0.041614 0.000000 0.000000 0.000000 0.025471 0.000000 0.000000 0.000000 0.015083 0.00000 0.00000 0.00000 Goodsell, D.S. Ng, H.L. Kopka, M.L. Lown, J.W. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 24.030 39.260 66.300 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C17 H25 N11 O3 431.452 MONOIMIDAZOLE LEXITROPSIN non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 N N N 149 N C N 150 N N N 151 N C N 152 N C N 153 N O N 154 N N Y 155 N C Y 156 N N Y 157 N C Y 158 N C N 159 N C Y 160 N N N 161 N C N 162 N O N 163 N N Y 164 N C Y 165 N C Y 166 N C Y 167 N C Y 168 N N N 169 N C N 170 N C N 171 N O N 172 N N N 173 N C N 174 N C N 175 N C N 176 N N N 177 N N N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing Y 161 N sing Y 162 N doub Y 163 N sing Y 164 N sing Y 165 N doub N 166 N sing N 167 N sing N 168 N doub N 169 N sing Y 170 N doub Y 171 N sing Y 172 N sing N 173 N sing Y 174 N sing Y 175 N doub N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing US Biochemistry BICHAW 0033 0006-2960 34 16654 16661 10.1021/bi00051a013 8527438 Structure of a dicationic monoimidazole lexitropsin bound to DNA. 1995 10.2210/pdb1lex/pdb pdb_00001lex 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 248.00 1 DIFFRACTOMETER RIGAKU AFC-5R SINGLE WAVELENGTH M x-ray 1 1.0 3663.392 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 2 syn polymer 431.452 MONOIMIDAZOLE LEXITROPSIN 1 syn non-polymer 18.015 water 36 nat water no no (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.04 39.85 VAPOR DIFFUSION, SITTING DROP VAPOR DIFFUSION, SITTING DROP, temperature 278.00K 278.00 WATER 1 MPD 1 MG ACETATE 1 SPERMINE_HCL 1 WATER 2 MPD 2 2.800 1 19 A 1 B 24 -1.895 A_DC1:DG24_B 1 -13.833 -0.100 0.050 0.054 2.315 1 19 A 2 B 23 -3.854 A_DG2:DC23_B 2 -8.336 -0.863 0.416 -0.709 -18.855 1 19 A 3 B 22 3.596 A_DC3:DG22_B 3 -7.251 0.013 0.862 -0.102 9.605 1 19 A 4 B 21 3.025 A_DG4:DC21_B 4 -5.049 -0.485 0.056 -0.035 3.777 1 20 A 5 B 20 -0.060 A_DA5:DT20_B 5 -13.039 0.791 -0.031 -0.370 -5.697 1 20 A 6 B 19 4.006 A_DA6:DT19_B 6 -16.719 -0.262 0.094 -0.059 -3.977 1 20 A 7 B 18 3.436 A_DT7:DA18_B 7 -20.543 -0.006 0.014 -0.254 -4.817 1 20 A 8 B 17 9.539 A_DT8:DA17_B 8 -22.291 -0.609 0.113 -0.177 -3.762 1 19 A 9 B 16 -0.580 A_DC9:DG16_B 9 -11.818 0.049 -0.272 -0.428 10.121 1 19 A 10 B 15 1.666 A_DG10:DC15_B 10 -3.003 -0.543 0.330 -0.442 6.600 1 19 A 11 B 14 -2.601 A_DC11:DG14_B 11 -21.109 1.071 0.331 -0.750 8.476 1 19 A 12 B 13 1.983 A_DG12:DC13_B 12 22.716 -0.677 0.162 -0.433 3.241 32.712 A A 1 2 17.415 B B 24 23 3.390 9.643 -0.256 -0.036 AA_DC1DG2:DC23DG24_BB 1 -4.214 7.610 31.017 -1.801 -0.305 3.799 45.372 A A 2 3 -10.541 B B 23 22 3.964 -8.091 0.794 0.502 AA_DG2DC3:DG22DC23_BB 2 -1.297 1.689 44.665 1.509 -1.167 2.598 28.374 A A 3 4 18.903 B B 22 21 2.661 9.024 -0.105 0.538 AA_DC3DG4:DC21DG22_BB 3 6.608 -13.842 26.118 -0.648 1.491 3.508 41.375 A A 4 5 4.363 B B 21 20 3.498 3.080 -0.141 0.317 AA_DG4DA5:DT20DC21_BB 4 0.931 -1.319 41.256 0.095 0.306 3.327 32.795 A A 5 6 12.522 B B 20 19 3.476 7.012 0.005 -0.307 AA_DA5DA6:DT19DT20_BB 5 -2.345 4.188 31.972 -1.813 -0.433 3.225 37.691 A A 6 7 -7.824 B B 19 18 3.190 -5.038 0.022 -0.511 AA_DA6DT7:DA18DT19_BB 6 2.244 -3.485 37.300 -0.148 0.252 3.142 29.995 A A 7 8 8.945 B B 18 17 3.178 4.611 0.362 -0.032 AA_DT7DT8:DA17DA18_BB 7 0.461 -0.894 29.642 -0.985 -0.607 3.361 42.117 A A 8 9 -1.751 B B 17 16 3.410 -1.257 -0.315 0.762 AA_DT8DC9:DG16DA17_BB 8 2.750 -3.829 42.013 1.195 0.732 3.191 27.288 A A 9 10 13.836 B B 16 15 3.160 6.422 0.336 1.090 AA_DC9DG10:DC15DG16_BB 9 -5.634 12.139 25.941 0.715 -2.111 3.415 53.236 A A 10 11 -14.837 B B 15 14 3.683 -13.172 -1.298 0.959 AA_DG10DC11:DG14DC15_BB 10 -2.417 2.723 51.644 1.995 1.278 3.241 29.519 A A 11 12 -20.448 B B 14 13 3.455 -10.201 1.524 0.348 AA_DC11DG12:DC13DG14_BB 11 2.363 -4.737 27.638 2.981 -2.460 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1996-04-03 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1995-10-10 REL REL ILT MONOIMIDAZOLE LEXITROPSIN HOH water ILT 25 2 ILT ILT 25 B HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 35 3 HOH HOH 35 A HOH 37 3 HOH HOH 37 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 54 3 HOH HOH 54 A HOH 56 3 HOH HOH 56 A HOH 57 3 HOH HOH 57 A HOH 61 3 HOH HOH 61 A HOH 26 3 HOH HOH 26 B HOH 27 3 HOH HOH 27 B HOH 28 3 HOH HOH 28 B HOH 29 3 HOH HOH 29 B HOH 30 3 HOH HOH 30 B HOH 33 3 HOH HOH 33 B HOH 34 3 HOH HOH 34 B HOH 36 3 HOH HOH 36 B HOH 40 3 HOH HOH 40 B HOH 41 3 HOH HOH 41 B HOH 42 3 HOH HOH 42 B HOH 43 3 HOH HOH 43 B HOH 44 3 HOH HOH 44 B HOH 45 3 HOH HOH 45 B HOH 48 3 HOH HOH 48 B HOH 49 3 HOH HOH 49 B HOH 50 3 HOH HOH 50 B HOH 53 3 HOH HOH 53 B HOH 55 3 HOH HOH 55 B HOH 58 3 HOH HOH 58 B HOH 59 3 HOH HOH 59 B HOH 60 3 HOH HOH 60 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B C 21 n 9 DC 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -6.50 0.80 102.40 95.90 A A A C3' C2' C1' DC DC DC 1 1 1 N 1 -7.92 0.80 105.90 97.98 A A A O4' C1' C2' DC DC DC 1 1 1 N 1 3.35 0.50 119.90 123.25 A A A C2 N3 C4 DC DC DC 1 1 1 N 1 -2.50 0.40 121.90 119.40 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 3.92 0.60 118.90 122.82 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 -5.70 0.70 108.00 102.30 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -3.94 0.60 128.60 124.66 A A A C5 C6 O6 DG DG DG 2 2 2 N 1 15.08 1.20 119.70 134.78 A A A C3' O3' P DG DG DC 2 2 3 Y 1 9.24 1.10 110.50 119.74 A A A O3' P OP1 DG DC DC 2 3 3 Y 1 -12.84 1.50 119.60 106.76 A A A OP1 P OP2 DC DC DC 3 3 3 N 1 7.72 1.20 110.70 118.42 A A A O5' P OP2 DC DC DC 3 3 3 N 1 -2.79 0.40 104.50 101.71 A A A O4' C4' C3' DC DC DC 3 3 3 N 1 -7.42 1.00 110.10 102.68 A A A C1' O4' C4' DC DC DC 3 3 3 N 1 -6.25 0.80 102.40 96.15 A A A C3' C2' C1' DC DC DC 3 3 3 N 1 7.78 0.50 106.80 114.58 A A A O4' C1' C2' DC DC DC 3 3 3 N 1 3.29 0.40 120.30 123.59 A A A C6 N1 C2 DC DC DC 3 3 3 N 1 -7.31 1.10 118.80 111.49 A A A C2 N1 C1' DC DC DC 3 3 3 N 1 51.46 1.20 119.70 171.16 A A A C3' O3' P DC DC DG 3 3 4 Y 1 -6.41 0.80 109.40 102.99 A A A O5' C5' C4' DG DG DG 4 4 4 N 1 -14.47 1.60 120.90 106.43 A A A P O5' C5' DG DG DG 4 4 4 N 1 -5.73 0.80 102.40 96.67 A A A C3' C2' C1' DG DG DG 4 4 4 N 1 -4.38 0.70 108.00 103.62 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -4.39 0.60 128.60 124.21 A A A C5 C6 O6 DG DG DG 4 4 4 N 1 -5.57 0.80 109.40 103.83 A A A O5' C5' C4' DA DA DA 5 5 5 N 1 1.98 0.30 108.30 110.28 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -3.33 0.50 117.70 114.37 A A A C5 C6 N1 DA DA DA 5 5 5 N 1 5.64 0.60 118.60 124.24 A A A N1 C6 N6 DA DA DA 5 5 5 N 1 8.97 1.20 119.70 128.67 A A A C3' O3' P DA DA DA 5 5 6 Y 1 -6.52 0.80 102.40 95.88 A A A C3' C2' C1' DA DA DA 6 6 6 N 1 5.82 0.60 118.60 124.42 A A A C6 N1 C2 DA DA DA 6 6 6 N 1 -4.90 0.50 129.30 124.40 A A A N1 C2 N3 DA DA DA 6 6 6 N 1 -4.18 0.50 117.70 113.52 A A A C5 C6 N1 DA DA DA 6 6 6 N 1 6.72 0.60 118.60 125.32 A A A N1 C6 N6 DA DA DA 6 6 6 N 1 11.48 1.20 119.70 131.18 A A A C3' O3' P DA DA DT 6 6 7 Y 1 -15.67 1.90 104.00 88.33 A A A O3' P O5' DA DT DT 6 7 7 Y 1 10.03 1.10 110.50 120.53 A A A O3' P OP1 DA DT DT 6 7 7 Y 1 -9.68 0.80 109.40 99.72 A A A O5' C5' C4' DT DT DT 7 7 7 N 1 7.03 1.10 109.80 116.83 A A A C5' C4' O4' DT DT DT 7 7 7 N 1 4.09 0.60 114.60 118.69 A A A N1 C2 N3 DT DT DT 7 7 7 N 1 -5.94 0.60 127.20 121.26 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 4.22 0.60 115.20 119.42 A A A N3 C4 C5 DT DT DT 7 7 7 N 1 -5.30 0.60 123.70 118.40 A A A C5 C6 N1 DT DT DT 7 7 7 N 1 -5.70 0.70 124.90 119.20 A A A C5 C4 O4 DT DT DT 7 7 7 N 1 -8.13 1.00 110.10 101.97 A A A C1' O4' C4' DT DT DT 8 8 8 N 1 -4.28 0.70 108.00 103.72 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 3.73 0.60 114.60 118.33 A A A N1 C2 N3 DT DT DT 8 8 8 N 1 -7.32 0.60 127.20 119.88 A A A C2 N3 C4 DT DT DT 8 8 8 N 1 5.48 0.60 115.20 120.68 A A A N3 C4 C5 DT DT DT 8 8 8 N 1 -3.74 0.60 123.70 119.96 A A A C5 C6 N1 DT DT DT 8 8 8 N 1 -7.54 0.80 123.10 115.56 A A A N1 C2 O2 DT DT DT 8 8 8 N 1 3.81 0.60 122.30 126.11 A A A N3 C2 O2 DT DT DT 8 8 8 N 1 23.58 1.20 119.70 143.28 A A A C3' O3' P DT DT DC 8 8 9 Y 1 7.33 1.20 110.70 118.03 A A A O5' P OP2 DC DC DC 9 9 9 N 1 -6.74 0.80 109.40 102.66 A A A O5' C5' C4' DC DC DC 9 9 9 N 1 -6.33 1.00 110.10 103.77 A A A C1' O4' C4' DC DC DC 9 9 9 N 1 -5.89 0.70 108.00 102.11 A A A O4' C1' N1 DC DC DC 9 9 9 N 1 7.32 0.30 108.30 115.62 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 3.23 0.50 111.50 114.73 A A A C5 C6 N1 DG DG DG 10 10 10 N 1 6.60 0.90 116.20 122.80 A A A N1 C2 N2 DG DG DG 10 10 10 N 1 -6.52 0.70 119.90 113.38 A A A N3 C2 N2 DG DG DG 10 10 10 N 1 -5.31 0.60 128.60 123.29 A A A C5 C6 O6 DG DG DG 10 10 10 N 1 11.35 1.20 119.70 131.05 A A A C3' O3' P DG DG DC 10 10 11 Y 1 -3.05 0.40 121.90 118.85 A A A N3 C4 C5 DC DC DC 11 11 11 N 1 5.24 0.70 118.00 123.24 A A A N3 C4 N4 DC DC DC 11 11 11 N 1 7.33 1.20 119.70 127.03 A A A C3' O3' P DC DC DG 11 11 12 Y 1 19.05 1.60 120.90 139.95 A A A P O5' C5' DG DG DG 12 12 12 N 1 -4.18 0.40 104.50 100.32 A A A O4' C4' C3' DG DG DG 12 12 12 N 1 3.05 0.50 119.90 122.95 B B B C2 N3 C4 DC DC DC 13 13 13 N 1 -2.88 0.40 121.90 119.02 B B B N3 C4 C5 DC DC DC 13 13 13 N 1 10.27 1.20 119.70 129.97 B B B C3' O3' P DC DC DG 13 13 14 Y 1 -7.80 0.80 102.40 94.60 B B B C3' C2' C1' DG DG DG 14 14 14 N 1 -6.93 0.80 105.90 98.97 B B B O4' C1' C2' DG DG DG 14 14 14 N 1 -5.94 0.60 125.10 119.16 B B B C6 N1 C2 DG DG DG 14 14 14 N 1 6.45 0.60 123.90 130.35 B B B N1 C2 N3 DG DG DG 14 14 14 N 1 -4.07 0.50 111.90 107.83 B B B C2 N3 C4 DG DG DG 14 14 14 N 1 3.27 0.50 104.30 107.57 B B B C5 N7 C8 DG DG DG 14 14 14 N 1 -4.50 0.60 128.60 124.10 B B B C5 C6 O6 DG DG DG 14 14 14 N 1 -6.22 0.80 109.40 103.18 B B B O5' C5' C4' DC DC DC 15 15 15 N 1 -10.24 1.60 120.90 110.66 B B B P O5' C5' DC DC DC 15 15 15 N 1 -5.46 0.70 108.00 102.54 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 3.38 0.30 108.30 111.68 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 8.22 1.20 119.70 127.92 B B B C3' O3' P DG DG DA 16 16 17 Y 1 -13.59 1.50 119.60 106.01 B B B OP1 P OP2 DA DA DA 17 17 17 N 1 10.89 1.20 110.70 121.59 B B B O5' P OP2 DA DA DA 17 17 17 N 1 4.55 0.30 108.30 112.85 B B B O4' C1' N9 DA DA DA 17 17 17 N 1 -3.27 0.50 103.90 100.63 B B B C5 N7 C8 DA DA DA 17 17 17 N 1 4.03 0.50 113.80 117.83 B B B N7 C8 N9 DA DA DA 17 17 17 N 1 10.35 1.20 119.70 130.05 B B B C3' O3' P DA DA DA 17 17 18 Y 1 -2.65 0.40 104.50 101.85 B B B O4' C4' C3' DA DA DA 18 18 18 N 1 10.04 1.20 115.70 125.74 B B B C5' C4' C3' DA DA DA 18 18 18 N 1 -5.25 0.80 102.40 97.15 B B B C3' C2' C1' DA DA DA 18 18 18 N 1 4.43 0.30 108.30 112.73 B B B O4' C1' N9 DA DA DA 18 18 18 N 1 -4.92 0.50 129.30 124.38 B B B N1 C2 N3 DA DA DA 18 18 18 N 1 13.19 1.20 119.70 132.89 B B B C3' O3' P DA DA DT 18 18 19 Y 1 8.26 1.20 110.70 118.96 B B B O5' P OP2 DT DT DT 19 19 19 N 1 -6.95 0.80 109.40 102.45 B B B O5' C5' C4' DT DT DT 19 19 19 N 1 -7.98 1.00 110.10 102.12 B B B C1' O4' C4' DT DT DT 19 19 19 N 1 -7.65 0.80 105.90 98.25 B B B O4' C1' C2' DT DT DT 19 19 19 N 1 -4.07 0.60 127.20 123.13 B B B C2 N3 C4 DT DT DT 19 19 19 N 1 4.52 0.60 115.20 119.72 B B B N3 C4 C5 DT DT DT 19 19 19 N 1 -11.24 1.50 119.60 108.36 B B B OP1 P OP2 DT DT DT 20 20 20 N 1 8.56 1.20 110.70 119.26 B B B O5' P OP1 DT DT DT 20 20 20 N 1 11.50 1.20 110.70 122.20 B B B O5' P OP2 DT DT DT 20 20 20 N 1 4.44 0.50 106.80 111.24 B B B O4' C1' C2' DT DT DT 20 20 20 N 1 -11.00 0.70 108.00 97.00 B B B O4' C1' N1 DT DT DT 20 20 20 N 1 -5.80 0.60 127.20 121.40 B B B C2 N3 C4 DT DT DT 20 20 20 N 1 3.69 0.60 115.20 118.89 B B B N3 C4 C5 DT DT DT 20 20 20 N 1 -6.25 0.60 123.70 117.45 B B B C5 C6 N1 DT DT DT 20 20 20 N 1 -5.94 0.60 119.90 113.96 B B B N3 C4 O4 DT DT DT 20 20 20 N 1 -4.41 0.60 122.90 118.49 B B B C6 C5 C7 DT DT DT 20 20 20 N 1 -8.16 0.80 109.40 101.24 B B B O5' C5' C4' DC DC DC 21 21 21 N 1 -6.06 0.70 108.00 101.94 B B B O4' C1' N1 DC DC DC 21 21 21 N 1 2.42 0.40 120.30 122.72 B B B C6 N1 C2 DC DC DC 21 21 21 N 1 11.30 1.20 119.70 131.00 B B B C3' O3' P DC DC DG 21 21 22 Y 1 -5.08 0.80 102.40 97.32 B B B C3' C2' C1' DG DG DG 22 22 22 N 1 -7.40 0.80 105.90 98.50 B B B O4' C1' C2' DG DG DG 22 22 22 N 1 -4.55 0.70 119.90 115.35 B B B N3 C2 N2 DG DG DG 22 22 22 N 1 4.40 0.60 119.90 124.30 B B B N1 C6 O6 DG DG DG 22 22 22 N 1 -5.64 0.60 128.60 122.96 B B B C5 C6 O6 DG DG DG 22 22 22 N 1 18.84 1.50 119.60 138.44 B B B OP1 P OP2 DG DG DG 24 24 24 N 1 -5.27 0.80 109.40 104.13 B B B O5' C5' C4' DG DG DG 24 24 24 N 1 4.71 0.30 108.30 113.01 B B B O4' C1' N9 DG DG DG 24 24 24 N 1 A A O4' C4' DC DC 1 1 -0.063 0.010 1.446 1.383 N 1 A A C2' C1' DC DC 3 3 -0.092 0.010 1.518 1.426 N 1 A A O3' C3' DC DC 3 3 -0.095 0.006 1.419 1.324 N 1 A A O4' C4' DG DG 4 4 -0.079 0.010 1.446 1.367 N 1 A A C5 N7 DG DG 4 4 0.070 0.006 1.388 1.458 N 1 A A N7 C8 DG DG 4 4 -0.053 0.006 1.305 1.252 N 1 A A C8 N9 DG DG 4 4 0.046 0.007 1.374 1.420 N 1 A A O3' C3' DA DA 6 6 -0.081 0.006 1.419 1.338 N 1 A A C4 O4 DT DT 8 8 0.063 0.009 1.228 1.291 N 1 A A O4' C1' DC DC 9 9 0.111 0.011 1.420 1.531 N 1 A A C4 C5 DG DG 10 10 -0.045 0.007 1.379 1.334 N 1 A A C5 N7 DG DG 12 12 0.040 0.006 1.388 1.428 N 1 B B C4 C5 DG DG 14 14 -0.046 0.007 1.379 1.333 N 1 B B C6 N1 DG DG 14 14 -0.044 0.007 1.391 1.347 N 1 B B N7 C8 DG DG 14 14 -0.065 0.006 1.305 1.240 N 1 B B C2' C1' DC DC 15 15 -0.080 0.010 1.518 1.438 N 1 B B O4' C4' DC DC 15 15 -0.064 0.010 1.446 1.382 N 1 B B O4' C4' DG DG 16 16 -0.067 0.010 1.446 1.379 N 1 B B N1 C2 DA DA 17 17 0.059 0.009 1.339 1.398 N 1 B B C2 N3 DA DA 17 17 0.057 0.009 1.331 1.388 N 1 B B C5 N7 DA DA 17 17 0.041 0.006 1.388 1.429 N 1 B B O4' C1' DT DT 19 19 0.074 0.011 1.420 1.494 N 1 B B C4 C5 DT DT 19 19 -0.063 0.009 1.445 1.382 N 1 B B C2' C1' DT DT 20 20 -0.075 0.010 1.518 1.443 N 1 B B C4 C5 DT DT 20 20 -0.062 0.009 1.445 1.383 N 1 B B C6 N1 DT DT 20 20 -0.043 0.007 1.378 1.335 N 1 B B C4 O4 DT DT 20 20 0.067 0.009 1.228 1.295 N 0.2480000 0.1650000 2.250 8.000 2322 86.000 1 2.000 2.250 8.000 36 553 31 486 0 5.287 6.000 5.938 6.000 5.958 6.000 5.830 6.000 0.025 0.030 0.046 0.040 0.024 0.025 0.066 0.050 0.016 0.020 0.165 0.150 0.097 0.100 0.098 0.100 2.250 1LEX 1 refinement NUCLSQ STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 1) 1 N N 1 N N 2 N N 3 N N 3 N N THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 DNA CHAINS AND 1 MONOIMIDAZOLE LEXITROPSIN MOLECULE. INDEPENDENT REFINEMENTS OF THE STRUCTURE WERE CARRIED OUT WITH THE LEXITROPSIN MOLECULE IN TWO DIFFERENT ORIENTATIONS. IT COULD NOT BE DETERMINED WHICH OF THESE ORIENTATIONS WAS CORRECT. THE TWO SETS OF COORDINATES ARE AVAILABLE IN THE PDB FILES 1LEX AND 1LEY. hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 1LEX PDB 1 1LEX 1 12 1LEX 1 12 1LEX A 1 1 12 13 24 1LEX 13 24 1LEX B 1 1 12 BINDING SITE FOR RESIDUE ILT B 25 B ILT 25 Software 12 A DG 4 A DG 4 12 1_555 A DA 5 A DA 5 12 1_555 A DA 6 A DA 6 12 1_555 A DT 7 A DT 7 12 1_555 A DT 8 A DT 8 12 1_555 A DC 9 A DC 9 12 1_555 B DA 17 B DA 5 12 1_555 B DA 18 B DA 6 12 1_555 B DT 19 B DT 7 12 1_555 B DT 20 B DT 8 12 1_555 B DC 21 B DC 9 12 1_555 B HOH 59 E HOH 12 1_555 19 P 21 21 21