0.013177
0.000000
0.000000
0.000000
0.011788
0.000000
0.000000
0.000000
0.008125
0.00000
0.00000
0.00000
Asojo, O.A.
Afonina, E.
Gulnik, S.V.
Yu, B.
Erickson, J.W.
Randad, R.
Mehadjed, D.
Silva, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
75.890
84.830
123.080
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C32 H41 N3 O4
531.686
3-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
58
2001
2008
10.1107/S0907444902014695
12454457
Structures of Ser205 mutant plasmepsin II from Plasmodium falciparum at 1.8 A in complex with the inhibitors rs367 and rs370.
2002
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
327
173
181
10.1016/S0022-2836(03)00036-6
12614616
Novel uncomplexed and complexed structures of plasmepsin II, an aspartic protease from Plasmodium falciparum.
2003
10.2210/pdb1lf2/pdb
pdb_00001lf2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
90
1
IMAGE PLATE
1998-11-15
MAR scanner 345 mm plate
SINGLE WAVELENGTH
M
x-ray
1
0.9200
1.0
X9B
NSLS
0.9200
SYNCHROTRON
NSLS BEAMLINE X9B
37079.824
Plasmepsin 2
3.4.23.39
Residues 123-453
1
man
polymer
531.686
3-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE
1
syn
non-polymer
18.015
water
338
nat
water
Aspartic hemoglobinase II, PFAPD
no
no
LGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYV
SGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL
PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIK
VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNH
SVGIALAKKNL
LGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYV
SGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL
PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIK
VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNH
SVGIALAKKNL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
malaria parasite P. falciparum
Plasmodium
Escherichia
sample
5833
Plasmodium falciparum
562
Escherichia coli
plasmid
PET 22B (NOVAGEN)
1
2.67
53.95
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2002-10-10
1
1
2008-04-28
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF PLASMEPSIN FROM P. FALCIPARUM IN COMPLEX WITH INHIBITOR RS367
CRYSTAL STRUCTURE OF PLASMEPSIN II FROM P. FALCIPARUM IN COMPLEX WITH INHIBITOR EH58
STRUCTURE OF PLASMEPSIN II
RCSB
Y
RCSB
2002-04-10
REL
REL
R37
3-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE
HOH
water
R37
330
2
R37
R37
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
373
3
HOH
HOH
373
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
378
3
HOH
HOH
378
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
HOH
382
3
HOH
HOH
382
A
HOH
383
3
HOH
HOH
383
A
HOH
384
3
HOH
HOH
384
A
HOH
385
3
HOH
HOH
385
A
HOH
386
3
HOH
HOH
386
A
HOH
387
3
HOH
HOH
387
A
HOH
388
3
HOH
HOH
388
A
HOH
389
3
HOH
HOH
389
A
HOH
390
3
HOH
HOH
390
A
HOH
391
3
HOH
HOH
391
A
HOH
392
3
HOH
HOH
392
A
HOH
393
3
HOH
HOH
393
A
HOH
394
3
HOH
HOH
394
A
HOH
395
3
HOH
HOH
395
A
HOH
396
3
HOH
HOH
396
A
HOH
397
3
HOH
HOH
397
A
HOH
398
3
HOH
HOH
398
A
HOH
399
3
HOH
HOH
399
A
HOH
400
3
HOH
HOH
400
A
HOH
401
3
HOH
HOH
401
A
HOH
402
3
HOH
HOH
402
A
HOH
403
3
HOH
HOH
403
A
HOH
404
3
HOH
HOH
404
A
HOH
405
3
HOH
HOH
405
A
HOH
406
3
HOH
HOH
406
A
HOH
407
3
HOH
HOH
407
A
HOH
408
3
HOH
HOH
408
A
HOH
409
3
HOH
HOH
409
A
HOH
410
3
HOH
HOH
410
A
HOH
411
3
HOH
HOH
411
A
HOH
412
3
HOH
HOH
412
A
HOH
413
3
HOH
HOH
413
A
HOH
414
3
HOH
HOH
414
A
HOH
415
3
HOH
HOH
415
A
HOH
416
3
HOH
HOH
416
A
HOH
417
3
HOH
HOH
417
A
HOH
418
3
HOH
HOH
418
A
HOH
419
3
HOH
HOH
419
A
HOH
420
3
HOH
HOH
420
A
HOH
421
3
HOH
HOH
421
A
HOH
422
3
HOH
HOH
422
A
HOH
423
3
HOH
HOH
423
A
HOH
424
3
HOH
HOH
424
A
HOH
425
3
HOH
HOH
425
A
HOH
426
3
HOH
HOH
426
A
HOH
427
3
HOH
HOH
427
A
HOH
428
3
HOH
HOH
428
A
HOH
429
3
HOH
HOH
429
A
HOH
430
3
HOH
HOH
430
A
HOH
431
3
HOH
HOH
431
A
HOH
432
3
HOH
HOH
432
A
HOH
433
3
HOH
HOH
433
A
HOH
434
3
HOH
HOH
434
A
HOH
435
3
HOH
HOH
435
A
HOH
436
3
HOH
HOH
436
A
HOH
437
3
HOH
HOH
437
A
HOH
438
3
HOH
HOH
438
A
HOH
439
3
HOH
HOH
439
A
HOH
440
3
HOH
HOH
440
A
HOH
441
3
HOH
HOH
441
A
HOH
442
3
HOH
HOH
442
A
HOH
443
3
HOH
HOH
443
A
HOH
444
3
HOH
HOH
444
A
HOH
445
3
HOH
HOH
445
A
HOH
446
3
HOH
HOH
446
A
HOH
447
3
HOH
HOH
447
A
HOH
448
3
HOH
HOH
448
A
HOH
449
3
HOH
HOH
449
A
HOH
450
3
HOH
HOH
450
A
HOH
451
3
HOH
HOH
451
A
HOH
452
3
HOH
HOH
452
A
HOH
453
3
HOH
HOH
453
A
HOH
454
3
HOH
HOH
454
A
HOH
455
3
HOH
HOH
455
A
HOH
456
3
HOH
HOH
456
A
HOH
457
3
HOH
HOH
457
A
HOH
458
3
HOH
HOH
458
A
HOH
459
3
HOH
HOH
459
A
HOH
460
3
HOH
HOH
460
A
HOH
461
3
HOH
HOH
461
A
HOH
462
3
HOH
HOH
462
A
HOH
463
3
HOH
HOH
463
A
HOH
464
3
HOH
HOH
464
A
HOH
465
3
HOH
HOH
465
A
HOH
466
3
HOH
HOH
466
A
HOH
467
3
HOH
HOH
467
A
HOH
468
3
HOH
HOH
468
A
HOH
469
3
HOH
HOH
469
A
HOH
470
3
HOH
HOH
470
A
HOH
471
3
HOH
HOH
471
A
HOH
472
3
HOH
HOH
472
A
HOH
473
3
HOH
HOH
473
A
HOH
474
3
HOH
HOH
474
A
HOH
475
3
HOH
HOH
475
A
HOH
476
3
HOH
HOH
476
A
HOH
477
3
HOH
HOH
477
A
HOH
478
3
HOH
HOH
478
A
HOH
479
3
HOH
HOH
479
A
HOH
480
3
HOH
HOH
480
A
HOH
481
3
HOH
HOH
481
A
HOH
482
3
HOH
HOH
482
A
HOH
483
3
HOH
HOH
483
A
HOH
484
3
HOH
HOH
484
A
HOH
485
3
HOH
HOH
485
A
HOH
486
3
HOH
HOH
486
A
HOH
487
3
HOH
HOH
487
A
HOH
488
3
HOH
HOH
488
A
HOH
489
3
HOH
HOH
489
A
HOH
490
3
HOH
HOH
490
A
HOH
491
3
HOH
HOH
491
A
HOH
492
3
HOH
HOH
492
A
HOH
493
3
HOH
HOH
493
A
HOH
494
3
HOH
HOH
494
A
HOH
495
3
HOH
HOH
495
A
HOH
496
3
HOH
HOH
496
A
HOH
497
3
HOH
HOH
497
A
HOH
498
3
HOH
HOH
498
A
HOH
499
3
HOH
HOH
499
A
HOH
500
3
HOH
HOH
500
A
HOH
501
3
HOH
HOH
501
A
HOH
502
3
HOH
HOH
502
A
HOH
503
3
HOH
HOH
503
A
HOH
504
3
HOH
HOH
504
A
HOH
505
3
HOH
HOH
505
A
HOH
506
3
HOH
HOH
506
A
HOH
507
3
HOH
HOH
507
A
HOH
508
3
HOH
HOH
508
A
HOH
509
3
HOH
HOH
509
A
HOH
510
3
HOH
HOH
510
A
HOH
511
3
HOH
HOH
511
A
HOH
512
3
HOH
HOH
512
A
HOH
513
3
HOH
HOH
513
A
HOH
514
3
HOH
HOH
514
A
HOH
515
3
HOH
HOH
515
A
HOH
516
3
HOH
HOH
516
A
HOH
517
3
HOH
HOH
517
A
HOH
518
3
HOH
HOH
518
A
HOH
519
3
HOH
HOH
519
A
HOH
520
3
HOH
HOH
520
A
HOH
521
3
HOH
HOH
521
A
HOH
522
3
HOH
HOH
522
A
HOH
523
3
HOH
HOH
523
A
HOH
524
3
HOH
HOH
524
A
HOH
525
3
HOH
HOH
525
A
HOH
526
3
HOH
HOH
526
A
HOH
527
3
HOH
HOH
527
A
HOH
528
3
HOH
HOH
528
A
HOH
529
3
HOH
HOH
529
A
HOH
530
3
HOH
HOH
530
A
HOH
531
3
HOH
HOH
531
A
HOH
532
3
HOH
HOH
532
A
HOH
533
3
HOH
HOH
533
A
HOH
534
3
HOH
HOH
534
A
HOH
535
3
HOH
HOH
535
A
HOH
536
3
HOH
HOH
536
A
HOH
537
3
HOH
HOH
537
A
HOH
538
3
HOH
HOH
538
A
HOH
539
3
HOH
HOH
539
A
HOH
540
3
HOH
HOH
540
A
HOH
541
3
HOH
HOH
541
A
HOH
542
3
HOH
HOH
542
A
HOH
543
3
HOH
HOH
543
A
HOH
544
3
HOH
HOH
544
A
HOH
545
3
HOH
HOH
545
A
HOH
546
3
HOH
HOH
546
A
HOH
547
3
HOH
HOH
547
A
HOH
548
3
HOH
HOH
548
A
HOH
549
3
HOH
HOH
549
A
HOH
550
3
HOH
HOH
550
A
HOH
551
3
HOH
HOH
551
A
HOH
552
3
HOH
HOH
552
A
HOH
553
3
HOH
HOH
553
A
HOH
554
3
HOH
HOH
554
A
HOH
555
3
HOH
HOH
555
A
HOH
556
3
HOH
HOH
556
A
HOH
557
3
HOH
HOH
557
A
HOH
558
3
HOH
HOH
558
A
HOH
559
3
HOH
HOH
559
A
HOH
560
3
HOH
HOH
560
A
HOH
561
3
HOH
HOH
561
A
HOH
562
3
HOH
HOH
562
A
HOH
563
3
HOH
HOH
563
A
HOH
564
3
HOH
HOH
564
A
HOH
565
3
HOH
HOH
565
A
HOH
566
3
HOH
HOH
566
A
HOH
567
3
HOH
HOH
567
A
HOH
568
3
HOH
HOH
568
A
HOH
569
3
HOH
HOH
569
A
HOH
570
3
HOH
HOH
570
A
HOH
571
3
HOH
HOH
571
A
HOH
572
3
HOH
HOH
572
A
HOH
573
3
HOH
HOH
573
A
HOH
574
3
HOH
HOH
574
A
HOH
575
3
HOH
HOH
575
A
HOH
576
3
HOH
HOH
576
A
HOH
577
3
HOH
HOH
577
A
HOH
578
3
HOH
HOH
578
A
HOH
579
3
HOH
HOH
579
A
HOH
580
3
HOH
HOH
580
A
HOH
581
3
HOH
HOH
581
A
HOH
582
3
HOH
HOH
582
A
HOH
583
3
HOH
HOH
583
A
HOH
584
3
HOH
HOH
584
A
HOH
585
3
HOH
HOH
585
A
HOH
586
3
HOH
HOH
586
A
HOH
587
3
HOH
HOH
587
A
HOH
588
3
HOH
HOH
588
A
HOH
589
3
HOH
HOH
589
A
HOH
590
3
HOH
HOH
590
A
HOH
591
3
HOH
HOH
591
A
HOH
592
3
HOH
HOH
592
A
HOH
593
3
HOH
HOH
593
A
HOH
594
3
HOH
HOH
594
A
HOH
595
3
HOH
HOH
595
A
HOH
596
3
HOH
HOH
596
A
HOH
597
3
HOH
HOH
597
A
HOH
598
3
HOH
HOH
598
A
HOH
599
3
HOH
HOH
599
A
HOH
600
3
HOH
HOH
600
A
HOH
601
3
HOH
HOH
601
A
HOH
602
3
HOH
HOH
602
A
HOH
603
3
HOH
HOH
603
A
HOH
604
3
HOH
HOH
604
A
HOH
605
3
HOH
HOH
605
A
HOH
606
3
HOH
HOH
606
A
HOH
607
3
HOH
HOH
607
A
HOH
608
3
HOH
HOH
608
A
HOH
609
3
HOH
HOH
609
A
HOH
610
3
HOH
HOH
610
A
HOH
611
3
HOH
HOH
611
A
HOH
612
3
HOH
HOH
612
A
HOH
613
3
HOH
HOH
613
A
HOH
614
3
HOH
HOH
614
A
HOH
615
3
HOH
HOH
615
A
HOH
616
3
HOH
HOH
616
A
HOH
617
3
HOH
HOH
617
A
HOH
618
3
HOH
HOH
618
A
HOH
619
3
HOH
HOH
619
A
HOH
620
3
HOH
HOH
620
A
HOH
621
3
HOH
HOH
621
A
HOH
622
3
HOH
HOH
622
A
HOH
623
3
HOH
HOH
623
A
HOH
624
3
HOH
HOH
624
A
HOH
625
3
HOH
HOH
625
A
HOH
626
3
HOH
HOH
626
A
HOH
627
3
HOH
HOH
627
A
HOH
628
3
HOH
HOH
628
A
HOH
629
3
HOH
HOH
629
A
HOH
630
3
HOH
HOH
630
A
HOH
631
3
HOH
HOH
631
A
HOH
632
3
HOH
HOH
632
A
HOH
633
3
HOH
HOH
633
A
HOH
634
3
HOH
HOH
634
A
HOH
635
3
HOH
HOH
635
A
HOH
636
3
HOH
HOH
636
A
HOH
637
3
HOH
HOH
637
A
HOH
638
3
HOH
HOH
638
A
HOH
639
3
HOH
HOH
639
A
HOH
640
3
HOH
HOH
640
A
HOH
641
3
HOH
HOH
641
A
HOH
642
3
HOH
HOH
642
A
HOH
643
3
HOH
HOH
643
A
HOH
644
3
HOH
HOH
644
A
HOH
645
3
HOH
HOH
645
A
HOH
646
3
HOH
HOH
646
A
HOH
647
3
HOH
HOH
647
A
HOH
648
3
HOH
HOH
648
A
HOH
649
3
HOH
HOH
649
A
HOH
650
3
HOH
HOH
650
A
HOH
651
3
HOH
HOH
651
A
HOH
652
3
HOH
HOH
652
A
HOH
653
3
HOH
HOH
653
A
HOH
654
3
HOH
HOH
654
A
HOH
655
3
HOH
HOH
655
A
HOH
656
3
HOH
HOH
656
A
HOH
657
3
HOH
HOH
657
A
HOH
658
3
HOH
HOH
658
A
HOH
659
3
HOH
HOH
659
A
HOH
660
3
HOH
HOH
660
A
HOH
661
3
HOH
HOH
661
A
HOH
662
3
HOH
HOH
662
A
HOH
663
3
HOH
HOH
663
A
HOH
664
3
HOH
HOH
664
A
HOH
665
3
HOH
HOH
665
A
HOH
666
3
HOH
HOH
666
A
HOH
667
3
HOH
HOH
667
A
HOH
668
3
HOH
HOH
668
A
n
1
-1
A
n
2
0
A
SER
1
n
3
SER
1
A
SER
2
n
4
SER
2
A
ASN
3
n
5
ASN
3
A
ASP
4
n
6
ASP
4
A
ASN
5
n
7
ASN
5
A
ILE
6
n
8
ILE
6
A
GLU
7
n
9
GLU
7
A
LEU
8
n
10
LEU
8
A
VAL
9
n
11
VAL
9
A
ASP
10
n
12
ASP
10
A
PHE
11
n
13
PHE
11
A
GLN
12
n
14
GLN
12
A
ASN
13
n
15
ASN
13
A
ILE
14
n
16
ILE
14
A
MET
15
n
17
MET
15
A
PHE
16
n
18
PHE
16
A
TYR
17
n
19
TYR
17
A
GLY
18
n
20
GLY
18
A
ASP
19
n
21
ASP
19
A
ALA
20
n
22
ALA
20
A
GLU
21
n
23
GLU
21
A
VAL
22
n
24
VAL
22
A
GLY
23
n
25
GLY
23
A
ASP
24
n
26
ASP
24
A
ASN
25
n
27
ASN
25
A
GLN
26
n
28
GLN
26
A
GLN
27
n
29
GLN
27
A
PRO
28
n
30
PRO
28
A
PHE
29
n
31
PHE
29
A
THR
30
n
32
THR
30
A
PHE
31
n
33
PHE
31
A
ILE
32
n
34
ILE
32
A
LEU
33
n
35
LEU
33
A
ASP
34
n
36
ASP
34
A
THR
35
n
37
THR
35
A
GLY
36
n
38
GLY
36
A
SER
37
n
39
SER
37
A
ALA
38
n
40
ALA
38
A
ASN
39
n
41
ASN
39
A
LEU
40
n
42
LEU
40
A
TRP
41
n
43
TRP
41
A
VAL
42
n
44
VAL
42
A
PRO
43
n
45
PRO
43
A
SER
44
n
46
SER
44
A
VAL
45
n
47
VAL
45
A
LYS
46
n
48
LYS
46
A
CYS
47
n
49
CYS
47
A
THR
48
n
50
THR
48
A
THR
49
n
51
THR
49
A
ALA
50
n
52
ALA
50
A
GLY
51
n
53
GLY
51
A
CYS
52
n
54
CYS
52
A
LEU
53
n
55
LEU
53
A
THR
54
n
56
THR
54
A
LYS
55
n
57
LYS
55
A
HIS
56
n
58
HIS
56
A
LEU
57
n
59
LEU
57
A
TYR
58
n
60
TYR
58
A
ASP
59
n
61
ASP
59
A
SER
60
n
62
SER
60
A
SER
61
n
63
SER
61
A
LYS
62
n
64
LYS
62
A
SER
63
n
65
SER
63
A
ARG
64
n
66
ARG
64
A
THR
65
n
67
THR
65
A
TYR
66
n
68
TYR
66
A
GLU
67
n
69
GLU
67
A
LYS
68
n
70
LYS
68
A
ASP
69
n
71
ASP
69
A
GLY
70
n
72
GLY
70
A
THR
71
n
73
THR
71
A
LYS
72
n
74
LYS
72
A
VAL
73
n
75
VAL
73
A
GLU
74
n
76
GLU
74
A
MET
75
n
77
MET
75
A
ASN
76
n
78
ASN
76
A
TYR
77
n
79
TYR
77
A
VAL
78
n
80
VAL
78
A
SER
79
n
81
SER
79
A
GLY
80
n
82
GLY
80
A
THR
81
n
83
THR
81
A
VAL
82
n
84
VAL
82
A
SER
83
n
85
SER
83
A
GLY
84
n
86
GLY
84
A
PHE
85
n
87
PHE
85
A
PHE
86
n
88
PHE
86
A
SER
87
n
89
SER
87
A
LYS
88
n
90
LYS
88
A
ASP
89
n
91
ASP
89
A
LEU
90
n
92
LEU
90
A
VAL
91
n
93
VAL
91
A
THR
92
n
94
THR
92
A
VAL
93
n
95
VAL
93
A
GLY
94
n
96
GLY
94
A
ASN
95
n
97
ASN
95
A
LEU
96
n
98
LEU
96
A
SER
97
n
99
SER
97
A
LEU
98
n
100
LEU
98
A
PRO
99
n
101
PRO
99
A
TYR
100
n
102
TYR
100
A
LYS
101
n
103
LYS
101
A
PHE
102
n
104
PHE
102
A
ILE
103
n
105
ILE
103
A
GLU
104
n
106
GLU
104
A
VAL
105
n
107
VAL
105
A
ILE
106
n
108
ILE
106
A
ASP
107
n
109
ASP
107
A
THR
108
n
110
THR
108
A
ASN
109
n
111
ASN
109
A
GLY
110
n
112
GLY
110
A
PHE
111
n
113
PHE
111
A
GLU
112
n
114
GLU
112
A
PRO
113
n
115
PRO
113
A
THR
114
n
116
THR
114
A
TYR
115
n
117
TYR
115
A
THR
116
n
118
THR
116
A
ALA
117
n
119
ALA
117
A
SER
118
n
120
SER
118
A
THR
119
n
121
THR
119
A
PHE
120
n
122
PHE
120
A
ASP
121
n
123
ASP
121
A
GLY
122
n
124
GLY
122
A
ILE
123
n
125
ILE
123
A
LEU
124
n
126
LEU
124
A
GLY
125
n
127
GLY
125
A
LEU
126
n
128
LEU
126
A
GLY
127
n
129
GLY
127
A
TRP
128
n
130
TRP
128
A
LYS
129
n
131
LYS
129
A
ASP
130
n
132
ASP
130
A
LEU
131
n
133
LEU
131
A
SER
132
n
134
SER
132
A
ILE
133
n
135
ILE
133
A
GLY
134
n
136
GLY
134
A
SER
135
n
137
SER
135
A
VAL
136
n
138
VAL
136
A
ASP
137
n
139
ASP
137
A
PRO
138
n
140
PRO
138
A
ILE
139
n
141
ILE
139
A
VAL
140
n
142
VAL
140
A
VAL
141
n
143
VAL
141
A
GLU
142
n
144
GLU
142
A
LEU
143
n
145
LEU
143
A
LYS
144
n
146
LYS
144
A
ASN
145
n
147
ASN
145
A
GLN
146
n
148
GLN
146
A
ASN
147
n
149
ASN
147
A
LYS
148
n
150
LYS
148
A
ILE
149
n
151
ILE
149
A
GLU
150
n
152
GLU
150
A
ASN
151
n
153
ASN
151
A
ALA
152
n
154
ALA
152
A
LEU
153
n
155
LEU
153
A
PHE
154
n
156
PHE
154
A
THR
155
n
157
THR
155
A
PHE
156
n
158
PHE
156
A
TYR
157
n
159
TYR
157
A
LEU
158
n
160
LEU
158
A
PRO
159
n
161
PRO
159
A
VAL
160
n
162
VAL
160
A
HIS
161
n
163
HIS
161
A
ASP
162
n
164
ASP
162
A
LYS
163
n
165
LYS
163
A
HIS
164
n
166
HIS
164
A
THR
165
n
167
THR
165
A
GLY
166
n
168
GLY
166
A
PHE
167
n
169
PHE
167
A
LEU
168
n
170
LEU
168
A
THR
169
n
171
THR
169
A
ILE
170
n
172
ILE
170
A
GLY
171
n
173
GLY
171
A
GLY
172
n
174
GLY
172
A
ILE
173
n
175
ILE
173
A
GLU
174
n
176
GLU
174
A
GLU
175
n
177
GLU
175
A
ARG
176
n
178
ARG
176
A
PHE
177
n
179
PHE
177
A
TYR
178
n
180
TYR
178
A
GLU
179
n
181
GLU
179
A
GLY
180
n
182
GLY
180
A
PRO
181
n
183
PRO
181
A
LEU
182
n
184
LEU
182
A
THR
183
n
185
THR
183
A
TYR
184
n
186
TYR
184
A
GLU
185
n
187
GLU
185
A
LYS
186
n
188
LYS
186
A
LEU
187
n
189
LEU
187
A
ASN
188
n
190
ASN
188
A
HIS
189
n
191
HIS
189
A
ASP
190
n
192
ASP
190
A
LEU
191
n
193
LEU
191
A
TYR
192
n
194
TYR
192
A
TRP
193
n
195
TRP
193
A
GLN
194
n
196
GLN
194
A
ILE
195
n
197
ILE
195
A
THR
196
n
198
THR
196
A
LEU
197
n
199
LEU
197
A
ASP
198
n
200
ASP
198
A
ALA
199
n
201
ALA
199
A
HIS
200
n
202
HIS
200
A
VAL
201
n
203
VAL
201
A
GLY
202
n
204
GLY
202
A
ASN
203
n
205
ASN
203
A
ILE
204
n
206
ILE
204
A
SER
205
n
207
SER
205
A
LEU
206
n
208
LEU
206
A
GLU
207
n
209
GLU
207
A
LYS
208
n
210
LYS
208
A
ALA
209
n
211
ALA
209
A
ASN
210
n
212
ASN
210
A
CYS
211
n
213
CYS
211
A
ILE
212
n
214
ILE
212
A
VAL
213
n
215
VAL
213
A
ASP
214
n
216
ASP
214
A
SER
215
n
217
SER
215
A
GLY
216
n
218
GLY
216
A
THR
217
n
219
THR
217
A
SER
218
n
220
SER
218
A
ALA
219
n
221
ALA
219
A
ILE
220
n
222
ILE
220
A
THR
221
n
223
THR
221
A
VAL
222
n
224
VAL
222
A
PRO
223
n
225
PRO
223
A
THR
224
n
226
THR
224
A
ASP
225
n
227
ASP
225
A
PHE
226
n
228
PHE
226
A
LEU
227
n
229
LEU
227
A
ASN
228
n
230
ASN
228
A
LYS
229
n
231
LYS
229
A
MET
230
n
232
MET
230
A
LEU
231
n
233
LEU
231
A
GLN
232
n
234
GLN
232
A
ASN
233
n
235
ASN
233
A
LEU
234
n
236
LEU
234
A
ASP
235
n
237
ASP
235
A
VAL
236
n
238
VAL
236
A
ILE
237
n
239
ILE
237
A
LYS
238
n
240
LYS
238
A
VAL
239
n
241
VAL
239
A
PRO
240
n
242
PRO
240
A
PHE
241
n
243
PHE
241
A
LEU
242
n
244
LEU
242
A
PRO
243
n
245
PRO
243
A
PHE
244
n
246
PHE
244
A
TYR
245
n
247
TYR
245
A
VAL
246
n
248
VAL
246
A
THR
247
n
249
THR
247
A
LEU
248
n
250
LEU
248
A
CYS
249
n
251
CYS
249
A
ASN
250
n
252
ASN
250
A
ASN
251
n
253
ASN
251
A
SER
252
n
254
SER
252
A
LYS
253
n
255
LYS
253
A
LEU
254
n
256
LEU
254
A
PRO
255
n
257
PRO
255
A
THR
256
n
258
THR
256
A
PHE
257
n
259
PHE
257
A
GLU
258
n
260
GLU
258
A
PHE
259
n
261
PHE
259
A
THR
260
n
262
THR
260
A
SER
261
n
263
SER
261
A
GLU
262
n
264
GLU
262
A
ASN
263
n
265
ASN
263
A
GLY
264
n
266
GLY
264
A
LYS
265
n
267
LYS
265
A
TYR
266
n
268
TYR
266
A
THR
267
n
269
THR
267
A
LEU
268
n
270
LEU
268
A
GLU
269
n
271
GLU
269
A
PRO
270
n
272
PRO
270
A
GLU
271
n
273
GLU
271
A
TYR
272
n
274
TYR
272
A
TYR
273
n
275
TYR
273
A
LEU
274
n
276
LEU
274
A
GLN
275
n
277
GLN
275
A
HIS
276
n
278
HIS
276
A
ILE
277
n
279
ILE
277
A
GLU
278
n
280
GLU
278
A
ASP
279
n
281
ASP
279
A
VAL
280
n
282
VAL
280
A
GLY
281
n
283
GLY
281
A
PRO
282
n
284
PRO
282
A
GLY
283
n
285
GLY
283
A
LEU
284
n
286
LEU
284
A
CYS
285
n
287
CYS
285
A
MET
286
n
288
MET
286
A
LEU
287
n
289
LEU
287
A
ASN
288
n
290
ASN
288
A
ILE
289
n
291
ILE
289
A
ILE
290
n
292
ILE
290
A
GLY
291
n
293
GLY
291
A
LEU
292
n
294
LEU
292
A
ASP
293
n
295
ASP
293
A
PHE
294
n
296
PHE
294
A
PRO
295
n
297
PRO
295
A
VAL
296
n
298
VAL
296
A
PRO
297
n
299
PRO
297
A
THR
298
n
300
THR
298
A
PHE
299
n
301
PHE
299
A
ILE
300
n
302
ILE
300
A
LEU
301
n
303
LEU
301
A
GLY
302
n
304
GLY
302
A
ASP
303
n
305
ASP
303
A
PRO
304
n
306
PRO
304
A
PHE
305
n
307
PHE
305
A
MET
306
n
308
MET
306
A
ARG
307
n
309
ARG
307
A
LYS
308
n
310
LYS
308
A
TYR
309
n
311
TYR
309
A
PHE
310
n
312
PHE
310
A
THR
311
n
313
THR
311
A
VAL
312
n
314
VAL
312
A
PHE
313
n
315
PHE
313
A
ASP
314
n
316
ASP
314
A
TYR
315
n
317
TYR
315
A
ASP
316
n
318
ASP
316
A
ASN
317
n
319
ASN
317
A
HIS
318
n
320
HIS
318
A
SER
319
n
321
SER
319
A
VAL
320
n
322
VAL
320
A
GLY
321
n
323
GLY
321
A
ILE
322
n
324
ILE
322
A
ALA
323
n
325
ALA
323
A
LEU
324
n
326
LEU
324
A
ALA
325
n
327
ALA
325
A
LYS
326
n
328
LYS
326
A
LYS
327
n
329
LYS
327
A
ASN
328
n
330
ASN
328
A
LEU
329
n
331
LEU
329
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
185
A
N
GLU
187
A
O
VAL
320
A
O
VAL
322
A
N
ALA
323
A
N
ALA
325
A
O
PHE
310
A
O
PHE
312
A
N
PHE
313
A
N
PHE
315
A
O
PHE
154
A
O
PHE
156
A
O
TYR
157
A
O
TYR
159
A
N
PHE
167
A
N
PHE
169
A
N
ILE
170
A
N
ILE
172
A
O
ASP
4
A
O
ASP
6
A
N
PHE
11
A
N
PHE
13
A
O
MET
15
A
O
MET
17
A
O
VAL
22
A
O
VAL
24
A
N
GLN
27
A
N
GLN
29
A
O
THR
30
A
O
THR
32
A
N
GLY
122
A
N
GLY
124
A
O
ILE
123
A
O
ILE
125
A
N
TRP
41
A
N
TRP
43
A
N
VAL
42
A
N
VAL
44
A
O
ILE
103
A
O
ILE
105
A
O
ASP
107
A
O
ASP
109
A
N
SER
83
A
N
SER
85
A
O
LYS
88
A
O
LYS
90
A
N
GLU
67
A
N
GLU
69
A
N
MET
75
A
N
MET
77
A
O
VAL
82
A
O
VAL
84
A
N
THR
92
A
N
THR
94
A
O
GLU
21
A
O
GLU
23
A
O
LEU
268
A
O
LEU
270
A
N
PHE
257
A
N
PHE
259
A
O
THR
260
A
O
THR
262
A
N
ASP
198
A
N
ASP
200
A
N
VAL
201
A
N
VAL
203
A
O
ILE
204
A
O
ILE
206
A
N
ILE
212
A
N
ILE
214
A
O
PHE
299
A
O
PHE
301
A
O
ILE
300
A
O
ILE
302
A
N
THR
221
A
N
THR
223
A
N
VAL
222
A
N
VAL
224
A
O
ILE
290
A
O
ILE
292
A
O
ILE
237
A
O
ILE
239
A
N
VAL
246
A
N
VAL
248
A
O
THR
247
A
O
THR
249
A
N
CYS
285
A
N
CYS
287
A
O
MET
286
A
O
MET
288
A
N
GLN
275
A
N
GLN
277
1
A
LEU
-1
A
LEU
1
1
Y
1
A
GLY
0
A
GLY
2
1
Y
1
-3.28
0.50
120.30
117.02
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
64
64
64
N
1
A
A
O
O
HOH
HOH
443
443
2.10
1_555
4_565
1
A
A
O
O
HOH
HOH
599
599
2.16
1_555
2_665
1
A
SER
2
74.35
-126.96
1
A
ASN
3
82.47
145.21
1
A
GLN
12
47.07
20.77
1
A
ASP
69
-126.33
-68.44
1
A
ALA
117
-104.65
40.27
1
A
ASP
162
89.71
-66.07
1
A
LEU
191
-136.59
-88.69
1
A
ASN
233
67.56
-3.10
1
A
PHE
241
71.67
-42.78
1
A
ASN
251
-55.15
103.65
1
A
HIS
276
99.32
-115.77
1
A
ILE
277
79.05
107.05
1
A
GLU
278
72.10
44.67
1
A
ASP
279
-83.27
-144.37
1
A
PRO
282
-92.78
-102.67
35.4
0.258
0.195
0.198
1.8
20
1562
35627
random
1
2.0
MOLECULAR REPLACEMENT
1.8
20
338
2996
39
0
2619
2.1
0.017
1.6
27.4
1.8
20
1LF2
35627
2.0
0.058
1
13.1
4.0
95
0.25
1.8
1.9
2.0
3.0
53
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
X-PLOR
3.1
CRYSTAL STRUCTURE OF PLASMEPSIN II FROM P FALCIPARUM IN COMPLEX WITH INHIBITOR RS370
1
N
N
2
N
N
3
N
N
A
ALA
50
A
ALA
52
HELX_P
A
LYS
55
A
LYS
57
5
1
6
A
ASP
59
A
ASP
61
HELX_P
A
SER
63
A
SER
65
5
2
5
A
THR
108
A
THR
110
HELX_P
A
GLU
112
A
GLU
114
5
3
5
A
THR
114
A
THR
116
HELX_P
A
SER
118
A
SER
120
5
4
5
A
TRP
128
A
TRP
130
HELX_P
A
SER
132
A
SER
134
5
5
5
A
PRO
138
A
PRO
140
HELX_P
A
GLN
146
A
GLN
148
1
6
9
A
GLU
174
A
GLU
176
HELX_P
A
ARG
176
A
ARG
178
5
7
3
A
PRO
223
A
PRO
225
HELX_P
A
GLN
232
A
GLN
234
1
8
10
A
GLU
269
A
GLU
271
HELX_P
A
TYR
273
A
TYR
275
1
9
5
A
GLY
302
A
GLY
304
HELX_P
A
LYS
308
A
LYS
310
1
10
7
disulf
1.990
A
CYS
47
A
SG
CYS
49
1_555
A
CYS
52
A
SG
CYS
54
1_555
disulf
2.044
A
CYS
249
A
SG
CYS
251
1_555
A
CYS
285
A
SG
CYS
287
1_555
HYDROLASE
plasmepsin, plasmodium falciparum, aspartic protease, HYDROLASE
A
GLU
112
A
GLU
114
1
A
PRO
113
A
PRO
115
0.13
PLM2_PLAFA
UNP
1
1
P46925
MDITVREHDFKHGFIKSNSTFDGLNIDNSKNKKKIQKGFQILYVLLFCSVMCGLFYYVYENVWLQRDNEMNEILKNSEHL
TIGFKVENAHDRILKTIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTG
SANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYT
ASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQIT
LDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQH
IEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAKKNL
123
453
1LF2
-1
329
P46925
A
1
1
331
1
MET
engineered mutation
SER
205
1LF2
A
P46925
UNP
329
207
15
7
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
178
A
TYR
180
A
LYS
186
A
LYS
188
A
SER
319
A
SER
321
A
ALA
325
A
ALA
327
A
TYR
309
A
TYR
311
A
ASP
314
A
ASP
316
A
LEU
153
A
LEU
155
A
TYR
157
A
TYR
159
A
GLY
166
A
GLY
168
A
ILE
170
A
ILE
172
A
ASP
4
A
ASP
6
A
PHE
11
A
PHE
13
A
MET
15
A
MET
17
A
VAL
22
A
VAL
24
A
GLN
27
A
GLN
29
A
ASP
34
A
ASP
36
A
GLY
122
A
GLY
124
A
GLY
125
A
GLY
127
A
LEU
40
A
LEU
42
A
PRO
43
A
PRO
45
A
LEU
96
A
LEU
98
A
ASP
107
A
ASP
109
A
THR
81
A
THR
83
A
VAL
93
A
VAL
95
A
GLU
67
A
GLU
69
A
ASN
76
A
ASN
78
A
THR
81
A
THR
83
A
VAL
93
A
VAL
95
A
MET
15
A
MET
17
A
VAL
22
A
VAL
24
A
LYS
265
A
LYS
267
A
LEU
268
A
LEU
270
A
PHE
257
A
PHE
259
A
THR
260
A
THR
262
A
GLN
194
A
GLN
196
A
VAL
201
A
VAL
203
A
ILE
204
A
ILE
206
A
VAL
213
A
VAL
215
A
THR
298
A
THR
300
A
LEU
301
A
LEU
303
A
ILE
220
A
ILE
222
A
VAL
222
A
VAL
224
A
ILE
289
A
ILE
291
A
GLY
291
A
GLY
293
A
VAL
236
A
VAL
238
A
LYS
238
A
LYS
240
A
TYR
245
A
TYR
247
A
LEU
248
A
LEU
250
A
LEU
284
A
LEU
286
A
LEU
287
A
LEU
289
A
LEU
274
A
LEU
276
A
HIS
276
A
HIS
278
BINDING SITE FOR RESIDUE R37 A 330
A
R37
330
Software
19
A
ASP
34
A
ASP
36
19
1_555
A
GLY
36
A
GLY
38
19
1_555
A
ASN
76
A
ASN
78
19
1_555
A
TYR
77
A
TYR
79
19
1_555
A
VAL
78
A
VAL
80
19
1_555
A
SER
79
A
SER
81
19
1_555
A
PHE
111
A
PHE
113
19
1_555
A
ILE
123
A
ILE
125
19
1_555
A
LEU
131
A
LEU
133
19
1_555
A
TYR
192
A
TYR
194
19
1_555
A
ASP
214
A
ASP
216
19
1_555
A
GLY
216
A
GLY
218
19
1_555
A
THR
217
A
THR
219
19
1_555
A
SER
218
A
SER
220
19
1_555
A
PRO
240
A
PRO
242
19
3_655
A
PHE
241
A
PHE
243
19
3_655
A
PHE
294
A
PHE
296
19
1_555
A
PRO
295
A
PRO
297
19
2_665
A
VAL
296
A
VAL
298
19
2_665
23
I 2 2 2