0.010707 0.006181 -0.000000 0.000000 0.012363 -0.000000 0.000000 0.000000 0.004320 0.00000 0.00000 0.00000 Barnett, A.L. Wensel, D.L. Li, W. Fass, D. Cunningham, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 120.00 93.400 93.400 231.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose beta-D-mannose; D-mannose; mannose D-saccharide, beta linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-alpha-D-glucopyranose N-acetyl-alpha-D-glucosamine; 2-acetamido-2-deoxy-alpha-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE D-saccharide, alpha linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C7 H16 O4 164.200 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL non-polymer C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 R C N 75 S C N 76 S C N 77 S C N 78 R C N 79 N C N 80 N O N 81 N O N 82 N O N 83 N O N 84 N O N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 R C N 100 N C N 101 N O N 102 N C N 103 N S N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N N N 113 S C N 114 N C N 115 N O N 116 N C N 117 N C N 118 N C N 119 N O N 120 N N N 121 N O N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N N N 133 S C N 134 N C N 135 N O N 136 N C N 137 N C N 138 N C N 139 N O N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 N C N 153 N C N 154 N O N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 N C Y 166 N C Y 167 N N Y 168 N C Y 169 N C Y 170 N N N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 S C N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 S C N 209 N C N 210 N O N 211 N C N 212 N C N 213 N C N 214 N C N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N N N 230 S C N 231 N C N 232 N O N 233 N C N 234 N C N 235 N C N 236 N C N 237 N N N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 S C N 255 S C N 256 S C N 257 S C N 258 R C N 259 N C N 260 N O N 261 N O N 262 N O N 263 N O N 264 N O N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C N 283 N C N 284 N S N 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 R C N 299 R C N 300 R C N 301 S C N 302 R C N 303 N C N 304 N C N 305 N C N 306 N N N 307 N O N 308 N O N 309 N O N 310 N O N 311 N O N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 S C N 329 R C N 330 R C N 331 S C N 332 R C N 333 N C N 334 N C N 335 N C N 336 N O N 337 N O N 338 N O N 339 N O N 340 N O N 341 N N N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N N N 382 S C N 383 N C N 384 N O N 385 N C N 386 N C N 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C N 403 N O N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N N N 413 S C N 414 N C N 415 N O N 416 R C N 417 N O N 418 N C N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N O N 430 N C N 431 N C N 432 N O N 433 N C N 434 N C N 435 N O N 436 N C N 437 N C N 438 N O N 439 N C N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N N Y 465 N C Y 466 N C Y 467 N C Y 468 N C Y 469 N C N 470 N O N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N N N 484 S C N 485 N C N 486 N O N 487 N C Y 488 N C Y 489 N C Y 490 N C Y 491 N C Y 492 N C Y 493 N C N 494 N O N 495 N O N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N N N 508 S C N 509 N C N 510 N O N 511 N C N 512 N C N 513 N C N 514 N O N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing Y 164 N sing Y 165 N doub Y 166 N doub N 167 N sing Y 168 N sing N 169 N sing Y 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing Y 356 N doub Y 357 N sing Y 358 N sing N 359 N sing Y 360 N doub N 361 N sing Y 362 N doub N 363 N sing Y 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N doub N 447 N sing N 448 N sing N 449 N sing N 450 N sing Y 451 N doub Y 452 N sing Y 453 N sing N 454 N sing Y 455 N doub Y 456 N sing Y 457 N sing N 458 N sing Y 459 N sing Y 460 N doub N 461 N sing Y 462 N doub N 463 N sing Y 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N doub N 475 N sing N 476 N sing N 477 N sing N 478 N sing Y 479 N doub Y 480 N sing Y 481 N sing N 482 N sing Y 483 N doub N 484 N sing Y 485 N doub N 486 N sing Y 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N doub N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing US J.Virol. JOVIAM 0825 0022-538X 77 2717 2729 10.1128/JVI.77.4.2717-2729.2003 12552012 Structure and Mechanism of a Coreceptor for Infection by a pathogenic feline retrovirus 2003 10.2210/pdb1lcs/pdb pdb_00001lcs 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-06-04 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.934 1.0 ID14-1 ESRF 0.934 SYNCHROTRON ESRF BEAMLINE ID14-1 23410.158 FELINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN 2 man polymer 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 3 man branched 951.875 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 164.200 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL 1 syn non-polymer 18.015 water 178 nat water no no NPSPHQVYNVTWTITNLVTGTKANATSMLGTLTDAFPTMYFDLCDIIGNTWNPSDQEPFPGYGCDQPMRRWQQRNTPFYV CPGHANRKQCGGPQDGFCAVWGCETTGETYWRPTSSWDYITVKKGVTQGIYQCSGGGWCGPCYDKAVHSSTTGASEGGRC NPLILQFTQKGRQTSWDGPKSWGLRLYRSGYDPIALFSVSRQVMTITPPQA NPSPHQVYNVTWTITNLVTGTKANATSMLGTLTDAFPTMYFDLCDIIGNTWNPSDQEPFPGYGCDQPMRRWQQRNTPFYV CPGHANRKQCGGPQDGFCAVWGCETTGETYWRPTSSWDYITVKKGVTQGIYQCSGGGWCGPCYDKAVHSSTTGASEGGRC NPLILQFTQKGRQTSWDGPKSWGLRLYRSGYDPIALFSVSRQVMTITPPQA A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Gammaretrovirus Feline leukemia virus strain B/lambda-B1 fall armyworm Spodoptera sample ENV 103916 Feline leukemia virus 7108 Spodoptera frugiperda SF9 AND HI5 PLASMID PVL1393 1 3.11 60.46 VAPOR DIFFUSION, HANGING DROP 5.6 PEG4000, ammonium acetate, sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_special_symmetry struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Source and taxonomy Version format compliance Atomic model Atomic model Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2003-04-08 1 1 2008-04-28 1 2 2011-07-13 1 3 2011-11-16 2 0 2020-07-29 2 1 2023-08-16 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_special_symmetry.label_asym_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession C NAG 401 n C NAG 1 C NAG 402 n C NAG 2 D NAG 501 n D NAG 1 D NAG 502 n D NAG 2 E NAG 601 n E NAG 1 E NAG 602 n E NAG 2 F NAG 701 n F NAG 1 F NAG 702 n F NAG 2 F MAN 703 n F MAN 3 F MAN 704 n F BMA 4 F NAG 705 n F NDG 5 DManpb b-D-mannopyranose b-D-Manp Man DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc DGlcpNAca N-acetyl-a-D-glucopyranosamine a-D-GlcpNAc GlcNAc Receptor-Binding Domain of Friend Murine Leukemia Virus RCSB Y RCSB 2002-04-06 REL REL oligosaccharide oligosaccharide DGlcpNAcb1-4DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}} 2 PDB-CARE LINUCS DGlcpNAca1-2DManpb1-6DManpa1-4DGlcpNAcb1-4DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/4,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5][a1122h-1b_1-5][a2122h-1a_1-5_2*NCC/3=O]/1-1-2-3-4/a4-b1_b4-c1_c6-d1_d2-e1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-Manp]{[(6+1)][b-D-Manp]{[(2+1)][a-D-GlcpNAc]{}}}}}} 3 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O4 NAG NAG 2 1 3 O1 HO4 sing C1 O4 MAN NAG 3 2 3 O1 HO4 sing C1 O6 BMA MAN 4 3 3 O1 HO6 sing C1 O2 NDG BMA 5 4 3 O1 HO2 sing n n n n n n n TOE 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL HOH water 1AOL PDB ENTRY 1AOL PDB experimental model 15P 119 4 TOE TOE 219 A TIP 6 5 HOH HOH 503 A TIP 7 5 HOH HOH 504 A TIP 8 5 HOH HOH 505 A TIP 9 5 HOH HOH 506 A TIP 10 5 HOH HOH 507 A TIP 11 5 HOH HOH 508 A TIP 12 5 HOH HOH 509 A TIP 13 5 HOH HOH 510 A TIP 14 5 HOH HOH 511 A TIP 15 5 HOH HOH 512 A TIP 16 5 HOH HOH 513 A TIP 17 5 HOH HOH 514 A TIP 18 5 HOH HOH 515 A TIP 19 5 HOH HOH 516 A TIP 20 5 HOH HOH 517 A TIP 21 5 HOH HOH 518 A TIP 22 5 HOH HOH 519 A TIP 23 5 HOH HOH 520 A TIP 24 5 HOH HOH 521 A TIP 25 5 HOH HOH 522 A TIP 26 5 HOH HOH 523 A TIP 27 5 HOH HOH 524 A TIP 28 5 HOH HOH 525 A TIP 29 5 HOH HOH 526 A TIP 30 5 HOH HOH 527 A TIP 31 5 HOH HOH 528 A TIP 32 5 HOH HOH 529 A TIP 33 5 HOH HOH 530 A TIP 34 5 HOH HOH 531 A TIP 35 5 HOH HOH 532 A TIP 36 5 HOH HOH 533 A TIP 37 5 HOH HOH 534 A TIP 38 5 HOH HOH 535 A TIP 39 5 HOH HOH 536 A TIP 40 5 HOH HOH 537 A TIP 41 5 HOH HOH 538 A TIP 42 5 HOH HOH 539 A TIP 43 5 HOH HOH 540 A TIP 44 5 HOH HOH 541 A TIP 45 5 HOH HOH 542 A TIP 46 5 HOH HOH 543 A TIP 47 5 HOH HOH 544 A TIP 48 5 HOH HOH 545 A TIP 49 5 HOH HOH 546 A TIP 50 5 HOH HOH 547 A TIP 51 5 HOH HOH 548 A TIP 52 5 HOH HOH 549 A TIP 59 5 HOH HOH 550 A TIP 60 5 HOH HOH 551 A TIP 61 5 HOH HOH 552 A TIP 62 5 HOH HOH 553 A TIP 63 5 HOH HOH 554 A TIP 64 5 HOH HOH 555 A TIP 65 5 HOH HOH 556 A TIP 66 5 HOH HOH 557 A TIP 67 5 HOH HOH 558 A TIP 68 5 HOH HOH 559 A TIP 69 5 HOH HOH 560 A TIP 70 5 HOH HOH 561 A TIP 71 5 HOH HOH 562 A TIP 72 5 HOH HOH 563 A TIP 73 5 HOH HOH 564 A TIP 74 5 HOH HOH 565 A TIP 75 5 HOH HOH 566 A TIP 76 5 HOH HOH 567 A TIP 77 5 HOH HOH 568 A TIP 78 5 HOH HOH 569 A TIP 79 5 HOH HOH 570 A TIP 80 5 HOH HOH 571 A TIP 81 5 HOH HOH 572 A TIP 82 5 HOH HOH 573 A TIP 83 5 HOH HOH 574 A TIP 104 5 HOH HOH 575 A TIP 105 5 HOH HOH 576 A TIP 106 5 HOH HOH 577 A TIP 107 5 HOH HOH 578 A TIP 108 5 HOH HOH 579 A TIP 109 5 HOH HOH 580 A TIP 110 5 HOH HOH 581 A TIP 111 5 HOH HOH 582 A TIP 112 5 HOH HOH 583 A TIP 113 5 HOH HOH 584 A TIP 114 5 HOH HOH 585 A TIP 115 5 HOH HOH 586 A TIP 116 5 HOH HOH 587 A TIP 117 5 HOH HOH 588 A TIP 118 5 HOH HOH 589 A TIP 119 5 HOH HOH 590 A TIP 120 5 HOH HOH 591 A TIP 121 5 HOH HOH 592 A TIP 122 5 HOH HOH 593 A TIP 142 5 HOH HOH 594 A TIP 143 5 HOH HOH 595 A TIP 144 5 HOH HOH 596 A TIP 145 5 HOH HOH 597 A TIP 146 5 HOH HOH 598 A TIP 147 5 HOH HOH 599 A TIP 148 5 HOH HOH 600 A TIP 149 5 HOH HOH 601 A TIP 162 5 HOH HOH 602 A TIP 165 5 HOH HOH 603 A TIP 166 5 HOH HOH 604 A TIP 167 5 HOH HOH 605 A TIP 168 5 HOH HOH 606 A TIP 169 5 HOH HOH 607 A TIP 170 5 HOH HOH 608 A TIP 1 5 HOH HOH 706 B TIP 2 5 HOH HOH 707 B TIP 3 5 HOH HOH 708 B TIP 4 5 HOH HOH 709 B TIP 5 5 HOH HOH 710 B TIP 53 5 HOH HOH 711 B TIP 54 5 HOH HOH 712 B TIP 55 5 HOH HOH 713 B TIP 56 5 HOH HOH 714 B TIP 57 5 HOH HOH 715 B TIP 58 5 HOH HOH 716 B TIP 84 5 HOH HOH 717 B TIP 85 5 HOH HOH 718 B TIP 86 5 HOH HOH 719 B TIP 87 5 HOH HOH 720 B TIP 88 5 HOH HOH 721 B TIP 89 5 HOH HOH 722 B TIP 90 5 HOH HOH 723 B TIP 91 5 HOH HOH 724 B TIP 92 5 HOH HOH 725 B TIP 93 5 HOH HOH 726 B TIP 94 5 HOH HOH 727 B TIP 95 5 HOH HOH 728 B TIP 96 5 HOH HOH 729 B TIP 97 5 HOH HOH 730 B TIP 98 5 HOH HOH 731 B TIP 99 5 HOH HOH 732 B TIP 100 5 HOH HOH 733 B TIP 101 5 HOH HOH 734 B TIP 102 5 HOH HOH 735 B TIP 103 5 HOH HOH 736 B TIP 123 5 HOH HOH 737 B TIP 124 5 HOH HOH 738 B TIP 125 5 HOH HOH 739 B TIP 126 5 HOH HOH 740 B TIP 127 5 HOH HOH 741 B TIP 128 5 HOH HOH 742 B TIP 129 5 HOH HOH 743 B TIP 130 5 HOH HOH 744 B TIP 131 5 HOH HOH 745 B TIP 132 5 HOH HOH 746 B TIP 133 5 HOH HOH 747 B TIP 134 5 HOH HOH 748 B TIP 135 5 HOH HOH 749 B TIP 136 5 HOH HOH 750 B TIP 137 5 HOH HOH 751 B TIP 138 5 HOH HOH 752 B TIP 139 5 HOH HOH 753 B TIP 140 5 HOH HOH 754 B TIP 141 5 HOH HOH 755 B TIP 150 5 HOH HOH 756 B TIP 151 5 HOH HOH 757 B TIP 152 5 HOH HOH 758 B TIP 153 5 HOH HOH 759 B TIP 154 5 HOH HOH 760 B TIP 155 5 HOH HOH 761 B TIP 156 5 HOH HOH 762 B TIP 157 5 HOH HOH 763 B TIP 158 5 HOH HOH 764 B TIP 159 5 HOH HOH 765 B TIP 160 5 HOH HOH 766 B TIP 161 5 HOH HOH 767 B TIP 163 5 HOH HOH 768 B TIP 164 5 HOH HOH 769 B TIP 171 5 HOH HOH 770 B TIP 172 5 HOH HOH 771 B TIP 173 5 HOH HOH 772 B TIP 174 5 HOH HOH 773 B TIP 175 5 HOH HOH 774 B TIP 176 5 HOH HOH 775 B TIP 177 5 HOH HOH 776 B TIP 178 5 HOH HOH 777 B n 1 1 A n 2 2 A n 3 3 A PRO 4 n 4 PRO 4 A HIS 5 n 5 HIS 5 A GLN 6 n 6 GLN 6 A VAL 7 n 7 VAL 7 A TYR 8 n 8 TYR 8 A ASN 9 n 9 ASN 9 A VAL 10 n 10 VAL 10 A THR 11 n 11 THR 11 A TRP 12 n 12 TRP 12 A THR 13 n 13 THR 13 A ILE 14 n 14 ILE 14 A THR 15 n 15 THR 15 A ASN 16 n 16 ASN 16 A LEU 17 n 17 LEU 17 A VAL 18 n 18 VAL 18 A THR 19 n 19 THR 19 A GLY 20 n 20 GLY 20 A THR 21 n 21 THR 21 A LYS 22 n 22 LYS 22 A ALA 23 n 23 ALA 23 A ASN 24 n 24 ASN 24 A ALA 25 n 25 ALA 25 A THR 26 n 26 THR 26 A SER 27 n 27 SER 27 A MET 28 n 28 MET 28 A LEU 29 n 29 LEU 29 A GLY 30 n 30 GLY 30 A THR 31 n 31 THR 31 A LEU 32 n 32 LEU 32 A THR 33 n 33 THR 33 A ASP 34 n 34 ASP 34 A ALA 35 n 35 ALA 35 A PHE 36 n 36 PHE 36 A PRO 37 n 37 PRO 37 A THR 38 n 38 THR 38 A MET 39 n 39 MET 39 A TYR 40 n 40 TYR 40 A PHE 41 n 41 PHE 41 A ASP 42 n 42 ASP 42 A LEU 43 n 43 LEU 43 A CYS 44 n 44 CYS 44 A ASP 45 n 45 ASP 45 A ILE 46 n 46 ILE 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A ASN 49 n 49 ASN 49 A THR 50 n 50 THR 50 A TRP 51 n 51 TRP 51 A ASN 52 n 52 ASN 52 A PRO 53 n 53 PRO 53 A SER 54 n 54 SER 54 A ASP 55 n 55 ASP 55 A GLN 56 n 56 GLN 56 A GLU 57 n 57 GLU 57 A PRO 58 n 58 PRO 58 A PHE 59 n 59 PHE 59 A PRO 60 n 60 PRO 60 A GLY 61 n 61 GLY 61 A TYR 62 n 62 TYR 62 A GLY 63 n 63 GLY 63 A CYS 64 n 64 CYS 64 A ASP 65 n 65 ASP 65 A GLN 66 n 66 GLN 66 A PRO 67 n 67 PRO 67 A MET 68 n 68 MET 68 A ARG 69 n 69 ARG 69 A ARG 70 n 70 ARG 70 A TRP 71 n 71 TRP 71 A GLN 72 n 72 GLN 72 A GLN 73 n 73 GLN 73 A ARG 74 n 74 ARG 74 A ASN 75 n 75 ASN 75 A THR 76 n 76 THR 76 A PRO 77 n 77 PRO 77 A PHE 78 n 78 PHE 78 A TYR 79 n 79 TYR 79 A VAL 80 n 80 VAL 80 A CYS 81 n 81 CYS 81 A PRO 82 n 82 PRO 82 A GLY 83 n 83 GLY 83 A HIS 84 n 84 HIS 84 A ALA 85 n 85 ALA 85 A ASN 86 n 86 ASN 86 A ARG 87 n 87 ARG 87 A LYS 88 n 88 LYS 88 A GLN 89 n 89 GLN 89 A CYS 90 n 90 CYS 90 A GLY 91 n 91 GLY 91 A GLY 92 n 92 GLY 92 A PRO 93 n 93 PRO 93 A GLN 94 n 94 GLN 94 A ASP 95 n 95 ASP 95 A GLY 96 n 96 GLY 96 A PHE 97 n 97 PHE 97 A CYS 98 n 98 CYS 98 A ALA 99 n 99 ALA 99 A VAL 100 n 100 VAL 100 A TRP 101 n 101 TRP 101 A GLY 102 n 102 GLY 102 A CYS 103 n 103 CYS 103 A GLU 104 n 104 GLU 104 A THR 105 n 105 THR 105 A THR 106 n 106 THR 106 A GLY 107 n 107 GLY 107 A GLU 108 n 108 GLU 108 A THR 109 n 109 THR 109 A TYR 110 n 110 TYR 110 A TRP 111 n 111 TRP 111 A ARG 112 n 112 ARG 112 A PRO 113 n 113 PRO 113 A THR 114 n 114 THR 114 A SER 115 n 115 SER 115 A SER 116 n 116 SER 116 A TRP 117 n 117 TRP 117 A ASP 118 n 118 ASP 118 A TYR 119 n 119 TYR 119 A ILE 120 n 120 ILE 120 A THR 121 n 121 THR 121 A VAL 122 n 122 VAL 122 A LYS 123 n 123 LYS 123 A LYS 124 n 124 LYS 124 A GLY 125 n 125 GLY 125 A VAL 126 n 126 VAL 126 A THR 127 n 127 THR 127 A GLN 128 n 128 GLN 128 A GLY 129 n 129 GLY 129 A ILE 130 n 130 ILE 130 A TYR 131 n 131 TYR 131 A GLN 132 n 132 GLN 132 A CYS 133 n 133 CYS 133 A SER 134 n 134 SER 134 A GLY 135 n 135 GLY 135 A GLY 136 n 136 GLY 136 A GLY 137 n 137 GLY 137 A TRP 138 n 138 TRP 138 A CYS 139 n 139 CYS 139 A GLY 140 n 140 GLY 140 A PRO 141 n 141 PRO 141 A CYS 142 n 142 CYS 142 A TYR 143 n 143 TYR 143 A ASP 144 n 144 ASP 144 A LYS 145 n 145 LYS 145 A ALA 146 n 146 ALA 146 A VAL 147 n 147 VAL 147 A HIS 148 n 148 HIS 148 A SER 149 n 149 SER 149 A SER 150 n 150 SER 150 A THR 151 n 151 THR 151 A THR 152 n 152 THR 152 A GLY 153 n 153 GLY 153 A ALA 154 n 154 ALA 154 A SER 155 n 155 SER 155 A GLU 156 n 156 GLU 156 A GLY 157 n 157 GLY 157 A GLY 158 n 158 GLY 158 A ARG 159 n 159 ARG 159 A CYS 160 n 160 CYS 160 A ASN 161 n 161 ASN 161 A PRO 162 n 162 PRO 162 A LEU 163 n 163 LEU 163 A ILE 164 n 164 ILE 164 A LEU 165 n 165 LEU 165 A GLN 166 n 166 GLN 166 A PHE 167 n 167 PHE 167 A THR 168 n 168 THR 168 A GLN 169 n 169 GLN 169 A LYS 170 n 170 LYS 170 A GLY 171 n 171 GLY 171 A ARG 172 n 172 ARG 172 A GLN 173 n 173 GLN 173 A THR 174 n 174 THR 174 A SER 175 n 175 SER 175 A TRP 176 n 176 TRP 176 A ASP 177 n 177 ASP 177 A GLY 178 n 178 GLY 178 A PRO 179 n 179 PRO 179 A LYS 180 n 180 LYS 180 A SER 181 n 181 SER 181 A TRP 182 n 182 TRP 182 A GLY 183 n 183 GLY 183 A LEU 184 n 184 LEU 184 A ARG 185 n 185 ARG 185 A LEU 186 n 186 LEU 186 A TYR 187 n 187 TYR 187 A ARG 188 n 188 ARG 188 A SER 189 n 189 SER 189 A GLY 190 n 190 GLY 190 A TYR 191 n 191 TYR 191 A ASP 192 n 192 ASP 192 A PRO 193 n 193 PRO 193 A ILE 194 n 194 ILE 194 A ALA 195 n 195 ALA 195 A LEU 196 n 196 LEU 196 A PHE 197 n 197 PHE 197 A SER 198 n 198 SER 198 A VAL 199 n 199 VAL 199 A SER 200 n 200 SER 200 A ARG 201 n 201 ARG 201 A GLN 202 n 202 GLN 202 A VAL 203 n 203 VAL 203 A MET 204 n 204 MET 204 A THR 205 n 205 THR 205 A ILE 206 n 206 ILE 206 A THR 207 n 207 THR 207 A PRO 208 n 208 PRO 208 A n 209 209 A n 210 210 A n 211 211 A n 1 1 B n 2 2 B n 3 3 B PRO 4 n 4 PRO 4 B HIS 5 n 5 HIS 5 B GLN 6 n 6 GLN 6 B VAL 7 n 7 VAL 7 B TYR 8 n 8 TYR 8 B ASN 9 n 9 ASN 9 B VAL 10 n 10 VAL 10 B THR 11 n 11 THR 11 B TRP 12 n 12 TRP 12 B THR 13 n 13 THR 13 B ILE 14 n 14 ILE 14 B THR 15 n 15 THR 15 B ASN 16 n 16 ASN 16 B LEU 17 n 17 LEU 17 B VAL 18 n 18 VAL 18 B THR 19 n 19 THR 19 B GLY 20 n 20 GLY 20 B THR 21 n 21 THR 21 B LYS 22 n 22 LYS 22 B ALA 23 n 23 ALA 23 B ASN 24 n 24 ASN 24 B ALA 25 n 25 ALA 25 B THR 26 n 26 THR 26 B SER 27 n 27 SER 27 B MET 28 n 28 MET 28 B LEU 29 n 29 LEU 29 B GLY 30 n 30 GLY 30 B THR 31 n 31 THR 31 B LEU 32 n 32 LEU 32 B THR 33 n 33 THR 33 B ASP 34 n 34 ASP 34 B ALA 35 n 35 ALA 35 B PHE 36 n 36 PHE 36 B PRO 37 n 37 PRO 37 B THR 38 n 38 THR 38 B MET 39 n 39 MET 39 B TYR 40 n 40 TYR 40 B PHE 41 n 41 PHE 41 B ASP 42 n 42 ASP 42 B LEU 43 n 43 LEU 43 B CYS 44 n 44 CYS 44 B ASP 45 n 45 ASP 45 B ILE 46 n 46 ILE 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B ASN 49 n 49 ASN 49 B THR 50 n 50 THR 50 B TRP 51 n 51 TRP 51 B ASN 52 n 52 ASN 52 B PRO 53 n 53 PRO 53 B SER 54 n 54 SER 54 B ASP 55 n 55 ASP 55 B GLN 56 n 56 GLN 56 B GLU 57 n 57 GLU 57 B PRO 58 n 58 PRO 58 B PHE 59 n 59 PHE 59 B PRO 60 n 60 PRO 60 B GLY 61 n 61 GLY 61 B TYR 62 n 62 TYR 62 B GLY 63 n 63 GLY 63 B CYS 64 n 64 CYS 64 B ASP 65 n 65 ASP 65 B GLN 66 n 66 GLN 66 B PRO 67 n 67 PRO 67 B MET 68 n 68 MET 68 B ARG 69 n 69 ARG 69 B ARG 70 n 70 ARG 70 B TRP 71 n 71 TRP 71 B GLN 72 n 72 GLN 72 B GLN 73 n 73 GLN 73 B ARG 74 n 74 ARG 74 B ASN 75 n 75 ASN 75 B THR 76 n 76 THR 76 B PRO 77 n 77 PRO 77 B PHE 78 n 78 PHE 78 B TYR 79 n 79 TYR 79 B VAL 80 n 80 VAL 80 B CYS 81 n 81 CYS 81 B PRO 82 n 82 PRO 82 B GLY 83 n 83 GLY 83 B HIS 84 n 84 HIS 84 B ALA 85 n 85 ALA 85 B ASN 86 n 86 ASN 86 B ARG 87 n 87 ARG 87 B LYS 88 n 88 LYS 88 B GLN 89 n 89 GLN 89 B CYS 90 n 90 CYS 90 B GLY 91 n 91 GLY 91 B GLY 92 n 92 GLY 92 B PRO 93 n 93 PRO 93 B GLN 94 n 94 GLN 94 B ASP 95 n 95 ASP 95 B GLY 96 n 96 GLY 96 B PHE 97 n 97 PHE 97 B CYS 98 n 98 CYS 98 B ALA 99 n 99 ALA 99 B VAL 100 n 100 VAL 100 B TRP 101 n 101 TRP 101 B GLY 102 n 102 GLY 102 B CYS 103 n 103 CYS 103 B GLU 104 n 104 GLU 104 B THR 105 n 105 THR 105 B THR 106 n 106 THR 106 B GLY 107 n 107 GLY 107 B GLU 108 n 108 GLU 108 B THR 109 n 109 THR 109 B TYR 110 n 110 TYR 110 B TRP 111 n 111 TRP 111 B ARG 112 n 112 ARG 112 B PRO 113 n 113 PRO 113 B THR 114 n 114 THR 114 B SER 115 n 115 SER 115 B SER 116 n 116 SER 116 B TRP 117 n 117 TRP 117 B ASP 118 n 118 ASP 118 B TYR 119 n 119 TYR 119 B ILE 120 n 120 ILE 120 B THR 121 n 121 THR 121 B VAL 122 n 122 VAL 122 B LYS 123 n 123 LYS 123 B LYS 124 n 124 LYS 124 B GLY 125 n 125 GLY 125 B VAL 126 n 126 VAL 126 B THR 127 n 127 THR 127 B GLN 128 n 128 GLN 128 B GLY 129 n 129 GLY 129 B ILE 130 n 130 ILE 130 B TYR 131 n 131 TYR 131 B GLN 132 n 132 GLN 132 B CYS 133 n 133 CYS 133 B SER 134 n 134 SER 134 B GLY 135 n 135 GLY 135 B GLY 136 n 136 GLY 136 B GLY 137 n 137 GLY 137 B TRP 138 n 138 TRP 138 B CYS 139 n 139 CYS 139 B GLY 140 n 140 GLY 140 B PRO 141 n 141 PRO 141 B CYS 142 n 142 CYS 142 B TYR 143 n 143 TYR 143 B ASP 144 n 144 ASP 144 B LYS 145 n 145 LYS 145 B ALA 146 n 146 ALA 146 B VAL 147 n 147 VAL 147 B HIS 148 n 148 HIS 148 B SER 149 n 149 SER 149 B SER 150 n 150 SER 150 B THR 151 n 151 THR 151 B THR 152 n 152 THR 152 B GLY 153 n 153 GLY 153 B ALA 154 n 154 ALA 154 B SER 155 n 155 SER 155 B GLU 156 n 156 GLU 156 B GLY 157 n 157 GLY 157 B GLY 158 n 158 GLY 158 B ARG 159 n 159 ARG 159 B CYS 160 n 160 CYS 160 B ASN 161 n 161 ASN 161 B PRO 162 n 162 PRO 162 B LEU 163 n 163 LEU 163 B ILE 164 n 164 ILE 164 B LEU 165 n 165 LEU 165 B GLN 166 n 166 GLN 166 B PHE 167 n 167 PHE 167 B THR 168 n 168 THR 168 B GLN 169 n 169 GLN 169 B LYS 170 n 170 LYS 170 B GLY 171 n 171 GLY 171 B ARG 172 n 172 ARG 172 B GLN 173 n 173 GLN 173 B THR 174 n 174 THR 174 B SER 175 n 175 SER 175 B TRP 176 n 176 TRP 176 B ASP 177 n 177 ASP 177 B GLY 178 n 178 GLY 178 B PRO 179 n 179 PRO 179 B LYS 180 n 180 LYS 180 B SER 181 n 181 SER 181 B TRP 182 n 182 TRP 182 B GLY 183 n 183 GLY 183 B LEU 184 n 184 LEU 184 B ARG 185 n 185 ARG 185 B LEU 186 n 186 LEU 186 B TYR 187 n 187 TYR 187 B ARG 188 n 188 ARG 188 B SER 189 n 189 SER 189 B GLY 190 n 190 GLY 190 B TYR 191 n 191 TYR 191 B ASP 192 n 192 ASP 192 B PRO 193 n 193 PRO 193 B ILE 194 n 194 ILE 194 B ALA 195 n 195 ALA 195 B LEU 196 n 196 LEU 196 B PHE 197 n 197 PHE 197 B SER 198 n 198 SER 198 B VAL 199 n 199 VAL 199 B SER 200 n 200 SER 200 B ARG 201 n 201 ARG 201 B GLN 202 n 202 GLN 202 B VAL 203 n 203 VAL 203 B MET 204 n 204 MET 204 B THR 205 n 205 THR 205 B ILE 206 n 206 ILE 206 B THR 207 n 207 THR 207 B PRO 208 n 208 PRO 208 B n 209 209 B n 210 210 B n 211 211 B author_defined_assembly 1 monomeric author_and_software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 4 tetrameric software_defined_assembly PISA 2 dimeric 12690 32 39700 5940 22 20260 A ASN 9 GLYCOSYLATION SITE A ASN 9 ASN A ASN 24 GLYCOSYLATION SITE A ASN 24 ASN B ASN 9 GLYCOSYLATION SITE B ASN 9 ASN B ASN 24 GLYCOSYLATION SITE B ASN 24 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 10_666 -y+1,-x+1,-z+7/6 crystal symmetry operation 46.7000000000 80.8867727135 270.0833333333 0.5000000000 0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 5_555 y,-x+y,z+1/6 crystal symmetry operation 0.0000000000 0.0000000000 38.5833333333 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_666 x-y+1,-y+1,-z+1 crystal symmetry operation 46.7000000000 80.8867727135 231.5000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_565 x,x-y+1,-z+5/6 crystal symmetry operation -46.7000000000 80.8867727135 192.9166666667 A O THR 26 A O THR 26 A N TRP 12 A N TRP 12 A N THR 15 A N THR 15 A O SER 198 A O SER 198 A O ALA 195 A O ALA 195 A N LEU 184 A N LEU 184 A O GLY 183 A O GLY 183 A N CYS 81 A N CYS 81 A N VAL 80 A N VAL 80 A O THR 106 A O THR 106 A N PHE 41 A N PHE 41 A O LEU 163 A O LEU 163 A O ILE 164 A O ILE 164 A N LYS 123 A N LYS 123 A N TYR 131 A N TYR 131 A O CYS 139 A O CYS 139 B O ALA 23 B O ALA 23 B N ILE 14 B N ILE 14 B N THR 11 B N THR 11 B O GLN 202 B O GLN 202 B O PHE 197 B O PHE 197 B N TRP 182 B N TRP 182 B O GLY 183 B O GLY 183 B N CYS 81 B N CYS 81 B N PHE 78 B N PHE 78 B O GLU 108 B O GLU 108 B N MET 39 B N MET 39 B O LEU 165 B O LEU 165 B O ILE 164 B O ILE 164 B N LYS 123 B N LYS 123 B N TYR 131 B N TYR 131 B O CYS 139 B O CYS 139 1 A HOH 588 H HOH 1 A HOH 599 H HOH 1 A ASN 1 A ASN 1 1 Y 1 A PRO 2 A PRO 2 1 Y 1 A SER 3 A SER 3 1 Y 1 A PRO 209 A PRO 209 1 Y 1 A GLN 210 A GLN 210 1 Y 1 A ALA 211 A ALA 211 1 Y 1 B ASN 1 B ASN 1 1 Y 1 B PRO 2 B PRO 2 1 Y 1 B SER 3 B SER 3 1 Y 1 B PRO 209 B PRO 209 1 Y 1 B GLN 210 B GLN 210 1 Y 1 B ALA 211 B ALA 211 1 Y 1 8.01 1.10 114.20 122.21 A A A CA CB SG CYS CYS CYS 98 98 98 N 1 7.54 1.10 114.20 121.74 B B B CA CB SG CYS CYS CYS 98 98 98 N 1 A PHE 59 36.38 66.43 1 A SER 134 52.73 -97.10 1 A HIS 148 -166.78 84.13 1 A SER 150 82.85 -50.98 1 A THR 151 -54.12 104.40 1 A ALA 154 -39.82 122.54 1 A CYS 160 -153.61 34.20 1 A TRP 176 -116.02 62.87 1 B PHE 59 39.15 66.42 1 B ASN 75 -97.63 36.91 1 B ARG 112 43.69 71.97 1 B SER 134 -26.86 -53.50 1 B HIS 148 -173.86 90.23 1 B SER 149 -72.03 -162.16 1 B CYS 160 -151.93 26.98 0.264 0.216 2.5 20.0 1494 21072 21010 random 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1AOL Engh & Huber 2.5 20.0 178 3539 159 0 3202 0.007 1.32 2.5 20.0 1LCS 21072 21010 0.061 1 25.4 9 99.7 2.50 2.59 9.4 0.192 1 100 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS RECEPTOR-BINDING DOMAIN FROM SUBGROUP B FELINE LEUKEMIA VIRUS 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N 5 N N 5 N N A CYS 44 A CYS 44 HELX_P A ILE 46 A ILE 46 5 1 3 A GLN 66 A GLN 66 HELX_P A ASN 75 A ASN 75 1 2 10 A ARG 87 A ARG 87 HELX_P A GLY 91 A GLY 91 5 3 5 A GLY 92 A GLY 92 HELX_P A GLY 96 A GLY 96 5 4 5 A SER 155 A SER 155 HELX_P A ARG 159 A ARG 159 5 5 5 A THR 168 A THR 168 HELX_P A THR 174 A THR 174 1 6 7 B CYS 44 B CYS 44 HELX_P B ILE 46 B ILE 46 5 7 3 B GLN 66 B GLN 66 HELX_P B ASN 75 B ASN 75 1 8 10 B GLY 92 B GLY 92 HELX_P B GLY 96 B GLY 96 5 9 5 B SER 155 B SER 155 HELX_P B ARG 159 B ARG 159 5 10 5 B GLN 169 B GLN 169 HELX_P B GLN 173 B GLN 173 5 11 5 disulf 2.041 A CYS 44 A SG CYS 44 1_555 A CYS 64 A SG CYS 64 1_555 disulf 2.030 A CYS 81 A SG CYS 81 1_555 A CYS 98 A SG CYS 98 1_555 disulf 2.037 A CYS 90 A SG CYS 90 1_555 A CYS 103 A SG CYS 103 1_555 disulf 2.035 A CYS 133 A SG CYS 133 1_555 A CYS 139 A SG CYS 139 1_555 disulf 2.039 A CYS 142 A SG CYS 142 1_555 A CYS 160 A SG CYS 160 1_555 disulf 2.037 B CYS 44 B SG CYS 44 1_555 B CYS 64 B SG CYS 64 1_555 disulf 2.026 B CYS 81 B SG CYS 81 1_555 B CYS 98 B SG CYS 98 1_555 disulf 2.038 B CYS 90 B SG CYS 90 1_555 B CYS 103 B SG CYS 103 1_555 disulf 2.036 B CYS 133 B SG CYS 133 1_555 B CYS 139 B SG CYS 139 1_555 disulf 2.045 B CYS 142 B SG CYS 142 1_555 B CYS 160 B SG CYS 160 1_555 covale 1.450 one N-Glycosylation A ASN 9 A ND2 ASN 9 1_555 C NAG 1 C C1 NAG 1_555 covale 1.452 one N-Glycosylation A ASN 24 A ND2 ASN 24 1_555 D NAG 1 D C1 NAG 1_555 covale 1.452 one N-Glycosylation B ASN 9 B ND2 ASN 9 1_555 E NAG 1 E C1 NAG 1_555 covale 1.453 one N-Glycosylation B ASN 24 B ND2 ASN 24 1_555 F NAG 1 F C1 NAG 1_555 covale 1.389 both C NAG 1 C O4 NAG 1_555 C NAG 2 C C1 NAG 1_555 covale 1.396 both D NAG 1 D O4 NAG 1_555 D NAG 2 D C1 NAG 1_555 covale 1.396 both E NAG 1 E O4 NAG 1_555 E NAG 2 E C1 NAG 1_555 covale 1.393 both F NAG 1 F O4 NAG 1_555 F NAG 2 F C1 NAG 1_555 covale 1.393 both F NAG 2 F O4 NAG 1_555 F MAN 3 F C1 MAN 1_555 covale 1.407 both F MAN 3 F O6 MAN 1_555 F BMA 4 F C1 BMA 1_555 covale 1.404 both F BMA 4 F O2 BMA 1_555 F NDG 5 F C1 NDG 1_555 VIRAL PROTEIN antiparallel beta-sandwich glycoprotein, Viral protein A THR 207 A THR 207 1 A PRO 208 A PRO 208 -0.07 B THR 207 B THR 207 1 B PRO 208 B PRO 208 0.01 AAA43052 GB 1 35 323911 NPSPHQVYNVTWTITNLVTGTKANATSMLGTLTDAFPTMYFDLCDIIGNTWNPSDQEPFPGYGCDQPMRRWQQRNTPFYV CPGHANRKQCGGPQDGFCAVWGCETTGETYWRPTSSWDYITVKKGVTQGIYQCSGGGWCGPCYDKAVHSSTTGASEGGRC NPLILQFTQKGRQTSWDGPKSWGLRLYRSGYDPIALFSVSRQVMTITPPQA 35 245 1LCS 1 211 323911 A 1 1 211 35 245 1LCS 1 211 323911 B 1 1 211 6 3 2 6 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 22 A LYS 22 A GLY 30 A GLY 30 A TYR 8 A TYR 8 A ASN 16 A ASN 16 A ILE 194 A ILE 194 A MET 204 A MET 204 A LYS 180 A LYS 180 A LEU 186 A LEU 186 A PHE 78 A PHE 78 A PRO 82 A PRO 82 A THR 106 A THR 106 A GLU 108 A GLU 108 A MET 39 A MET 39 A ASP 42 A ASP 42 A PRO 162 A PRO 162 A PHE 167 A PHE 167 A ILE 120 A ILE 120 A LYS 124 A LYS 124 A TYR 131 A TYR 131 A GLN 132 A GLN 132 A TRP 138 A TRP 138 A CYS 139 A CYS 139 B LYS 22 B LYS 22 B GLY 30 B GLY 30 B TYR 8 B TYR 8 B ASN 16 B ASN 16 B ILE 194 B ILE 194 B MET 204 B MET 204 B LYS 180 B LYS 180 B LEU 186 B LEU 186 B PHE 78 B PHE 78 B PRO 82 B PRO 82 B THR 106 B THR 106 B GLU 108 B GLU 108 B MET 39 B MET 39 B ASP 42 B ASP 42 B PRO 162 B PRO 162 B PHE 167 B PHE 167 B ILE 120 B ILE 120 B LYS 124 B LYS 124 B TYR 131 B TYR 131 B GLN 132 B GLN 132 B TRP 138 B TRP 138 B CYS 139 B CYS 139 179 P 65 2 2