0.013812
0.000000
0.001929
0.000000
0.020416
0.000000
0.000000
0.000000
0.012012
0.00000
0.00000
0.00000
Speir, J.A.
Wilson, I.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
97.95
90.00
72.400
48.980
84.060
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-alpha-D-glucopyranose
N-acetyl-alpha-D-glucosamine; 2-acetamido-2-deoxy-alpha-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
D-saccharide, alpha linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Immunity
IUNIEH
2048
1074-7613
8
553
562
10.1016/S1074-7613(00)80560-9
9620676
Structural basis of 2C TCR allorecognition of H-2Ld peptide complexes.
1998
US
Science
SCIEAS
0038
0036-8075
279
1166
Structural Basis of Plasticity in T Cell Receptor Recognition of a Self Peptide-Mhc Antigen
1998
10.2210/pdb1ldp/pdb
pdb_00001ldp
NAG A 1 HAS WRONG CHIRALITY AT ATOM C1
NAG H 273 HAS WRONG CHIRALITY AT ATOM C1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
DOUBLE-MIRROR FOCUSING CAMERAS
AREA DETECTOR
1996-01
SIEMENS
NI FILTER
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ELLIOTT GX-18
ASPARAGINE LINKED N-ACETYL-GLUCOSAMINE CARBOHYDRATES AT CHAIN H, N86 AND N176
31388.924
MHC CLASS I H-2LD
CHAIN H IS THE HEAVY CHAIN, PEPTIDE BINDING DOMAIN, CHAIN L IS THE LIGHT CHAIN OR BETA-2-MICROGLOBULIN
HEAVY CHAIN TRUNCATED AFTER RESIDUE 274, B2M, LIGHT CHAIN TRUNCATED AFTER RESIDUE 99
1
man
polymer
ASPARAGINE LINKED N-ACETYL-GLUCOSAMINE CARBOHYDRATES AT CHAIN H, N86 AND N176
11704.359
MHC CLASS I H-2LD
CHAIN H IS THE HEAVY CHAIN, PEPTIDE BINDING DOMAIN, CHAIN L IS THE LIGHT CHAIN OR BETA-2-MICROGLOBULIN
HEAVY CHAIN TRUNCATED AFTER RESIDUE 274, B2M, LIGHT CHAIN TRUNCATED AFTER RESIDUE 99
1
man
polymer
743.870
PEPTIDE
CHAIN P IS A PEPTIDE, CHAIN Q IS A MODEL OF PEPTIDE QL9 DERIVED FROM P
1
nat
polymer
1063.202
PEPTIDE
CHAIN P IS A PEPTIDE, CHAIN Q IS A MODEL OF PEPTIDE QL9 DERIVED FROM P
1
nat
polymer
424.401
2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
no
no
GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRT
LLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYL
EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT
FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL
GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRT
LLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYL
EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT
FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL
H
polypeptide(L)
no
no
IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC
RVKHDSMAEPKTVYWDRDM
IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC
RVKHDSMAEPKTVYWDRDM
L
polypeptide(L)
no
no
APAAAAAAM
APAAAAAAM
P
polypeptide(L)
no
no
QLSPFPFDL
QLSPFPFDL
Q
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
fruit fly
Drosophila
sample
MOST NUCLEATED CELLS
CYTOPLASM, ER, CELL SURFACE
H-2LD
10090
Mus musculus
SECRETED
7227
Drosophila melanogaster
house mouse
Mus
fruit fly
Drosophila
sample
MOST NUCLEATED CELLS
CYTOPLASM, ER, CELL SURFACE
H-2LD
10090
Mus musculus
SECRETED
7227
Drosophila melanogaster
fruit fly
CHAIN P PEPTIDE IS THE NATURAL PRODUCT OF THE EXPRESSION SYSTEM. IT IS ACTUALLY A MODEL REPRESENTING THE ELECTRON DENSITY OF A MIXTURE OF BOUND PEPTIDES AVAILABLE IN THE PROTEIN EXPRESSION MEDIA.
Drosophila
sample
7227
Drosophila melanogaster
fruit fly
CHAIN P PEPTIDE IS THE NATURAL PRODUCT OF THE EXPRESSION SYSTEM. IT IS ACTUALLY A MODEL REPRESENTING THE ELECTRON DENSITY OF A MIXTURE OF BOUND PEPTIDES AVAILABLE IN THE PROTEIN EXPRESSION MEDIA.
Drosophila
sample
7227
Drosophila melanogaster
3
3.18
61.
6.5
PROTEIN WAS CRYSTALLIZED FROM 100MM SODIUM CACODYLATE, 0.2M AMMONIUM SULFATE, 0.5M SODIUM BROMIDE, 30% PEG 8000, PH 6.5.
atom_site
chem_comp
database_PDB_caveat
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_validate_chiral
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Advisory
Atomic model
Data collection
Derived calculations
Non-polymer description
Structure summary
Database references
Refinement description
Structure summary
1
0
1998-06-17
1
1
2008-03-03
1
2
2011-07-13
2
0
2020-07-29
2
1
2023-08-09
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
H
NAG
100
n
A
NAG
1
H
NAG
101
n
A
NDG
2
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
DGlcpNAca
N-acetyl-a-D-glucopyranosamine
a-D-GlcpNAc
GlcNAc
Y
BNL
1998-03-15
REL
oligosaccharide
DGlcpNAca1-4DGlcpNAcb1-
5
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[a2122h-1b_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NCC/3=O]/1-2/a4-b1
5
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][a-D-GlcpNAc]{[(4+1)][a-D-GlcpNAc]{}}}
5
PDB-CARE
LINUCS
C1
O4
NDG
NAG
2
1
5
O1
HO4
sing
n
n
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
1HOC
PDB ENTRY 1HOC
PDB
experimental model
NAG
1
6
NAG
NAG
273
H
GLY
1
n
1
GLY
1
H
PRO
2
n
2
PRO
2
H
HIS
3
n
3
HIS
3
H
SER
4
n
4
SER
4
H
MET
5
n
5
MET
5
H
ARG
6
n
6
ARG
6
H
TYR
7
n
7
TYR
7
H
PHE
8
n
8
PHE
8
H
GLU
9
n
9
GLU
9
H
THR
10
n
10
THR
10
H
ALA
11
n
11
ALA
11
H
VAL
12
n
12
VAL
12
H
SER
13
n
13
SER
13
H
ARG
14
n
14
ARG
14
H
PRO
15
n
15
PRO
15
H
GLY
16
n
16
GLY
16
H
LEU
17
n
17
LEU
17
H
GLY
18
n
18
GLY
18
H
GLU
19
n
19
GLU
19
H
PRO
20
n
20
PRO
20
H
ARG
21
n
21
ARG
21
H
TYR
22
n
22
TYR
22
H
ILE
23
n
23
ILE
23
H
SER
24
n
24
SER
24
H
VAL
25
n
25
VAL
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
VAL
28
n
28
VAL
28
H
ASP
29
n
29
ASP
29
H
ASN
30
n
30
ASN
30
H
LYS
31
n
31
LYS
31
H
GLU
32
n
32
GLU
32
H
PHE
33
n
33
PHE
33
H
VAL
34
n
34
VAL
34
H
ARG
35
n
35
ARG
35
H
PHE
36
n
36
PHE
36
H
ASP
37
n
37
ASP
37
H
SER
38
n
38
SER
38
H
ASP
39
n
39
ASP
39
H
ALA
40
n
40
ALA
40
H
GLU
41
n
41
GLU
41
H
ASN
42
n
42
ASN
42
H
PRO
43
n
43
PRO
43
H
ARG
44
n
44
ARG
44
H
TYR
45
n
45
TYR
45
H
GLU
46
n
46
GLU
46
H
PRO
47
n
47
PRO
47
H
GLN
48
n
48
GLN
48
H
ALA
49
n
49
ALA
49
H
PRO
50
n
50
PRO
50
H
TRP
51
n
51
TRP
51
H
MET
52
n
52
MET
52
H
GLU
53
n
53
GLU
53
H
GLN
54
n
54
GLN
54
H
GLU
55
n
55
GLU
55
H
GLY
56
n
56
GLY
56
H
PRO
57
n
57
PRO
57
H
GLU
58
n
58
GLU
58
H
TYR
59
n
59
TYR
59
H
TRP
60
n
60
TRP
60
H
GLU
61
n
61
GLU
61
H
ARG
62
n
62
ARG
62
H
ILE
63
n
63
ILE
63
H
THR
64
n
64
THR
64
H
GLN
65
n
65
GLN
65
H
ILE
66
n
66
ILE
66
H
ALA
67
n
67
ALA
67
H
LYS
68
n
68
LYS
68
H
GLY
69
n
69
GLY
69
H
GLN
70
n
70
GLN
70
H
GLU
71
n
71
GLU
71
H
GLN
72
n
72
GLN
72
H
TRP
73
n
73
TRP
73
H
PHE
74
n
74
PHE
74
H
ARG
75
n
75
ARG
75
H
VAL
76
n
76
VAL
76
H
ASN
77
n
77
ASN
77
H
LEU
78
n
78
LEU
78
H
ARG
79
n
79
ARG
79
H
THR
80
n
80
THR
80
H
LEU
81
n
81
LEU
81
H
LEU
82
n
82
LEU
82
H
GLY
83
n
83
GLY
83
H
TYR
84
n
84
TYR
84
H
TYR
85
n
85
TYR
85
H
ASN
86
n
86
ASN
86
H
GLN
87
n
87
GLN
87
H
SER
88
n
88
SER
88
H
ALA
89
n
89
ALA
89
H
GLY
90
n
90
GLY
90
H
GLY
91
n
91
GLY
91
H
THR
92
n
92
THR
92
H
HIS
93
n
93
HIS
93
H
THR
94
n
94
THR
94
H
LEU
95
n
95
LEU
95
H
GLN
96
n
96
GLN
96
H
TRP
97
n
97
TRP
97
H
MET
98
n
98
MET
98
H
TYR
99
n
99
TYR
99
H
GLY
100
n
100
GLY
100
H
CYS
101
n
101
CYS
101
H
ASP
102
n
102
ASP
102
H
VAL
103
n
103
VAL
103
H
GLY
104
n
104
GLY
104
H
SER
105
n
105
SER
105
H
ASP
106
n
106
ASP
106
H
GLY
107
n
107
GLY
107
H
ARG
108
n
108
ARG
108
H
LEU
109
n
109
LEU
109
H
LEU
110
n
110
LEU
110
H
ARG
111
n
111
ARG
111
H
GLY
112
n
112
GLY
112
H
TYR
113
n
113
TYR
113
H
GLU
114
n
114
GLU
114
H
GLN
115
n
115
GLN
115
H
PHE
116
n
116
PHE
116
H
ALA
117
n
117
ALA
117
H
TYR
118
n
118
TYR
118
H
ASP
119
n
119
ASP
119
H
GLY
120
n
120
GLY
120
H
CYS
121
n
121
CYS
121
H
ASP
122
n
122
ASP
122
H
TYR
123
n
123
TYR
123
H
ILE
124
n
124
ILE
124
H
ALA
125
n
125
ALA
125
H
LEU
126
n
126
LEU
126
H
ASN
127
n
127
ASN
127
H
GLU
128
n
128
GLU
128
H
ASP
129
n
129
ASP
129
H
LEU
130
n
130
LEU
130
H
LYS
131
n
131
LYS
131
H
THR
132
n
132
THR
132
H
TRP
133
n
133
TRP
133
H
THR
134
n
134
THR
134
H
ALA
135
n
135
ALA
135
H
ALA
136
n
136
ALA
136
H
ASP
137
n
137
ASP
137
H
MET
138
n
138
MET
138
H
ALA
139
n
139
ALA
139
H
ALA
140
n
140
ALA
140
H
GLN
141
n
141
GLN
141
H
ILE
142
n
142
ILE
142
H
THR
143
n
143
THR
143
H
ARG
144
n
144
ARG
144
H
ARG
145
n
145
ARG
145
H
LYS
146
n
146
LYS
146
H
TRP
147
n
147
TRP
147
H
GLU
148
n
148
GLU
148
H
GLN
149
n
149
GLN
149
H
ALA
150
n
150
ALA
150
H
GLY
151
n
151
GLY
151
H
ALA
152
n
152
ALA
152
H
ALA
153
n
153
ALA
153
H
GLU
154
n
154
GLU
154
H
TYR
155
n
155
TYR
155
H
TYR
156
n
156
TYR
156
H
ARG
157
n
157
ARG
157
H
ALA
158
n
158
ALA
158
H
TYR
159
n
159
TYR
159
H
LEU
160
n
160
LEU
160
H
GLU
161
n
161
GLU
161
H
GLY
162
n
162
GLY
162
H
GLU
163
n
163
GLU
163
H
CYS
164
n
164
CYS
164
H
VAL
165
n
165
VAL
165
H
GLU
166
n
166
GLU
166
H
TRP
167
n
167
TRP
167
H
LEU
168
n
168
LEU
168
H
HIS
169
n
169
HIS
169
H
ARG
170
n
170
ARG
170
H
TYR
171
n
171
TYR
171
H
LEU
172
n
172
LEU
172
H
LYS
173
n
173
LYS
173
H
ASN
174
n
174
ASN
174
H
GLY
175
n
175
GLY
175
H
ASN
176
n
176
ASN
176
H
ALA
177
n
177
ALA
177
H
THR
178
n
178
THR
178
H
LEU
179
n
179
LEU
179
H
LEU
180
n
180
LEU
180
H
ARG
181
n
181
ARG
181
H
THR
182
n
182
THR
182
H
ASP
183
n
183
ASP
183
H
SER
184
n
184
SER
184
H
PRO
185
n
185
PRO
185
H
LYS
186
n
186
LYS
186
H
ALA
187
n
187
ALA
187
H
HIS
188
n
188
HIS
188
H
VAL
189
n
189
VAL
189
H
THR
190
n
190
THR
190
H
HIS
191
n
191
HIS
191
H
HIS
192
n
192
HIS
192
H
PRO
193
n
193
PRO
193
H
ARG
194
n
194
ARG
194
H
SER
195
n
195
SER
195
H
LYS
196
n
196
LYS
196
H
GLY
197
n
197
GLY
197
H
GLU
198
n
198
GLU
198
H
VAL
199
n
199
VAL
199
H
THR
200
n
200
THR
200
H
LEU
201
n
201
LEU
201
H
ARG
202
n
202
ARG
202
H
CYS
203
n
203
CYS
203
H
TRP
204
n
204
TRP
204
H
ALA
205
n
205
ALA
205
H
LEU
206
n
206
LEU
206
H
GLY
207
n
207
GLY
207
H
PHE
208
n
208
PHE
208
H
TYR
209
n
209
TYR
209
H
PRO
210
n
210
PRO
210
H
ALA
211
n
211
ALA
211
H
ASP
212
n
212
ASP
212
H
ILE
213
n
213
ILE
213
H
THR
214
n
214
THR
214
H
LEU
215
n
215
LEU
215
H
THR
216
n
216
THR
216
H
TRP
217
n
217
TRP
217
H
GLN
218
n
218
GLN
218
H
LEU
219
n
219
LEU
219
H
ASN
220
n
220
ASN
220
H
GLY
221
n
221
GLY
221
H
GLU
222
n
222
GLU
222
H
GLU
223
n
223
GLU
223
H
LEU
224
n
224
LEU
224
H
THR
225
n
225
THR
225
H
GLN
226
n
226
GLN
226
H
ASP
227
n
227
ASP
227
H
MET
228
n
228
MET
228
H
GLU
229
n
229
GLU
229
H
LEU
230
n
230
LEU
230
H
VAL
231
n
231
VAL
231
H
GLU
232
n
232
GLU
232
H
THR
233
n
233
THR
233
H
ARG
234
n
234
ARG
234
H
PRO
235
n
235
PRO
235
H
ALA
236
n
236
ALA
236
H
GLY
237
n
237
GLY
237
H
ASP
238
n
238
ASP
238
H
GLY
239
n
239
GLY
239
H
THR
240
n
240
THR
240
H
PHE
241
n
241
PHE
241
H
GLN
242
n
242
GLN
242
H
LYS
243
n
243
LYS
243
H
TRP
244
n
244
TRP
244
H
ALA
245
n
245
ALA
245
H
SER
246
n
246
SER
246
H
VAL
247
n
247
VAL
247
H
VAL
248
n
248
VAL
248
H
VAL
249
n
249
VAL
249
H
PRO
250
n
250
PRO
250
H
LEU
251
n
251
LEU
251
H
GLY
252
n
252
GLY
252
H
LYS
253
n
253
LYS
253
H
GLU
254
n
254
GLU
254
H
GLN
255
n
255
GLN
255
H
ASN
256
n
256
ASN
256
H
TYR
257
n
257
TYR
257
H
THR
258
n
258
THR
258
H
CYS
259
n
259
CYS
259
H
ARG
260
n
260
ARG
260
H
VAL
261
n
261
VAL
261
H
TYR
262
n
262
TYR
262
H
HIS
263
n
263
HIS
263
H
GLU
264
n
264
GLU
264
H
GLY
265
n
265
GLY
265
H
LEU
266
n
266
LEU
266
H
PRO
267
n
267
PRO
267
H
GLU
268
n
268
GLU
268
H
PRO
269
n
269
PRO
269
H
LEU
270
n
270
LEU
270
H
THR
271
n
271
THR
271
H
LEU
272
n
272
LEU
272
H
ILE
1
n
1
ILE
1
L
GLN
2
n
2
GLN
2
L
LYS
3
n
3
LYS
3
L
THR
4
n
4
THR
4
L
PRO
5
n
5
PRO
5
L
GLN
6
n
6
GLN
6
L
ILE
7
n
7
ILE
7
L
GLN
8
n
8
GLN
8
L
VAL
9
n
9
VAL
9
L
TYR
10
n
10
TYR
10
L
SER
11
n
11
SER
11
L
ARG
12
n
12
ARG
12
L
HIS
13
n
13
HIS
13
L
PRO
14
n
14
PRO
14
L
PRO
15
n
15
PRO
15
L
GLU
16
n
16
GLU
16
L
ASN
17
n
17
ASN
17
L
GLY
18
n
18
GLY
18
L
LYS
19
n
19
LYS
19
L
PRO
20
n
20
PRO
20
L
ASN
21
n
21
ASN
21
L
ILE
22
n
22
ILE
22
L
LEU
23
n
23
LEU
23
L
ASN
24
n
24
ASN
24
L
CYS
25
n
25
CYS
25
L
TYR
26
n
26
TYR
26
L
VAL
27
n
27
VAL
27
L
THR
28
n
28
THR
28
L
GLN
29
n
29
GLN
29
L
PHE
30
n
30
PHE
30
L
HIS
31
n
31
HIS
31
L
PRO
32
n
32
PRO
32
L
PRO
33
n
33
PRO
33
L
HIS
34
n
34
HIS
34
L
ILE
35
n
35
ILE
35
L
GLU
36
n
36
GLU
36
L
ILE
37
n
37
ILE
37
L
GLN
38
n
38
GLN
38
L
MET
39
n
39
MET
39
L
LEU
40
n
40
LEU
40
L
LYS
41
n
41
LYS
41
L
ASN
42
n
42
ASN
42
L
GLY
43
n
43
GLY
43
L
LYS
44
n
44
LYS
44
L
LYS
45
n
45
LYS
45
L
ILE
46
n
46
ILE
46
L
PRO
47
n
47
PRO
47
L
LYS
48
n
48
LYS
48
L
VAL
49
n
49
VAL
49
L
GLU
50
n
50
GLU
50
L
MET
51
n
51
MET
51
L
SER
52
n
52
SER
52
L
ASP
53
n
53
ASP
53
L
MET
54
n
54
MET
54
L
SER
55
n
55
SER
55
L
PHE
56
n
56
PHE
56
L
SER
57
n
57
SER
57
L
LYS
58
n
58
LYS
58
L
ASP
59
n
59
ASP
59
L
TRP
60
n
60
TRP
60
L
SER
61
n
61
SER
61
L
PHE
62
n
62
PHE
62
L
TYR
63
n
63
TYR
63
L
ILE
64
n
64
ILE
64
L
LEU
65
n
65
LEU
65
L
ALA
66
n
66
ALA
66
L
HIS
67
n
67
HIS
67
L
THR
68
n
68
THR
68
L
GLU
69
n
69
GLU
69
L
PHE
70
n
70
PHE
70
L
THR
71
n
71
THR
71
L
PRO
72
n
72
PRO
72
L
THR
73
n
73
THR
73
L
GLU
74
n
74
GLU
74
L
THR
75
n
75
THR
75
L
ASP
76
n
76
ASP
76
L
THR
77
n
77
THR
77
L
TYR
78
n
78
TYR
78
L
ALA
79
n
79
ALA
79
L
CYS
80
n
80
CYS
80
L
ARG
81
n
81
ARG
81
L
VAL
82
n
82
VAL
82
L
LYS
83
n
83
LYS
83
L
HIS
84
n
84
HIS
84
L
ASP
85
n
85
ASP
85
L
SER
86
n
86
SER
86
L
MET
87
n
87
MET
87
L
ALA
88
n
88
ALA
88
L
GLU
89
n
89
GLU
89
L
PRO
90
n
90
PRO
90
L
LYS
91
n
91
LYS
91
L
THR
92
n
92
THR
92
L
VAL
93
n
93
VAL
93
L
TYR
94
n
94
TYR
94
L
TRP
95
n
95
TRP
95
L
ASP
96
n
96
ASP
96
L
ARG
97
n
97
ARG
97
L
ASP
98
n
98
ASP
98
L
MET
99
n
99
MET
99
L
ALA
1
n
1
ALA
1
P
PRO
2
n
2
PRO
2
P
ALA
3
n
3
ALA
3
P
ALA
4
n
4
ALA
4
P
ALA
5
n
5
ALA
5
P
ALA
6
n
6
ALA
6
P
ALA
7
n
7
ALA
7
P
ALA
8
n
8
ALA
8
P
MET
9
n
9
MET
9
P
GLN
1
n
1
GLN
1
Q
LEU
2
n
2
LEU
2
Q
SER
3
n
3
SER
3
Q
PRO
4
n
4
PRO
4
Q
PHE
5
n
5
PHE
5
Q
PRO
6
n
6
PRO
6
Q
PHE
7
n
7
PHE
7
Q
ASP
8
n
8
ASP
8
Q
LEU
9
n
9
LEU
9
Q
author_defined_assembly
4
tetrameric
H
ASN
86
GLYCOSYLATION SITE
A
ASN
86
ASN
H
ASN
176
GLYCOSYLATION SITE
A
ASN
176
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
O
LYS
31
A
O
LYS
31
H
N
VAL
28
A
N
VAL
28
H
O
TYR
27
A
O
TYR
27
H
N
ARG
6
A
N
ARG
6
H
O
HIS
3
A
O
HIS
3
H
N
VAL
103
A
N
VAL
103
H
O
GLN
96
A
O
GLN
96
H
N
ALA
117
A
N
ALA
117
H
O
PHE
116
A
O
PHE
116
H
N
ILE
124
A
N
ILE
124
H
O
THR
214
A
O
THR
214
H
N
TYR
262
A
N
TYR
262
H
O
VAL
199
A
O
VAL
199
H
N
VAL
249
A
N
VAL
249
L
O
LEU
23
B
O
LEU
23
L
N
THR
68
B
N
THR
68
L
O
GLU
36
B
O
GLU
36
L
N
LYS
83
B
N
LYS
83
L
O
CYS
80
B
O
CYS
80
L
N
VAL
93
B
N
VAL
93
1
A
C1
NAG
1
WRONG HAND
1
H
C1
NAG
273
WRONG HAND
1
P
Q
O
O
PRO
LEU
2
2
0.12
1
P
Q
CA
CA
ALA
ASP
8
8
0.14
1
P
Q
CB
CB
ALA
SER
3
3
0.14
1
P
Q
C
C
PRO
LEU
2
2
0.15
1
P
Q
CA
CA
PRO
LEU
2
2
0.15
1
P
Q
CA
CA
ALA
SER
3
3
0.16
1
P
Q
N
N
ALA
SER
3
3
0.16
1
P
Q
N
N
ALA
ASP
8
8
0.17
1
P
Q
N
N
ALA
PHE
7
7
0.19
1
P
Q
C
C
ALA
PHE
7
7
0.19
1
P
Q
C
C
ALA
SER
3
3
0.20
1
P
Q
N
N
MET
LEU
9
9
0.22
1
P
Q
C
C
ALA
GLN
1
1
0.23
1
P
Q
O
O
ALA
GLN
1
1
0.23
1
P
Q
O
O
ALA
PRO
4
4
0.23
1
P
Q
CA
CA
ALA
GLN
1
1
0.24
1
P
Q
CA
CA
ALA
PHE
7
7
0.25
1
P
Q
N
N
PRO
LEU
2
2
0.26
1
P
Q
CB
CB
ALA
GLN
1
1
0.27
1
P
Q
O
O
ALA
PHE
7
7
0.28
1
P
Q
N
N
ALA
PRO
4
4
0.28
1
P
Q
C
C
ALA
PRO
6
6
0.29
1
P
Q
O
O
ALA
SER
3
3
0.31
1
P
Q
C
C
ALA
PRO
4
4
0.32
1
P
Q
CA
CA
ALA
PRO
4
4
0.32
1
P
Q
O
O
ALA
PRO
6
6
0.32
1
P
Q
CB
CB
ALA
PRO
4
4
0.40
1
P
Q
CB
CB
ALA
ASP
8
8
0.41
1
P
Q
CB
CB
ALA
PRO
6
6
0.44
1
P
Q
N
N
ALA
PRO
6
6
0.45
1
P
Q
CA
CA
MET
LEU
9
9
0.45
1
P
Q
CA
CA
ALA
PRO
6
6
0.46
1
P
Q
C
C
ALA
ASP
8
8
0.46
1
P
Q
C
C
ALA
PHE
5
5
0.53
1
P
Q
CB
CB
ALA
PHE
7
7
0.54
1
P
Q
O
O
MET
LEU
9
9
0.54
1
P
Q
C
C
MET
LEU
9
9
0.55
1
P
Q
CG
CG
MET
LEU
9
9
0.56
1
P
Q
CB
CB
MET
LEU
9
9
0.57
1
P
Q
O
O
ALA
PHE
5
5
0.58
1
P
Q
N
N
ALA
PHE
5
5
0.58
1
P
Q
CA
CA
ALA
PHE
5
5
0.62
1
P
Q
CB
CB
PRO
LEU
2
2
0.63
1
P
Q
N
N
ALA
GLN
1
1
0.64
1
P
Q
OXT
OXT
MET
LEU
9
9
0.69
1
P
Q
CB
CB
ALA
PHE
5
5
0.73
1
P
Q
CB
CG
ALA
PHE
5
5
0.75
1
P
Q
O
C
MET
LEU
9
9
0.79
1
P
Q
SD
CD2
MET
LEU
9
9
0.89
1
P
Q
O
O
ALA
ASP
8
8
0.92
1
P
Q
C
O
ALA
PRO
4
4
1.01
1
P
Q
C
O
ALA
GLN
1
1
1.02
1
P
Q
O
C
ALA
PHE
5
5
1.03
1
P
Q
O
C
ALA
PRO
6
6
1.04
1
P
Q
CA
N
ALA
PRO
6
6
1.05
1
P
Q
CB
CG
ALA
PRO
6
6
1.05
1
P
Q
C
O
ALA
SER
3
3
1.09
1
P
Q
CG
CD2
MET
LEU
9
9
1.11
1
P
Q
N
C
ALA
SER
4
3
1.15
1
P
Q
C
CA
MET
LEU
9
9
1.15
1
P
Q
N
C
PRO
GLN
2
1
1.15
1
P
Q
O
C
PRO
LEU
2
2
1.15
1
P
Q
C
CA
ALA
PHE
5
5
1.17
1
P
Q
O
C
ALA
PHE
7
7
1.18
1
P
Q
N
C
ALA
PHE
8
7
1.21
1
P
Q
CB
CG
PRO
LEU
2
2
1.23
1
P
Q
CB
CA
ALA
PRO
4
4
1.24
1
P
Q
CB
CG
ALA
GLN
1
1
1.27
1
P
Q
CB
CG
ALA
PHE
7
7
1.28
1
P
Q
C
N
ALA
LEU
8
9
1.28
1
P
Q
CA
CB
MET
LEU
9
9
1.28
1
P
Q
N
CA
ALA
PHE
5
5
1.28
1
P
Q
N
CD
ALA
PRO
6
6
1.29
1
P
Q
C
O
ALA
PHE
7
7
1.29
1
P
Q
CA
N
ALA
PHE
7
7
1.29
1
P
Q
C
CA
ALA
PRO
6
6
1.30
1
P
Q
CA
CB
ALA
PHE
5
5
1.30
1
P
Q
N
C
ALA
PHE
6
5
1.30
1
P
Q
N
C
ALA
LEU
3
2
1.31
1
P
Q
C
OXT
MET
LEU
9
9
1.32
1
P
Q
CA
N
ALA
SER
3
3
1.32
1
P
Q
C
O
PRO
LEU
2
2
1.33
1
P
Q
CA
N
ALA
ASP
8
8
1.33
1
P
Q
N
C
ALA
PRO
7
6
1.35
1
P
Q
O
C
ALA
ASP
8
8
1.35
1
P
Q
C
CA
ALA
PHE
7
7
1.35
1
P
Q
CA
C
ALA
PRO
4
4
1.36
1
P
Q
CA
CB
ALA
GLN
1
1
1.36
1
P
Q
C
CA
PRO
LEU
2
2
1.36
1
P
Q
N
C
ALA
PRO
5
4
1.36
1
P
Q
C
N
ALA
PHE
6
7
1.37
1
P
Q
C
N
PRO
SER
2
3
1.37
1
P
Q
CD
N
PRO
LEU
2
2
1.38
1
P
Q
CB
CA
ALA
ASP
8
8
1.38
1
P
Q
O
C
ALA
SER
3
3
1.41
1
P
Q
CA
N
PRO
LEU
2
2
1.42
1
P
Q
C
N
ALA
ASP
7
8
1.43
1
P
Q
C
N
ALA
PHE
4
5
1.43
1
P
Q
O
C
ALA
GLN
1
1
1.44
1
P
Q
C
O
ALA
ASP
8
8
1.44
1
P
Q
N
C
MET
ASP
9
8
1.44
1
P
Q
CA
CB
PRO
LEU
2
2
1.45
1
P
Q
CB
CA
ALA
SER
3
3
1.45
1
P
Q
CA
N
ALA
PRO
4
4
1.45
1
P
Q
OXT
C
MET
LEU
9
9
1.46
1
P
Q
CA
N
ALA
GLN
1
1
1.46
1
P
Q
CB
CA
ALA
PHE
7
7
1.47
1
P
Q
CB
OG
ALA
SER
3
3
1.47
1
P
Q
O
C
ALA
PRO
4
4
1.48
1
P
Q
C
O
ALA
PRO
6
6
1.48
1
P
Q
CA
N
MET
LEU
9
9
1.48
1
P
Q
N
CA
PRO
LEU
2
2
1.50
1
P
Q
CG
CB
MET
LEU
9
9
1.50
1
P
Q
N
CA
MET
LEU
9
9
1.52
1
P
Q
C
CA
ALA
SER
3
3
1.52
1
P
Q
CA
C
ALA
GLN
1
1
1.53
1
P
Q
C
N
ALA
PRO
3
4
1.53
1
P
Q
C
CA
ALA
ASP
8
8
1.53
1
P
Q
N
CA
ALA
PRO
4
4
1.53
1
P
Q
N
CA
ALA
ASP
8
8
1.53
1
P
Q
C
N
ALA
LEU
1
2
1.53
1
P
Q
C
N
ALA
PRO
5
6
1.53
1
P
Q
C
CA
ALA
GLN
1
1
1.54
1
P
Q
CA
C
ALA
ASP
8
8
1.54
1
P
Q
CA
C
ALA
SER
3
3
1.56
1
P
Q
CA
CB
ALA
PRO
6
6
1.56
1
P
Q
N
CA
ALA
GLN
1
1
1.58
1
P
Q
C
O
ALA
PHE
5
5
1.60
1
P
Q
CB
CA
PRO
LEU
2
2
1.61
1
P
Q
N
CA
ALA
SER
3
3
1.62
1
P
Q
CA
CB
ALA
SER
3
3
1.62
1
P
Q
CG
CD2
PRO
LEU
2
2
1.62
1
P
Q
N
CA
ALA
PHE
7
7
1.64
1
P
Q
CA
CB
ALA
ASP
8
8
1.64
1
P
Q
CA
C
PRO
LEU
2
2
1.65
1
P
Q
CB
CA
ALA
PRO
6
6
1.65
1
P
Q
CA
CB
ALA
PHE
7
7
1.66
1
P
Q
CB
CA
ALA
GLN
1
1
1.68
1
P
Q
CB
CG
MET
LEU
9
9
1.70
1
P
Q
CA
C
ALA
PHE
7
7
1.71
1
P
Q
N
CD
ALA
PRO
4
4
1.72
1
P
Q
C
O
MET
LEU
9
9
1.75
1
P
Q
C
CA
ALA
PRO
4
4
1.77
1
P
Q
CA
N
ALA
PHE
5
5
1.82
1
P
Q
CB
CD1
ALA
PHE
5
5
1.83
1
P
Q
CA
CB
ALA
PRO
4
4
1.84
1
H
Q
NH2
OE1
ARG
GLN
62
1
1.84
1
P
Q
CA
C
ALA
PRO
6
6
1.85
1
P
Q
CB
CG
ALA
PRO
4
4
1.85
1
P
Q
CG
CD1
MET
LEU
9
9
1.85
1
P
Q
O
OXT
MET
LEU
9
9
1.85
1
P
Q
CB
CA
MET
LEU
9
9
1.89
1
P
Q
CB
CD2
ALA
PHE
5
5
1.89
1
P
Q
N
CA
ALA
PRO
6
6
1.90
1
P
Q
CB
CG
ALA
ASP
8
8
1.92
1
P
Q
CG
CB
PRO
LEU
2
2
1.92
1
P
Q
CB
CA
ALA
PHE
5
5
1.94
1
P
Q
CB
CD2
PRO
LEU
2
2
1.94
1
P
Q
CA
CG
ALA
PHE
5
5
1.94
1
P
Q
CE
CD2
MET
LEU
9
9
1.96
1
P
Q
O
CA
MET
LEU
9
9
1.97
1
P
Q
CA
CD
ALA
PRO
6
6
1.97
1
P
Q
CA
C
MET
LEU
9
9
1.98
1
P
Q
CA
C
ALA
PHE
5
5
1.98
1
P
Q
O
CA
ALA
PHE
5
5
2.00
1
P
Q
C
CB
MET
LEU
9
9
2.02
1
P
Q
CB
CD
ALA
PRO
6
6
2.03
1
P
Q
N
O
PRO
GLN
2
1
2.03
1
P
Q
N
O
ALA
SER
4
3
2.04
1
P
Q
N
CB
ALA
PHE
5
5
2.05
1
P
Q
N
O
ALA
PRO
5
4
2.06
1
P
Q
CB
CD1
ALA
PHE
7
7
2.06
1
P
Q
C
CB
ALA
PHE
5
5
2.07
1
H
Q
OH
CZ
TYR
PHE
156
5
2.08
1
P
Q
O
CA
ALA
PRO
6
6
2.10
1
P
Q
CA
CG
ALA
PRO
6
6
2.12
1
P
Q
OXT
CA
MET
LEU
9
9
2.12
1
P
Q
CG
CG
PRO
LEU
2
2
2.13
1
P
Q
N
O
ALA
PHE
8
7
2.14
1
P
Q
N
CA
ALA
PHE
6
5
2.16
1
P
Q
CA
C
ALA
PHE
6
5
2.17
1
P
Q
CB
N
PRO
LEU
2
2
2.18
1
P
Q
O
N
ALA
LEU
8
9
2.19
1
P
Q
C
N
ALA
PRO
6
6
2.19
1
H
H
O
ND2
ARG
ASN
170
174
2.19
1
9.71
1.50
119.30
129.01
H
H
H
C
N
CA
GLY
PRO
PRO
56
57
57
Y
1
9.66
1.50
119.30
128.96
H
H
H
C
N
CA
ARG
PRO
PRO
234
235
235
Y
1
9.22
1.50
119.30
128.52
P
P
P
C
N
CA
ALA
PRO
PRO
1
2
2
Y
1
H
PRO
2
-46.66
163.53
1
H
PRO
15
-34.98
-71.49
1
H
GLU
19
-170.84
140.87
1
H
ARG
21
-104.33
67.56
1
H
ASP
29
60.31
65.52
1
H
ASN
30
59.57
2.97
1
H
ASP
37
-167.69
89.56
1
H
SER
38
-58.56
26.77
1
H
GLN
48
-99.70
-60.14
1
H
TRP
51
-59.68
-2.16
1
H
GLN
54
-62.37
10.89
1
H
THR
64
-43.68
-17.51
1
H
ASN
77
-51.31
-77.29
1
H
LEU
78
-26.07
-37.98
1
H
ASN
86
33.82
45.17
1
H
ALA
89
-50.71
90.73
1
H
THR
94
-160.54
105.79
1
H
ASP
119
81.05
24.84
1
H
ASP
129
-52.76
-6.42
1
H
LEU
160
-50.79
-74.94
1
H
HIS
188
-172.22
133.36
1
H
SER
195
-44.96
-9.89
1
H
PRO
210
-65.26
-174.50
1
H
ASP
212
-48.44
100.36
1
H
LEU
219
-174.00
92.15
1
H
ASN
220
58.85
71.26
1
H
LEU
224
-67.73
52.38
1
H
THR
233
-42.65
108.53
1
H
PHE
241
-100.65
-163.43
1
H
GLN
255
-37.40
-21.84
1
H
GLU
264
-69.37
87.96
1
H
PRO
269
-39.35
151.10
1
L
TYR
10
179.05
158.05
1
L
ASN
17
-23.69
115.08
1
L
PRO
20
-50.99
103.30
1
L
CYS
25
-160.31
75.86
1
L
HIS
31
-178.88
130.82
1
L
PRO
33
-43.24
-15.36
1
L
LYS
41
-167.51
110.13
1
L
MET
54
-58.89
85.68
1
L
ASP
59
-68.96
8.99
1
L
GLU
74
-37.11
-22.02
1
L
HIS
84
-162.07
119.72
1
L
ASP
85
-26.03
-40.64
1
L
SER
86
-72.40
41.91
1
L
MET
87
-176.51
141.65
1
L
ARG
97
-21.15
-58.59
1
P
ALA
7
-54.64
106.43
1
Q
PHE
7
-43.92
99.79
PARHCSDX.PRO
TOPHCSDX.PRO
PARAM3_MOD.CHO
TOPH3.CHO
TOPH19SYED.PEP
28.
-4.192
0.
-6.204
2.918
0.
1.274
SOME LIBRARIES WERE MODIFIED IN-HOUSE TO PROVIDE MISSING CARBOHYDRATE AND PROTEIN SPECIFICATIONS. X-PLOR 3.1 ALSO WAS USED.
0.371
0.016
0.221
0.221
3.1
6.0
556
7935
6.
85.
RANDOM
100000.
0.1
1
ONE B-VALUE PER RESIDUE
THROUGHOUT
1.
MOLECULAR REPLACEMENT
PDB ENTRY 1HOC
0.60
0.35
6.0
3.1
6.0
0
3129
42
0
3087
0.015
1.8
25.8
1.8
0.477
0.062
0.291
3.22
59
783
8
10.6
72.
2.8
15.
1LDP
11809
0.
0.113
0.113
1
5.6
2.2
81.
0.358
2.8
2.9
1.8
0.358
1.4
63.6
data scaling
XDS
data scaling
SCALEPACK
model building
X-PLOR
refinement
X-PLOR
3.825
data reduction
XDS
phasing
X-PLOR
CRYSTAL STRUCTURE OF MURINE MHC CLASS I H-2LD WITH A MIXTURE OF BOUND PEPTIDES
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
H
PRO
57
A
PRO
57
HELX_P
H
TYR
84
A
TYR
84
1
1
28
H
MET
138
A
MET
138
HELX_P
H
ALA
150
A
ALA
150
1
2
13
H
ALA
152
A
ALA
152
HELX_P
H
GLU
161
A
GLU
161
1
3
10
H
GLU
163
A
GLU
163
HELX_P
H
ASN
174
A
ASN
174
1
4
12
H
ASN
176
A
ASN
176
HELX_P
H
LEU
179
A
LEU
179
1
5
4
H
GLU
254
A
GLU
254
HELX_P
H
ASN
256
A
ASN
256
5
6
3
disulf
2.002
H
CYS
101
A
SG
CYS
101
1_555
H
CYS
164
A
SG
CYS
164
1_555
disulf
2.033
H
CYS
203
A
SG
CYS
203
1_555
H
CYS
259
A
SG
CYS
259
1_555
disulf
2.011
L
CYS
25
B
SG
CYS
25
1_555
L
CYS
80
B
SG
CYS
80
1_555
covale
1.495
one
N-Glycosylation
H
ASN
86
A
ND2
ASN
86
1_555
H
NAG
273
F
C1
NAG
1_555
covale
1.450
one
N-Glycosylation
H
ASN
176
A
ND2
ASN
176
1_555
A
NAG
1
E
C1
NAG
1_555
covale
1.438
both
A
NAG
1
E
O4
NAG
1_555
A
NDG
2
E
C1
NDG
1_555
COMPLEX (MHC I/PEPTIDE)
COMPLEX (MHC I-PEPTIDE), MAJOR HISTOCOMPATIBILITY COMPLEX, IMMUNOLOGY, CELLULAR IMMUNITY, PEPTIDE ANTIGEN, CELL SURFACE RECEPTOR, ANTIGEN RECEPTOR, ANTIGEN PRESENTATION, COMPLEX (MHC I-PEPTIDE) complex
H
TYR
209
A
TYR
209
1
H
PRO
210
A
PRO
210
0.38
L
HIS
31
B
HIS
31
1
L
PRO
32
B
PRO
32
-1.91
HA1L_MOUSE
UNP
1
1
P01897
MGAMAPRTLLLLLAAALAPTQTRAGPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEG
PEYWERITQIAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAA
DMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLT
WQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPSTDSYMVIVAVLGVLGAM
AIIGAVVAFVMKRRRNTGGKGGDYALAPGSQSSEMSLRDCKA
B2MG_MOUSE
UNP
2
1
P01887
MARSVTLVFLVLVSLTGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDW
SFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM
1LDP
PDB
3
1LDP
1LDP
PDB
4
1LDP
25
296
1LDP
1
272
P01897
H
1
1
272
21
119
1LDP
1
99
P01887
L
2
1
99
1
9
1LDP
1
9
1LDP
P
3
1
9
1
9
1LDP
1
9
1LDP
Q
4
1
9
6
2
2
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
LYS
31
A
LYS
31
H
ARG
35
A
ARG
35
H
VAL
25
A
VAL
25
H
VAL
28
A
VAL
28
H
HIS
3
A
HIS
3
H
VAL
12
A
VAL
12
H
THR
94
A
THR
94
H
VAL
103
A
VAL
103
H
LEU
109
A
LEU
109
H
TYR
118
A
TYR
118
H
ASP
122
A
ASP
122
H
ALA
125
A
ALA
125
H
ILE
213
A
ILE
213
H
GLN
218
A
GLN
218
H
THR
258
A
THR
258
H
HIS
263
A
HIS
263
H
GLU
198
A
GLU
198
H
PHE
208
A
PHE
208
H
PHE
241
A
PHE
241
H
PRO
250
A
PRO
250
L
LEU
23
B
LEU
23
L
TYR
26
B
TYR
26
L
LEU
65
B
LEU
65
L
THR
68
B
THR
68
L
ILE
35
B
ILE
35
L
LYS
41
B
LYS
41
L
TYR
78
B
TYR
78
L
HIS
84
B
HIS
84
L
LYS
91
B
LYS
91
L
TYR
94
B
TYR
94
THIS NINE AMINO ACID MODEL BEST FITS THE ELECTRON DENSITY REPRESENTING A MIXTURE OF PEPTIDES BOUND IN THE H-2LD PEPTIDE-BINDING GROOVE. IT WAS USED THROUGHOUT H-2LD REFINEMENT.
Unknown
1
THIS NINE RESIDUE MODEL OF ANTIGENIC PEPTIDE QL9 ALSO FITS WELL TO THE ELECTRON DENSITY OF THE H-2LD BOUND PEPTIDE MIXTURE. THESE COORDINATES HAVE BEEN REFINED IN X-PLOR TOGETHER WITH THE FINAL MODELS OF THE H AND L CHAINS.
Unknown
1
P
ALA
1
C
ALA
1
1
1_555
Q
GLN
1
D
GLN
1
1
1_555
3
P 1 2 1