0.007292
0.000000
0.000000
0.000000
0.005565
0.000000
0.000000
0.000000
0.010302
0.00000
0.00000
0.00000
Chen-Park, F.
Huang, D.B.
Ghosh, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
137.131
179.697
97.068
C9 H12 I N2 O8 P
434.078
n
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
O
N
8
N
O
N
9
N
I
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
N
N
35
S
C
N
36
N
C
N
37
N
O
N
38
N
C
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
S
C
N
49
N
C
N
50
N
O
N
51
N
C
N
52
N
C
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
N
N
58
N
O
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
O
N
81
N
N
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
N
N
92
S
C
N
93
N
C
N
94
N
O
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
R
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
S
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
O
N
122
N
P
N
123
N
O
N
124
N
O
N
125
N
O
N
126
N
C
N
127
R
C
N
128
N
O
N
129
S
C
N
130
N
O
N
131
N
C
N
132
R
C
Y
133
N
N
Y
134
N
C
Y
135
N
N
Y
136
N
C
Y
137
N
C
N
138
N
N
Y
139
N
N
Y
140
N
C
Y
141
N
N
Y
142
N
C
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
O
N
158
N
P
N
159
N
O
N
160
N
O
N
161
N
O
N
162
N
C
N
163
R
C
N
164
N
O
N
165
S
C
N
166
N
O
N
167
N
C
N
168
R
C
N
169
N
N
N
170
N
C
N
171
N
O
N
172
N
N
N
173
N
C
N
174
N
N
N
175
N
C
N
176
N
C
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
P
N
193
N
O
N
194
N
O
N
195
N
O
N
196
N
C
N
197
R
C
N
198
N
O
N
199
S
C
N
200
N
O
N
201
N
C
N
202
R
C
Y
203
N
N
Y
204
N
C
Y
205
N
N
Y
206
N
C
N
207
N
C
N
208
N
O
N
209
N
N
N
210
N
C
N
211
N
N
N
212
N
N
Y
213
N
C
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
O
N
229
N
P
N
230
N
O
N
231
N
O
N
232
N
O
N
233
N
C
N
234
R
C
N
235
N
O
N
236
S
C
N
237
N
O
N
238
N
C
N
239
R
C
N
240
N
N
N
241
N
C
N
242
N
O
N
243
N
N
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
C
N
270
N
C
N
271
N
O
N
272
N
N
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
O
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
N
C
N
305
N
C
N
306
N
O
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
Y
318
N
C
Y
319
N
N
Y
320
N
C
Y
321
N
C
Y
322
N
N
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
S
C
N
342
N
C
N
343
N
C
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
N
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
C
N
412
N
S
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
N
C
N
454
N
C
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
N
N
467
S
C
N
468
N
C
N
469
N
O
N
470
N
C
N
471
N
O
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
N
N
481
S
C
N
482
N
C
N
483
N
O
N
484
R
C
N
485
N
O
N
486
N
C
N
487
N
O
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
N
N
498
S
C
N
499
N
C
N
500
N
O
N
501
N
C
Y
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
N
Y
506
N
C
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
N
511
N
O
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
N
N
525
S
C
N
526
N
C
N
527
N
O
N
528
N
C
Y
529
N
C
Y
530
N
C
Y
531
N
C
Y
532
N
C
Y
533
N
C
Y
534
N
C
N
535
N
O
N
536
N
O
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
N
N
549
S
C
N
550
N
C
N
551
N
O
N
552
N
C
N
553
N
C
N
554
N
C
N
555
N
O
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
sing
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
Y
145
N
sing
Y
146
N
doub
N
147
N
sing
Y
148
N
doub
N
149
N
sing
N
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
Y
213
N
sing
Y
214
N
sing
Y
215
N
doub
N
216
N
sing
Y
217
N
sing
N
218
N
sing
Y
219
N
doub
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
Y
325
N
doub
N
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
doub
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
doub
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
Y
500
N
doub
Y
501
N
sing
Y
502
N
sing
N
503
N
sing
Y
504
N
doub
Y
505
N
sing
Y
506
N
sing
N
507
N
sing
Y
508
N
sing
Y
509
N
doub
N
510
N
sing
Y
511
N
doub
N
512
N
sing
Y
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
doub
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
Y
528
N
doub
Y
529
N
sing
Y
530
N
sing
N
531
N
sing
Y
532
N
doub
N
533
N
sing
Y
534
N
doub
N
535
N
sing
Y
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
doub
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
24701
24708
10.1074/jbc.M200007200
11970949
The kB DNA sequence from the HIV Long Terminal Repeat functions as an allosteric regulator of HIV transcription
2002
10.2210/pdb1lei/pdb
pdb_00001lei
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
IMAGE PLATE
1999-08-08
MARRESEARCH
MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
kB DNA
5269.450
5'-D(*CP*TP*CP*AP*GP*GP*GP*AP*AP*AP*GP*TP*AP*CP*AP*GP*A)-3'
1
syn
polymer
kB DNA
5591.812
5'-D(*TP*CP*TP*GP*5ITP*AP*CP*5ITP*5ITP*5ITP*CP*CP*CP*TP*GP*AP*G)-3'
1
syn
polymer
31115.236
NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT
p65 RHR
1
man
polymer
35056.066
NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT
p50 RHR
1
man
polymer
18.015
water
23
nat
water
NF-kB p65
NF-kB p50
no
no
(DC)(DT)(DC)(DA)(DG)(DG)(DG)(DA)(DA)(DA)(DG)(DT)(DA)(DC)(DA)(DG)(DA)
CTCAGGGAAAGTACAGA
C
polydeoxyribonucleotide
no
yes
(DT)(DC)(DT)(DG)(5IU)(DA)(DC)(5IU)(5IU)(5IU)(DC)(DC)(DC)(DT)(DG)(DA)(DG)
TCTGUACUUUCCCTGAG
D
polydeoxyribonucleotide
no
no
MAYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRD
GYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTP
VLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPY
ADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPD
MAYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRD
GYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTP
VLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPY
ADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPD
A
polypeptide(L)
no
no
MGPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKHCE
DGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQA
AVQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDD
IQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPE
MGPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKHCE
DGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQA
AVQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDD
IQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPE
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
rela
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
t7 promoter
ET29b
house mouse
Mus
Escherichia
Escherichia coli
sample
nfkb1
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
t7 promoter
ET29b
1
3.86
68.13
SMALL TUBES
6.5
PEG 3350, CaCl2, sodium spermine, pH 6.5, SMALL TUBES, temperature 291K
291
PEG 3350
1
CaCl2
1
sodium spermine
1
CaCl2
2
-1.062
1
19
C
1
D
17
4.426
C_DC1:DG17_D
1
9.689
0.160
0.426
-0.035
27.327
1
20
C
2
D
16
-14.598
C_DT2:DA16_D
2
-25.824
-0.137
0.279
-0.052
19.391
1
19
C
3
D
15
3.987
C_DC3:DG15_D
3
-20.945
0.141
-0.239
0.025
-3.080
1
20
C
4
D
14
-10.994
C_DA4:DT14_D
4
-30.541
0.208
0.164
0.103
-1.180
1
19
C
5
D
13
1.313
C_DG5:DC13_D
5
-21.146
-0.135
0.318
-0.137
18.176
1
19
C
6
D
12
-2.451
C_DG6:DC12_D
6
6.968
-0.065
1.040
-0.089
21.259
1
19
C
7
D
11
1.767
C_DG7:DC11_D
7
-9.967
-0.188
0.623
0.038
15.352
1
20
C
8
D
10
3.529
C_DA8:5IU10_D
8
-16.750
-0.119
0.530
-0.005
18.427
1
20
C
9
D
9
7.342
C_DA9:5IU9_D
9
-14.328
-0.323
0.780
-0.033
1.120
1
20
C
10
D
8
7.192
C_DA10:5IU8_D
10
-12.890
-0.453
0.763
-0.120
-3.281
1
19
C
11
D
7
-3.067
C_DG11:DC7_D
11
-24.244
-0.105
0.849
-0.189
-24.309
1
20
C
12
D
6
-2.606
C_DT12:DA6_D
12
-16.753
-0.278
0.852
-0.094
6.320
1
20
C
13
D
5
6.418
C_DA13:5IU5_D
13
-5.275
-0.145
1.642
-0.479
10.419
1
19
C
14
D
4
3.008
C_DC14:DG4_D
14
3.742
0.136
0.799
-0.056
29.804
1
20
C
15
D
3
0.282
C_DA15:DT3_D
15
-15.934
0.071
0.645
0.006
20.544
1
19
C
16
D
2
-5.124
C_DG16:DC2_D
16
-31.684
0.278
0.875
-0.195
-35.691
1
20
C
17
D
1
-89.263
C_DA17:DT1_D
17
-25.000
-0.614
-1.867
1.246
2.699
36.853
C
C
1
2
-8.385
D
D
17
16
2.688
-5.284
-2.205
-0.360
CC_DC1DT2:DA16DG17_DD
1
0.222
-0.352
36.485
0.023
3.513
3.812
32.914
C
C
2
3
9.470
D
D
16
15
3.747
5.288
0.808
0.187
CC_DT2DC3:DG15DA16_DD
2
8.255
-14.783
31.459
-0.738
0.240
3.951
44.188
C
C
3
4
0.073
D
D
15
14
3.849
0.054
-0.885
1.377
CC_DC3DA4:DT14DG15_DD
3
-10.252
13.742
43.040
1.824
0.016
2.661
28.198
C
C
4
5
20.722
D
D
14
13
3.303
9.827
0.653
-0.750
CC_DA4DG5:DC13DT14_DD
4
-5.399
11.384
25.914
-3.722
-2.540
2.571
52.314
C
C
5
6
-36.271
D
D
13
12
3.312
-30.096
0.384
0.168
CC_DG5DG6:DC12DC13_DD
5
-8.427
10.155
42.489
2.199
-0.998
3.490
33.518
C
C
6
7
-8.931
D
D
12
11
3.536
-5.118
-0.338
-0.414
CC_DG6DG7:DC11DC12_DD
6
4.201
-7.330
32.876
0.196
1.336
3.044
34.591
C
C
7
8
4.921
D
D
11
10
3.160
2.922
-0.092
-1.290
CC_DG7DA8:5IU10DC11_DD
7
-0.265
0.447
34.470
-2.598
0.117
3.079
32.253
C
C
8
9
-15.031
D
D
10
9
3.025
-8.254
0.569
-0.804
CC_DA8DA9:5IU95IU10_DD
8
-2.485
4.525
31.109
-0.051
-1.443
3.619
39.025
C
C
9
10
5.603
D
D
9
8
3.589
3.701
-0.789
-0.419
CC_DA9DA10:5IU85IU9_DD
9
-9.708
14.697
37.668
-1.129
-0.135
3.552
34.686
C
C
10
11
-9.803
D
D
8
7
3.384
-5.811
-0.768
-0.979
CC_DA10DG11:DC75IU8_DD
10
-3.148
5.310
34.070
-0.688
0.772
3.982
40.233
C
C
11
12
-12.344
D
D
7
6
3.775
-8.433
-0.415
-1.385
CC_DG11DT12:DA6DC7_DD
11
-0.586
0.858
39.371
-0.866
0.524
2.340
30.389
C
C
12
13
-13.739
D
D
6
5
2.278
-7.078
0.215
-0.995
CC_DT12DA13:5IU5DA6_DD
12
-6.832
13.261
28.788
-0.868
-1.405
3.115
25.636
C
C
13
14
-3.087
D
D
5
4
3.166
-1.367
-0.765
-0.612
CC_DA13DC14:DG45IU5_DD
13
2.260
-5.102
25.502
-1.007
2.340
2.685
36.463
C
C
14
15
1.864
D
D
4
3
2.680
1.166
-0.694
-0.264
CC_DC14DA15:DT3DG4_DD
14
-0.787
1.258
36.437
-0.554
1.019
3.724
33.279
C
C
15
16
5.223
D
D
3
2
3.489
2.955
-1.408
0.066
CC_DA15DG16:DC2DT3_DD
15
-8.662
15.311
32.030
-0.440
0.833
2.974
69.751
C
C
16
17
8.859
D
D
2
1
3.468
10.006
-1.383
-0.274
CC_DG16DA17:DT1DC2_DD
16
18.835
-16.675
66.807
-0.603
1.894
database_2
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2003-04-15
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-12-21
1
4
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
1VKX contains the same protein complexed with a kB DNA
RCSB
Y
RCSB
2002-04-09
REL
HOH
water
1VKX
PDB ENTRY 1VKX
PDB
experimental model
HOH
700
5
HOH
HOH
700
A
HOH
701
5
HOH
HOH
701
A
HOH
702
5
HOH
HOH
702
A
HOH
706
5
HOH
HOH
706
A
HOH
707
5
HOH
HOH
707
A
HOH
709
5
HOH
HOH
709
A
HOH
711
5
HOH
HOH
711
A
HOH
712
5
HOH
HOH
712
A
HOH
714
5
HOH
HOH
714
A
HOH
715
5
HOH
HOH
715
A
HOH
716
5
HOH
HOH
716
A
HOH
719
5
HOH
HOH
719
A
HOH
720
5
HOH
HOH
720
A
HOH
721
5
HOH
HOH
721
A
HOH
722
5
HOH
HOH
722
A
HOH
703
5
HOH
HOH
703
B
HOH
704
5
HOH
HOH
704
B
HOH
705
5
HOH
HOH
705
B
HOH
708
5
HOH
HOH
708
B
HOH
710
5
HOH
HOH
710
B
HOH
713
5
HOH
HOH
713
B
HOH
717
5
HOH
HOH
717
B
HOH
718
5
HOH
HOH
718
B
C
1
n
1
DC
1
C
T
2
n
2
DT
2
C
C
3
n
3
DC
3
C
A
4
n
4
DA
4
C
G
5
n
5
DG
5
C
G
6
n
6
DG
6
C
G
7
n
7
DG
7
C
A
8
n
8
DA
8
C
A
9
n
9
DA
9
C
A
10
n
10
DA
10
C
G
11
n
11
DG
11
C
T
12
n
12
DT
12
C
A
13
n
13
DA
13
C
C
14
n
14
DC
14
C
A
15
n
15
DA
15
C
G
16
n
16
DG
16
C
A
17
n
17
DA
17
C
T
1
n
1
DT
1
D
C
2
n
2
DC
2
D
T
3
n
3
DT
3
D
G
4
n
4
DG
4
D
5IT
5
n
5
5IU
5
D
A
6
n
6
DA
6
D
C
7
n
7
DC
7
D
5IT
8
n
8
5IU
8
D
5IT
9
n
9
5IU
9
D
5IT
10
n
10
5IU
10
D
C
11
n
11
DC
11
D
C
12
n
12
DC
12
D
C
13
n
13
DC
13
D
T
14
n
14
DT
14
D
G
15
n
15
DG
15
D
A
16
n
16
DA
16
D
G
17
n
17
DG
17
D
n
1
18
A
ALA
19
n
2
ALA
19
A
TYR
20
n
3
TYR
20
A
VAL
21
n
4
VAL
21
A
GLU
22
n
5
GLU
22
A
ILE
23
n
6
ILE
23
A
ILE
24
n
7
ILE
24
A
GLU
25
n
8
GLU
25
A
GLN
26
n
9
GLN
26
A
PRO
27
n
10
PRO
27
A
LYS
28
n
11
LYS
28
A
GLN
29
n
12
GLN
29
A
ARG
30
n
13
ARG
30
A
GLY
31
n
14
GLY
31
A
MET
32
n
15
MET
32
A
ARG
33
n
16
ARG
33
A
PHE
34
n
17
PHE
34
A
ARG
35
n
18
ARG
35
A
TYR
36
n
19
TYR
36
A
LYS
37
n
20
LYS
37
A
CYS
38
n
21
CYS
38
A
GLU
39
n
22
GLU
39
A
GLY
40
n
23
GLY
40
A
ARG
41
n
24
ARG
41
A
SER
42
n
25
SER
42
A
ALA
43
n
26
ALA
43
A
GLY
44
n
27
GLY
44
A
SER
45
n
28
SER
45
A
ILE
46
n
29
ILE
46
A
PRO
47
n
30
PRO
47
A
GLY
48
n
31
GLY
48
A
GLU
49
n
32
GLU
49
A
ARG
50
n
33
ARG
50
A
SER
51
n
34
SER
51
A
THR
52
n
35
THR
52
A
ASP
53
n
36
ASP
53
A
THR
54
n
37
THR
54
A
THR
55
n
38
THR
55
A
LYS
56
n
39
LYS
56
A
THR
57
n
40
THR
57
A
HIS
58
n
41
HIS
58
A
PRO
59
n
42
PRO
59
A
THR
60
n
43
THR
60
A
ILE
61
n
44
ILE
61
A
LYS
62
n
45
LYS
62
A
ILE
63
n
46
ILE
63
A
ASN
64
n
47
ASN
64
A
GLY
65
n
48
GLY
65
A
TYR
66
n
49
TYR
66
A
THR
67
n
50
THR
67
A
GLY
68
n
51
GLY
68
A
PRO
69
n
52
PRO
69
A
GLY
70
n
53
GLY
70
A
THR
71
n
54
THR
71
A
VAL
72
n
55
VAL
72
A
ARG
73
n
56
ARG
73
A
ILE
74
n
57
ILE
74
A
SER
75
n
58
SER
75
A
LEU
76
n
59
LEU
76
A
VAL
77
n
60
VAL
77
A
THR
78
n
61
THR
78
A
LYS
79
n
62
LYS
79
A
ASP
80
n
63
ASP
80
A
PRO
81
n
64
PRO
81
A
PRO
82
n
65
PRO
82
A
HIS
83
n
66
HIS
83
A
ARG
84
n
67
ARG
84
A
PRO
85
n
68
PRO
85
A
HIS
86
n
69
HIS
86
A
PRO
87
n
70
PRO
87
A
HIS
88
n
71
HIS
88
A
GLU
89
n
72
GLU
89
A
LEU
90
n
73
LEU
90
A
VAL
91
n
74
VAL
91
A
GLY
92
n
75
GLY
92
A
LYS
93
n
76
LYS
93
A
ASP
94
n
77
ASP
94
A
CYS
95
n
78
CYS
95
A
ARG
96
n
79
ARG
96
A
ASP
97
n
80
ASP
97
A
GLY
98
n
81
GLY
98
A
TYR
99
n
82
TYR
99
A
TYR
100
n
83
TYR
100
A
GLU
101
n
84
GLU
101
A
ALA
102
n
85
ALA
102
A
ASP
103
n
86
ASP
103
A
LEU
104
n
87
LEU
104
A
CYS
105
n
88
CYS
105
A
PRO
106
n
89
PRO
106
A
ASP
107
n
90
ASP
107
A
ARG
108
n
91
ARG
108
A
SER
109
n
92
SER
109
A
ILE
110
n
93
ILE
110
A
HIS
111
n
94
HIS
111
A
SER
112
n
95
SER
112
A
PHE
113
n
96
PHE
113
A
GLN
114
n
97
GLN
114
A
ASN
115
n
98
ASN
115
A
LEU
116
n
99
LEU
116
A
GLY
117
n
100
GLY
117
A
ILE
118
n
101
ILE
118
A
GLN
119
n
102
GLN
119
A
CYS
120
n
103
CYS
120
A
VAL
121
n
104
VAL
121
A
LYS
122
n
105
LYS
122
A
LYS
123
n
106
LYS
123
A
ARG
124
n
107
ARG
124
A
ASP
125
n
108
ASP
125
A
LEU
126
n
109
LEU
126
A
GLU
127
n
110
GLU
127
A
GLN
128
n
111
GLN
128
A
ALA
129
n
112
ALA
129
A
ILE
130
n
113
ILE
130
A
SER
131
n
114
SER
131
A
GLN
132
n
115
GLN
132
A
ARG
133
n
116
ARG
133
A
ILE
134
n
117
ILE
134
A
GLN
135
n
118
GLN
135
A
THR
136
n
119
THR
136
A
ASN
137
n
120
ASN
137
A
ASN
138
n
121
ASN
138
A
ASN
139
n
122
ASN
139
A
PRO
140
n
123
PRO
140
A
PHE
141
n
124
PHE
141
A
HIS
142
n
125
HIS
142
A
VAL
143
n
126
VAL
143
A
PRO
144
n
127
PRO
144
A
ILE
145
n
128
ILE
145
A
GLU
146
n
129
GLU
146
A
GLU
147
n
130
GLU
147
A
GLN
148
n
131
GLN
148
A
ARG
149
n
132
ARG
149
A
GLY
150
n
133
GLY
150
A
ASP
151
n
134
ASP
151
A
TYR
152
n
135
TYR
152
A
ASP
153
n
136
ASP
153
A
LEU
154
n
137
LEU
154
A
ASN
155
n
138
ASN
155
A
ALA
156
n
139
ALA
156
A
VAL
157
n
140
VAL
157
A
ARG
158
n
141
ARG
158
A
LEU
159
n
142
LEU
159
A
CYS
160
n
143
CYS
160
A
PHE
161
n
144
PHE
161
A
GLN
162
n
145
GLN
162
A
VAL
163
n
146
VAL
163
A
THR
164
n
147
THR
164
A
VAL
165
n
148
VAL
165
A
ARG
166
n
149
ARG
166
A
ASP
167
n
150
ASP
167
A
PRO
168
n
151
PRO
168
A
ALA
169
n
152
ALA
169
A
GLY
170
n
153
GLY
170
A
ARG
171
n
154
ARG
171
A
PRO
172
n
155
PRO
172
A
LEU
173
n
156
LEU
173
A
LEU
174
n
157
LEU
174
A
LEU
175
n
158
LEU
175
A
THR
176
n
159
THR
176
A
PRO
177
n
160
PRO
177
A
VAL
178
n
161
VAL
178
A
LEU
179
n
162
LEU
179
A
SER
180
n
163
SER
180
A
HIS
181
n
164
HIS
181
A
PRO
182
n
165
PRO
182
A
ILE
183
n
166
ILE
183
A
PHE
184
n
167
PHE
184
A
ASP
185
n
168
ASP
185
A
ASN
186
n
169
ASN
186
A
ARG
187
n
170
ARG
187
A
ALA
188
n
171
ALA
188
A
PRO
189
n
172
PRO
189
A
ASN
190
n
173
ASN
190
A
THR
191
n
174
THR
191
A
ALA
192
n
175
ALA
192
A
GLU
193
n
176
GLU
193
A
LEU
194
n
177
LEU
194
A
LYS
195
n
178
LYS
195
A
ILE
196
n
179
ILE
196
A
CYS
197
n
180
CYS
197
A
ARG
198
n
181
ARG
198
A
VAL
199
n
182
VAL
199
A
ASN
200
n
183
ASN
200
A
ARG
201
n
184
ARG
201
A
ASN
202
n
185
ASN
202
A
SER
203
n
186
SER
203
A
GLY
204
n
187
GLY
204
A
SER
205
n
188
SER
205
A
CYS
206
n
189
CYS
206
A
LEU
207
n
190
LEU
207
A
GLY
208
n
191
GLY
208
A
GLY
209
n
192
GLY
209
A
ASP
210
n
193
ASP
210
A
GLU
211
n
194
GLU
211
A
ILE
212
n
195
ILE
212
A
PHE
213
n
196
PHE
213
A
LEU
214
n
197
LEU
214
A
LEU
215
n
198
LEU
215
A
CYS
216
n
199
CYS
216
A
ASP
217
n
200
ASP
217
A
LYS
218
n
201
LYS
218
A
VAL
219
n
202
VAL
219
A
GLN
220
n
203
GLN
220
A
LYS
221
n
204
LYS
221
A
GLU
222
n
205
GLU
222
A
ASP
223
n
206
ASP
223
A
ILE
224
n
207
ILE
224
A
GLU
225
n
208
GLU
225
A
VAL
226
n
209
VAL
226
A
TYR
227
n
210
TYR
227
A
PHE
228
n
211
PHE
228
A
THR
229
n
212
THR
229
A
GLY
230
n
213
GLY
230
A
PRO
231
n
214
PRO
231
A
GLY
232
n
215
GLY
232
A
TRP
233
n
216
TRP
233
A
GLU
234
n
217
GLU
234
A
ALA
235
n
218
ALA
235
A
ARG
236
n
219
ARG
236
A
GLY
237
n
220
GLY
237
A
SER
238
n
221
SER
238
A
PHE
239
n
222
PHE
239
A
SER
240
n
223
SER
240
A
GLN
241
n
224
GLN
241
A
ALA
242
n
225
ALA
242
A
ASP
243
n
226
ASP
243
A
VAL
244
n
227
VAL
244
A
HIS
245
n
228
HIS
245
A
ARG
246
n
229
ARG
246
A
GLN
247
n
230
GLN
247
A
VAL
248
n
231
VAL
248
A
ALA
249
n
232
ALA
249
A
ILE
250
n
233
ILE
250
A
VAL
251
n
234
VAL
251
A
PHE
252
n
235
PHE
252
A
ARG
253
n
236
ARG
253
A
THR
254
n
237
THR
254
A
PRO
255
n
238
PRO
255
A
PRO
256
n
239
PRO
256
A
TYR
257
n
240
TYR
257
A
ALA
258
n
241
ALA
258
A
ASP
259
n
242
ASP
259
A
PRO
260
n
243
PRO
260
A
SER
261
n
244
SER
261
A
LEU
262
n
245
LEU
262
A
GLN
263
n
246
GLN
263
A
ALA
264
n
247
ALA
264
A
PRO
265
n
248
PRO
265
A
VAL
266
n
249
VAL
266
A
ARG
267
n
250
ARG
267
A
VAL
268
n
251
VAL
268
A
SER
269
n
252
SER
269
A
MET
270
n
253
MET
270
A
GLN
271
n
254
GLN
271
A
LEU
272
n
255
LEU
272
A
ARG
273
n
256
ARG
273
A
ARG
274
n
257
ARG
274
A
PRO
275
n
258
PRO
275
A
SER
276
n
259
SER
276
A
ASP
277
n
260
ASP
277
A
ARG
278
n
261
ARG
278
A
GLU
279
n
262
GLU
279
A
LEU
280
n
263
LEU
280
A
SER
281
n
264
SER
281
A
GLU
282
n
265
GLU
282
A
PRO
283
n
266
PRO
283
A
MET
284
n
267
MET
284
A
GLU
285
n
268
GLU
285
A
PHE
286
n
269
PHE
286
A
GLN
287
n
270
GLN
287
A
TYR
288
n
271
TYR
288
A
LEU
289
n
272
LEU
289
A
PRO
290
n
273
PRO
290
A
ASP
291
n
274
ASP
291
A
n
1
38
B
GLY
339
n
2
GLY
39
B
PRO
340
n
3
PRO
40
B
TYR
341
n
4
TYR
41
B
LEU
342
n
5
LEU
42
B
GLN
343
n
6
GLN
43
B
ILE
344
n
7
ILE
44
B
LEU
345
n
8
LEU
45
B
GLU
346
n
9
GLU
46
B
GLN
347
n
10
GLN
47
B
PRO
348
n
11
PRO
48
B
LYS
349
n
12
LYS
49
B
GLN
350
n
13
GLN
50
B
ARG
351
n
14
ARG
51
B
GLY
352
n
15
GLY
52
B
PHE
353
n
16
PHE
53
B
ARG
354
n
17
ARG
54
B
PHE
355
n
18
PHE
55
B
ARG
356
n
19
ARG
56
B
TYR
357
n
20
TYR
57
B
VAL
358
n
21
VAL
58
B
CYS
359
n
22
CYS
59
B
GLU
360
n
23
GLU
60
B
GLY
361
n
24
GLY
61
B
PRO
362
n
25
PRO
62
B
SER
363
n
26
SER
63
B
HIS
364
n
27
HIS
64
B
GLY
365
n
28
GLY
65
B
GLY
366
n
29
GLY
66
B
LEU
367
n
30
LEU
67
B
PRO
368
n
31
PRO
68
B
GLY
369
n
32
GLY
69
B
ALA
370
n
33
ALA
70
B
SER
371
n
34
SER
71
B
SER
372
n
35
SER
72
B
GLU
373
n
36
GLU
73
B
LYS
374
n
37
LYS
74
B
ASN
375
n
38
ASN
75
B
LYS
376
n
39
LYS
76
B
LYS
377
n
40
LYS
77
B
SER
378
n
41
SER
78
B
TYR
379
n
42
TYR
79
B
PRO
380
n
43
PRO
80
B
GLN
381
n
44
GLN
81
B
VAL
382
n
45
VAL
82
B
LYS
383
n
46
LYS
83
B
ILE
384
n
47
ILE
84
B
CYS
385
n
48
CYS
85
B
ASN
386
n
49
ASN
86
B
TYR
387
n
50
TYR
87
B
VAL
388
n
51
VAL
88
B
GLY
389
n
52
GLY
89
B
PRO
390
n
53
PRO
90
B
ALA
391
n
54
ALA
91
B
LYS
392
n
55
LYS
92
B
VAL
393
n
56
VAL
93
B
ILE
394
n
57
ILE
94
B
VAL
395
n
58
VAL
95
B
GLN
396
n
59
GLN
96
B
LEU
397
n
60
LEU
97
B
VAL
398
n
61
VAL
98
B
THR
399
n
62
THR
99
B
ASN
400
n
63
ASN
100
B
GLY
401
n
64
GLY
101
B
LYS
402
n
65
LYS
102
B
ASN
403
n
66
ASN
103
B
ILE
404
n
67
ILE
104
B
HIS
405
n
68
HIS
105
B
LEU
406
n
69
LEU
106
B
HIS
407
n
70
HIS
107
B
ALA
408
n
71
ALA
108
B
HIS
409
n
72
HIS
109
B
SER
410
n
73
SER
110
B
LEU
411
n
74
LEU
111
B
VAL
412
n
75
VAL
112
B
GLY
413
n
76
GLY
113
B
LYS
414
n
77
LYS
114
B
HIS
415
n
78
HIS
115
B
CYS
416
n
79
CYS
116
B
GLU
417
n
80
GLU
117
B
ASP
418
n
81
ASP
118
B
GLY
419
n
82
GLY
119
B
VAL
420
n
83
VAL
120
B
CYS
421
n
84
CYS
121
B
THR
422
n
85
THR
122
B
VAL
423
n
86
VAL
123
B
THR
424
n
87
THR
124
B
ALA
425
n
88
ALA
125
B
GLY
426
n
89
GLY
126
B
PRO
427
n
90
PRO
127
B
LYS
428
n
91
LYS
128
B
ASP
429
n
92
ASP
129
B
MET
430
n
93
MET
130
B
VAL
431
n
94
VAL
131
B
VAL
432
n
95
VAL
132
B
GLY
433
n
96
GLY
133
B
PHE
434
n
97
PHE
134
B
ALA
435
n
98
ALA
135
B
ASN
436
n
99
ASN
136
B
LEU
437
n
100
LEU
137
B
GLY
438
n
101
GLY
138
B
ILE
439
n
102
ILE
139
B
LEU
440
n
103
LEU
140
B
HIS
441
n
104
HIS
141
B
VAL
442
n
105
VAL
142
B
THR
443
n
106
THR
143
B
LYS
444
n
107
LYS
144
B
LYS
445
n
108
LYS
145
B
LYS
446
n
109
LYS
146
B
VAL
447
n
110
VAL
147
B
PHE
448
n
111
PHE
148
B
GLU
449
n
112
GLU
149
B
THR
450
n
113
THR
150
B
LEU
451
n
114
LEU
151
B
GLU
452
n
115
GLU
152
B
ALA
453
n
116
ALA
153
B
ARG
454
n
117
ARG
154
B
MET
455
n
118
MET
155
B
THR
456
n
119
THR
156
B
GLU
457
n
120
GLU
157
B
ALA
458
n
121
ALA
158
B
CYS
459
n
122
CYS
159
B
ILE
460
n
123
ILE
160
B
ARG
461
n
124
ARG
161
B
GLY
462
n
125
GLY
162
B
TYR
463
n
126
TYR
163
B
ASN
464
n
127
ASN
164
B
PRO
465
n
128
PRO
165
B
GLY
466
n
129
GLY
166
B
LEU
467
n
130
LEU
167
B
LEU
468
n
131
LEU
168
B
VAL
469
n
132
VAL
169
B
HIS
470
n
133
HIS
170
B
SER
471
n
134
SER
171
B
ASP
472
n
135
ASP
172
B
LEU
473
n
136
LEU
173
B
ALA
474
n
137
ALA
174
B
TYR
475
n
138
TYR
175
B
LEU
476
n
139
LEU
176
B
GLN
477
n
140
GLN
177
B
ALA
478
n
141
ALA
178
B
GLU
479
n
142
GLU
179
B
GLY
480
n
143
GLY
180
B
GLY
481
n
144
GLY
181
B
GLY
482
n
145
GLY
182
B
ASP
483
n
146
ASP
183
B
ARG
484
n
147
ARG
184
B
GLN
485
n
148
GLN
185
B
LEU
486
n
149
LEU
186
B
THR
487
n
150
THR
187
B
ASP
488
n
151
ASP
188
B
ARG
489
n
152
ARG
189
B
GLU
490
n
153
GLU
190
B
LYS
491
n
154
LYS
191
B
GLU
492
n
155
GLU
192
B
ILE
493
n
156
ILE
193
B
ILE
494
n
157
ILE
194
B
ARG
495
n
158
ARG
195
B
GLN
496
n
159
GLN
196
B
ALA
497
n
160
ALA
197
B
ALA
498
n
161
ALA
198
B
VAL
499
n
162
VAL
199
B
GLN
500
n
163
GLN
200
B
GLN
501
n
164
GLN
201
B
THR
502
n
165
THR
202
B
LYS
503
n
166
LYS
203
B
GLU
504
n
167
GLU
204
B
MET
505
n
168
MET
205
B
ASP
506
n
169
ASP
206
B
LEU
507
n
170
LEU
207
B
SER
508
n
171
SER
208
B
VAL
509
n
172
VAL
209
B
VAL
510
n
173
VAL
210
B
ARG
511
n
174
ARG
211
B
LEU
512
n
175
LEU
212
B
MET
513
n
176
MET
213
B
PHE
514
n
177
PHE
214
B
THR
515
n
178
THR
215
B
ALA
516
n
179
ALA
216
B
PHE
517
n
180
PHE
217
B
LEU
518
n
181
LEU
218
B
PRO
519
n
182
PRO
219
B
ASP
520
n
183
ASP
220
B
SER
521
n
184
SER
221
B
THR
522
n
185
THR
222
B
GLY
523
n
186
GLY
223
B
SER
524
n
187
SER
224
B
PHE
525
n
188
PHE
225
B
THR
526
n
189
THR
226
B
ARG
527
n
190
ARG
227
B
ARG
528
n
191
ARG
228
B
LEU
529
n
192
LEU
229
B
GLU
530
n
193
GLU
230
B
PRO
531
n
194
PRO
231
B
VAL
532
n
195
VAL
232
B
VAL
533
n
196
VAL
233
B
SER
534
n
197
SER
234
B
ASP
535
n
198
ASP
235
B
ALA
536
n
199
ALA
236
B
ILE
537
n
200
ILE
237
B
TYR
538
n
201
TYR
238
B
ASP
539
n
202
ASP
239
B
SER
540
n
203
SER
240
B
LYS
541
n
204
LYS
241
B
ALA
542
n
205
ALA
242
B
PRO
543
n
206
PRO
243
B
ASN
544
n
207
ASN
244
B
ALA
545
n
208
ALA
245
B
SER
546
n
209
SER
246
B
ASN
547
n
210
ASN
247
B
LEU
548
n
211
LEU
248
B
LYS
549
n
212
LYS
249
B
ILE
550
n
213
ILE
250
B
VAL
551
n
214
VAL
251
B
ARG
552
n
215
ARG
252
B
MET
553
n
216
MET
253
B
ASP
554
n
217
ASP
254
B
ARG
555
n
218
ARG
255
B
THR
556
n
219
THR
256
B
ALA
557
n
220
ALA
257
B
GLY
558
n
221
GLY
258
B
CYS
559
n
222
CYS
259
B
VAL
560
n
223
VAL
260
B
THR
561
n
224
THR
261
B
GLY
562
n
225
GLY
262
B
GLY
563
n
226
GLY
263
B
GLU
564
n
227
GLU
264
B
GLU
565
n
228
GLU
265
B
ILE
566
n
229
ILE
266
B
TYR
567
n
230
TYR
267
B
LEU
568
n
231
LEU
268
B
LEU
569
n
232
LEU
269
B
CYS
570
n
233
CYS
270
B
ASP
571
n
234
ASP
271
B
LYS
572
n
235
LYS
272
B
VAL
573
n
236
VAL
273
B
GLN
574
n
237
GLN
274
B
LYS
575
n
238
LYS
275
B
ASP
576
n
239
ASP
276
B
ASP
577
n
240
ASP
277
B
ILE
578
n
241
ILE
278
B
GLN
579
n
242
GLN
279
B
ILE
580
n
243
ILE
280
B
ARG
581
n
244
ARG
281
B
PHE
582
n
245
PHE
282
B
TYR
583
n
246
TYR
283
B
GLU
584
n
247
GLU
284
B
GLU
585
n
248
GLU
285
B
GLU
586
n
249
GLU
286
B
GLU
587
n
250
GLU
287
B
ASN
588
n
251
ASN
288
B
GLY
589
n
252
GLY
289
B
GLY
590
n
253
GLY
290
B
VAL
591
n
254
VAL
291
B
TRP
592
n
255
TRP
292
B
GLU
593
n
256
GLU
293
B
GLY
594
n
257
GLY
294
B
PHE
595
n
258
PHE
295
B
GLY
596
n
259
GLY
296
B
ASP
597
n
260
ASP
297
B
PHE
598
n
261
PHE
298
B
SER
599
n
262
SER
299
B
PRO
600
n
263
PRO
300
B
THR
601
n
264
THR
301
B
ASP
602
n
265
ASP
302
B
VAL
603
n
266
VAL
303
B
HIS
604
n
267
HIS
304
B
ARG
605
n
268
ARG
305
B
GLN
606
n
269
GLN
306
B
PHE
607
n
270
PHE
307
B
ALA
608
n
271
ALA
308
B
ILE
609
n
272
ILE
309
B
VAL
610
n
273
VAL
310
B
PHE
611
n
274
PHE
311
B
LYS
612
n
275
LYS
312
B
THR
613
n
276
THR
313
B
PRO
614
n
277
PRO
314
B
LYS
615
n
278
LYS
315
B
TYR
616
n
279
TYR
316
B
LYS
617
n
280
LYS
317
B
ASP
618
n
281
ASP
318
B
VAL
619
n
282
VAL
319
B
ASN
620
n
283
ASN
320
B
ILE
621
n
284
ILE
321
B
THR
622
n
285
THR
322
B
LYS
623
n
286
LYS
323
B
PRO
624
n
287
PRO
324
B
ALA
625
n
288
ALA
325
B
SER
626
n
289
SER
326
B
VAL
627
n
290
VAL
327
B
PHE
628
n
291
PHE
328
B
VAL
629
n
292
VAL
329
B
GLN
630
n
293
GLN
330
B
LEU
631
n
294
LEU
331
B
ARG
632
n
295
ARG
332
B
ARG
633
n
296
ARG
333
B
LYS
634
n
297
LYS
334
B
SER
635
n
298
SER
335
B
ASP
636
n
299
ASP
336
B
LEU
637
n
300
LEU
337
B
GLU
638
n
301
GLU
338
B
THR
639
n
302
THR
339
B
SER
640
n
303
SER
340
B
GLU
641
n
304
GLU
341
B
PRO
642
n
305
PRO
342
B
LYS
643
n
306
LYS
343
B
PRO
644
n
307
PRO
344
B
PHE
645
n
308
PHE
345
B
LEU
646
n
309
LEU
346
B
TYR
647
n
310
TYR
347
B
TYR
648
n
311
TYR
348
B
PRO
649
n
312
PRO
349
B
GLU
650
n
313
GLU
350
B
author_defined_assembly
4
tetrameric
D
5IU
5
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
B
5IU
5
DU
D
5IU
8
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
B
5IU
8
DU
D
5IU
9
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
B
5IU
9
DU
D
5IU
10
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
B
5IU
10
DU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
22
C
N
GLU
5
A
O
LYS
62
C
O
LYS
45
A
N
ILE
61
C
N
ILE
44
A
O
HIS
111
C
O
HIS
94
A
O
ILE
183
C
O
ILE
166
A
N
VAL
157
C
N
VAL
140
A
O
THR
164
C
O
THR
147
A
N
THR
71
C
N
THR
54
A
N
VAL
72
C
N
VAL
55
A
O
ALA
102
C
O
ALA
85
A
O
TYR
99
C
O
TYR
82
A
N
ARG
96
C
N
ARG
79
A
O
ILE
183
C
O
ILE
166
A
N
VAL
157
C
N
VAL
140
A
N
VAL
165
C
N
VAL
148
A
O
LEU
173
C
O
LEU
156
A
N
GLU
89
C
N
GLU
72
A
O
GLN
119
C
O
GLN
102
A
N
ARG
198
C
N
ARG
181
A
O
LEU
215
C
O
LEU
198
A
N
ILE
212
C
N
ILE
195
A
O
PHE
252
C
O
PHE
235
A
O
ALA
249
C
O
ALA
232
A
N
HIS
245
C
N
HIS
228
A
N
GLY
204
C
N
GLY
187
A
O
LEU
289
C
O
LEU
272
A
O
PHE
286
C
O
PHE
269
A
N
VAL
268
C
N
VAL
251
A
O
GLN
271
C
O
GLN
254
A
N
TYR
227
C
N
TYR
210
A
N
GLY
230
C
N
GLY
213
A
O
TRP
233
C
O
TRP
216
A
N
GLY
204
C
N
GLY
187
A
O
LEU
289
C
O
LEU
272
A
O
PHE
286
C
O
PHE
269
A
N
VAL
268
C
N
VAL
251
A
N
ARG
274
C
N
ARG
257
A
O
GLU
279
C
O
GLU
262
B
N
GLN
43
D
N
GLN
6
B
O
LYS
83
D
O
LYS
46
B
N
VAL
82
D
N
VAL
45
B
O
VAL
132
D
O
VAL
95
B
N
ARG
56
D
N
ARG
19
B
O
HIS
141
D
O
HIS
104
B
O
LEU
140
D
O
LEU
103
B
N
SER
110
D
N
SER
73
B
O
ARG
227
D
O
ARG
190
B
N
LEU
218
D
N
LEU
181
B
O
PHE
217
D
O
PHE
180
B
N
LYS
92
D
N
LYS
55
B
N
VAL
95
D
N
VAL
58
B
O
CYS
121
D
O
CYS
84
B
O
VAL
120
D
O
VAL
83
B
N
GLU
117
D
N
GLU
80
B
O
ARG
227
D
O
ARG
190
B
N
LEU
218
D
N
LEU
181
B
N
VAL
210
D
N
VAL
173
B
O
ILE
237
D
O
ILE
200
B
N
ARG
252
D
N
ARG
215
B
O
LEU
269
D
O
LEU
232
B
N
LEU
268
D
N
LEU
231
B
O
ILE
309
D
O
ILE
272
B
O
ALA
308
D
O
ALA
271
B
N
HIS
304
D
N
HIS
267
B
N
GLY
258
D
N
GLY
221
B
O
LEU
346
D
O
LEU
309
B
O
LYS
343
D
O
LYS
306
B
N
VAL
329
D
N
VAL
292
B
O
PHE
328
D
O
PHE
291
B
N
TYR
283
D
N
TYR
246
B
N
PHE
282
D
N
PHE
245
B
O
GLY
294
D
O
GLY
257
1
A
MET
18
C
MET
1
1
Y
1
B
MET
38
D
MET
1
1
Y
1
2.02
0.30
108.30
110.32
D
D
D
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
12.96
1.50
119.30
132.26
A
A
A
C
N
CA
ASP
PRO
PRO
80
81
81
Y
1
-10.14
1.50
119.30
109.16
A
A
A
C
N
CA
PRO
PRO
PRO
81
82
82
Y
1
D
D
O4
O4
DT
DT
1
1
1.77
1_555
6_555
1
A
GLU
25
-163.27
93.17
1
A
ALA
43
-72.80
-165.73
1
A
ILE
46
-50.90
109.57
1
A
GLU
49
-166.82
-24.08
1
A
THR
67
-171.46
117.87
1
A
PRO
81
-13.65
-62.24
1
A
HIS
83
-59.69
84.95
1
A
ASN
115
-151.25
50.16
1
A
GLN
135
-48.12
-16.24
1
A
ASN
139
-150.53
76.58
1
A
GLN
148
-76.69
25.33
1
A
ASP
151
-37.17
148.07
1
A
VAL
165
-108.19
-147.30
1
A
ALA
169
-65.43
1.82
1
A
ASP
223
-148.43
56.19
1
A
PHE
239
179.80
163.71
1
A
ARG
246
39.98
47.29
1
A
GLN
247
61.69
-7.93
1
A
SER
261
-141.94
55.76
1
A
ALA
264
176.67
143.93
1
A
ARG
278
39.24
34.84
1
B
GLU
46
-155.10
84.18
1
B
SER
63
39.61
91.89
1
B
LEU
67
-24.05
114.72
1
B
SER
72
-109.86
40.58
1
B
GLU
73
-32.91
-35.97
1
B
LYS
74
-134.83
-154.51
1
B
ASN
75
-79.15
35.83
1
B
LYS
77
20.52
72.48
1
B
SER
78
-66.19
-169.28
1
B
TYR
79
174.95
148.51
1
B
TYR
87
-30.74
87.84
1
B
LYS
114
18.33
-153.51
1
B
PRO
127
-40.10
-168.52
1
B
PHE
134
-150.51
81.26
1
B
ASN
136
57.02
107.32
1
B
LEU
137
-179.10
90.27
1
B
GLU
149
-58.17
-71.11
1
B
TYR
163
-38.02
-15.72
1
B
PRO
165
-58.81
-158.97
1
B
HIS
170
165.33
124.61
1
B
ASP
172
-59.96
11.68
1
B
TYR
175
-69.71
60.29
1
B
LEU
176
-159.79
2.73
1
B
GLN
177
-42.35
161.22
1
B
ALA
178
-25.82
109.79
1
B
GLU
179
-162.89
105.77
1
B
ASP
220
-100.34
-145.75
1
B
PHE
225
-55.12
77.35
1
B
GLU
230
-39.37
119.41
1
B
LYS
241
-152.77
-28.25
1
B
PRO
243
-31.82
-21.17
1
B
ALA
245
-165.17
7.70
1
B
LYS
275
-43.30
-12.87
1
B
GLU
286
-74.47
-169.41
1
B
ASN
288
-78.50
43.15
1
B
PHE
298
-176.38
146.68
1
B
ARG
305
35.18
42.53
1
B
GLN
306
61.35
-2.60
0.284
0.25
2.7
20.0
1525
29985
87.1
RANDOM
1
Isotropic
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 1VKX
Engh & Huber
2.7
20.0
23
5344
0
691
4630
1.33
0.007
2.7
30.0
1LEI
33470
0
1
0.064
1
13.8
7.6
98
0.31
2.7
2.8
2.5
89
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
The kB DNA sequence from the HLV-LTR functions as an allosteric regulator of HIV transcription
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
LYS
122
C
LYS
105
HELX_P
A
ARG
124
C
ARG
107
5
1
3
A
ASP
125
C
ASP
108
HELX_P
A
GLN
135
C
GLN
118
1
2
11
A
PRO
144
C
PRO
127
HELX_P
A
GLN
148
C
GLN
131
5
3
5
A
GLN
220
C
GLN
203
HELX_P
A
ILE
224
C
ILE
207
5
4
5
A
SER
240
C
SER
223
HELX_P
A
ALA
242
C
ALA
225
5
5
3
B
LYS
145
D
LYS
108
HELX_P
B
GLU
157
D
GLU
120
1
6
13
B
HIS
170
D
HIS
133
HELX_P
B
ALA
174
D
ALA
137
5
7
5
B
ARG
189
D
ARG
152
HELX_P
B
LYS
203
D
LYS
166
1
8
15
B
SER
299
D
SER
262
HELX_P
B
THR
301
D
THR
264
5
9
3
disulf
2.043
B
CYS
116
D
SG
CYS
79
1_555
B
CYS
121
D
SG
CYS
84
1_555
covale
1.600
both
D
DG
4
B
O3'
DG
4
1_555
D
5IU
5
B
P
5IU
5
1_555
covale
1.596
both
D
5IU
5
B
O3'
5IU
5
1_555
D
DA
6
B
P
DA
6
1_555
covale
1.615
both
D
DC
7
B
O3'
DC
7
1_555
D
5IU
8
B
P
5IU
8
1_555
covale
1.606
both
D
5IU
8
B
O3'
5IU
8
1_555
D
5IU
9
B
P
5IU
9
1_555
covale
1.618
both
D
5IU
9
B
O3'
5IU
9
1_555
D
5IU
10
B
P
5IU
10
1_555
covale
1.603
both
D
5IU
10
B
O3'
5IU
10
1_555
D
DC
11
B
P
DC
11
1_555
hydrog
WATSON-CRICK
C
DC
1
A
N3
DC
1
1_555
D
DG
17
B
N1
DG
17
1_555
hydrog
WATSON-CRICK
C
DC
1
A
N4
DC
1
1_555
D
DG
17
B
O6
DG
17
1_555
hydrog
WATSON-CRICK
C
DC
1
A
O2
DC
1
1_555
D
DG
17
B
N2
DG
17
1_555
hydrog
WATSON-CRICK
C
DT
2
A
N3
DT
2
1_555
D
DA
16
B
N1
DA
16
1_555
hydrog
WATSON-CRICK
C
DT
2
A
O4
DT
2
1_555
D
DA
16
B
N6
DA
16
1_555
hydrog
WATSON-CRICK
C
DC
3
A
N3
DC
3
1_555
D
DG
15
B
N1
DG
15
1_555
hydrog
WATSON-CRICK
C
DC
3
A
N4
DC
3
1_555
D
DG
15
B
O6
DG
15
1_555
hydrog
WATSON-CRICK
C
DC
3
A
O2
DC
3
1_555
D
DG
15
B
N2
DG
15
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N1
DA
4
1_555
D
DT
14
B
N3
DT
14
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N6
DA
4
1_555
D
DT
14
B
O4
DT
14
1_555
hydrog
WATSON-CRICK
C
DG
5
A
N1
DG
5
1_555
D
DC
13
B
N3
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
5
A
N2
DG
5
1_555
D
DC
13
B
O2
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
5
A
O6
DG
5
1_555
D
DC
13
B
N4
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
6
A
N1
DG
6
1_555
D
DC
12
B
N3
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
6
A
N2
DG
6
1_555
D
DC
12
B
O2
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
6
A
O6
DG
6
1_555
D
DC
12
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
7
A
N1
DG
7
1_555
D
DC
11
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
7
A
N2
DG
7
1_555
D
DC
11
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
7
A
O6
DG
7
1_555
D
DC
11
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
C
DA
8
A
N1
DA
8
1_555
D
5IU
10
B
N3
5IU
10
1_555
hydrog
WATSON-CRICK
C
DA
8
A
N6
DA
8
1_555
D
5IU
10
B
O4
5IU
10
1_555
hydrog
WATSON-CRICK
C
DA
9
A
N1
DA
9
1_555
D
5IU
9
B
N3
5IU
9
1_555
hydrog
WATSON-CRICK
C
DA
9
A
N6
DA
9
1_555
D
5IU
9
B
O4
5IU
9
1_555
hydrog
WATSON-CRICK
C
DA
10
A
N1
DA
10
1_555
D
5IU
8
B
N3
5IU
8
1_555
hydrog
WATSON-CRICK
C
DA
10
A
N6
DA
10
1_555
D
5IU
8
B
O4
5IU
8
1_555
hydrog
WATSON-CRICK
C
DG
11
A
N1
DG
11
1_555
D
DC
7
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
11
A
N2
DG
11
1_555
D
DC
7
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
11
A
O6
DG
11
1_555
D
DC
7
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
C
DT
12
A
N3
DT
12
1_555
D
DA
6
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
C
DT
12
A
O4
DT
12
1_555
D
DA
6
B
N6
DA
6
1_555
hydrog
TYPE_8_PAIR
C
DA
13
A
N1
DA
13
1_555
D
DG
4
B
N1
DG
4
1_555
hydrog
TYPE_8_PAIR
C
DA
13
A
N6
DA
13
1_555
D
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DA
13
A
N1
DA
13
1_555
D
5IU
5
B
N3
5IU
5
1_555
hydrog
WATSON-CRICK
C
DA
13
A
N6
DA
13
1_555
D
5IU
5
B
O4
5IU
5
1_555
hydrog
WATSON-CRICK
C
DC
14
A
N3
DC
14
1_555
D
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
14
A
N4
DC
14
1_555
D
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
14
A
O2
DC
14
1_555
D
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DA
15
A
N1
DA
15
1_555
D
DT
3
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
C
DA
15
A
N6
DA
15
1_555
D
DT
3
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
C
DG
16
A
N1
DG
16
1_555
D
DC
2
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
16
A
N2
DG
16
1_555
D
DC
2
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
16
A
O6
DG
16
1_555
D
DC
2
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
C
DA
17
A
N1
DA
17
1_555
D
DT
1
B
N3
DT
1
1_555
hydrog
WATSON-CRICK
C
DA
17
A
N6
DA
17
1_555
D
DT
1
B
O4
DT
1
1_555
TRANSCRIPTION/DNA
transcription factor, NF-kB-DNA complex, TRANSCRIPTION-DNA COMPLEX
TF65_MOUSE
UNP
3
20
Q04207
YVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGY
YEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPVL
SHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYAD
PSLQAPVRVSMQLRRPSDRELSEPMEFQYLPD
KBF1_MOUSE
UNP
4
39
P25799
GPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKHCED
GVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQAA
VQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDI
QIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPE
1LEI
PDB
1
1LEI
1LEI
PDB
2
1LEI
20
291
1LEI
20
291
Q04207
A
1
3
274
39
350
1LEI
39
350
P25799
B
2
2
313
1
17
1LEI
1
17
1LEI
C
3
1
17
1
17
1LEI
1
17
1LEI
D
4
1
17
1
cloning artifact
MET
18
1LEI
A
Q04207
UNP
1
1
cloning artifact
ALA
19
1LEI
A
Q04207
UNP
2
2
initiating methionine
MET
38
1LEI
B
P25799
UNP
1
3
5
3
2
4
5
4
3
3
5
3
4
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
20
C
TYR
3
A
GLU
25
C
GLU
8
A
THR
60
C
THR
43
A
ASN
64
C
ASN
47
A
ILE
110
C
ILE
93
A
SER
112
C
SER
95
A
VAL
178
C
VAL
161
A
PHE
184
C
PHE
167
A
ALA
156
C
ALA
139
A
ARG
166
C
ARG
149
A
THR
71
C
THR
54
A
VAL
77
C
VAL
60
A
TYR
99
C
TYR
82
A
ASP
103
C
ASP
86
A
CYS
95
C
CYS
78
A
ARG
96
C
ARG
79
A
VAL
178
C
VAL
161
A
PHE
184
C
PHE
167
A
ALA
156
C
ALA
139
A
ARG
166
C
ARG
149
A
PRO
172
C
PRO
155
A
LEU
174
C
LEU
157
A
GLU
89
C
GLU
72
A
VAL
91
C
VAL
74
A
GLY
117
C
GLY
100
A
GLN
119
C
GLN
102
A
ILE
196
C
ILE
179
A
VAL
199
C
VAL
182
A
GLU
211
C
GLU
194
A
CYS
216
C
CYS
199
A
ALA
249
C
ALA
232
A
ARG
253
C
ARG
236
A
VAL
244
C
VAL
227
A
HIS
245
C
HIS
228
A
SER
203
C
SER
186
A
SER
205
C
SER
188
A
MET
284
C
MET
267
A
LEU
289
C
LEU
272
A
VAL
266
C
VAL
249
A
ARG
274
C
ARG
257
A
GLU
225
C
GLU
208
A
GLY
230
C
GLY
213
A
TRP
233
C
TRP
216
A
ARG
236
C
ARG
219
A
SER
203
C
SER
186
A
SER
205
C
SER
188
A
MET
284
C
MET
267
A
LEU
289
C
LEU
272
A
VAL
266
C
VAL
249
A
ARG
274
C
ARG
257
A
GLU
279
C
GLU
262
A
LEU
280
C
LEU
263
B
LEU
42
D
LEU
5
B
ILE
44
D
ILE
7
B
GLN
81
D
GLN
44
B
ILE
84
D
ILE
47
B
VAL
131
D
VAL
94
B
GLY
133
D
GLY
96
B
ARG
56
D
ARG
19
B
TYR
57
D
TYR
20
B
ILE
139
D
ILE
102
B
HIS
141
D
HIS
104
B
SER
110
D
SER
73
B
LEU
111
D
LEU
74
B
ARG
227
D
ARG
190
B
VAL
233
D
VAL
196
B
VAL
209
D
VAL
172
B
LEU
218
D
LEU
181
B
LYS
92
D
LYS
55
B
VAL
98
D
VAL
61
B
VAL
120
D
VAL
83
B
THR
124
D
THR
87
B
CYS
116
D
CYS
79
B
GLU
117
D
GLU
80
B
ARG
227
D
ARG
190
B
VAL
233
D
VAL
196
B
VAL
209
D
VAL
172
B
LEU
218
D
LEU
181
B
ILE
237
D
ILE
200
B
TYR
238
D
TYR
201
B
ILE
250
D
ILE
213
B
MET
253
D
MET
216
B
GLU
265
D
GLU
228
B
CYS
270
D
CYS
233
B
ALA
308
D
ALA
271
B
LYS
312
D
LYS
275
B
VAL
303
D
VAL
266
B
HIS
304
D
HIS
267
B
ALA
257
D
ALA
220
B
CYS
259
D
CYS
222
B
LYS
343
D
LYS
306
B
TYR
348
D
TYR
311
B
ALA
325
D
ALA
288
B
ARG
332
D
ARG
295
B
GLN
279
D
GLN
242
B
GLU
284
D
GLU
247
B
TRP
292
D
TRP
255
B
PHE
295
D
PHE
258
21
C 2 2 2