0.010335
0.000000
0.000000
0.000000
0.010335
0.000000
0.000000
0.000000
0.005425
0.00000
0.00000
0.00000
Nollert, P.
Miercke, L.J.W.
O'Connell, J.
Stroud, R.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
96.23
96.23
184.37
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C14 H28 O6
292.369
n
octyl beta-D-glucopyranoside
Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside
D-saccharide
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
N
O
N
76
R
C
N
77
N
O
N
78
S
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
R
C
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
R
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
S
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
N
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
R
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
N
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
doub
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
US
Science
SCIEAS
0038
0036-8075
296
525
530
10.1126/science.1067778
11964478
Control of the selectivity of the aquaporin water channel family by global orientational tuning.
2002
US
Science
SCIEAS
0038
0036-8075
290
481
486
10.1126/science.290.5491.481
Structure of a Glycerol-Conducting Channel and the Basis for Its Selectivity
2000
10.2210/pdb1lda/pdb
pdb_00001lda
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2000-10-07
ADSC QUANTUM
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
5.0.2
ALS
1.1
SYNCHROTRON
ALS BEAMLINE 5.0.2
29799.842
Glycerol uptake facilitator protein
1
man
polymer
292.369
octyl beta-D-glucopyranoside
2
man
non-polymer
18.015
water
62
nat
water
Aquaglyceroporin
no
no
MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFAC
FDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP
IVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL
MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFAC
FDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP
IVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
562
Escherichia coli
83333
Escherichia coli K12
K12
1
3.58
65.63
VAPOR DIFFUSION, HANGING DROP
9.50
GLPF AT 15-20 MG/ML, 28% (W/V) PEG 2000, 100 MM BICINE pH 9.5, 15 % (V/V) GLYCEROL, 35 MM, N-OCTYL-BETA-D-GLUCOSIDE, MGCL2, 5 MM DTT, pH 9.50, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
atom_site
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_struct_special_symmetry
pdbx_validate_symm_contact
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Derived calculations
Version format compliance
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2002-05-08
1
1
2008-04-28
1
2
2011-07-13
2
0
2020-07-29
2
1
2023-08-16
_atom_site.occupancy
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
b-octylglucoside
CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) MUTATION W48F, F200T
CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) WITHOUT SUBSTRATE GLYCEROL
HELIX
DETERMINATION METHOD: AUTHOR
RCSB
Y
RCSB
2002-04-08
REL
BOG
octyl beta-D-glucopyranoside
HOH
water
1FX8
PDB ENTRY 1FX8
PDB
experimental model
BOG
473
2
BOG
BOG
473
A
BOG
474
2
BOG
BOG
474
A
WAT
1
3
HOH
HOH
475
A
WAT
2
3
HOH
HOH
476
A
WAT
3
3
HOH
HOH
477
A
WAT
4
3
HOH
HOH
478
A
WAT
6
3
HOH
HOH
479
A
WAT
7
3
HOH
HOH
480
A
WAT
9
3
HOH
HOH
481
A
WAT
10
3
HOH
HOH
482
A
WAT
11
3
HOH
HOH
483
A
WAT
13
3
HOH
HOH
484
A
WAT
14
3
HOH
HOH
485
A
WAT
15
3
HOH
HOH
486
A
WAT
20
3
HOH
HOH
487
A
WAT
21
3
HOH
HOH
488
A
WAT
22
3
HOH
HOH
489
A
WAT
25
3
HOH
HOH
490
A
WAT
26
3
HOH
HOH
491
A
WAT
28
3
HOH
HOH
492
A
WAT
31
3
HOH
HOH
493
A
WAT
35
3
HOH
HOH
494
A
WAT
36
3
HOH
HOH
495
A
WAT
37
3
HOH
HOH
496
A
WAT
40
3
HOH
HOH
497
A
WAT
44
3
HOH
HOH
498
A
WAT
45
3
HOH
HOH
499
A
WAT
47
3
HOH
HOH
500
A
WAT
48
3
HOH
HOH
501
A
WAT
49
3
HOH
HOH
502
A
WAT
50
3
HOH
HOH
503
A
WAT
51
3
HOH
HOH
504
A
WAT
55
3
HOH
HOH
505
A
WAT
56
3
HOH
HOH
506
A
WAT
63
3
HOH
HOH
507
A
WAT
65
3
HOH
HOH
508
A
WAT
67
3
HOH
HOH
509
A
WAT
68
3
HOH
HOH
510
A
WAT
69
3
HOH
HOH
511
A
WAT
73
3
HOH
HOH
512
A
WAT
75
3
HOH
HOH
513
A
WAT
84
3
HOH
HOH
514
A
WAT
85
3
HOH
HOH
515
A
WAT
86
3
HOH
HOH
516
A
WAT
90
3
HOH
HOH
517
A
WAT
522
3
HOH
HOH
518
A
WAT
441
3
HOH
HOH
519
A
WAT
349
3
HOH
HOH
520
A
WAT
191
3
HOH
HOH
521
A
WAT
348
3
HOH
HOH
522
A
WAT
347
3
HOH
HOH
523
A
WAT
367
3
HOH
HOH
524
A
WAT
359
3
HOH
HOH
525
A
WAT
405
3
HOH
HOH
526
A
WAT
423
3
HOH
HOH
527
A
WAT
361
3
HOH
HOH
528
A
WAT
382
3
HOH
HOH
529
A
WAT
354
3
HOH
HOH
530
A
WAT
442
3
HOH
HOH
531
A
WAT
365
3
HOH
HOH
532
A
WAT
351
3
HOH
HOH
533
A
WAT
366
3
HOH
HOH
534
A
WAT
370
3
HOH
HOH
535
A
WAT
381
3
HOH
HOH
536
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
THR
6
n
6
THR
6
A
LEU
7
n
7
LEU
7
A
LYS
8
n
8
LYS
8
A
GLY
9
n
9
GLY
9
A
GLN
10
n
10
GLN
10
A
CYS
11
n
11
CYS
11
A
ILE
12
n
12
ILE
12
A
ALA
13
n
13
ALA
13
A
GLU
14
n
14
GLU
14
A
PHE
15
n
15
PHE
15
A
LEU
16
n
16
LEU
16
A
GLY
17
n
17
GLY
17
A
THR
18
n
18
THR
18
A
GLY
19
n
19
GLY
19
A
LEU
20
n
20
LEU
20
A
LEU
21
n
21
LEU
21
A
ILE
22
n
22
ILE
22
A
PHE
23
n
23
PHE
23
A
PHE
24
n
24
PHE
24
A
GLY
25
n
25
GLY
25
A
VAL
26
n
26
VAL
26
A
GLY
27
n
27
GLY
27
A
CYS
28
n
28
CYS
28
A
VAL
29
n
29
VAL
29
A
ALA
30
n
30
ALA
30
A
ALA
31
n
31
ALA
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
VAL
34
n
34
VAL
34
A
ALA
35
n
35
ALA
35
A
GLY
36
n
36
GLY
36
A
ALA
37
n
37
ALA
37
A
SER
38
n
38
SER
38
A
PHE
39
n
39
PHE
39
A
GLY
40
n
40
GLY
40
A
GLN
41
n
41
GLN
41
A
TRP
42
n
42
TRP
42
A
GLU
43
n
43
GLU
43
A
ILE
44
n
44
ILE
44
A
SER
45
n
45
SER
45
A
VAL
46
n
46
VAL
46
A
ILE
47
n
47
ILE
47
A
TRP
48
n
48
TRP
48
A
GLY
49
n
49
GLY
49
A
LEU
50
n
50
LEU
50
A
GLY
51
n
51
GLY
51
A
VAL
52
n
52
VAL
52
A
ALA
53
n
53
ALA
53
A
MET
54
n
54
MET
54
A
ALA
55
n
55
ALA
55
A
ILE
56
n
56
ILE
56
A
TYR
57
n
57
TYR
57
A
LEU
58
n
58
LEU
58
A
THR
59
n
59
THR
59
A
ALA
60
n
60
ALA
60
A
GLY
61
n
61
GLY
61
A
VAL
62
n
62
VAL
62
A
SER
63
n
63
SER
63
A
GLY
64
n
64
GLY
64
A
ALA
65
n
65
ALA
65
A
HIS
66
n
66
HIS
66
A
LEU
67
n
67
LEU
67
A
ASN
68
n
68
ASN
68
A
PRO
69
n
69
PRO
69
A
ALA
70
n
70
ALA
70
A
VAL
71
n
71
VAL
71
A
THR
72
n
72
THR
72
A
ILE
73
n
73
ILE
73
A
ALA
74
n
74
ALA
74
A
LEU
75
n
75
LEU
75
A
TRP
76
n
76
TRP
76
A
LEU
77
n
77
LEU
77
A
PHE
78
n
78
PHE
78
A
ALA
79
n
79
ALA
79
A
CYS
80
n
80
CYS
80
A
PHE
81
n
81
PHE
81
A
ASP
82
n
82
ASP
82
A
LYS
83
n
83
LYS
83
A
ARG
84
n
84
ARG
84
A
LYS
85
n
85
LYS
85
A
VAL
86
n
86
VAL
86
A
ILE
87
n
87
ILE
87
A
PRO
88
n
88
PRO
88
A
PHE
89
n
89
PHE
89
A
ILE
90
n
90
ILE
90
A
VAL
91
n
91
VAL
91
A
SER
92
n
92
SER
92
A
GLN
93
n
93
GLN
93
A
VAL
94
n
94
VAL
94
A
ALA
95
n
95
ALA
95
A
GLY
96
n
96
GLY
96
A
ALA
97
n
97
ALA
97
A
PHE
98
n
98
PHE
98
A
CYS
99
n
99
CYS
99
A
ALA
100
n
100
ALA
100
A
ALA
101
n
101
ALA
101
A
ALA
102
n
102
ALA
102
A
LEU
103
n
103
LEU
103
A
VAL
104
n
104
VAL
104
A
TYR
105
n
105
TYR
105
A
GLY
106
n
106
GLY
106
A
LEU
107
n
107
LEU
107
A
TYR
108
n
108
TYR
108
A
TYR
109
n
109
TYR
109
A
ASN
110
n
110
ASN
110
A
LEU
111
n
111
LEU
111
A
PHE
112
n
112
PHE
112
A
PHE
113
n
113
PHE
113
A
ASP
114
n
114
ASP
114
A
PHE
115
n
115
PHE
115
A
GLU
116
n
116
GLU
116
A
GLN
117
n
117
GLN
117
A
THR
118
n
118
THR
118
A
HIS
119
n
119
HIS
119
A
HIS
120
n
120
HIS
120
A
ILE
121
n
121
ILE
121
A
VAL
122
n
122
VAL
122
A
ARG
123
n
123
ARG
123
A
GLY
124
n
124
GLY
124
A
SER
125
n
125
SER
125
A
VAL
126
n
126
VAL
126
A
GLU
127
n
127
GLU
127
A
SER
128
n
128
SER
128
A
VAL
129
n
129
VAL
129
A
ASP
130
n
130
ASP
130
A
LEU
131
n
131
LEU
131
A
ALA
132
n
132
ALA
132
A
GLY
133
n
133
GLY
133
A
THR
134
n
134
THR
134
A
PHE
135
n
135
PHE
135
A
SER
136
n
136
SER
136
A
THR
137
n
137
THR
137
A
TYR
138
n
138
TYR
138
A
PRO
139
n
139
PRO
139
A
ASN
140
n
140
ASN
140
A
PRO
141
n
141
PRO
141
A
HIS
142
n
142
HIS
142
A
ILE
143
n
143
ILE
143
A
ASN
144
n
144
ASN
144
A
PHE
145
n
145
PHE
145
A
VAL
146
n
146
VAL
146
A
GLN
147
n
147
GLN
147
A
ALA
148
n
148
ALA
148
A
PHE
149
n
149
PHE
149
A
ALA
150
n
150
ALA
150
A
VAL
151
n
151
VAL
151
A
GLU
152
n
152
GLU
152
A
MET
153
n
153
MET
153
A
VAL
154
n
154
VAL
154
A
ILE
155
n
155
ILE
155
A
THR
156
n
156
THR
156
A
ALA
157
n
157
ALA
157
A
ILE
158
n
158
ILE
158
A
LEU
159
n
159
LEU
159
A
MET
160
n
160
MET
160
A
GLY
161
n
161
GLY
161
A
LEU
162
n
162
LEU
162
A
ILE
163
n
163
ILE
163
A
LEU
164
n
164
LEU
164
A
ALA
165
n
165
ALA
165
A
LEU
166
n
166
LEU
166
A
THR
167
n
167
THR
167
A
ASP
168
n
168
ASP
168
A
ASP
169
n
169
ASP
169
A
GLY
170
n
170
GLY
170
A
ASN
171
n
171
ASN
171
A
GLY
172
n
172
GLY
172
A
VAL
173
n
173
VAL
173
A
PRO
174
n
174
PRO
174
A
ARG
175
n
175
ARG
175
A
GLY
176
n
176
GLY
176
A
PRO
177
n
177
PRO
177
A
LEU
178
n
178
LEU
178
A
ALA
179
n
179
ALA
179
A
PRO
180
n
180
PRO
180
A
LEU
181
n
181
LEU
181
A
LEU
182
n
182
LEU
182
A
ILE
183
n
183
ILE
183
A
GLY
184
n
184
GLY
184
A
LEU
185
n
185
LEU
185
A
LEU
186
n
186
LEU
186
A
ILE
187
n
187
ILE
187
A
ALA
188
n
188
ALA
188
A
VAL
189
n
189
VAL
189
A
ILE
190
n
190
ILE
190
A
GLY
191
n
191
GLY
191
A
ALA
192
n
192
ALA
192
A
SER
193
n
193
SER
193
A
MET
194
n
194
MET
194
A
GLY
195
n
195
GLY
195
A
PRO
196
n
196
PRO
196
A
LEU
197
n
197
LEU
197
A
THR
198
n
198
THR
198
A
GLY
199
n
199
GLY
199
A
PHE
200
n
200
PHE
200
A
ALA
201
n
201
ALA
201
A
MET
202
n
202
MET
202
A
ASN
203
n
203
ASN
203
A
PRO
204
n
204
PRO
204
A
ALA
205
n
205
ALA
205
A
ARG
206
n
206
ARG
206
A
ASP
207
n
207
ASP
207
A
PHE
208
n
208
PHE
208
A
GLY
209
n
209
GLY
209
A
PRO
210
n
210
PRO
210
A
LYS
211
n
211
LYS
211
A
VAL
212
n
212
VAL
212
A
PHE
213
n
213
PHE
213
A
ALA
214
n
214
ALA
214
A
TRP
215
n
215
TRP
215
A
LEU
216
n
216
LEU
216
A
ALA
217
n
217
ALA
217
A
GLY
218
n
218
GLY
218
A
TRP
219
n
219
TRP
219
A
GLY
220
n
220
GLY
220
A
ASN
221
n
221
ASN
221
A
VAL
222
n
222
VAL
222
A
ALA
223
n
223
ALA
223
A
PHE
224
n
224
PHE
224
A
THR
225
n
225
THR
225
A
GLY
226
n
226
GLY
226
A
GLY
227
n
227
GLY
227
A
ARG
228
n
228
ARG
228
A
ASP
229
n
229
ASP
229
A
ILE
230
n
230
ILE
230
A
PRO
231
n
231
PRO
231
A
TYR
232
n
232
TYR
232
A
PHE
233
n
233
PHE
233
A
LEU
234
n
234
LEU
234
A
VAL
235
n
235
VAL
235
A
PRO
236
n
236
PRO
236
A
LEU
237
n
237
LEU
237
A
PHE
238
n
238
PHE
238
A
GLY
239
n
239
GLY
239
A
PRO
240
n
240
PRO
240
A
ILE
241
n
241
ILE
241
A
VAL
242
n
242
VAL
242
A
GLY
243
n
243
GLY
243
A
ALA
244
n
244
ALA
244
A
ILE
245
n
245
ILE
245
A
VAL
246
n
246
VAL
246
A
GLY
247
n
247
GLY
247
A
ALA
248
n
248
ALA
248
A
PHE
249
n
249
PHE
249
A
ALA
250
n
250
ALA
250
A
TYR
251
n
251
TYR
251
A
ARG
252
n
252
ARG
252
A
LYS
253
n
253
LYS
253
A
LEU
254
n
254
LEU
254
A
ILE
255
n
255
ILE
255
A
GLY
256
n
256
GLY
256
A
ALA
257
n
257
ARG
257
A
HIS
258
n
258
HIS
258
A
LEU
259
n
259
LEU
259
A
n
260
260
A
n
261
261
A
n
262
262
A
n
263
263
A
n
264
264
A
n
265
265
A
n
266
266
A
n
267
267
A
n
268
268
A
n
269
269
A
n
270
270
A
n
271
271
A
n
272
272
A
n
273
273
A
n
274
274
A
n
275
275
A
n
276
276
A
n
277
277
A
n
278
278
A
n
279
279
A
n
280
280
A
n
281
281
A
author_and_software_defined_assembly
PQS
4
tetrameric
software_defined_assembly
PISA
4
tetrameric
13020
-142
36000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
96.7585873246
96.7585873246
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_655
-y+1,x,z
crystal symmetry operation
96.7585873246
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_565
y,-x+1,z
crystal symmetry operation
0.0000000000
96.7585873246
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
13_556
-x+1/2,y+1/2,-z+3/2
crystal symmetry operation
48.3792936623
48.3792936623
276.4976958525
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
14_466
x-1/2,-y+3/2,-z+3/2
crystal symmetry operation
-48.3792936623
145.1378809869
276.4976958525
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
15_456
y-1/2,x+1/2,-z+3/2
crystal symmetry operation
-48.3792936623
48.3792936623
276.4976958525
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
16_566
-y+1/2,-x+3/2,-z+3/2
crystal symmetry operation
48.3792936623
145.1378809869
276.4976958525
1
A
HOH
505
D
HOH
1
A
HOH
523
D
HOH
1
A
CG
ARG
257
A
CG
ARG
257
1
Y
1
A
CD
ARG
257
A
CD
ARG
257
1
Y
1
A
NE
ARG
257
A
NE
ARG
257
1
Y
1
A
CZ
ARG
257
A
CZ
ARG
257
1
Y
1
A
NH1
ARG
257
A
NH1
ARG
257
1
Y
1
A
NH2
ARG
257
A
NH2
ARG
257
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
GLN
3
A
GLN
3
1
Y
1
A
THR
4
A
THR
4
1
Y
1
A
SER
5
A
SER
5
1
Y
1
A
PRO
260
A
PRO
260
1
Y
1
A
CYS
261
A
CYS
261
1
Y
1
A
ASP
262
A
ASP
262
1
Y
1
A
ILE
263
A
ILE
263
1
Y
1
A
CYS
264
A
CYS
264
1
Y
1
A
VAL
265
A
VAL
265
1
Y
1
A
VAL
266
A
VAL
266
1
Y
1
A
GLU
267
A
GLU
267
1
Y
1
A
GLU
268
A
GLU
268
1
Y
1
A
LYS
269
A
LYS
269
1
Y
1
A
GLU
270
A
GLU
270
1
Y
1
A
THR
271
A
THR
271
1
Y
1
A
THR
272
A
THR
272
1
Y
1
A
THR
273
A
THR
273
1
Y
1
A
PRO
274
A
PRO
274
1
Y
1
A
SER
275
A
SER
275
1
Y
1
A
GLU
276
A
GLU
276
1
Y
1
A
GLN
277
A
GLN
277
1
Y
1
A
LYS
278
A
LYS
278
1
Y
1
A
ALA
279
A
ALA
279
1
Y
1
A
SER
280
A
SER
280
1
Y
1
A
LEU
281
A
LEU
281
1
Y
1
A
A
O
O
HOH
HOH
475
475
0.55
1_555
3_655
1
A
A
O
O
HOH
HOH
496
496
0.55
1_555
3_655
1
A
A
O
O
HOH
HOH
522
522
0.55
1_555
3_655
1
A
VAL
62
-105.74
-76.06
1
A
ASN
68
-161.67
116.73
1
A
HIS
120
34.44
65.66
1
A
PHE
200
27.11
58.01
1
A
MET
202
38.48
30.20
1
A
ILE
255
-121.26
-56.10
0.2490000
0.2080000
2.80
30.00
929
8698
8698
78.6
RANDOM
1
0.000
FOURIER SYNTHESIS
PDB ENTRY 1FX8
ENGH & HUBER
2.80
30.00
62
1997
40
0
1895
0.009
1.11
2.800
30.000
1LDA
8698
8698
0.0
0.000
0.0900000
1
16.9000
5.918
78.6
0.2960000
2.80
1
72.41
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) WITHOUT SUBSTRATE GLYCEROL
1
N
N
2
N
N
2
N
N
3
N
N
The biological assembly is generated by the crystallographic four-fold axis:
X,Y,Z;
-X+1, -Y+1,Z;
-Y+1, X, Z;
Y, -X+1, Z
A
THR
6
A
THR
6
HELX_P
A
ALA
35
A
ALA
35
1
1
30
A
GLY
40
A
GLY
40
HELX_P
A
GLY
64
A
GLY
64
1
2
25
A
ASN
68
A
ASN
68
HELX_P
A
ALA
79
A
ALA
79
1
3
12
A
ASP
82
A
ASP
82
HELX_P
A
ARG
84
A
ARG
84
5
4
3
A
LYS
85
A
LYS
85
HELX_P
A
TYR
109
A
TYR
109
1
5
25
A
TYR
108
A
TYR
108
HELX_P
A
HIS
119
A
HIS
119
1
6
12
A
SER
125
A
SER
125
HELX_P
A
GLU
127
A
GLU
127
5
7
3
A
SER
128
A
SER
128
HELX_P
A
GLY
133
A
GLY
133
1
8
6
A
ASN
144
A
ASN
144
HELX_P
A
ASP
168
A
ASP
168
1
9
25
A
ARG
175
A
ARG
175
HELX_P
A
PRO
177
A
PRO
177
5
10
3
A
LEU
178
A
LEU
178
HELX_P
A
GLY
199
A
GLY
199
1
11
22
A
ASN
203
A
ASN
203
HELX_P
A
ALA
217
A
ALA
217
1
12
15
A
ASN
221
A
ASN
221
HELX_P
A
GLY
226
A
GLY
226
1
13
6
A
PHE
233
A
PHE
233
HELX_P
A
GLY
239
A
GLY
239
1
14
7
A
PRO
240
A
PRO
240
HELX_P
A
ILE
255
A
ILE
255
1
15
16
A
GLY
256
A
GLY
256
HELX_P
A
LEU
259
A
LEU
259
5
16
4
TRANSPORT PROTEIN
GLYCEROL-CONDUCTING MEMBRANE CHANNEL PROTEIN, TRANSPORT PROTEIN
GLPF_ECOLI
UNP
1
1
P11244
MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFAC
FDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP
IVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL
1
281
1LDA
1
281
P11244
A
1
1
281
97
I 4 2 2