0.010707
0.006181
-0.000000
0.000000
0.012363
-0.000000
0.000000
0.000000
0.004320
0.00000
0.00000
0.00000
Barnett, A.L.
Wensel, D.L.
Li, W.
Fass, D.
Cunningham, J.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
93.400
93.400
231.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-alpha-D-glucopyranose
N-acetyl-alpha-D-glucosamine; 2-acetamido-2-deoxy-alpha-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
D-saccharide, alpha linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C7 H16 O4
164.200
2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
non-polymer
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
S
C
N
76
S
C
N
77
S
C
N
78
R
C
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
R
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
S
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
N
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
C
N
139
N
O
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
N
C
N
153
N
C
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
Y
166
N
C
Y
167
N
N
Y
168
N
C
Y
169
N
C
Y
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
S
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
N
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
S
C
N
255
S
C
N
256
S
C
N
257
S
C
N
258
R
C
N
259
N
C
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
R
C
N
299
R
C
N
300
R
C
N
301
S
C
N
302
R
C
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
N
N
307
N
O
N
308
N
O
N
309
N
O
N
310
N
O
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
S
C
N
329
R
C
N
330
R
C
N
331
S
C
N
332
R
C
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
O
N
338
N
O
N
339
N
O
N
340
N
O
N
341
N
N
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
N
386
N
C
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
O
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
R
C
N
417
N
O
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
O
N
433
N
C
N
434
N
C
N
435
N
O
N
436
N
C
N
437
N
C
N
438
N
O
N
439
N
C
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
N
N
457
S
C
N
458
N
C
N
459
N
O
N
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
N
Y
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
N
470
N
O
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
N
N
484
S
C
N
485
N
C
N
486
N
O
N
487
N
C
Y
488
N
C
Y
489
N
C
Y
490
N
C
Y
491
N
C
Y
492
N
C
Y
493
N
C
N
494
N
O
N
495
N
O
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
N
N
508
S
C
N
509
N
C
N
510
N
O
N
511
N
C
N
512
N
C
N
513
N
C
N
514
N
O
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
doub
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
N
169
N
sing
Y
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
Y
451
N
doub
Y
452
N
sing
Y
453
N
sing
N
454
N
sing
Y
455
N
doub
Y
456
N
sing
Y
457
N
sing
N
458
N
sing
Y
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
doub
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
Y
479
N
doub
Y
480
N
sing
Y
481
N
sing
N
482
N
sing
Y
483
N
doub
N
484
N
sing
Y
485
N
doub
N
486
N
sing
Y
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
doub
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
US
J.Virol.
JOVIAM
0825
0022-538X
77
2717
2729
10.1128/JVI.77.4.2717-2729.2003
12552012
Structure and Mechanism of a Coreceptor for Infection by a pathogenic feline retrovirus
2003
10.2210/pdb1lcs/pdb
pdb_00001lcs
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-06-04
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.934
1.0
ID14-1
ESRF
0.934
SYNCHROTRON
ESRF BEAMLINE ID14-1
23410.158
FELINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN
2
man
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3
man
branched
951.875
2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
164.200
2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
1
syn
non-polymer
18.015
water
178
nat
water
no
no
NPSPHQVYNVTWTITNLVTGTKANATSMLGTLTDAFPTMYFDLCDIIGNTWNPSDQEPFPGYGCDQPMRRWQQRNTPFYV
CPGHANRKQCGGPQDGFCAVWGCETTGETYWRPTSSWDYITVKKGVTQGIYQCSGGGWCGPCYDKAVHSSTTGASEGGRC
NPLILQFTQKGRQTSWDGPKSWGLRLYRSGYDPIALFSVSRQVMTITPPQA
NPSPHQVYNVTWTITNLVTGTKANATSMLGTLTDAFPTMYFDLCDIIGNTWNPSDQEPFPGYGCDQPMRRWQQRNTPFYV
CPGHANRKQCGGPQDGFCAVWGCETTGETYWRPTSSWDYITVKKGVTQGIYQCSGGGWCGPCYDKAVHSSTTGASEGGRC
NPLILQFTQKGRQTSWDGPKSWGLRLYRSGYDPIALFSVSRQVMTITPPQA
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Gammaretrovirus
Feline leukemia virus
strain B/lambda-B1
fall armyworm
Spodoptera
sample
ENV
103916
Feline leukemia virus
7108
Spodoptera frugiperda
SF9 AND HI5
PLASMID
PVL1393
1
3.11
60.46
VAPOR DIFFUSION, HANGING DROP
5.6
PEG4000, ammonium acetate, sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_special_symmetry
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Source and taxonomy
Version format compliance
Atomic model
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2003-04-08
1
1
2008-04-28
1
2
2011-07-13
1
3
2011-11-16
2
0
2020-07-29
2
1
2023-08-16
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_special_symmetry.label_asym_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
C
NAG
401
n
C
NAG
1
C
NAG
402
n
C
NAG
2
D
NAG
501
n
D
NAG
1
D
NAG
502
n
D
NAG
2
E
NAG
601
n
E
NAG
1
E
NAG
602
n
E
NAG
2
F
NAG
701
n
F
NAG
1
F
NAG
702
n
F
NAG
2
F
MAN
703
n
F
MAN
3
F
MAN
704
n
F
BMA
4
F
NAG
705
n
F
NDG
5
DManpb
b-D-mannopyranose
b-D-Manp
Man
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
DGlcpNAca
N-acetyl-a-D-glucopyranosamine
a-D-GlcpNAc
GlcNAc
Receptor-Binding Domain of Friend Murine Leukemia Virus
RCSB
Y
RCSB
2002-04-06
REL
REL
oligosaccharide
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
2
PDB-CARE
LINUCS
DGlcpNAca1-2DManpb1-6DManpa1-4DGlcpNAcb1-4DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/4,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5][a1122h-1b_1-5][a2122h-1a_1-5_2*NCC/3=O]/1-1-2-3-4/a4-b1_b4-c1_c6-d1_d2-e1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-Manp]{[(6+1)][b-D-Manp]{[(2+1)][a-D-GlcpNAc]{}}}}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
C1
O4
MAN
NAG
3
2
3
O1
HO4
sing
C1
O6
BMA
MAN
4
3
3
O1
HO6
sing
C1
O2
NDG
BMA
5
4
3
O1
HO2
sing
n
n
n
n
n
n
n
TOE
2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
HOH
water
1AOL
PDB ENTRY 1AOL
PDB
experimental model
15P
119
4
TOE
TOE
219
A
TIP
6
5
HOH
HOH
503
A
TIP
7
5
HOH
HOH
504
A
TIP
8
5
HOH
HOH
505
A
TIP
9
5
HOH
HOH
506
A
TIP
10
5
HOH
HOH
507
A
TIP
11
5
HOH
HOH
508
A
TIP
12
5
HOH
HOH
509
A
TIP
13
5
HOH
HOH
510
A
TIP
14
5
HOH
HOH
511
A
TIP
15
5
HOH
HOH
512
A
TIP
16
5
HOH
HOH
513
A
TIP
17
5
HOH
HOH
514
A
TIP
18
5
HOH
HOH
515
A
TIP
19
5
HOH
HOH
516
A
TIP
20
5
HOH
HOH
517
A
TIP
21
5
HOH
HOH
518
A
TIP
22
5
HOH
HOH
519
A
TIP
23
5
HOH
HOH
520
A
TIP
24
5
HOH
HOH
521
A
TIP
25
5
HOH
HOH
522
A
TIP
26
5
HOH
HOH
523
A
TIP
27
5
HOH
HOH
524
A
TIP
28
5
HOH
HOH
525
A
TIP
29
5
HOH
HOH
526
A
TIP
30
5
HOH
HOH
527
A
TIP
31
5
HOH
HOH
528
A
TIP
32
5
HOH
HOH
529
A
TIP
33
5
HOH
HOH
530
A
TIP
34
5
HOH
HOH
531
A
TIP
35
5
HOH
HOH
532
A
TIP
36
5
HOH
HOH
533
A
TIP
37
5
HOH
HOH
534
A
TIP
38
5
HOH
HOH
535
A
TIP
39
5
HOH
HOH
536
A
TIP
40
5
HOH
HOH
537
A
TIP
41
5
HOH
HOH
538
A
TIP
42
5
HOH
HOH
539
A
TIP
43
5
HOH
HOH
540
A
TIP
44
5
HOH
HOH
541
A
TIP
45
5
HOH
HOH
542
A
TIP
46
5
HOH
HOH
543
A
TIP
47
5
HOH
HOH
544
A
TIP
48
5
HOH
HOH
545
A
TIP
49
5
HOH
HOH
546
A
TIP
50
5
HOH
HOH
547
A
TIP
51
5
HOH
HOH
548
A
TIP
52
5
HOH
HOH
549
A
TIP
59
5
HOH
HOH
550
A
TIP
60
5
HOH
HOH
551
A
TIP
61
5
HOH
HOH
552
A
TIP
62
5
HOH
HOH
553
A
TIP
63
5
HOH
HOH
554
A
TIP
64
5
HOH
HOH
555
A
TIP
65
5
HOH
HOH
556
A
TIP
66
5
HOH
HOH
557
A
TIP
67
5
HOH
HOH
558
A
TIP
68
5
HOH
HOH
559
A
TIP
69
5
HOH
HOH
560
A
TIP
70
5
HOH
HOH
561
A
TIP
71
5
HOH
HOH
562
A
TIP
72
5
HOH
HOH
563
A
TIP
73
5
HOH
HOH
564
A
TIP
74
5
HOH
HOH
565
A
TIP
75
5
HOH
HOH
566
A
TIP
76
5
HOH
HOH
567
A
TIP
77
5
HOH
HOH
568
A
TIP
78
5
HOH
HOH
569
A
TIP
79
5
HOH
HOH
570
A
TIP
80
5
HOH
HOH
571
A
TIP
81
5
HOH
HOH
572
A
TIP
82
5
HOH
HOH
573
A
TIP
83
5
HOH
HOH
574
A
TIP
104
5
HOH
HOH
575
A
TIP
105
5
HOH
HOH
576
A
TIP
106
5
HOH
HOH
577
A
TIP
107
5
HOH
HOH
578
A
TIP
108
5
HOH
HOH
579
A
TIP
109
5
HOH
HOH
580
A
TIP
110
5
HOH
HOH
581
A
TIP
111
5
HOH
HOH
582
A
TIP
112
5
HOH
HOH
583
A
TIP
113
5
HOH
HOH
584
A
TIP
114
5
HOH
HOH
585
A
TIP
115
5
HOH
HOH
586
A
TIP
116
5
HOH
HOH
587
A
TIP
117
5
HOH
HOH
588
A
TIP
118
5
HOH
HOH
589
A
TIP
119
5
HOH
HOH
590
A
TIP
120
5
HOH
HOH
591
A
TIP
121
5
HOH
HOH
592
A
TIP
122
5
HOH
HOH
593
A
TIP
142
5
HOH
HOH
594
A
TIP
143
5
HOH
HOH
595
A
TIP
144
5
HOH
HOH
596
A
TIP
145
5
HOH
HOH
597
A
TIP
146
5
HOH
HOH
598
A
TIP
147
5
HOH
HOH
599
A
TIP
148
5
HOH
HOH
600
A
TIP
149
5
HOH
HOH
601
A
TIP
162
5
HOH
HOH
602
A
TIP
165
5
HOH
HOH
603
A
TIP
166
5
HOH
HOH
604
A
TIP
167
5
HOH
HOH
605
A
TIP
168
5
HOH
HOH
606
A
TIP
169
5
HOH
HOH
607
A
TIP
170
5
HOH
HOH
608
A
TIP
1
5
HOH
HOH
706
B
TIP
2
5
HOH
HOH
707
B
TIP
3
5
HOH
HOH
708
B
TIP
4
5
HOH
HOH
709
B
TIP
5
5
HOH
HOH
710
B
TIP
53
5
HOH
HOH
711
B
TIP
54
5
HOH
HOH
712
B
TIP
55
5
HOH
HOH
713
B
TIP
56
5
HOH
HOH
714
B
TIP
57
5
HOH
HOH
715
B
TIP
58
5
HOH
HOH
716
B
TIP
84
5
HOH
HOH
717
B
TIP
85
5
HOH
HOH
718
B
TIP
86
5
HOH
HOH
719
B
TIP
87
5
HOH
HOH
720
B
TIP
88
5
HOH
HOH
721
B
TIP
89
5
HOH
HOH
722
B
TIP
90
5
HOH
HOH
723
B
TIP
91
5
HOH
HOH
724
B
TIP
92
5
HOH
HOH
725
B
TIP
93
5
HOH
HOH
726
B
TIP
94
5
HOH
HOH
727
B
TIP
95
5
HOH
HOH
728
B
TIP
96
5
HOH
HOH
729
B
TIP
97
5
HOH
HOH
730
B
TIP
98
5
HOH
HOH
731
B
TIP
99
5
HOH
HOH
732
B
TIP
100
5
HOH
HOH
733
B
TIP
101
5
HOH
HOH
734
B
TIP
102
5
HOH
HOH
735
B
TIP
103
5
HOH
HOH
736
B
TIP
123
5
HOH
HOH
737
B
TIP
124
5
HOH
HOH
738
B
TIP
125
5
HOH
HOH
739
B
TIP
126
5
HOH
HOH
740
B
TIP
127
5
HOH
HOH
741
B
TIP
128
5
HOH
HOH
742
B
TIP
129
5
HOH
HOH
743
B
TIP
130
5
HOH
HOH
744
B
TIP
131
5
HOH
HOH
745
B
TIP
132
5
HOH
HOH
746
B
TIP
133
5
HOH
HOH
747
B
TIP
134
5
HOH
HOH
748
B
TIP
135
5
HOH
HOH
749
B
TIP
136
5
HOH
HOH
750
B
TIP
137
5
HOH
HOH
751
B
TIP
138
5
HOH
HOH
752
B
TIP
139
5
HOH
HOH
753
B
TIP
140
5
HOH
HOH
754
B
TIP
141
5
HOH
HOH
755
B
TIP
150
5
HOH
HOH
756
B
TIP
151
5
HOH
HOH
757
B
TIP
152
5
HOH
HOH
758
B
TIP
153
5
HOH
HOH
759
B
TIP
154
5
HOH
HOH
760
B
TIP
155
5
HOH
HOH
761
B
TIP
156
5
HOH
HOH
762
B
TIP
157
5
HOH
HOH
763
B
TIP
158
5
HOH
HOH
764
B
TIP
159
5
HOH
HOH
765
B
TIP
160
5
HOH
HOH
766
B
TIP
161
5
HOH
HOH
767
B
TIP
163
5
HOH
HOH
768
B
TIP
164
5
HOH
HOH
769
B
TIP
171
5
HOH
HOH
770
B
TIP
172
5
HOH
HOH
771
B
TIP
173
5
HOH
HOH
772
B
TIP
174
5
HOH
HOH
773
B
TIP
175
5
HOH
HOH
774
B
TIP
176
5
HOH
HOH
775
B
TIP
177
5
HOH
HOH
776
B
TIP
178
5
HOH
HOH
777
B
n
1
1
A
n
2
2
A
n
3
3
A
PRO
4
n
4
PRO
4
A
HIS
5
n
5
HIS
5
A
GLN
6
n
6
GLN
6
A
VAL
7
n
7
VAL
7
A
TYR
8
n
8
TYR
8
A
ASN
9
n
9
ASN
9
A
VAL
10
n
10
VAL
10
A
THR
11
n
11
THR
11
A
TRP
12
n
12
TRP
12
A
THR
13
n
13
THR
13
A
ILE
14
n
14
ILE
14
A
THR
15
n
15
THR
15
A
ASN
16
n
16
ASN
16
A
LEU
17
n
17
LEU
17
A
VAL
18
n
18
VAL
18
A
THR
19
n
19
THR
19
A
GLY
20
n
20
GLY
20
A
THR
21
n
21
THR
21
A
LYS
22
n
22
LYS
22
A
ALA
23
n
23
ALA
23
A
ASN
24
n
24
ASN
24
A
ALA
25
n
25
ALA
25
A
THR
26
n
26
THR
26
A
SER
27
n
27
SER
27
A
MET
28
n
28
MET
28
A
LEU
29
n
29
LEU
29
A
GLY
30
n
30
GLY
30
A
THR
31
n
31
THR
31
A
LEU
32
n
32
LEU
32
A
THR
33
n
33
THR
33
A
ASP
34
n
34
ASP
34
A
ALA
35
n
35
ALA
35
A
PHE
36
n
36
PHE
36
A
PRO
37
n
37
PRO
37
A
THR
38
n
38
THR
38
A
MET
39
n
39
MET
39
A
TYR
40
n
40
TYR
40
A
PHE
41
n
41
PHE
41
A
ASP
42
n
42
ASP
42
A
LEU
43
n
43
LEU
43
A
CYS
44
n
44
CYS
44
A
ASP
45
n
45
ASP
45
A
ILE
46
n
46
ILE
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
ASN
49
n
49
ASN
49
A
THR
50
n
50
THR
50
A
TRP
51
n
51
TRP
51
A
ASN
52
n
52
ASN
52
A
PRO
53
n
53
PRO
53
A
SER
54
n
54
SER
54
A
ASP
55
n
55
ASP
55
A
GLN
56
n
56
GLN
56
A
GLU
57
n
57
GLU
57
A
PRO
58
n
58
PRO
58
A
PHE
59
n
59
PHE
59
A
PRO
60
n
60
PRO
60
A
GLY
61
n
61
GLY
61
A
TYR
62
n
62
TYR
62
A
GLY
63
n
63
GLY
63
A
CYS
64
n
64
CYS
64
A
ASP
65
n
65
ASP
65
A
GLN
66
n
66
GLN
66
A
PRO
67
n
67
PRO
67
A
MET
68
n
68
MET
68
A
ARG
69
n
69
ARG
69
A
ARG
70
n
70
ARG
70
A
TRP
71
n
71
TRP
71
A
GLN
72
n
72
GLN
72
A
GLN
73
n
73
GLN
73
A
ARG
74
n
74
ARG
74
A
ASN
75
n
75
ASN
75
A
THR
76
n
76
THR
76
A
PRO
77
n
77
PRO
77
A
PHE
78
n
78
PHE
78
A
TYR
79
n
79
TYR
79
A
VAL
80
n
80
VAL
80
A
CYS
81
n
81
CYS
81
A
PRO
82
n
82
PRO
82
A
GLY
83
n
83
GLY
83
A
HIS
84
n
84
HIS
84
A
ALA
85
n
85
ALA
85
A
ASN
86
n
86
ASN
86
A
ARG
87
n
87
ARG
87
A
LYS
88
n
88
LYS
88
A
GLN
89
n
89
GLN
89
A
CYS
90
n
90
CYS
90
A
GLY
91
n
91
GLY
91
A
GLY
92
n
92
GLY
92
A
PRO
93
n
93
PRO
93
A
GLN
94
n
94
GLN
94
A
ASP
95
n
95
ASP
95
A
GLY
96
n
96
GLY
96
A
PHE
97
n
97
PHE
97
A
CYS
98
n
98
CYS
98
A
ALA
99
n
99
ALA
99
A
VAL
100
n
100
VAL
100
A
TRP
101
n
101
TRP
101
A
GLY
102
n
102
GLY
102
A
CYS
103
n
103
CYS
103
A
GLU
104
n
104
GLU
104
A
THR
105
n
105
THR
105
A
THR
106
n
106
THR
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
TYR
110
n
110
TYR
110
A
TRP
111
n
111
TRP
111
A
ARG
112
n
112
ARG
112
A
PRO
113
n
113
PRO
113
A
THR
114
n
114
THR
114
A
SER
115
n
115
SER
115
A
SER
116
n
116
SER
116
A
TRP
117
n
117
TRP
117
A
ASP
118
n
118
ASP
118
A
TYR
119
n
119
TYR
119
A
ILE
120
n
120
ILE
120
A
THR
121
n
121
THR
121
A
VAL
122
n
122
VAL
122
A
LYS
123
n
123
LYS
123
A
LYS
124
n
124
LYS
124
A
GLY
125
n
125
GLY
125
A
VAL
126
n
126
VAL
126
A
THR
127
n
127
THR
127
A
GLN
128
n
128
GLN
128
A
GLY
129
n
129
GLY
129
A
ILE
130
n
130
ILE
130
A
TYR
131
n
131
TYR
131
A
GLN
132
n
132
GLN
132
A
CYS
133
n
133
CYS
133
A
SER
134
n
134
SER
134
A
GLY
135
n
135
GLY
135
A
GLY
136
n
136
GLY
136
A
GLY
137
n
137
GLY
137
A
TRP
138
n
138
TRP
138
A
CYS
139
n
139
CYS
139
A
GLY
140
n
140
GLY
140
A
PRO
141
n
141
PRO
141
A
CYS
142
n
142
CYS
142
A
TYR
143
n
143
TYR
143
A
ASP
144
n
144
ASP
144
A
LYS
145
n
145
LYS
145
A
ALA
146
n
146
ALA
146
A
VAL
147
n
147
VAL
147
A
HIS
148
n
148
HIS
148
A
SER
149
n
149
SER
149
A
SER
150
n
150
SER
150
A
THR
151
n
151
THR
151
A
THR
152
n
152
THR
152
A
GLY
153
n
153
GLY
153
A
ALA
154
n
154
ALA
154
A
SER
155
n
155
SER
155
A
GLU
156
n
156
GLU
156
A
GLY
157
n
157
GLY
157
A
GLY
158
n
158
GLY
158
A
ARG
159
n
159
ARG
159
A
CYS
160
n
160
CYS
160
A
ASN
161
n
161
ASN
161
A
PRO
162
n
162
PRO
162
A
LEU
163
n
163
LEU
163
A
ILE
164
n
164
ILE
164
A
LEU
165
n
165
LEU
165
A
GLN
166
n
166
GLN
166
A
PHE
167
n
167
PHE
167
A
THR
168
n
168
THR
168
A
GLN
169
n
169
GLN
169
A
LYS
170
n
170
LYS
170
A
GLY
171
n
171
GLY
171
A
ARG
172
n
172
ARG
172
A
GLN
173
n
173
GLN
173
A
THR
174
n
174
THR
174
A
SER
175
n
175
SER
175
A
TRP
176
n
176
TRP
176
A
ASP
177
n
177
ASP
177
A
GLY
178
n
178
GLY
178
A
PRO
179
n
179
PRO
179
A
LYS
180
n
180
LYS
180
A
SER
181
n
181
SER
181
A
TRP
182
n
182
TRP
182
A
GLY
183
n
183
GLY
183
A
LEU
184
n
184
LEU
184
A
ARG
185
n
185
ARG
185
A
LEU
186
n
186
LEU
186
A
TYR
187
n
187
TYR
187
A
ARG
188
n
188
ARG
188
A
SER
189
n
189
SER
189
A
GLY
190
n
190
GLY
190
A
TYR
191
n
191
TYR
191
A
ASP
192
n
192
ASP
192
A
PRO
193
n
193
PRO
193
A
ILE
194
n
194
ILE
194
A
ALA
195
n
195
ALA
195
A
LEU
196
n
196
LEU
196
A
PHE
197
n
197
PHE
197
A
SER
198
n
198
SER
198
A
VAL
199
n
199
VAL
199
A
SER
200
n
200
SER
200
A
ARG
201
n
201
ARG
201
A
GLN
202
n
202
GLN
202
A
VAL
203
n
203
VAL
203
A
MET
204
n
204
MET
204
A
THR
205
n
205
THR
205
A
ILE
206
n
206
ILE
206
A
THR
207
n
207
THR
207
A
PRO
208
n
208
PRO
208
A
n
209
209
A
n
210
210
A
n
211
211
A
n
1
1
B
n
2
2
B
n
3
3
B
PRO
4
n
4
PRO
4
B
HIS
5
n
5
HIS
5
B
GLN
6
n
6
GLN
6
B
VAL
7
n
7
VAL
7
B
TYR
8
n
8
TYR
8
B
ASN
9
n
9
ASN
9
B
VAL
10
n
10
VAL
10
B
THR
11
n
11
THR
11
B
TRP
12
n
12
TRP
12
B
THR
13
n
13
THR
13
B
ILE
14
n
14
ILE
14
B
THR
15
n
15
THR
15
B
ASN
16
n
16
ASN
16
B
LEU
17
n
17
LEU
17
B
VAL
18
n
18
VAL
18
B
THR
19
n
19
THR
19
B
GLY
20
n
20
GLY
20
B
THR
21
n
21
THR
21
B
LYS
22
n
22
LYS
22
B
ALA
23
n
23
ALA
23
B
ASN
24
n
24
ASN
24
B
ALA
25
n
25
ALA
25
B
THR
26
n
26
THR
26
B
SER
27
n
27
SER
27
B
MET
28
n
28
MET
28
B
LEU
29
n
29
LEU
29
B
GLY
30
n
30
GLY
30
B
THR
31
n
31
THR
31
B
LEU
32
n
32
LEU
32
B
THR
33
n
33
THR
33
B
ASP
34
n
34
ASP
34
B
ALA
35
n
35
ALA
35
B
PHE
36
n
36
PHE
36
B
PRO
37
n
37
PRO
37
B
THR
38
n
38
THR
38
B
MET
39
n
39
MET
39
B
TYR
40
n
40
TYR
40
B
PHE
41
n
41
PHE
41
B
ASP
42
n
42
ASP
42
B
LEU
43
n
43
LEU
43
B
CYS
44
n
44
CYS
44
B
ASP
45
n
45
ASP
45
B
ILE
46
n
46
ILE
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
ASN
49
n
49
ASN
49
B
THR
50
n
50
THR
50
B
TRP
51
n
51
TRP
51
B
ASN
52
n
52
ASN
52
B
PRO
53
n
53
PRO
53
B
SER
54
n
54
SER
54
B
ASP
55
n
55
ASP
55
B
GLN
56
n
56
GLN
56
B
GLU
57
n
57
GLU
57
B
PRO
58
n
58
PRO
58
B
PHE
59
n
59
PHE
59
B
PRO
60
n
60
PRO
60
B
GLY
61
n
61
GLY
61
B
TYR
62
n
62
TYR
62
B
GLY
63
n
63
GLY
63
B
CYS
64
n
64
CYS
64
B
ASP
65
n
65
ASP
65
B
GLN
66
n
66
GLN
66
B
PRO
67
n
67
PRO
67
B
MET
68
n
68
MET
68
B
ARG
69
n
69
ARG
69
B
ARG
70
n
70
ARG
70
B
TRP
71
n
71
TRP
71
B
GLN
72
n
72
GLN
72
B
GLN
73
n
73
GLN
73
B
ARG
74
n
74
ARG
74
B
ASN
75
n
75
ASN
75
B
THR
76
n
76
THR
76
B
PRO
77
n
77
PRO
77
B
PHE
78
n
78
PHE
78
B
TYR
79
n
79
TYR
79
B
VAL
80
n
80
VAL
80
B
CYS
81
n
81
CYS
81
B
PRO
82
n
82
PRO
82
B
GLY
83
n
83
GLY
83
B
HIS
84
n
84
HIS
84
B
ALA
85
n
85
ALA
85
B
ASN
86
n
86
ASN
86
B
ARG
87
n
87
ARG
87
B
LYS
88
n
88
LYS
88
B
GLN
89
n
89
GLN
89
B
CYS
90
n
90
CYS
90
B
GLY
91
n
91
GLY
91
B
GLY
92
n
92
GLY
92
B
PRO
93
n
93
PRO
93
B
GLN
94
n
94
GLN
94
B
ASP
95
n
95
ASP
95
B
GLY
96
n
96
GLY
96
B
PHE
97
n
97
PHE
97
B
CYS
98
n
98
CYS
98
B
ALA
99
n
99
ALA
99
B
VAL
100
n
100
VAL
100
B
TRP
101
n
101
TRP
101
B
GLY
102
n
102
GLY
102
B
CYS
103
n
103
CYS
103
B
GLU
104
n
104
GLU
104
B
THR
105
n
105
THR
105
B
THR
106
n
106
THR
106
B
GLY
107
n
107
GLY
107
B
GLU
108
n
108
GLU
108
B
THR
109
n
109
THR
109
B
TYR
110
n
110
TYR
110
B
TRP
111
n
111
TRP
111
B
ARG
112
n
112
ARG
112
B
PRO
113
n
113
PRO
113
B
THR
114
n
114
THR
114
B
SER
115
n
115
SER
115
B
SER
116
n
116
SER
116
B
TRP
117
n
117
TRP
117
B
ASP
118
n
118
ASP
118
B
TYR
119
n
119
TYR
119
B
ILE
120
n
120
ILE
120
B
THR
121
n
121
THR
121
B
VAL
122
n
122
VAL
122
B
LYS
123
n
123
LYS
123
B
LYS
124
n
124
LYS
124
B
GLY
125
n
125
GLY
125
B
VAL
126
n
126
VAL
126
B
THR
127
n
127
THR
127
B
GLN
128
n
128
GLN
128
B
GLY
129
n
129
GLY
129
B
ILE
130
n
130
ILE
130
B
TYR
131
n
131
TYR
131
B
GLN
132
n
132
GLN
132
B
CYS
133
n
133
CYS
133
B
SER
134
n
134
SER
134
B
GLY
135
n
135
GLY
135
B
GLY
136
n
136
GLY
136
B
GLY
137
n
137
GLY
137
B
TRP
138
n
138
TRP
138
B
CYS
139
n
139
CYS
139
B
GLY
140
n
140
GLY
140
B
PRO
141
n
141
PRO
141
B
CYS
142
n
142
CYS
142
B
TYR
143
n
143
TYR
143
B
ASP
144
n
144
ASP
144
B
LYS
145
n
145
LYS
145
B
ALA
146
n
146
ALA
146
B
VAL
147
n
147
VAL
147
B
HIS
148
n
148
HIS
148
B
SER
149
n
149
SER
149
B
SER
150
n
150
SER
150
B
THR
151
n
151
THR
151
B
THR
152
n
152
THR
152
B
GLY
153
n
153
GLY
153
B
ALA
154
n
154
ALA
154
B
SER
155
n
155
SER
155
B
GLU
156
n
156
GLU
156
B
GLY
157
n
157
GLY
157
B
GLY
158
n
158
GLY
158
B
ARG
159
n
159
ARG
159
B
CYS
160
n
160
CYS
160
B
ASN
161
n
161
ASN
161
B
PRO
162
n
162
PRO
162
B
LEU
163
n
163
LEU
163
B
ILE
164
n
164
ILE
164
B
LEU
165
n
165
LEU
165
B
GLN
166
n
166
GLN
166
B
PHE
167
n
167
PHE
167
B
THR
168
n
168
THR
168
B
GLN
169
n
169
GLN
169
B
LYS
170
n
170
LYS
170
B
GLY
171
n
171
GLY
171
B
ARG
172
n
172
ARG
172
B
GLN
173
n
173
GLN
173
B
THR
174
n
174
THR
174
B
SER
175
n
175
SER
175
B
TRP
176
n
176
TRP
176
B
ASP
177
n
177
ASP
177
B
GLY
178
n
178
GLY
178
B
PRO
179
n
179
PRO
179
B
LYS
180
n
180
LYS
180
B
SER
181
n
181
SER
181
B
TRP
182
n
182
TRP
182
B
GLY
183
n
183
GLY
183
B
LEU
184
n
184
LEU
184
B
ARG
185
n
185
ARG
185
B
LEU
186
n
186
LEU
186
B
TYR
187
n
187
TYR
187
B
ARG
188
n
188
ARG
188
B
SER
189
n
189
SER
189
B
GLY
190
n
190
GLY
190
B
TYR
191
n
191
TYR
191
B
ASP
192
n
192
ASP
192
B
PRO
193
n
193
PRO
193
B
ILE
194
n
194
ILE
194
B
ALA
195
n
195
ALA
195
B
LEU
196
n
196
LEU
196
B
PHE
197
n
197
PHE
197
B
SER
198
n
198
SER
198
B
VAL
199
n
199
VAL
199
B
SER
200
n
200
SER
200
B
ARG
201
n
201
ARG
201
B
GLN
202
n
202
GLN
202
B
VAL
203
n
203
VAL
203
B
MET
204
n
204
MET
204
B
THR
205
n
205
THR
205
B
ILE
206
n
206
ILE
206
B
THR
207
n
207
THR
207
B
PRO
208
n
208
PRO
208
B
n
209
209
B
n
210
210
B
n
211
211
B
author_defined_assembly
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PISA
4
tetrameric
software_defined_assembly
PISA
2
dimeric
12690
32
39700
5940
22
20260
A
ASN
9
GLYCOSYLATION SITE
A
ASN
9
ASN
A
ASN
24
GLYCOSYLATION SITE
A
ASN
24
ASN
B
ASN
9
GLYCOSYLATION SITE
B
ASN
9
ASN
B
ASN
24
GLYCOSYLATION SITE
B
ASN
24
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_666
-y+1,-x+1,-z+7/6
crystal symmetry operation
46.7000000000
80.8867727135
270.0833333333
0.5000000000
0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
5_555
y,-x+y,z+1/6
crystal symmetry operation
0.0000000000
0.0000000000
38.5833333333
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_666
x-y+1,-y+1,-z+1
crystal symmetry operation
46.7000000000
80.8867727135
231.5000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_565
x,x-y+1,-z+5/6
crystal symmetry operation
-46.7000000000
80.8867727135
192.9166666667
A
O
THR
26
A
O
THR
26
A
N
TRP
12
A
N
TRP
12
A
N
THR
15
A
N
THR
15
A
O
SER
198
A
O
SER
198
A
O
ALA
195
A
O
ALA
195
A
N
LEU
184
A
N
LEU
184
A
O
GLY
183
A
O
GLY
183
A
N
CYS
81
A
N
CYS
81
A
N
VAL
80
A
N
VAL
80
A
O
THR
106
A
O
THR
106
A
N
PHE
41
A
N
PHE
41
A
O
LEU
163
A
O
LEU
163
A
O
ILE
164
A
O
ILE
164
A
N
LYS
123
A
N
LYS
123
A
N
TYR
131
A
N
TYR
131
A
O
CYS
139
A
O
CYS
139
B
O
ALA
23
B
O
ALA
23
B
N
ILE
14
B
N
ILE
14
B
N
THR
11
B
N
THR
11
B
O
GLN
202
B
O
GLN
202
B
O
PHE
197
B
O
PHE
197
B
N
TRP
182
B
N
TRP
182
B
O
GLY
183
B
O
GLY
183
B
N
CYS
81
B
N
CYS
81
B
N
PHE
78
B
N
PHE
78
B
O
GLU
108
B
O
GLU
108
B
N
MET
39
B
N
MET
39
B
O
LEU
165
B
O
LEU
165
B
O
ILE
164
B
O
ILE
164
B
N
LYS
123
B
N
LYS
123
B
N
TYR
131
B
N
TYR
131
B
O
CYS
139
B
O
CYS
139
1
A
HOH
588
H
HOH
1
A
HOH
599
H
HOH
1
A
ASN
1
A
ASN
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
SER
3
A
SER
3
1
Y
1
A
PRO
209
A
PRO
209
1
Y
1
A
GLN
210
A
GLN
210
1
Y
1
A
ALA
211
A
ALA
211
1
Y
1
B
ASN
1
B
ASN
1
1
Y
1
B
PRO
2
B
PRO
2
1
Y
1
B
SER
3
B
SER
3
1
Y
1
B
PRO
209
B
PRO
209
1
Y
1
B
GLN
210
B
GLN
210
1
Y
1
B
ALA
211
B
ALA
211
1
Y
1
8.01
1.10
114.20
122.21
A
A
A
CA
CB
SG
CYS
CYS
CYS
98
98
98
N
1
7.54
1.10
114.20
121.74
B
B
B
CA
CB
SG
CYS
CYS
CYS
98
98
98
N
1
A
PHE
59
36.38
66.43
1
A
SER
134
52.73
-97.10
1
A
HIS
148
-166.78
84.13
1
A
SER
150
82.85
-50.98
1
A
THR
151
-54.12
104.40
1
A
ALA
154
-39.82
122.54
1
A
CYS
160
-153.61
34.20
1
A
TRP
176
-116.02
62.87
1
B
PHE
59
39.15
66.42
1
B
ASN
75
-97.63
36.91
1
B
ARG
112
43.69
71.97
1
B
SER
134
-26.86
-53.50
1
B
HIS
148
-173.86
90.23
1
B
SER
149
-72.03
-162.16
1
B
CYS
160
-151.93
26.98
0.264
0.216
2.5
20.0
1494
21072
21010
random
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1AOL
Engh & Huber
2.5
20.0
178
3539
159
0
3202
0.007
1.32
2.5
20.0
1LCS
21072
21010
0.061
1
25.4
9
99.7
2.50
2.59
9.4
0.192
1
100
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
RECEPTOR-BINDING DOMAIN FROM SUBGROUP B FELINE LEUKEMIA VIRUS
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
CYS
44
A
CYS
44
HELX_P
A
ILE
46
A
ILE
46
5
1
3
A
GLN
66
A
GLN
66
HELX_P
A
ASN
75
A
ASN
75
1
2
10
A
ARG
87
A
ARG
87
HELX_P
A
GLY
91
A
GLY
91
5
3
5
A
GLY
92
A
GLY
92
HELX_P
A
GLY
96
A
GLY
96
5
4
5
A
SER
155
A
SER
155
HELX_P
A
ARG
159
A
ARG
159
5
5
5
A
THR
168
A
THR
168
HELX_P
A
THR
174
A
THR
174
1
6
7
B
CYS
44
B
CYS
44
HELX_P
B
ILE
46
B
ILE
46
5
7
3
B
GLN
66
B
GLN
66
HELX_P
B
ASN
75
B
ASN
75
1
8
10
B
GLY
92
B
GLY
92
HELX_P
B
GLY
96
B
GLY
96
5
9
5
B
SER
155
B
SER
155
HELX_P
B
ARG
159
B
ARG
159
5
10
5
B
GLN
169
B
GLN
169
HELX_P
B
GLN
173
B
GLN
173
5
11
5
disulf
2.041
A
CYS
44
A
SG
CYS
44
1_555
A
CYS
64
A
SG
CYS
64
1_555
disulf
2.030
A
CYS
81
A
SG
CYS
81
1_555
A
CYS
98
A
SG
CYS
98
1_555
disulf
2.037
A
CYS
90
A
SG
CYS
90
1_555
A
CYS
103
A
SG
CYS
103
1_555
disulf
2.035
A
CYS
133
A
SG
CYS
133
1_555
A
CYS
139
A
SG
CYS
139
1_555
disulf
2.039
A
CYS
142
A
SG
CYS
142
1_555
A
CYS
160
A
SG
CYS
160
1_555
disulf
2.037
B
CYS
44
B
SG
CYS
44
1_555
B
CYS
64
B
SG
CYS
64
1_555
disulf
2.026
B
CYS
81
B
SG
CYS
81
1_555
B
CYS
98
B
SG
CYS
98
1_555
disulf
2.038
B
CYS
90
B
SG
CYS
90
1_555
B
CYS
103
B
SG
CYS
103
1_555
disulf
2.036
B
CYS
133
B
SG
CYS
133
1_555
B
CYS
139
B
SG
CYS
139
1_555
disulf
2.045
B
CYS
142
B
SG
CYS
142
1_555
B
CYS
160
B
SG
CYS
160
1_555
covale
1.450
one
N-Glycosylation
A
ASN
9
A
ND2
ASN
9
1_555
C
NAG
1
C
C1
NAG
1_555
covale
1.452
one
N-Glycosylation
A
ASN
24
A
ND2
ASN
24
1_555
D
NAG
1
D
C1
NAG
1_555
covale
1.452
one
N-Glycosylation
B
ASN
9
B
ND2
ASN
9
1_555
E
NAG
1
E
C1
NAG
1_555
covale
1.453
one
N-Glycosylation
B
ASN
24
B
ND2
ASN
24
1_555
F
NAG
1
F
C1
NAG
1_555
covale
1.389
both
C
NAG
1
C
O4
NAG
1_555
C
NAG
2
C
C1
NAG
1_555
covale
1.396
both
D
NAG
1
D
O4
NAG
1_555
D
NAG
2
D
C1
NAG
1_555
covale
1.396
both
E
NAG
1
E
O4
NAG
1_555
E
NAG
2
E
C1
NAG
1_555
covale
1.393
both
F
NAG
1
F
O4
NAG
1_555
F
NAG
2
F
C1
NAG
1_555
covale
1.393
both
F
NAG
2
F
O4
NAG
1_555
F
MAN
3
F
C1
MAN
1_555
covale
1.407
both
F
MAN
3
F
O6
MAN
1_555
F
BMA
4
F
C1
BMA
1_555
covale
1.404
both
F
BMA
4
F
O2
BMA
1_555
F
NDG
5
F
C1
NDG
1_555
VIRAL PROTEIN
antiparallel beta-sandwich glycoprotein, Viral protein
A
THR
207
A
THR
207
1
A
PRO
208
A
PRO
208
-0.07
B
THR
207
B
THR
207
1
B
PRO
208
B
PRO
208
0.01
AAA43052
GB
1
35
323911
NPSPHQVYNVTWTITNLVTGTKANATSMLGTLTDAFPTMYFDLCDIIGNTWNPSDQEPFPGYGCDQPMRRWQQRNTPFYV
CPGHANRKQCGGPQDGFCAVWGCETTGETYWRPTSSWDYITVKKGVTQGIYQCSGGGWCGPCYDKAVHSSTTGASEGGRC
NPLILQFTQKGRQTSWDGPKSWGLRLYRSGYDPIALFSVSRQVMTITPPQA
35
245
1LCS
1
211
323911
A
1
1
211
35
245
1LCS
1
211
323911
B
1
1
211
6
3
2
6
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
22
A
LYS
22
A
GLY
30
A
GLY
30
A
TYR
8
A
TYR
8
A
ASN
16
A
ASN
16
A
ILE
194
A
ILE
194
A
MET
204
A
MET
204
A
LYS
180
A
LYS
180
A
LEU
186
A
LEU
186
A
PHE
78
A
PHE
78
A
PRO
82
A
PRO
82
A
THR
106
A
THR
106
A
GLU
108
A
GLU
108
A
MET
39
A
MET
39
A
ASP
42
A
ASP
42
A
PRO
162
A
PRO
162
A
PHE
167
A
PHE
167
A
ILE
120
A
ILE
120
A
LYS
124
A
LYS
124
A
TYR
131
A
TYR
131
A
GLN
132
A
GLN
132
A
TRP
138
A
TRP
138
A
CYS
139
A
CYS
139
B
LYS
22
B
LYS
22
B
GLY
30
B
GLY
30
B
TYR
8
B
TYR
8
B
ASN
16
B
ASN
16
B
ILE
194
B
ILE
194
B
MET
204
B
MET
204
B
LYS
180
B
LYS
180
B
LEU
186
B
LEU
186
B
PHE
78
B
PHE
78
B
PRO
82
B
PRO
82
B
THR
106
B
THR
106
B
GLU
108
B
GLU
108
B
MET
39
B
MET
39
B
ASP
42
B
ASP
42
B
PRO
162
B
PRO
162
B
PHE
167
B
PHE
167
B
ILE
120
B
ILE
120
B
LYS
124
B
LYS
124
B
TYR
131
B
TYR
131
B
GLN
132
B
GLN
132
B
TRP
138
B
TRP
138
B
CYS
139
B
CYS
139
179
P 65 2 2