P56-LCK TYROSINE KINASE COMPLEXED WITH THE 11 RESIDUE PHOSPHOTYROSYL PEPTIDE EPQPYEEIPIYL
1
N
N
2
N
N
3
N
N
3
N
N
A
ARG
134
A
ARG
17
HELX_P
A
LEU
141
A
LEU
24
1
1
8
A
LEU
202
A
LEU
85
HELX_P
A
ASN
211
A
ASN
94
1
2
10
covale
1.334
B
GLN
203
B
C
GLN
3
1_555
B
PTR
204
B
N
PTR
4
1_555
covale
1.328
B
PTR
204
B
C
PTR
4
1_555
B
GLU
205
B
N
GLU
5
1_555
COMPLEX (KINASE/PEPTIDE)
COMPLEX (KINASE-PEPTIDE), COMPLEX (KINASE-PEPTIDE) complex
LCK_HUMAN
UNP
1
118
P06239
TAMI_POVHA
UNP
2
321
P03079
118
225
1LCJ
119
226
P06239
A
1
2
109
321
331
1LCJ
201
211
P03079
B
2
1
11
3
2
anti-parallel
anti-parallel
anti-parallel
A
PHE
151
A
PHE
34
A
GLU
155
A
GLU
38
A
PHE
163
A
PHE
46
A
ASP
171
A
ASP
54
A
GLY
175
A
GLY
58
A
ILE
183
A
ILE
66
A
ARG
184
A
ARG
67
A
LEU
186
A
LEU
69
A
GLY
190
A
GLY
73
A
TYR
192
A
TYR
75
18
P 21 21 2