0.010335
0.000000
0.000000
0.000000
0.010335
0.000000
0.000000
0.000000
0.005425
0.00000
0.00000
0.00000
Nollert, P.
Miercke, L.J.W.
O'Connell, J.
Stroud, R.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.0
90.0
90.00
96.053
96.053
184.195
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C14 H28 O6
292.369
n
octyl beta-D-glucopyranoside
Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside
D-saccharide
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
N
O
N
76
R
C
N
77
N
O
N
78
S
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
R
C
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
R
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
S
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
N
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
R
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
N
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
doub
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
US
Science
SCIEAS
0038
0036-8075
296
525
530
10.1126/science.1067778
11964478
Control of the selectivity of the aquaporin water channel family by global orientational tuning.
2002
US
Science
SCIEAS
0038
0036-8075
290
481
486
10.1126/science.290.5491.481
Structure of a Glycerol-Conducting Channel and the Basis for Its Selectivity
2000
10.2210/pdb1ldi/pdb
pdb_00001ldi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2000-06-07
ADSC QUANTUM
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
5.0.2
ALS
1.1
SYNCHROTRON
ALS BEAMLINE 5.0.2
29799.842
Glycerol uptake facilitator protein
1
man
polymer
292.369
octyl beta-D-glucopyranoside
2
man
non-polymer
18.015
water
62
nat
water
Aquaglyceroporin
no
no
MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFAC
FDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP
IVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL
MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFAC
FDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP
IVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
562
Escherichia coli
83333
Escherichia coli K12
K12
1
3.56
65.47
VAPOR DIFFUSION, HANGING DROP
9.50
GLPF at 15-20 mg/ml, 100 mM Bicine, 28% (w/v) PEG 2000, 300mM MgCl2, 5 mMDTT, 15 % (v/v) xylose, 35 mM N-octyl-beta-D-glucoside, pH 9.50, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Derived calculations
Version format compliance
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2002-05-08
1
1
2008-04-28
1
2
2011-07-13
1
3
2020-07-29
1
4
2023-08-16
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
b-octylglucoside
CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) WITHOUT SUBSTRATE GLYCEROL
CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) MUTATION W48F F200T
HELIX
DETERMINATION METHOD: AUTHOR
RCSB
Y
RCSB
2002-04-08
REL
BOG
octyl beta-D-glucopyranoside
HOH
water
1FX8
PDB ENTRY 1FX8
PDB
experimental model
BOG
473
2
BOG
BOG
473
A
BOG
474
2
BOG
BOG
474
A
HOH
1
3
HOH
HOH
475
A
HOH
2
3
HOH
HOH
476
A
HOH
3
3
HOH
HOH
477
A
HOH
4
3
HOH
HOH
478
A
HOH
6
3
HOH
HOH
479
A
HOH
7
3
HOH
HOH
480
A
HOH
9
3
HOH
HOH
481
A
HOH
10
3
HOH
HOH
482
A
HOH
11
3
HOH
HOH
483
A
HOH
13
3
HOH
HOH
484
A
HOH
14
3
HOH
HOH
485
A
HOH
15
3
HOH
HOH
486
A
HOH
20
3
HOH
HOH
487
A
HOH
21
3
HOH
HOH
488
A
HOH
22
3
HOH
HOH
489
A
HOH
25
3
HOH
HOH
490
A
HOH
26
3
HOH
HOH
491
A
HOH
28
3
HOH
HOH
492
A
HOH
31
3
HOH
HOH
493
A
HOH
35
3
HOH
HOH
494
A
HOH
36
3
HOH
HOH
495
A
HOH
37
3
HOH
HOH
496
A
HOH
40
3
HOH
HOH
497
A
HOH
44
3
HOH
HOH
498
A
HOH
45
3
HOH
HOH
499
A
HOH
47
3
HOH
HOH
500
A
HOH
48
3
HOH
HOH
501
A
HOH
49
3
HOH
HOH
502
A
HOH
50
3
HOH
HOH
503
A
HOH
51
3
HOH
HOH
504
A
HOH
55
3
HOH
HOH
505
A
HOH
56
3
HOH
HOH
506
A
HOH
63
3
HOH
HOH
507
A
HOH
65
3
HOH
HOH
508
A
HOH
67
3
HOH
HOH
509
A
HOH
68
3
HOH
HOH
510
A
HOH
69
3
HOH
HOH
511
A
HOH
73
3
HOH
HOH
512
A
HOH
75
3
HOH
HOH
513
A
HOH
84
3
HOH
HOH
514
A
HOH
85
3
HOH
HOH
515
A
HOH
86
3
HOH
HOH
516
A
HOH
90
3
HOH
HOH
517
A
HOH
522
3
HOH
HOH
518
A
HOH
441
3
HOH
HOH
519
A
HOH
349
3
HOH
HOH
520
A
HOH
191
3
HOH
HOH
521
A
HOH
348
3
HOH
HOH
522
A
HOH
347
3
HOH
HOH
523
A
HOH
367
3
HOH
HOH
524
A
HOH
359
3
HOH
HOH
525
A
HOH
405
3
HOH
HOH
526
A
HOH
423
3
HOH
HOH
527
A
HOH
361
3
HOH
HOH
528
A
HOH
382
3
HOH
HOH
529
A
HOH
354
3
HOH
HOH
530
A
HOH
442
3
HOH
HOH
531
A
HOH
365
3
HOH
HOH
532
A
HOH
351
3
HOH
HOH
533
A
HOH
366
3
HOH
HOH
534
A
HOH
370
3
HOH
HOH
535
A
HOH
381
3
HOH
HOH
536
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
THR
6
n
6
THR
6
A
LEU
7
n
7
LEU
7
A
LYS
8
n
8
LYS
8
A
GLY
9
n
9
GLY
9
A
GLN
10
n
10
GLN
10
A
CYS
11
n
11
CYS
11
A
ILE
12
n
12
ILE
12
A
ALA
13
n
13
ALA
13
A
GLU
14
n
14
GLU
14
A
PHE
15
n
15
PHE
15
A
LEU
16
n
16
LEU
16
A
GLY
17
n
17
GLY
17
A
THR
18
n
18
THR
18
A
GLY
19
n
19
GLY
19
A
LEU
20
n
20
LEU
20
A
LEU
21
n
21
LEU
21
A
ILE
22
n
22
ILE
22
A
PHE
23
n
23
PHE
23
A
PHE
24
n
24
PHE
24
A
GLY
25
n
25
GLY
25
A
VAL
26
n
26
VAL
26
A
GLY
27
n
27
GLY
27
A
CYS
28
n
28
CYS
28
A
VAL
29
n
29
VAL
29
A
ALA
30
n
30
ALA
30
A
ALA
31
n
31
ALA
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
VAL
34
n
34
VAL
34
A
ALA
35
n
35
ALA
35
A
GLY
36
n
36
GLY
36
A
ALA
37
n
37
ALA
37
A
SER
38
n
38
SER
38
A
PHE
39
n
39
PHE
39
A
GLY
40
n
40
GLY
40
A
GLN
41
n
41
GLN
41
A
TRP
42
n
42
TRP
42
A
GLU
43
n
43
GLU
43
A
ILE
44
n
44
ILE
44
A
SER
45
n
45
SER
45
A
VAL
46
n
46
VAL
46
A
ILE
47
n
47
ILE
47
A
TRP
48
n
48
TRP
48
A
GLY
49
n
49
GLY
49
A
LEU
50
n
50
LEU
50
A
GLY
51
n
51
GLY
51
A
VAL
52
n
52
VAL
52
A
ALA
53
n
53
ALA
53
A
MET
54
n
54
MET
54
A
ALA
55
n
55
ALA
55
A
ILE
56
n
56
ILE
56
A
TYR
57
n
57
TYR
57
A
LEU
58
n
58
LEU
58
A
THR
59
n
59
THR
59
A
ALA
60
n
60
ALA
60
A
GLY
61
n
61
GLY
61
A
VAL
62
n
62
VAL
62
A
SER
63
n
63
SER
63
A
GLY
64
n
64
GLY
64
A
ALA
65
n
65
ALA
65
A
HIS
66
n
66
HIS
66
A
LEU
67
n
67
LEU
67
A
ASN
68
n
68
ASN
68
A
PRO
69
n
69
PRO
69
A
ALA
70
n
70
ALA
70
A
VAL
71
n
71
VAL
71
A
THR
72
n
72
THR
72
A
ILE
73
n
73
ILE
73
A
ALA
74
n
74
ALA
74
A
LEU
75
n
75
LEU
75
A
TRP
76
n
76
TRP
76
A
LEU
77
n
77
LEU
77
A
PHE
78
n
78
PHE
78
A
ALA
79
n
79
ALA
79
A
CYS
80
n
80
CYS
80
A
PHE
81
n
81
PHE
81
A
ASP
82
n
82
ASP
82
A
LYS
83
n
83
LYS
83
A
ARG
84
n
84
ARG
84
A
LYS
85
n
85
LYS
85
A
VAL
86
n
86
VAL
86
A
ILE
87
n
87
ILE
87
A
PRO
88
n
88
PRO
88
A
PHE
89
n
89
PHE
89
A
ILE
90
n
90
ILE
90
A
VAL
91
n
91
VAL
91
A
SER
92
n
92
SER
92
A
GLN
93
n
93
GLN
93
A
VAL
94
n
94
VAL
94
A
ALA
95
n
95
ALA
95
A
GLY
96
n
96
GLY
96
A
ALA
97
n
97
ALA
97
A
PHE
98
n
98
PHE
98
A
CYS
99
n
99
CYS
99
A
ALA
100
n
100
ALA
100
A
ALA
101
n
101
ALA
101
A
ALA
102
n
102
ALA
102
A
LEU
103
n
103
LEU
103
A
VAL
104
n
104
VAL
104
A
TYR
105
n
105
TYR
105
A
GLY
106
n
106
GLY
106
A
LEU
107
n
107
LEU
107
A
TYR
108
n
108
TYR
108
A
TYR
109
n
109
TYR
109
A
ASN
110
n
110
ASN
110
A
LEU
111
n
111
LEU
111
A
PHE
112
n
112
PHE
112
A
PHE
113
n
113
PHE
113
A
ASP
114
n
114
ASP
114
A
PHE
115
n
115
PHE
115
A
GLU
116
n
116
GLU
116
A
GLN
117
n
117
GLN
117
A
THR
118
n
118
THR
118
A
HIS
119
n
119
HIS
119
A
HIS
120
n
120
HIS
120
A
ILE
121
n
121
ILE
121
A
VAL
122
n
122
VAL
122
A
ARG
123
n
123
ARG
123
A
GLY
124
n
124
GLY
124
A
SER
125
n
125
SER
125
A
VAL
126
n
126
VAL
126
A
GLU
127
n
127
GLU
127
A
SER
128
n
128
SER
128
A
VAL
129
n
129
VAL
129
A
ASP
130
n
130
ASP
130
A
LEU
131
n
131
LEU
131
A
ALA
132
n
132
ALA
132
A
GLY
133
n
133
GLY
133
A
THR
134
n
134
THR
134
A
PHE
135
n
135
PHE
135
A
SER
136
n
136
SER
136
A
THR
137
n
137
THR
137
A
TYR
138
n
138
TYR
138
A
PRO
139
n
139
PRO
139
A
ASN
140
n
140
ASN
140
A
PRO
141
n
141
PRO
141
A
HIS
142
n
142
HIS
142
A
ILE
143
n
143
ILE
143
A
ASN
144
n
144
ASN
144
A
PHE
145
n
145
PHE
145
A
VAL
146
n
146
VAL
146
A
GLN
147
n
147
GLN
147
A
ALA
148
n
148
ALA
148
A
PHE
149
n
149
PHE
149
A
ALA
150
n
150
ALA
150
A
VAL
151
n
151
VAL
151
A
GLU
152
n
152
GLU
152
A
MET
153
n
153
MET
153
A
VAL
154
n
154
VAL
154
A
ILE
155
n
155
ILE
155
A
THR
156
n
156
THR
156
A
ALA
157
n
157
ALA
157
A
ILE
158
n
158
ILE
158
A
LEU
159
n
159
LEU
159
A
MET
160
n
160
MET
160
A
GLY
161
n
161
GLY
161
A
LEU
162
n
162
LEU
162
A
ILE
163
n
163
ILE
163
A
LEU
164
n
164
LEU
164
A
ALA
165
n
165
ALA
165
A
LEU
166
n
166
LEU
166
A
THR
167
n
167
THR
167
A
ASP
168
n
168
ASP
168
A
ASP
169
n
169
ASP
169
A
GLY
170
n
170
GLY
170
A
ASN
171
n
171
ASN
171
A
GLY
172
n
172
GLY
172
A
VAL
173
n
173
VAL
173
A
PRO
174
n
174
PRO
174
A
ARG
175
n
175
ARG
175
A
GLY
176
n
176
GLY
176
A
PRO
177
n
177
PRO
177
A
LEU
178
n
178
LEU
178
A
ALA
179
n
179
ALA
179
A
PRO
180
n
180
PRO
180
A
LEU
181
n
181
LEU
181
A
LEU
182
n
182
LEU
182
A
ILE
183
n
183
ILE
183
A
GLY
184
n
184
GLY
184
A
LEU
185
n
185
LEU
185
A
LEU
186
n
186
LEU
186
A
ILE
187
n
187
ILE
187
A
ALA
188
n
188
ALA
188
A
VAL
189
n
189
VAL
189
A
ILE
190
n
190
ILE
190
A
GLY
191
n
191
GLY
191
A
ALA
192
n
192
ALA
192
A
SER
193
n
193
SER
193
A
MET
194
n
194
MET
194
A
GLY
195
n
195
GLY
195
A
PRO
196
n
196
PRO
196
A
LEU
197
n
197
LEU
197
A
THR
198
n
198
THR
198
A
GLY
199
n
199
GLY
199
A
PHE
200
n
200
PHE
200
A
ALA
201
n
201
ALA
201
A
MET
202
n
202
MET
202
A
ASN
203
n
203
ASN
203
A
PRO
204
n
204
PRO
204
A
ALA
205
n
205
ALA
205
A
ARG
206
n
206
ARG
206
A
ASP
207
n
207
ASP
207
A
PHE
208
n
208
PHE
208
A
GLY
209
n
209
GLY
209
A
PRO
210
n
210
PRO
210
A
LYS
211
n
211
LYS
211
A
VAL
212
n
212
VAL
212
A
PHE
213
n
213
PHE
213
A
ALA
214
n
214
ALA
214
A
TRP
215
n
215
TRP
215
A
LEU
216
n
216
LEU
216
A
ALA
217
n
217
ALA
217
A
GLY
218
n
218
GLY
218
A
TRP
219
n
219
TRP
219
A
GLY
220
n
220
GLY
220
A
ASN
221
n
221
ASN
221
A
VAL
222
n
222
VAL
222
A
ALA
223
n
223
ALA
223
A
PHE
224
n
224
PHE
224
A
THR
225
n
225
THR
225
A
GLY
226
n
226
GLY
226
A
GLY
227
n
227
GLY
227
A
ARG
228
n
228
ARG
228
A
ASP
229
n
229
ASP
229
A
ILE
230
n
230
ILE
230
A
PRO
231
n
231
PRO
231
A
TYR
232
n
232
TYR
232
A
PHE
233
n
233
PHE
233
A
LEU
234
n
234
LEU
234
A
VAL
235
n
235
VAL
235
A
PRO
236
n
236
PRO
236
A
LEU
237
n
237
LEU
237
A
PHE
238
n
238
PHE
238
A
GLY
239
n
239
GLY
239
A
PRO
240
n
240
PRO
240
A
ILE
241
n
241
ILE
241
A
VAL
242
n
242
VAL
242
A
GLY
243
n
243
GLY
243
A
ALA
244
n
244
ALA
244
A
ILE
245
n
245
ILE
245
A
VAL
246
n
246
VAL
246
A
GLY
247
n
247
GLY
247
A
ALA
248
n
248
ALA
248
A
PHE
249
n
249
PHE
249
A
ALA
250
n
250
ALA
250
A
TYR
251
n
251
TYR
251
A
ARG
252
n
252
ARG
252
A
LYS
253
n
253
LYS
253
A
LEU
254
n
254
LEU
254
A
ILE
255
n
255
ILE
255
A
GLY
256
n
256
GLY
256
A
ALA
257
n
257
ARG
257
A
HIS
258
n
258
HIS
258
A
LEU
259
n
259
LEU
259
A
n
260
260
A
n
261
261
A
n
262
262
A
n
263
263
A
n
264
264
A
n
265
265
A
n
266
266
A
n
267
267
A
n
268
268
A
n
269
269
A
n
270
270
A
n
271
271
A
n
272
272
A
n
273
273
A
n
274
274
A
n
275
275
A
n
276
276
A
n
277
277
A
n
278
278
A
n
279
279
A
n
280
280
A
n
281
281
A
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
14670
-139
34360
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
96.7585873246
96.7585873246
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_655
-y+1,x,z
crystal symmetry operation
96.7585873246
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_565
y,-x+1,z
crystal symmetry operation
0.0000000000
96.7585873246
0.0000000000
1
A
CG
ARG
257
A
CG
ARG
257
1
Y
1
A
CD
ARG
257
A
CD
ARG
257
1
Y
1
A
NE
ARG
257
A
NE
ARG
257
1
Y
1
A
CZ
ARG
257
A
CZ
ARG
257
1
Y
1
A
NH1
ARG
257
A
NH1
ARG
257
1
Y
1
A
NH2
ARG
257
A
NH2
ARG
257
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
GLN
3
A
GLN
3
1
Y
1
A
THR
4
A
THR
4
1
Y
1
A
SER
5
A
SER
5
1
Y
1
A
PRO
260
A
PRO
260
1
Y
1
A
CYS
261
A
CYS
261
1
Y
1
A
ASP
262
A
ASP
262
1
Y
1
A
ILE
263
A
ILE
263
1
Y
1
A
CYS
264
A
CYS
264
1
Y
1
A
VAL
265
A
VAL
265
1
Y
1
A
VAL
266
A
VAL
266
1
Y
1
A
GLU
267
A
GLU
267
1
Y
1
A
GLU
268
A
GLU
268
1
Y
1
A
LYS
269
A
LYS
269
1
Y
1
A
GLU
270
A
GLU
270
1
Y
1
A
THR
271
A
THR
271
1
Y
1
A
THR
272
A
THR
272
1
Y
1
A
THR
273
A
THR
273
1
Y
1
A
PRO
274
A
PRO
274
1
Y
1
A
SER
275
A
SER
275
1
Y
1
A
GLU
276
A
GLU
276
1
Y
1
A
GLN
277
A
GLN
277
1
Y
1
A
LYS
278
A
LYS
278
1
Y
1
A
ALA
279
A
ALA
279
1
Y
1
A
SER
280
A
SER
280
1
Y
1
A
LEU
281
A
LEU
281
1
Y
1
13.99
2.30
115.30
129.29
A
A
A
CA
CB
CG
LEU
LEU
LEU
21
21
21
N
1
A
A
O
O
HOH
HOH
523
523
0.54
1_555
15_456
1
A
A
O
O
HOH
HOH
505
505
0.54
1_555
15_456
1
A
A
O
O
HOH
HOH
475
475
0.70
1_555
3_655
1
A
A
O
O
HOH
HOH
496
496
0.70
1_555
3_655
1
A
A
O
O
HOH
HOH
522
522
0.70
1_555
3_655
1
A
VAL
62
-104.25
-71.77
1
A
ASN
68
-163.99
113.80
1
A
TYR
109
-29.86
-60.07
1
A
PHE
200
30.46
51.01
0.2610000
0.2290000
2.70
30.00
1144
10918
87.5
RANDOM
1
0.000
MOLECULAR REPLACEMENT
PDB ENTRY 1FX8
ENGH & HUBER
2.70
30.00
62
1997
40
0
1895
0.007
1.26
2.700
30.000
1LDI
10918
0.000
0.0810000
1
14.0000
5.949
87.5
0.3220000
2.70
1
83.20
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) WITHOUT SUBSTRATE GLYCEROL
1
N
N
2
N
N
2
N
N
3
N
N
The biological assembly is created by the crystallographic four-fold axis:
-X+1, -Y+1, Z; -Y+1,X,Z; Y,-X+1,Z
A
THR
6
A
THR
6
HELX_P
A
ALA
35
A
ALA
35
1
1
30
A
GLY
40
A
GLY
40
HELX_P
A
GLY
64
A
GLY
64
1
2
25
A
ASN
68
A
ASN
68
HELX_P
A
ALA
79
A
ALA
79
1
3
12
A
ASP
82
A
ASP
82
HELX_P
A
ARG
84
A
ARG
84
5
4
3
A
LYS
85
A
LYS
85
HELX_P
A
TYR
109
A
TYR
109
1
5
25
A
TYR
108
A
TYR
108
HELX_P
A
HIS
119
A
HIS
119
1
6
12
A
SER
125
A
SER
125
HELX_P
A
GLU
127
A
GLU
127
5
7
3
A
SER
128
A
SER
128
HELX_P
A
GLY
133
A
GLY
133
1
8
6
A
ASN
144
A
ASN
144
HELX_P
A
ASP
168
A
ASP
168
1
9
25
A
ARG
175
A
ARG
175
HELX_P
A
PRO
177
A
PRO
177
5
10
3
A
LEU
178
A
LEU
178
HELX_P
A
GLY
199
A
GLY
199
1
11
22
A
ASN
203
A
ASN
203
HELX_P
A
ALA
217
A
ALA
217
1
12
15
A
ASN
221
A
ASN
221
HELX_P
A
GLY
226
A
GLY
226
1
13
6
A
PHE
233
A
PHE
233
HELX_P
A
GLY
239
A
GLY
239
1
14
7
A
PRO
240
A
PRO
240
HELX_P
A
ILE
255
A
ILE
255
1
15
16
A
GLY
256
A
GLY
256
HELX_P
A
LEU
259
A
LEU
259
5
16
4
TRANSPORT PROTEIN
GLYCEROL-CONDUCTING MEMBRANE CHANNEL PROTEIN, TRANSPORT PROTEIN
GLPF_ECOLI
UNP
1
1
P11244
MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFAC
FDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP
IVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL
1
281
1LDI
1
281
P11244
A
1
1
281
97
I 4 2 2