1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Urbach, A.R.
Love, J.J.
Ross, S.A.
Dervan, P.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C41 H56 N17 O8 1
914.992
IMIDAZOLE-PYRROLE-BETA ALANINE-IMIDAZOLE-BETA ALANINE-IMIDAZOLE-PYRROLE-BETA ALANINE-DIMETHYLAMINO PROPYLAMIDE
non-polymer
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
320
55
71
10.1016/S0022-2836(02)00430-8
12079334
Structure of a beta-alanine-linked polyamide bound to a full helical turn of purine tract DNA in the 1:1 motif.
2002
10.2210/pdb1lej/pdb
pdb_00001lej
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
4018.652
5'-D(*CP*CP*AP*AP*AP*GP*AP*GP*AP*AP*GP*CP*G)-3'
1
syn
polymer
3924.544
5'-D(*CP*GP*CP*TP*TP*CP*TP*CP*TP*TP*TP*GP*G)-3'
1
syn
polymer
914.992
IMIDAZOLE-PYRROLE-BETA ALANINE-IMIDAZOLE-BETA ALANINE-IMIDAZOLE-PYRROLE-BETA ALANINE-DIMETHYLAMINO PROPYLAMIDE
1
syn
non-polymer
no
no
(DC)(DC)(DA)(DA)(DA)(DG)(DA)(DG)(DA)(DA)(DG)(DC)(DG)
CCAAAGAGAAGCG
A
polydeoxyribonucleotide
no
no
(DC)(DG)(DC)(DT)(DT)(DC)(DT)(DC)(DT)(DT)(DT)(DG)(DG)
CGCTTCTCTTTGG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
15.407
1
19
A
1
B
26
-1.723
A_DC1:DG26_B
1
-10.475
0.355
-0.074
-0.168
15.972
1
19
A
2
B
25
0.329
A_DC2:DG25_B
2
-15.351
0.263
-0.368
-0.144
1.392
1
20
A
3
B
24
2.377
A_DA3:DT24_B
3
-14.615
0.259
-0.477
-0.145
10.783
1
20
A
4
B
23
-4.341
A_DA4:DT23_B
4
-18.272
0.135
-0.167
-0.132
8.052
1
20
A
5
B
22
-3.614
A_DA5:DT22_B
5
-15.960
0.269
0.167
-0.053
-1.920
1
19
A
6
B
21
1.716
A_DG6:DC21_B
6
-18.542
-0.262
0.010
-0.198
-1.601
1
20
A
7
B
20
-0.846
A_DA7:DT20_B
7
-15.732
0.308
-0.002
-0.118
-4.802
1
19
A
8
B
19
0.701
A_DG8:DC19_B
8
-19.007
-0.145
-0.061
-0.186
-16.958
1
20
A
9
B
18
0.520
A_DA9:DT18_B
9
-18.652
0.394
-0.270
-0.054
-12.937
1
20
A
10
B
17
-2.503
A_DA10:DT17_B
10
-15.648
0.347
-0.347
-0.102
-11.424
1
19
A
11
B
16
1.325
A_DG11:DC16_B
11
-6.596
-0.003
0.064
-0.103
-2.689
1
19
A
12
B
15
0.039
A_DC12:DG15_B
12
-7.014
0.466
0.191
-0.215
-25.372
1
19
A
13
B
14
0.188
A_DG13:DC14_B
13
-24.829
-0.451
-0.278
-0.155
3.314
37.092
A
A
1
2
2.621
B
B
26
25
3.191
1.654
0.835
0.491
AA_DC1DC2:DG25DG26_BB
1
8.324
-13.194
36.141
0.548
-0.190
3.537
40.837
A
A
2
3
20.194
B
B
25
24
3.526
13.822
-1.001
0.436
AA_DC2DA3:DT24DG25_BB
2
-3.036
4.435
38.405
-1.073
1.061
2.958
31.452
A
A
3
4
7.862
B
B
24
23
2.972
4.247
-0.124
0.072
AA_DA3DA4:DT23DT24_BB
3
-2.008
3.717
31.108
-0.591
-0.115
3.127
42.863
A
A
4
5
1.146
B
B
23
22
3.099
0.837
-0.405
0.242
AA_DA4DA5:DT22DT23_BB
4
-4.240
5.811
42.655
0.252
0.151
3.248
38.577
A
A
5
6
5.033
B
B
22
21
3.323
3.321
0.138
-0.732
AA_DA5DG6:DC21DT22_BB
5
-0.582
0.881
38.435
-1.520
-0.282
3.048
36.000
A
A
6
7
6.705
B
B
21
20
3.090
4.135
-0.391
-0.260
AA_DG6DA7:DT20DC21_BB
6
-0.536
0.868
35.766
-0.975
0.561
3.222
34.622
A
A
7
8
6.109
B
B
20
19
3.244
3.629
0.435
-0.163
AA_DA7DG8:DC19DT20_BB
7
1.069
-1.800
34.421
-0.827
-0.568
3.436
45.538
A
A
8
9
2.929
B
B
19
18
3.370
2.265
-0.722
0.598
AA_DG8DA9:DT18DC19_BB
8
-3.295
4.261
45.371
0.566
0.631
3.069
39.629
A
A
9
10
-1.026
B
B
18
17
3.094
-0.695
-0.263
-0.024
AA_DA9DA10:DT17DT18_BB
9
2.764
-4.080
39.530
0.041
0.693
3.303
30.276
A
A
10
11
-5.632
B
B
17
16
3.213
-2.937
0.703
-1.087
AA_DA10DG11:DC16DT17_BB
10
0.072
-0.138
30.136
-1.489
-1.332
3.062
37.088
A
A
11
12
1.486
B
B
16
15
3.063
0.945
-0.745
-0.481
AA_DG11DC12:DG15DC16_BB
11
-0.643
1.011
37.071
-0.875
1.091
3.489
39.830
A
A
12
13
20.152
B
B
15
14
3.568
13.340
1.086
-0.116
AA_DC12DG13:DC14DG15_BB
12
9.940
-15.017
36.319
-1.920
-0.290
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-05-08
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2002-04-09
REL
REL
P11
IMIDAZOLE-PYRROLE-BETA ALANINE-IMIDAZOLE-BETA ALANINE-IMIDAZOLE-PYRROLE-BETA ALANINE-DIMETHYLAMINO PROPYLAMIDE
This sequence was designed and synthesized for this study.
sample
This sequence was designed and synthesized for this study.
sample
This structure was determined using standard 2D homonuclear techniques.
structures with the least restraint violations
40
11
2D NOESY
10 Millimolar
7.0
ambient
298
K
The structure calculations used 548 distance restraints. 508 were NOE-derived, and 40 were for Watson-Crick hydrogen bonds.
restrained molecular dynamics/simulated annealing, matrix relaxation/NOE-derived distance restraints.
1
fewest violations
3.67 millimolar polyamide-DNA complex, 10 millimolar sodium phosphate, pH 7.0, 90% H2O, 10% D2O
90% H2O/10% D2O
Varian Associates, Inc.
collection
VNMR
6.1 B
Delalgio, grzesiek, Vuister, Zhu, Pfeifer, & Bax
processing
NMRPipe
1
Johnson, & Blevins
data analysis
NMRView
4.1.2
Borgias, & James
iterative matrix relaxation
MARDIGRAS
3.2
Kollman, Case, Merz, Cheatham, Simmerling, Darden, Pearlman, Caldwell, Ross, Ferguson, Seibel, Singh, & Weiner
structure solution
Amber
6.0
Kollman, Case, Merz, Cheatham, Simmerling, Darden, Pearlman, Caldwell, Ross, Ferguson, Seibel, Singh, & Weiner
refinement
SANDER MODULE OF AMBER 6.0 PACKAGE (2000)
600
Varian
INOVA
P11
27
3
P11
P11
27
A
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
A
3
n
3
DA
3
A
A
4
n
4
DA
4
A
A
5
n
5
DA
5
A
G
6
n
6
DG
6
A
A
7
n
7
DA
7
A
G
8
n
8
DG
8
A
A
9
n
9
DA
9
A
A
10
n
10
DA
10
A
G
11
n
11
DG
11
A
C
12
n
12
DC
12
A
G
13
n
13
DG
13
A
C
14
n
1
DC
14
B
G
15
n
2
DG
15
B
C
16
n
3
DC
16
B
T
17
n
4
DT
17
B
T
18
n
5
DT
18
B
C
19
n
6
DC
19
B
T
20
n
7
DT
20
B
C
21
n
8
DC
21
B
T
22
n
9
DT
22
B
T
23
n
10
DT
23
B
T
24
n
11
DT
24
B
G
25
n
12
DG
25
B
G
26
n
13
DG
26
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
2
A
A
HO5'
OP1
DC
DC
1
2
1.32
2
B
B
HO5'
OP1
DC
DG
14
15
1.35
3
B
B
HO5'
OP1
DC
DG
14
15
1.34
4
A
A
HO5'
OP1
DC
DC
1
2
1.35
5
B
B
HO5'
OP1
DC
DG
14
15
1.34
7
A
A
HO5'
OP2
DC
DC
1
2
1.37
8
A
B
OP1
HO3'
DA
DG
4
26
1.32
9
B
B
HO5'
OP2
DC
DG
14
15
1.35
10
A
A
HO5'
OP1
DC
DC
1
2
1.36
1
A
DG
6
0.075
SIDE CHAIN
1
A
DA
9
0.077
SIDE CHAIN
1
B
DT
17
0.080
SIDE CHAIN
1
B
DT
18
0.068
SIDE CHAIN
2
A
DG
6
0.075
SIDE CHAIN
2
A
DA
9
0.056
SIDE CHAIN
2
A
DG
11
0.091
SIDE CHAIN
2
B
DC
16
0.061
SIDE CHAIN
2
B
DT
20
0.086
SIDE CHAIN
2
B
DT
22
0.082
SIDE CHAIN
2
B
DT
23
0.072
SIDE CHAIN
2
B
DG
26
0.072
SIDE CHAIN
3
A
DA
7
0.062
SIDE CHAIN
3
B
DT
17
0.101
SIDE CHAIN
3
B
DT
22
0.067
SIDE CHAIN
4
A
DA
3
0.054
SIDE CHAIN
4
A
DG
11
0.067
SIDE CHAIN
4
A
DC
12
0.071
SIDE CHAIN
4
B
DC
16
0.117
SIDE CHAIN
4
B
DT
18
0.068
SIDE CHAIN
4
B
DT
20
0.101
SIDE CHAIN
4
B
DT
22
0.082
SIDE CHAIN
4
B
DG
26
0.076
SIDE CHAIN
5
A
DA
4
0.057
SIDE CHAIN
5
B
DT
22
0.111
SIDE CHAIN
6
A
DG
6
0.087
SIDE CHAIN
6
A
DA
7
0.071
SIDE CHAIN
6
A
DA
9
0.059
SIDE CHAIN
6
B
DT
22
0.071
SIDE CHAIN
6
B
DT
24
0.074
SIDE CHAIN
7
A
DA
9
0.129
SIDE CHAIN
7
B
DC
14
0.074
SIDE CHAIN
7
B
DT
17
0.084
SIDE CHAIN
7
B
DT
20
0.103
SIDE CHAIN
7
B
DT
22
0.078
SIDE CHAIN
7
B
DG
25
0.060
SIDE CHAIN
8
A
DA
3
0.087
SIDE CHAIN
8
A
DC
12
0.083
SIDE CHAIN
8
B
DC
14
0.078
SIDE CHAIN
8
B
DC
16
0.122
SIDE CHAIN
8
B
DT
22
0.114
SIDE CHAIN
8
B
DG
26
0.053
SIDE CHAIN
9
A
DC
2
0.063
SIDE CHAIN
9
A
DG
6
0.105
SIDE CHAIN
9
A
DG
11
0.056
SIDE CHAIN
9
A
DC
12
0.078
SIDE CHAIN
9
A
DG
13
0.053
SIDE CHAIN
9
B
DC
16
0.071
SIDE CHAIN
9
B
DT
18
0.075
SIDE CHAIN
9
B
DT
20
0.109
SIDE CHAIN
9
B
DT
22
0.091
SIDE CHAIN
9
B
DG
26
0.072
SIDE CHAIN
10
A
DA
3
0.052
SIDE CHAIN
10
A
DG
6
0.084
SIDE CHAIN
10
A
DA
7
0.056
SIDE CHAIN
10
B
DT
18
0.084
SIDE CHAIN
10
B
DT
20
0.081
SIDE CHAIN
10
B
DT
22
0.077
SIDE CHAIN
10
B
DG
25
0.096
SIDE CHAIN
11
A
DG
6
0.102
SIDE CHAIN
11
A
DC
12
0.089
SIDE CHAIN
11
A
DG
13
0.059
SIDE CHAIN
11
B
DC
16
0.069
SIDE CHAIN
11
B
DT
17
0.063
SIDE CHAIN
11
B
DT
18
0.068
SIDE CHAIN
11
B
DT
20
0.104
SIDE CHAIN
11
B
DG
26
0.056
SIDE CHAIN
1
2.42
0.30
108.30
110.72
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
-4.22
0.70
121.90
117.68
A
A
A
N3
C2
O2
DC
DC
DC
2
2
2
N
1
3.30
0.50
117.70
121.00
A
A
A
C5
C6
N1
DA
DA
DA
3
3
3
N
1
-4.37
0.60
118.60
114.23
A
A
A
N1
C6
N6
DA
DA
DA
3
3
3
N
1
2.40
0.30
108.30
110.70
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
3.43
0.50
117.70
121.13
A
A
A
C5
C6
N1
DA
DA
DA
4
4
4
N
1
-3.55
0.50
117.00
113.45
A
A
A
C4
C5
C6
DA
DA
DA
5
5
5
N
1
4.05
0.50
117.70
121.75
A
A
A
C5
C6
N1
DA
DA
DA
5
5
5
N
1
-5.29
0.60
118.60
113.31
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
1
-3.41
0.50
117.00
113.59
A
A
A
C4
C5
C6
DA
DA
DA
7
7
7
N
1
3.04
0.50
117.70
120.74
A
A
A
C5
C6
N1
DA
DA
DA
7
7
7
N
1
-5.17
0.60
118.60
113.43
A
A
A
N1
C6
N6
DA
DA
DA
7
7
7
N
1
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
-3.94
0.60
119.90
115.96
A
A
A
N1
C6
O6
DG
DG
DG
8
8
8
N
1
-4.85
0.60
118.60
113.75
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
1
-3.89
0.60
118.60
114.71
A
A
A
N1
C6
N6
DA
DA
DA
10
10
10
N
1
4.54
0.30
108.30
112.84
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
1
1.87
0.30
108.30
110.17
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
1
4.13
0.60
118.90
123.03
A
A
A
N1
C2
O2
DC
DC
DC
12
12
12
N
1
-5.08
0.70
121.90
116.82
A
A
A
N3
C2
O2
DC
DC
DC
12
12
12
N
1
3.72
0.30
108.30
112.02
A
A
A
O4'
C1'
N9
DG
DG
DG
13
13
13
N
1
2.17
0.30
108.30
110.47
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
1
-4.64
0.70
121.90
117.26
B
B
B
N3
C2
O2
DC
DC
DC
14
14
14
N
1
-3.73
0.60
122.90
119.17
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
1
-4.29
0.70
121.90
117.61
B
B
B
N3
C2
O2
DC
DC
DC
19
19
19
N
1
-3.72
0.60
122.90
119.18
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
1
-3.80
0.60
122.90
119.10
B
B
B
C6
C5
C7
DT
DT
DT
24
24
24
N
1
2.58
0.30
108.30
110.88
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
1
1.91
0.30
108.30
110.21
B
B
B
O4'
C1'
N9
DG
DG
DG
26
26
26
N
2
5.06
0.30
108.30
113.36
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
2
-4.87
0.70
121.90
117.03
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
2
-4.21
0.70
121.90
117.69
A
A
A
N3
C2
O2
DC
DC
DC
2
2
2
N
2
3.30
0.30
108.30
111.60
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
2
3.31
0.50
117.70
121.01
A
A
A
C5
C6
N1
DA
DA
DA
3
3
3
N
2
-4.18
0.60
118.60
114.42
A
A
A
N1
C6
N6
DA
DA
DA
3
3
3
N
2
4.66
0.30
108.30
112.96
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
2
3.15
0.50
117.70
120.85
A
A
A
C5
C6
N1
DA
DA
DA
4
4
4
N
2
-3.67
0.60
118.60
114.93
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
2
-3.65
0.60
119.90
116.25
A
A
A
N1
C6
O6
DG
DG
DG
6
6
6
N
2
-3.82
0.60
118.60
114.78
A
A
A
N1
C6
N6
DA
DA
DA
7
7
7
N
2
-4.15
0.60
119.90
115.75
A
A
A
N1
C6
O6
DG
DG
DG
8
8
8
N
2
-3.35
0.50
117.00
113.65
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
2
3.33
0.50
117.70
121.03
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
2
-4.66
0.60
118.60
113.94
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
2
3.01
0.50
117.70
120.71
A
A
A
C5
C6
N1
DA
DA
DA
10
10
10
N
2
3.13
0.30
108.30
111.43
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
2
2.01
0.30
108.30
110.31
A
A
A
O4'
C1'
N9
DG
DG
DG
13
13
13
N
2
4.13
0.30
108.30
112.43
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
2
-4.20
0.70
121.90
117.70
B
B
B
N3
C2
O2
DC
DC
DC
14
14
14
N
2
-4.33
0.70
121.90
117.57
B
B
B
N3
C2
O2
DC
DC
DC
16
16
16
N
2
-4.04
0.60
122.90
118.86
B
B
B
C6
C5
C7
DT
DT
DT
24
24
24
N
2
4.30
0.30
108.30
112.60
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
2
-4.06
0.60
119.90
115.84
B
B
B
N1
C6
O6
DG
DG
DG
25
25
25
N
2
2.24
0.30
108.30
110.54
B
B
B
O4'
C1'
N9
DG
DG
DG
26
26
26
N
3
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
3
-4.52
0.70
121.90
117.38
A
A
A
N3
C2
O2
DC
DC
DC
2
2
2
N
3
-4.27
0.60
118.60
114.33
A
A
A
N1
C6
N6
DA
DA
DA
3
3
3
N
3
3.11
0.50
117.70
120.81
A
A
A
C5
C6
N1
DA
DA
DA
4
4
4
N
3
-4.41
0.60
118.60
114.19
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
3
3.98
0.30
108.30
112.28
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
3
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
3
3.27
0.50
117.70
120.97
A
A
A
C5
C6
N1
DA
DA
DA
7
7
7
N
3
-4.71
0.60
118.60
113.89
A
A
A
N1
C6
N6
DA
DA
DA
7
7
7
N
3
3.34
0.30
108.30
111.64
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
3
-3.72
0.60
118.60
114.88
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
3
-3.04
0.50
117.00
113.96
A
A
A
C4
C5
C6
DA
DA
DA
10
10
10
N
3
3.35
0.50
117.70
121.05
A
A
A
C5
C6
N1
DA
DA
DA
10
10
10
N
3
2.71
0.30
108.30
111.01
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
3
-4.74
0.70
121.90
117.16
A
A
A
N3
C2
O2
DC
DC
DC
12
12
12
N
3
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N9
DG
DG
DG
13
13
13
N
3
4.77
0.30
108.30
113.07
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
3
2.23
0.30
108.30
110.53
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
3
7.97
1.20
119.70
127.67
B
B
B
C3'
O3'
P
DC
DC
DT
16
16
17
Y
3
-4.44
0.70
121.90
117.46
B
B
B
N3
C2
O2
DC
DC
DC
19
19
19
N
3
7.31
1.20
119.70
127.01
B
B
B
C3'
O3'
P
DT
DT
DC
20
20
21
Y
3
3.88
0.60
118.90
122.78
B
B
B
N1
C2
O2
DC
DC
DC
21
21
21
N
3
-4.57
0.70
121.90
117.33
B
B
B
N3
C2
O2
DC
DC
DC
21
21
21
N
3
-3.81
0.60
122.30
118.49
B
B
B
N3
C2
O2
DT
DT
DT
24
24
24
N
3
2.68
0.30
108.30
110.98
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
3
3.01
0.30
108.30
111.31
B
B
B
O4'
C1'
N9
DG
DG
DG
26
26
26
N
3
-3.72
0.60
119.90
116.18
B
B
B
N1
C6
O6
DG
DG
DG
26
26
26
N
4
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
4
3.69
0.60
118.90
122.59
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
4
-4.63
0.70
121.90
117.27
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
4
-4.06
0.60
118.60
114.54
A
A
A
N1
C6
N6
DA
DA
DA
3
3
3
N
4
-4.81
0.80
102.40
97.59
A
A
A
C3'
C2'
C1'
DA
DA
DA
4
4
4
N
4
2.31
0.30
108.30
110.61
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
4
-3.71
0.60
118.60
114.89
A
A
A
N1
C6
N6
DA
DA
DA
4
4
4
N
4
-3.74
0.60
118.60
114.86
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
4
-3.64
0.60
119.90
116.26
A
A
A
N1
C6
O6
DG
DG
DG
6
6
6
N
4
-3.11
0.50
117.00
113.89
A
A
A
C4
C5
C6
DA
DA
DA
7
7
7
N
4
-4.18
0.60
118.60
114.42
A
A
A
N1
C6
N6
DA
DA
DA
7
7
7
N
4
-4.40
0.60
118.60
114.20
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
4
3.15
0.50
117.70
120.85
A
A
A
C5
C6
N1
DA
DA
DA
10
10
10
N
4
1.95
0.30
108.30
110.25
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
4
2.03
0.30
108.30
110.33
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
4
4.79
0.30
108.30
113.09
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
4
-4.08
0.60
122.30
118.22
B
B
B
N3
C2
O2
DT
DT
DT
18
18
18
N
4
2.54
0.30
108.30
110.84
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
4
-4.60
0.70
121.90
117.30
B
B
B
N3
C2
O2
DC
DC
DC
21
21
21
N
4
-3.62
0.60
122.30
118.68
B
B
B
N3
C2
O2
DT
DT
DT
23
23
23
N
4
1.89
0.30
108.30
110.19
B
B
B
O4'
C1'
N1
DT
DT
DT
24
24
24
N
4
3.05
0.30
108.30
111.35
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
4
3.11
0.30
108.30
111.41
B
B
B
O4'
C1'
N9
DG
DG
DG
26
26
26
N
5
3.75
0.60
118.90
122.65
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
5
-3.00
0.50
117.00
114.00
A
A
A
C4
C5
C6
DA
DA
DA
3
3
3
N
5
3.23
0.50
117.70
120.93
A
A
A
C5
C6
N1
DA
DA
DA
3
3
3
N
5
3.19
0.50
117.70
120.89
A
A
A
C5
C6
N1
DA
DA
DA
5
5
5
N
5
-3.62
0.60
118.60
114.98
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
5
-3.61
0.60
119.90
116.29
A
A
A
N1
C6
O6
DG
DG
DG
6
6
6
N
5
3.30
0.50
117.70
121.00
A
A
A
C5
C6
N1
DA
DA
DA
10
10
10
N
5
1.91
0.30
108.30
110.21
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
5
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N9
DG
DG
DG
13
13
13
N
5
2.88
0.30
108.30
111.18
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
5
4.15
0.60
118.90
123.05
B
B
B
N1
C2
O2
DC
DC
DC
14
14
14
N
5
-4.93
0.70
121.90
116.97
B
B
B
N3
C2
O2
DC
DC
DC
14
14
14
N
5
-3.67
0.60
122.90
119.23
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
5
2.41
0.30
108.30
110.71
B
B
B
O4'
C1'
N1
DT
DT
DT
18
18
18
N
5
-4.24
0.70
121.90
117.66
B
B
B
N3
C2
O2
DC
DC
DC
19
19
19
N
5
2.71
0.30
108.30
111.01
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
5
-4.44
0.70
121.90
117.46
B
B
B
N3
C2
O2
DC
DC
DC
21
21
21
N
5
1.82
0.30
108.30
110.12
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
6
2.27
0.30
108.30
110.57
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
6
-4.34
0.70
121.90
117.56
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
6
-3.88
0.60
118.60
114.72
A
A
A
N1
C6
N6
DA
DA
DA
3
3
3
N
6
2.60
0.30
108.30
110.90
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
6
-3.11
0.50
117.00
113.89
A
A
A
C4
C5
C6
DA
DA
DA
4
4
4
N
6
-4.92
0.60
118.60
113.68
A
A
A
N1
C6
N6
DA
DA
DA
4
4
4
N
6
-4.62
0.60
118.60
113.98
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
6
2.14
0.30
108.30
110.44
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
6
3.22
0.50
117.70
120.92
A
A
A
C5
C6
N1
DA
DA
DA
7
7
7
N
6
-4.52
0.60
118.60
114.08
A
A
A
N1
C6
N6
DA
DA
DA
7
7
7
N
6
2.15
0.30
108.30
110.45
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
6
-3.96
0.60
118.60
114.64
A
A
A
N1
C6
N6
DA
DA
DA
10
10
10
N
6
3.80
0.60
118.90
122.70
A
A
A
N1
C2
O2
DC
DC
DC
12
12
12
N
6
-4.93
0.70
121.90
116.97
A
A
A
N3
C2
O2
DC
DC
DC
12
12
12
N
6
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N9
DG
DG
DG
13
13
13
N
6
4.18
0.60
118.90
123.08
B
B
B
N1
C2
O2
DC
DC
DC
14
14
14
N
6
-5.29
0.70
121.90
116.61
B
B
B
N3
C2
O2
DC
DC
DC
14
14
14
N
6
-3.74
0.60
119.90
116.16
B
B
B
N1
C6
O6
DG
DG
DG
15
15
15
N
6
-3.71
0.60
122.90
119.19
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
6
-4.90
0.70
121.90
117.00
B
B
B
N3
C2
O2
DC
DC
DC
19
19
19
N
6
7.50
1.20
119.70
127.20
B
B
B
C3'
O3'
P
DT
DT
DT
23
23
24
Y
6
2.93
0.30
108.30
111.23
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
7
6.78
0.30
108.30
115.08
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
7
2.95
0.30
108.30
111.25
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
7
-4.71
0.70
121.90
117.19
A
A
A
N3
C2
O2
DC
DC
DC
2
2
2
N
7
-3.63
0.60
118.60
114.97
A
A
A
N1
C6
N6
DA
DA
DA
4
4
4
N
7
-3.10
0.50
117.00
113.90
A
A
A
C4
C5
C6
DA
DA
DA
5
5
5
N
7
3.06
0.50
117.70
120.76
A
A
A
C5
C6
N1
DA
DA
DA
5
5
5
N
7
-4.47
0.60
118.60
114.13
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
7
3.08
0.30
108.30
111.38
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
7
-3.87
0.60
119.90
116.03
A
A
A
N1
C6
O6
DG
DG
DG
8
8
8
N
7
-3.16
0.50
117.00
113.84
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
7
3.05
0.50
117.70
120.75
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
7
-4.70
0.60
118.60
113.90
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
7
-3.62
0.60
118.60
114.98
A
A
A
N1
C6
N6
DA
DA
DA
10
10
10
N
7
2.04
0.30
108.30
110.34
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
7
-3.61
0.60
119.90
116.29
A
A
A
N1
C6
O6
DG
DG
DG
11
11
11
N
7
3.72
0.30
108.30
112.02
A
A
A
O4'
C1'
N9
DG
DG
DG
13
13
13
N
7
-3.66
0.60
119.90
116.24
A
A
A
N1
C6
O6
DG
DG
DG
13
13
13
N
7
3.79
0.30
108.30
112.09
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
7
-3.61
0.60
122.30
118.69
B
B
B
N3
C2
O2
DT
DT
DT
18
18
18
N
7
2.30
0.30
108.30
110.60
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
7
-4.39
0.60
122.30
117.91
B
B
B
N3
C2
O2
DT
DT
DT
24
24
24
N
7
-3.60
0.60
122.90
119.30
B
B
B
C6
C5
C7
DT
DT
DT
24
24
24
N
7
2.96
0.30
108.30
111.26
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
7
2.06
0.30
108.30
110.36
B
B
B
O4'
C1'
N9
DG
DG
DG
26
26
26
N
8
3.84
0.60
118.90
122.74
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
8
-4.44
0.70
121.90
117.46
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
8
4.22
0.30
108.30
112.52
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
8
-4.20
0.70
121.90
117.70
A
A
A
N3
C2
O2
DC
DC
DC
2
2
2
N
8
-4.18
0.60
118.60
114.42
A
A
A
N1
C6
N6
DA
DA
DA
3
3
3
N
8
7.52
1.20
119.70
127.22
A
A
A
C3'
O3'
P
DA
DA
DA
3
3
4
Y
8
3.62
0.50
117.70
121.32
A
A
A
C5
C6
N1
DA
DA
DA
4
4
4
N
8
-3.07
0.50
117.00
113.93
A
A
A
C4
C5
C6
DA
DA
DA
5
5
5
N
8
-3.89
0.60
118.60
114.71
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
8
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
8
3.89
0.60
118.90
122.79
A
A
A
N1
C2
O2
DC
DC
DC
12
12
12
N
8
-4.54
0.70
121.90
117.36
A
A
A
N3
C2
O2
DC
DC
DC
12
12
12
N
8
2.83
0.30
108.30
111.13
A
A
A
O4'
C1'
N9
DG
DG
DG
13
13
13
N
8
3.61
0.30
108.30
111.91
B
B
B
O4'
C1'
N9
DG
DG
DG
15
15
15
N
8
5.20
0.30
108.30
113.50
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
8
3.92
0.60
118.90
122.82
B
B
B
N1
C2
O2
DC
DC
DC
16
16
16
N
8
-4.77
0.70
121.90
117.13
B
B
B
N3
C2
O2
DC
DC
DC
16
16
16
N
8
-4.76
0.70
121.90
117.14
B
B
B
N3
C2
O2
DC
DC
DC
19
19
19
N
8
-3.70
0.60
122.90
119.20
B
B
B
C6
C5
C7
DT
DT
DT
22
22
22
N
8
-3.70
0.60
122.90
119.20
B
B
B
C6
C5
C7
DT
DT
DT
23
23
23
N
8
-4.13
0.60
122.90
118.77
B
B
B
C6
C5
C7
DT
DT
DT
24
24
24
N
9
1.89
0.30
108.30
110.19
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
9
3.87
0.60
118.90
122.77
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
9
-4.41
0.70
121.90
117.49
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
9
7.88
1.20
119.70
127.58
A
A
A
C3'
O3'
P
DC
DC
DA
2
2
3
Y
9
-3.35
0.50
117.00
113.65
A
A
A
C4
C5
C6
DA
DA
DA
3
3
3
N
9
-4.23
0.60
118.60
114.37
A
A
A
N1
C6
N6
DA
DA
DA
3
3
3
N
9
3.64
0.50
117.70
121.34
A
A
A
C5
C6
N1
DA
DA
DA
4
4
4
N
9
-4.55
0.60
118.60
114.05
A
A
A
N1
C6
N6
DA
DA
DA
4
4
4
N
9
3.11
0.50
117.70
120.81
A
A
A
C5
C6
N1
DA
DA
DA
5
5
5
N
9
-4.55
0.60
118.60
114.05
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
9
-3.17
0.50
117.00
113.83
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
9
4.21
0.50
117.70
121.91
A
A
A
C5
C6
N1
DA
DA
DA
10
10
10
N
9
-4.23
0.60
118.60
114.37
A
A
A
N1
C6
N6
DA
DA
DA
10
10
10
N
9
3.42
0.30
108.30
111.72
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
9
6.77
0.30
108.30
115.07
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
9
1.87
0.30
108.30
110.17
B
B
B
O4'
C1'
N9
DG
DG
DG
15
15
15
N
9
3.61
0.60
118.90
122.51
B
B
B
N1
C2
O2
DC
DC
DC
16
16
16
N
9
-4.40
0.70
121.90
117.50
B
B
B
N3
C2
O2
DC
DC
DC
16
16
16
N
9
7.51
1.20
119.70
127.21
B
B
B
C3'
O3'
P
DC
DC
DT
16
16
17
Y
9
-3.65
0.60
122.90
119.25
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
9
2.56
0.30
108.30
110.86
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
9
-3.68
0.60
122.90
119.22
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
9
1.96
0.30
108.30
110.26
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
9
-3.91
0.60
122.90
118.99
B
B
B
C6
C5
C7
DT
DT
DT
22
22
22
N
9
-3.73
0.60
122.90
119.17
B
B
B
C6
C5
C7
DT
DT
DT
23
23
23
N
9
2.22
0.30
108.30
110.52
B
B
B
O4'
C1'
N1
DT
DT
DT
24
24
24
N
9
3.53
0.30
108.30
111.83
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
10
-5.58
0.80
105.90
100.32
A
A
A
O4'
C1'
C2'
DC
DC
DC
1
1
1
N
10
4.61
0.30
108.30
112.91
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
10
3.68
0.60
118.90
122.58
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
10
-5.21
0.70
121.90
116.69
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
10
-4.51
0.70
121.90
117.39
A
A
A
N3
C2
O2
DC
DC
DC
2
2
2
N
10
-4.79
0.60
118.60
113.81
A
A
A
N1
C6
N6
DA
DA
DA
3
3
3
N
10
-4.05
0.60
118.60
114.55
A
A
A
N1
C6
N6
DA
DA
DA
4
4
4
N
10
-4.43
0.60
118.60
114.17
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
10
-3.07
0.50
117.00
113.93
A
A
A
C4
C5
C6
DA
DA
DA
7
7
7
N
10
-5.77
0.60
118.60
112.83
A
A
A
N1
C6
N6
DA
DA
DA
7
7
7
N
10
2.96
0.30
108.30
111.26
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
10
-3.88
0.60
118.60
114.72
A
A
A
N1
C6
N6
DA
DA
DA
10
10
10
N
10
2.40
0.30
108.30
110.70
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
10
2.44
0.30
108.30
110.74
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
10
-4.27
0.70
121.90
117.63
B
B
B
N3
C2
O2
DC
DC
DC
14
14
14
N
10
5.35
0.30
108.30
113.65
B
B
B
O4'
C1'
N9
DG
DG
DG
15
15
15
N
10
-3.93
0.60
122.90
118.97
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
10
-4.16
0.60
122.90
118.74
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
10
-3.89
0.60
122.90
119.01
B
B
B
C6
C5
C7
DT
DT
DT
23
23
23
N
10
7.93
1.20
119.70
127.63
B
B
B
C3'
O3'
P
DT
DT
DT
23
23
24
Y
10
7.40
1.20
119.70
127.10
B
B
B
C3'
O3'
P
DT
DT
DG
24
24
25
Y
10
2.82
0.30
108.30
111.12
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
10
3.38
0.30
108.30
111.68
B
B
B
O4'
C1'
N9
DG
DG
DG
26
26
26
N
11
4.12
0.30
108.30
112.42
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
11
3.95
0.60
118.90
122.85
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
11
-5.42
0.70
121.90
116.48
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
11
-3.10
0.50
117.00
113.90
A
A
A
C4
C5
C6
DA
DA
DA
4
4
4
N
11
3.03
0.50
117.70
120.73
A
A
A
C5
C6
N1
DA
DA
DA
4
4
4
N
11
-4.51
0.60
118.60
114.09
A
A
A
N1
C6
N6
DA
DA
DA
4
4
4
N
11
-4.01
0.60
118.60
114.59
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
11
-3.07
0.50
117.00
113.93
A
A
A
C4
C5
C6
DA
DA
DA
7
7
7
N
11
3.15
0.50
117.70
120.85
A
A
A
C5
C6
N1
DA
DA
DA
7
7
7
N
11
-4.16
0.60
118.60
114.44
A
A
A
N1
C6
N6
DA
DA
DA
7
7
7
N
11
4.42
0.30
108.30
112.72
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
11
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N9
DA
DA
DA
9
9
9
N
11
2.15
0.30
108.30
110.45
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
11
2.71
0.30
108.30
111.01
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
11
-4.01
0.60
119.90
115.89
A
A
A
N1
C6
O6
DG
DG
DG
11
11
11
N
11
2.90
0.30
108.30
111.20
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
11
-4.43
0.70
121.90
117.47
A
A
A
N3
C2
O2
DC
DC
DC
12
12
12
N
11
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N9
DG
DG
DG
13
13
13
N
11
3.09
0.30
108.30
111.39
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
11
-3.66
0.60
122.30
118.64
B
B
B
N3
C2
O2
DT
DT
DT
17
17
17
N
11
2.14
0.30
108.30
110.44
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
11
-4.46
0.70
121.90
117.44
B
B
B
N3
C2
O2
DC
DC
DC
21
21
21
N
11
2.01
0.30
108.30
110.31
B
B
B
O4'
C1'
N1
DT
DT
DT
23
23
23
N
11
-4.03
0.60
122.90
118.87
B
B
B
C6
C5
C7
DT
DT
DT
23
23
23
N
11
1.99
0.30
108.30
110.29
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
11
2.70
0.30
108.30
111.00
B
B
B
O4'
C1'
N9
DG
DG
DG
26
26
26
N
NMR Structure of a 1:1 Complex of Polyamide (Im-Py-Beta-Im-Beta-Im-Py-Beta-Dp) with the Tridecamer DNA Duplex 5'-CCAAAGAGAAGCG-3'
1
N
N
2
N
N
3
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
26
B
N1
DG
13
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
26
B
O6
DG
13
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
26
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
25
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
25
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
25
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
24
B
N3
DT
11
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
24
B
O4
DT
11
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
23
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
23
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
22
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
22
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
21
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
21
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
21
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
B
DT
20
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
B
DT
20
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N1
DG
8
1_555
B
DC
19
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N2
DG
8
1_555
B
DC
19
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
8
A
O6
DG
8
1_555
B
DC
19
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N1
DA
9
1_555
B
DT
18
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N6
DA
9
1_555
B
DT
18
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N1
DA
10
1_555
B
DT
17
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N6
DA
10
1_555
B
DT
17
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N1
DG
11
1_555
B
DC
16
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N2
DG
11
1_555
B
DC
16
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
11
A
O6
DG
11
1_555
B
DC
16
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
12
A
N3
DC
12
1_555
B
DG
15
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
12
A
N4
DC
12
1_555
B
DG
15
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
12
A
O2
DC
12
1_555
B
DG
15
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
13
A
N1
DG
13
1_555
B
DC
14
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
13
A
N2
DG
13
1_555
B
DC
14
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
13
A
O6
DG
13
1_555
B
DC
14
B
N4
DC
1
1_555
DNA
POLYAMIDE, PURINE TRACT, BETA ALANINE, MINOR GROOVE, DNA
1LEJ
PDB
1
1LEJ
1LEJ
PDB
2
1LEJ
1
13
1LEJ
1
13
1LEJ
A
1
1
13
14
26
1LEJ
14
26
1LEJ
B
2
1
13
BINDING SITE FOR RESIDUE P11 A 27
A
P11
27
Software
21
A
DA
3
A
DA
3
21
1_555
A
DA
4
A
DA
4
21
1_555
A
DA
5
A
DA
5
21
1_555
A
DG
6
A
DG
6
21
1_555
A
DA
7
A
DA
7
21
1_555
A
DG
8
A
DG
8
21
1_555
A
DA
9
A
DA
9
21
1_555
A
DA
10
A
DA
10
21
1_555
A
DG
11
A
DG
11
21
1_555
A
DC
12
A
DC
12
21
1_555
A
DG
13
A
DG
13
21
1_555
B
DT
17
B
DT
4
21
1_555
B
DT
18
B
DT
5
21
1_555
B
DC
19
B
DC
6
21
1_555
B
DT
20
B
DT
7
21
1_555
B
DC
21
B
DC
8
21
1_555
B
DT
22
B
DT
9
21
1_555
B
DT
23
B
DT
10
21
1_555
B
DT
24
B
DT
11
21
1_555
B
DG
25
B
DG
12
21
1_555
B
DG
26
B
DG
13
21
1_555