0.016343 0.000000 0.000000 0.000000 0.017449 0.000000 0.000000 0.000000 0.032072 0.00000 0.00000 0.00000 GLU A 123 - PRO A 124 OMEGA = 114.65 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION Eck, M. Harrison, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 61.190 57.310 31.180 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C9 H12 N O6 P 261.168 n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 0028-0836 362 87 91 10.1038/362087a0 7680435 Recognition of a high-affinity phosphotyrosyl peptide by the Src homology-2 domain of p56lck. 1993 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 12388.826 P56==LCK== TYROSINE KINASE 2.7.1.112 INS(MET 118) 1 man polymer 1473.515 PHOSPHOPEPTIDE EPQ(PHOSPHO)YEEIPIYL 1 man polymer 18.015 water 65 nat water no no MANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRI TFPGLHELVRHYTNASDGLCTRLSRPCQT MANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRI TFPGLHELVRHYTNASDGLCTRLSRPCQT A polypeptide(L) no yes EPQ(PTR)EEIPIYL EPQYEEIPIYL B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli BL21(DE3)PLYSS 1.98 37.95 repository Initial release Version format compliance Version format compliance 1 0 1995-10-15 1 1 2008-03-03 1 2 2011-07-13 Y 1994-12-12 REL HOH water HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 321 3 HOH HOH 321 A HOH 322 3 HOH HOH 322 A HOH 323 3 HOH HOH 323 A HOH 324 3 HOH HOH 324 A HOH 327 3 HOH HOH 327 A HOH 328 3 HOH HOH 328 A HOH 329 3 HOH HOH 329 A HOH 330 3 HOH HOH 330 A HOH 331 3 HOH HOH 331 A HOH 332 3 HOH HOH 332 A HOH 333 3 HOH HOH 333 A HOH 334 3 HOH HOH 334 A HOH 335 3 HOH HOH 335 A HOH 336 3 HOH HOH 336 A HOH 337 3 HOH HOH 337 A HOH 338 3 HOH HOH 338 A HOH 339 3 HOH HOH 339 A HOH 340 3 HOH HOH 340 A HOH 341 3 HOH HOH 341 A HOH 342 3 HOH HOH 342 A HOH 343 3 HOH HOH 343 A HOH 344 3 HOH HOH 344 A HOH 345 3 HOH HOH 345 A HOH 349 3 HOH HOH 349 A HOH 350 3 HOH HOH 350 A HOH 356 3 HOH HOH 356 A HOH 357 3 HOH HOH 357 A HOH 359 3 HOH HOH 359 A HOH 360 3 HOH HOH 360 A HOH 361 3 HOH HOH 361 A HOH 362 3 HOH HOH 362 A HOH 363 3 HOH HOH 363 A HOH 364 3 HOH HOH 364 A HOH 365 3 HOH HOH 365 A HOH 303 3 HOH HOH 303 B HOH 325 3 HOH HOH 325 B HOH 326 3 HOH HOH 326 B HOH 346 3 HOH HOH 346 B HOH 347 3 HOH HOH 347 B HOH 348 3 HOH HOH 348 B HOH 351 3 HOH HOH 351 B HOH 352 3 HOH HOH 352 B HOH 353 3 HOH HOH 353 B HOH 354 3 HOH HOH 354 B HOH 355 3 HOH HOH 355 B HOH 358 3 HOH HOH 358 B n 1 118 A n 2 119 A n 3 120 A n 4 121 A n 5 122 A GLU 123 n 6 GLU 123 A PRO 124 n 7 PRO 124 A GLU 125 n 8 GLU 125 A PRO 126 n 9 PRO 126 A TRP 127 n 10 TRP 127 A PHE 128 n 11 PHE 128 A PHE 129 n 12 PHE 129 A LYS 130 n 13 LYS 130 A ASN 131 n 14 ASN 131 A LEU 132 n 15 LEU 132 A SER 133 n 16 SER 133 A ARG 134 n 17 ARG 134 A LYS 135 n 18 LYS 135 A ASP 136 n 19 ASP 136 A ALA 137 n 20 ALA 137 A GLU 138 n 21 GLU 138 A ARG 139 n 22 ARG 139 A GLN 140 n 23 GLN 140 A LEU 141 n 24 LEU 141 A LEU 142 n 25 LEU 142 A ALA 143 n 26 ALA 143 A PRO 144 n 27 PRO 144 A GLY 145 n 28 GLY 145 A ASN 146 n 29 ASN 146 A THR 147 n 30 THR 147 A HIS 148 n 31 HIS 148 A GLY 149 n 32 GLY 149 A SER 150 n 33 SER 150 A PHE 151 n 34 PHE 151 A LEU 152 n 35 LEU 152 A ILE 153 n 36 ILE 153 A ARG 154 n 37 ARG 154 A GLU 155 n 38 GLU 155 A SER 156 n 39 SER 156 A GLU 157 n 40 GLU 157 A SER 158 n 41 SER 158 A THR 159 n 42 THR 159 A ALA 160 n 43 ALA 160 A GLY 161 n 44 GLY 161 A SER 162 n 45 SER 162 A PHE 163 n 46 PHE 163 A SER 164 n 47 SER 164 A LEU 165 n 48 LEU 165 A SER 166 n 49 SER 166 A VAL 167 n 50 VAL 167 A ARG 168 n 51 ARG 168 A ASP 169 n 52 ASP 169 A PHE 170 n 53 PHE 170 A ASP 171 n 54 ASP 171 A GLN 172 n 55 GLN 172 A ASN 173 n 56 ASN 173 A GLN 174 n 57 GLN 174 A GLY 175 n 58 GLY 175 A GLU 176 n 59 GLU 176 A VAL 177 n 60 VAL 177 A VAL 178 n 61 VAL 178 A LYS 179 n 62 LYS 179 A HIS 180 n 63 HIS 180 A TYR 181 n 64 TYR 181 A LYS 182 n 65 LYS 182 A ILE 183 n 66 ILE 183 A ARG 184 n 67 ARG 184 A ASN 185 n 68 ASN 185 A LEU 186 n 69 LEU 186 A ASP 187 n 70 ASP 187 A ASN 188 n 71 ASN 188 A GLY 189 n 72 GLY 189 A GLY 190 n 73 GLY 190 A PHE 191 n 74 PHE 191 A TYR 192 n 75 TYR 192 A ILE 193 n 76 ILE 193 A SER 194 n 77 SER 194 A PRO 195 n 78 PRO 195 A ARG 196 n 79 ARG 196 A ILE 197 n 80 ILE 197 A THR 198 n 81 THR 198 A PHE 199 n 82 PHE 199 A PRO 200 n 83 PRO 200 A GLY 201 n 84 GLY 201 A LEU 202 n 85 LEU 202 A HIS 203 n 86 HIS 203 A GLU 204 n 87 GLU 204 A LEU 205 n 88 LEU 205 A VAL 206 n 89 VAL 206 A ARG 207 n 90 ARG 207 A HIS 208 n 91 HIS 208 A TYR 209 n 92 TYR 209 A THR 210 n 93 THR 210 A ASN 211 n 94 ASN 211 A ALA 212 n 95 ALA 212 A SER 213 n 96 SER 213 A ASP 214 n 97 ASP 214 A GLY 215 n 98 GLY 215 A LEU 216 n 99 LEU 216 A CYS 217 n 100 CYS 217 A THR 218 n 101 THR 218 A ARG 219 n 102 ARG 219 A LEU 220 n 103 LEU 220 A SER 221 n 104 SER 221 A ARG 222 n 105 ARG 222 A PRO 223 n 106 PRO 223 A CYS 224 n 107 CYS 224 A GLN 225 n 108 GLN 225 A THR 226 n 109 THR 226 A GLU 201 n 1 GLU 201 B PRO 202 n 2 PRO 202 B GLN 203 n 3 GLN 203 B PTR 204 n 4 PTR 204 B GLU 205 n 5 GLU 205 B GLU 206 n 6 GLU 206 B ILE 207 n 7 ILE 207 B PRO 208 n 8 PRO 208 B ILE 209 n 9 ILE 209 B TYR 210 n 10 TYR 210 B LEU 211 n 11 LEU 211 B author_and_software_defined_assembly PISA 2 dimeric 1190 -7 6890 B PTR 204 O-PHOSPHOTYROSINE B PTR 4 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 152 A O LEU 35 A N SER 166 A N SER 49 A O PHE 163 A O PHE 46 A N ILE 183 A N ILE 66 A O ARG 184 A O ARG 67 A N TYR 192 A N TYR 75 1 A CG GLU 123 A CG GLU 6 1 Y 1 A CD GLU 123 A CD GLU 6 1 Y 1 A OE1 GLU 123 A OE1 GLU 6 1 Y 1 A OE2 GLU 123 A OE2 GLU 6 1 Y 1 A MET 118 A MET 1 1 Y 1 A ALA 119 A ALA 2 1 Y 1 A ASN 120 A ASN 3 1 Y 1 A SER 121 A SER 4 1 Y 1 A LEU 122 A LEU 5 1 Y 1 A A GLU PRO 123 124 114.65 1 A ARG 139 0.120 SIDE CHAIN 1 A ARG 154 0.177 SIDE CHAIN 1 A ARG 168 0.225 SIDE CHAIN 1 A ARG 184 0.193 SIDE CHAIN 1 A ARG 196 0.258 SIDE CHAIN 1 A ARG 207 0.111 SIDE CHAIN 1 A ARG 219 0.250 SIDE CHAIN 1 A ARG 222 0.108 SIDE CHAIN 1 A PRO 124 -54.44 103.55 1 A THR 147 -142.41 -158.65 1 A ASN 188 61.40 -106.83 1 A SER 221 -106.87 -78.92 1 A CYS 224 -38.08 118.96 0.2080000 0.2080000 1.8 1 1.8 65 1002 0 0 937 0.013 1.485 model building X-PLOR refinement X-PLOR phasing X-PLOR P56LCK TYROSINE KINASE, PHOSPHOPEPTIDE EPQ(PHOSPHO)YEEIPIYL, PHOSPHONO GROUP SH2 (SRC HOMOLOGY-2) DOMAIN OF HUMAN P56-LCK TYROSINE KINASE COMPLEXED WITH THE 11 RESIDUE PHOSPHOTYROSYL PEPTIDE EPQPYEEIPIYL 1 N N 2 N N 3 N N 3 N N A ARG 134 A ARG 17 HELX_P A LEU 141 A LEU 24 1 1 8 A LEU 202 A LEU 85 HELX_P A ASN 211 A ASN 94 1 2 10 covale 1.334 B GLN 203 B C GLN 3 1_555 B PTR 204 B N PTR 4 1_555 covale 1.328 B PTR 204 B C PTR 4 1_555 B GLU 205 B N GLU 5 1_555 COMPLEX (KINASE/PEPTIDE) COMPLEX (KINASE-PEPTIDE), COMPLEX (KINASE-PEPTIDE) complex LCK_HUMAN UNP 1 118 P06239 TAMI_POVHA UNP 2 321 P03079 118 225 1LCJ 119 226 P06239 A 1 2 109 321 331 1LCJ 201 211 P03079 B 2 1 11 3 2 anti-parallel anti-parallel anti-parallel A PHE 151 A PHE 34 A GLU 155 A GLU 38 A PHE 163 A PHE 46 A ASP 171 A ASP 54 A GLY 175 A GLY 58 A ILE 183 A ILE 66 A ARG 184 A ARG 67 A LEU 186 A LEU 69 A GLY 190 A GLY 73 A TYR 192 A TYR 75 18 P 21 21 2