0.018723
0.000000
0.005056
0.000000
0.025060
0.000000
0.000000
0.000000
0.011332
0.00000
0.00000
0.00000
Asojo, O.A.
Gulnik, S.V.
Afonina, E.
Yu, B.
Ellman, J.A.
Haque, T.S.
Silva, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
105.11
90.00
53.411
39.904
91.409
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C46 H51 N3 O10
805.911
N-(1-BENZYL-3-{[3-(1,3-DIOXO-1,3-DIHYDRO-ISOINDOL-2-YL)-PROPIONYL]-[2-(HEXAHYDRO-BENZO[1,3]DIOXOL-5-YL)-ETHYL]-AMINO}-2-HYDROXY-PROPYL)-4-BENZYLOXY-3,5-DIMETHOXY-BENZAMIDE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
S
C
N
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
N
N
100
N
O
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
O
Y
109
N
C
Y
110
N
C
Y
111
N
C
Y
112
N
C
Y
113
N
C
Y
114
N
C
N
115
N
C
N
116
N
N
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
C
N
121
N
C
N
122
S
C
N
123
R
C
N
124
N
C
N
125
S
C
N
126
N
O
N
127
N
C
N
128
N
O
Y
129
N
C
Y
130
N
C
Y
131
N
C
Y
132
N
C
Y
133
N
C
Y
134
N
C
N
135
N
O
N
136
N
O
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
Y
141
N
C
Y
142
N
C
Y
143
N
C
Y
144
N
C
Y
145
N
C
Y
146
N
C
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
N
Y
254
N
C
Y
255
N
C
Y
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
S
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
N
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
S
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
C
N
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
R
C
N
419
N
O
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
N
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
N
N
459
S
C
N
460
N
C
N
461
N
O
N
462
N
C
Y
463
N
C
Y
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
N
469
N
O
N
470
N
O
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
N
N
483
S
C
N
484
N
C
N
485
N
O
N
486
N
C
N
487
N
C
N
488
N
C
N
489
N
O
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
Y
90
N
doub
Y
91
N
sing
Y
92
N
sing
N
93
N
sing
Y
94
N
doub
N
95
N
sing
Y
96
N
doub
N
97
N
sing
Y
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
Y
128
N
doub
Y
129
N
sing
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
doub
N
134
N
sing
Y
135
N
sing
N
136
N
sing
Y
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
Y
165
N
doub
Y
166
N
sing
N
167
N
sing
Y
168
N
sing
N
169
N
sing
Y
170
N
doub
N
171
N
sing
Y
172
N
sing
Y
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
doub
Y
189
N
sing
N
190
N
sing
Y
191
N
sing
N
192
N
sing
Y
193
N
doub
N
194
N
sing
Y
195
N
sing
Y
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
Y
256
N
sing
Y
257
N
doub
Y
258
N
doub
N
259
N
sing
Y
260
N
sing
N
261
N
sing
Y
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
Y
433
N
doub
Y
434
N
sing
Y
435
N
sing
N
436
N
sing
Y
437
N
doub
Y
438
N
sing
Y
439
N
sing
N
440
N
sing
Y
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
doub
N
445
N
sing
Y
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
Y
461
N
doub
Y
462
N
sing
Y
463
N
sing
N
464
N
sing
Y
465
N
doub
N
466
N
sing
Y
467
N
doub
N
468
N
sing
Y
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
doub
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
327
173
181
10.1016/S0022-2836(03)00036-6
12614616
Novel uncomplexed and complexed structures of plasmepsin II, an aspartic protease from Plasmodium falciparum.
2003
10.2210/pdb1lf3/pdb
pdb_00001lf3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
MAR scanner 345 mm plate
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
X9B
NSLS
1.5418
SYNCHROTRON
NSLS BEAMLINE X9B
37123.941
plasmepsin 2
3.4.23.39
Residues 123-453
1
man
polymer
805.911
N-(1-BENZYL-3-{[3-(1,3-DIOXO-1,3-DIHYDRO-ISOINDOL-2-YL)-PROPIONYL]-[2-(HEXAHYDRO-BENZO[1,3]DIOXOL-5-YL)-ETHYL]-AMINO}-2-HYDROXY-PROPYL)-4-BENZYLOXY-3,5-DIMETHOXY-BENZAMIDE
1
syn
non-polymer
18.015
water
52
nat
water
no
no
LGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYV
SGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL
PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIK
VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNH
SVGIALAKKNL
LGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYV
SGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL
PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIK
VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNH
SVGIALAKKNL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
malaria parasite P. falciparum
Plasmodium
Escherichia
sample
5833
Plasmodium falciparum
562
Escherichia coli
plasmid
PET 22B (NOVAGEN)
1
2.53
51.44
298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-10-10
1
1
2008-04-28
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF PLASMEPSIN FROM P. FALCIPARUM IN COMPLEX WITH INHIBITOR RS367
CRYSTAL STRUCTURE OF PLASMEPSIN II FROM P FALCIPARUM IN COMPLEX WITH INHIBITOR RS370
STRUCTURE OF PLASMEPSIN II
PLASMEPSIN II, A HEMOGLOBIN-DEGRADING ENZYME FROM PLASMODIUM FALCIPARUM, IN COMPLEX WITH PEPSTATIN A
CRYSTAL STRUCTURE OF PLASMEPSIN IV FROM P. FALCIPARUM IN COMPLEX WITH PEPSTATIN A
RCSB
Y
RCSB
2002-04-10
REL
REL
EH5
N-(1-BENZYL-3-{[3-(1,3-DIOXO-1,3-DIHYDRO-ISOINDOL-2-YL)-PROPIONYL]-[2-(HEXAHYDRO-BENZO[1,3]DIOXOL-5-YL)-ETHYL]-AMINO}-2-HYDROXY-PROPYL)-4-BENZYLOXY-3,5-DIMETHOXY-BENZAMIDE
HOH
water
1SME
PDB ENTRY 1SME
PDB
experimental model
EH5
332
2
EH5
EH5
332
A
H2O
1
3
HOH
HOH
333
A
H2O
2
3
HOH
HOH
334
A
H2O
3
3
HOH
HOH
335
A
H2O
4
3
HOH
HOH
336
A
H2O
5
3
HOH
HOH
337
A
H2O
6
3
HOH
HOH
338
A
H2O
7
3
HOH
HOH
339
A
H2O
8
3
HOH
HOH
340
A
H2O
9
3
HOH
HOH
341
A
H2O
10
3
HOH
HOH
342
A
H2O
11
3
HOH
HOH
343
A
H2O
12
3
HOH
HOH
344
A
H2O
13
3
HOH
HOH
345
A
H2O
14
3
HOH
HOH
346
A
H2O
1
3
HOH
HOH
347
A
H2O
2
3
HOH
HOH
348
A
H2O
3
3
HOH
HOH
349
A
H2O
4
3
HOH
HOH
350
A
H2O
5
3
HOH
HOH
351
A
H2O
6
3
HOH
HOH
352
A
H2O
7
3
HOH
HOH
353
A
H2O
8
3
HOH
HOH
354
A
H2O
9
3
HOH
HOH
355
A
H2O
10
3
HOH
HOH
356
A
H2O
11
3
HOH
HOH
357
A
H2O
12
3
HOH
HOH
358
A
H2O
13
3
HOH
HOH
359
A
H2O
14
3
HOH
HOH
360
A
H2O
15
3
HOH
HOH
361
A
H2O
16
3
HOH
HOH
362
A
H2O
17
3
HOH
HOH
363
A
H2O
18
3
HOH
HOH
364
A
H2O
19
3
HOH
HOH
365
A
H2O
20
3
HOH
HOH
366
A
H2O
21
3
HOH
HOH
367
A
H2O
22
3
HOH
HOH
368
A
H2O
23
3
HOH
HOH
369
A
H2O
24
3
HOH
HOH
370
A
H2O
25
3
HOH
HOH
371
A
H2O
26
3
HOH
HOH
372
A
H2O
27
3
HOH
HOH
373
A
H2O
28
3
HOH
HOH
374
A
H2O
29
3
HOH
HOH
375
A
H2O
30
3
HOH
HOH
376
A
H2O
31
3
HOH
HOH
377
A
H2O
32
3
HOH
HOH
378
A
H2O
33
3
HOH
HOH
379
A
H2O
34
3
HOH
HOH
380
A
H2O
35
3
HOH
HOH
381
A
H2O
36
3
HOH
HOH
382
A
H2O
37
3
HOH
HOH
383
A
H2O
38
3
HOH
HOH
384
A
LEU
0
n
1
LEU
-1
A
GLY
0
n
2
GLY
0
A
SER
1
n
3
SER
1
A
SER
2
n
4
SER
2
A
ASN
3
n
5
ASN
3
A
ASP
4
n
6
ASP
4
A
ASN
5
n
7
ASN
5
A
ILE
6
n
8
ILE
6
A
GLU
7
n
9
GLU
7
A
LEU
8
n
10
LEU
8
A
VAL
9
n
11
VAL
9
A
ASP
10
n
12
ASP
10
A
PHE
11
n
13
PHE
11
A
GLN
12
n
14
GLN
12
A
ASN
13
n
15
ASN
13
A
ILE
14
n
16
ILE
14
A
MET
15
n
17
MET
15
A
PHE
16
n
18
PHE
16
A
TYR
17
n
19
TYR
17
A
GLY
18
n
20
GLY
18
A
ASP
19
n
21
ASP
19
A
ALA
20
n
22
ALA
20
A
GLU
21
n
23
GLU
21
A
VAL
22
n
24
VAL
22
A
GLY
23
n
25
GLY
23
A
ASP
24
n
26
ASP
24
A
ASN
25
n
27
ASN
25
A
GLN
26
n
28
GLN
26
A
GLN
27
n
29
GLN
27
A
PRO
28
n
30
PRO
28
A
PHE
29
n
31
PHE
29
A
THR
30
n
32
THR
30
A
PHE
31
n
33
PHE
31
A
ILE
32
n
34
ILE
32
A
LEU
33
n
35
LEU
33
A
ASP
34
n
36
ASP
34
A
THR
35
n
37
THR
35
A
GLY
36
n
38
GLY
36
A
SER
37
n
39
SER
37
A
ALA
38
n
40
ALA
38
A
ASN
39
n
41
ASN
39
A
LEU
40
n
42
LEU
40
A
TRP
41
n
43
TRP
41
A
VAL
42
n
44
VAL
42
A
PRO
43
n
45
PRO
43
A
SER
44
n
46
SER
44
A
VAL
45
n
47
VAL
45
A
LYS
46
n
48
LYS
46
A
CYS
47
n
49
CYS
47
A
THR
48
n
50
THR
48
A
THR
49
n
51
THR
49
A
ALA
50
n
52
ALA
50
A
GLY
51
n
53
GLY
51
A
CYS
52
n
54
CYS
52
A
LEU
53
n
55
LEU
53
A
THR
54
n
56
THR
54
A
LYS
55
n
57
LYS
55
A
HIS
56
n
58
HIS
56
A
LEU
57
n
59
LEU
57
A
TYR
58
n
60
TYR
58
A
ASP
59
n
61
ASP
59
A
SER
60
n
62
SER
60
A
SER
61
n
63
SER
61
A
LYS
62
n
64
LYS
62
A
SER
63
n
65
SER
63
A
ARG
64
n
66
ARG
64
A
THR
65
n
67
THR
65
A
TYR
66
n
68
TYR
66
A
GLU
67
n
69
GLU
67
A
LYS
68
n
70
LYS
68
A
ASP
69
n
71
ASP
69
A
GLY
70
n
72
GLY
70
A
THR
71
n
73
THR
71
A
LYS
72
n
74
LYS
72
A
VAL
73
n
75
VAL
73
A
GLU
74
n
76
GLU
74
A
MET
75
n
77
MET
75
A
ASN
76
n
78
ASN
76
A
TYR
77
n
79
TYR
77
A
VAL
78
n
80
VAL
78
A
SER
79
n
81
SER
79
A
GLY
80
n
82
GLY
80
A
THR
81
n
83
THR
81
A
VAL
82
n
84
VAL
82
A
SER
83
n
85
SER
83
A
GLY
84
n
86
GLY
84
A
PHE
85
n
87
PHE
85
A
PHE
86
n
88
PHE
86
A
SER
87
n
89
SER
87
A
LYS
88
n
90
LYS
88
A
ASP
89
n
91
ASP
89
A
LEU
90
n
92
LEU
90
A
VAL
91
n
93
VAL
91
A
THR
92
n
94
THR
92
A
VAL
93
n
95
VAL
93
A
GLY
94
n
96
GLY
94
A
ASN
95
n
97
ASN
95
A
LEU
96
n
98
LEU
96
A
SER
97
n
99
SER
97
A
LEU
98
n
100
LEU
98
A
PRO
99
n
101
PRO
99
A
TYR
100
n
102
TYR
100
A
LYS
101
n
103
LYS
101
A
PHE
102
n
104
PHE
102
A
ILE
103
n
105
ILE
103
A
GLU
104
n
106
GLU
104
A
VAL
105
n
107
VAL
105
A
ILE
106
n
108
ILE
106
A
ASP
107
n
109
ASP
107
A
THR
108
n
110
THR
108
A
ASN
109
n
111
ASN
109
A
GLY
110
n
112
GLY
110
A
PHE
111
n
113
PHE
111
A
GLU
112
n
114
GLU
112
A
PRO
113
n
115
PRO
113
A
THR
114
n
116
THR
114
A
TYR
115
n
117
TYR
115
A
THR
116
n
118
THR
116
A
ALA
117
n
119
ALA
117
A
SER
118
n
120
SER
118
A
THR
119
n
121
THR
119
A
PHE
120
n
122
PHE
120
A
ASP
121
n
123
ASP
121
A
GLY
122
n
124
GLY
122
A
ILE
123
n
125
ILE
123
A
LEU
124
n
126
LEU
124
A
GLY
125
n
127
GLY
125
A
LEU
126
n
128
LEU
126
A
GLY
127
n
129
GLY
127
A
TRP
128
n
130
TRP
128
A
LYS
129
n
131
LYS
129
A
ASP
130
n
132
ASP
130
A
LEU
131
n
133
LEU
131
A
SER
132
n
134
SER
132
A
ILE
133
n
135
ILE
133
A
GLY
134
n
136
GLY
134
A
SER
135
n
137
SER
135
A
VAL
136
n
138
VAL
136
A
ASP
137
n
139
ASP
137
A
PRO
138
n
140
PRO
138
A
ILE
139
n
141
ILE
139
A
VAL
140
n
142
VAL
140
A
VAL
141
n
143
VAL
141
A
GLU
142
n
144
GLU
142
A
LEU
143
n
145
LEU
143
A
LYS
144
n
146
LYS
144
A
ASN
145
n
147
ASN
145
A
GLN
146
n
148
GLN
146
A
ASN
147
n
149
ASN
147
A
LYS
148
n
150
LYS
148
A
ILE
149
n
151
ILE
149
A
GLU
150
n
152
GLU
150
A
ASN
151
n
153
ASN
151
A
ALA
152
n
154
ALA
152
A
LEU
153
n
155
LEU
153
A
PHE
154
n
156
PHE
154
A
THR
155
n
157
THR
155
A
PHE
156
n
158
PHE
156
A
TYR
157
n
159
TYR
157
A
LEU
158
n
160
LEU
158
A
PRO
159
n
161
PRO
159
A
VAL
160
n
162
VAL
160
A
HIS
161
n
163
HIS
161
A
ASP
162
n
164
ASP
162
A
LYS
163
n
165
LYS
163
A
HIS
164
n
166
HIS
164
A
THR
165
n
167
THR
165
A
GLY
166
n
168
GLY
166
A
PHE
167
n
169
PHE
167
A
LEU
168
n
170
LEU
168
A
THR
169
n
171
THR
169
A
ILE
170
n
172
ILE
170
A
GLY
171
n
173
GLY
171
A
GLY
172
n
174
GLY
172
A
ILE
173
n
175
ILE
173
A
GLU
174
n
176
GLU
174
A
GLU
175
n
177
GLU
175
A
ARG
176
n
178
ARG
176
A
PHE
177
n
179
PHE
177
A
TYR
178
n
180
TYR
178
A
GLU
179
n
181
GLU
179
A
GLY
180
n
182
GLY
180
A
PRO
181
n
183
PRO
181
A
LEU
182
n
184
LEU
182
A
THR
183
n
185
THR
183
A
TYR
184
n
186
TYR
184
A
GLU
185
n
187
GLU
185
A
LYS
186
n
188
LYS
186
A
LEU
187
n
189
LEU
187
A
ASN
188
n
190
ASN
188
A
HIS
189
n
191
HIS
189
A
ASP
190
n
192
ASP
190
A
LEU
191
n
193
LEU
191
A
TYR
192
n
194
TYR
192
A
TRP
193
n
195
TRP
193
A
GLN
194
n
196
GLN
194
A
ILE
195
n
197
ILE
195
A
THR
196
n
198
THR
196
A
LEU
197
n
199
LEU
197
A
ASP
198
n
200
ASP
198
A
ALA
199
n
201
ALA
199
A
HIS
200
n
202
HIS
200
A
VAL
201
n
203
VAL
201
A
GLY
202
n
204
GLY
202
A
ASN
203
n
205
ASN
203
A
ILE
204
n
206
ILE
204
A
MET
205
n
207
MET
205
A
LEU
206
n
208
LEU
206
A
GLU
207
n
209
GLU
207
A
LYS
208
n
210
LYS
208
A
ALA
209
n
211
ALA
209
A
ASN
210
n
212
ASN
210
A
CYS
211
n
213
CYS
211
A
ILE
212
n
214
ILE
212
A
VAL
213
n
215
VAL
213
A
ASP
214
n
216
ASP
214
A
SER
215
n
217
SER
215
A
GLY
216
n
218
GLY
216
A
THR
217
n
219
THR
217
A
SER
218
n
220
SER
218
A
ALA
219
n
221
ALA
219
A
ILE
220
n
222
ILE
220
A
THR
221
n
223
THR
221
A
VAL
222
n
224
VAL
222
A
PRO
223
n
225
PRO
223
A
THR
224
n
226
THR
224
A
ASP
225
n
227
ASP
225
A
PHE
226
n
228
PHE
226
A
LEU
227
n
229
LEU
227
A
ASN
228
n
230
ASN
228
A
LYS
229
n
231
LYS
229
A
MET
230
n
232
MET
230
A
LEU
231
n
233
LEU
231
A
GLN
232
n
234
GLN
232
A
ASN
233
n
235
ASN
233
A
LEU
234
n
236
LEU
234
A
ASP
235
n
237
ASP
235
A
VAL
236
n
238
VAL
236
A
ILE
237
n
239
ILE
237
A
LYS
238
n
240
LYS
238
A
VAL
239
n
241
VAL
239
A
PRO
240
n
242
PRO
240
A
PHE
241
n
243
PHE
241
A
LEU
242
n
244
LEU
242
A
PRO
243
n
245
PRO
243
A
PHE
244
n
246
PHE
244
A
TYR
245
n
247
TYR
245
A
VAL
246
n
248
VAL
246
A
THR
247
n
249
THR
247
A
LEU
248
n
250
LEU
248
A
CYS
249
n
251
CYS
249
A
ASN
250
n
252
ASN
250
A
ASN
251
n
253
ASN
251
A
SER
252
n
254
SER
252
A
LYS
253
n
255
LYS
253
A
LEU
254
n
256
LEU
254
A
PRO
255
n
257
PRO
255
A
THR
256
n
258
THR
256
A
PHE
257
n
259
PHE
257
A
GLU
258
n
260
GLU
258
A
PHE
259
n
261
PHE
259
A
THR
260
n
262
THR
260
A
SER
261
n
263
SER
261
A
GLU
262
n
264
GLU
262
A
ASN
263
n
265
ASN
263
A
GLY
264
n
266
GLY
264
A
LYS
265
n
267
LYS
265
A
TYR
266
n
268
TYR
266
A
THR
267
n
269
THR
267
A
LEU
268
n
270
LEU
268
A
GLU
269
n
271
GLU
269
A
PRO
270
n
272
PRO
270
A
GLU
271
n
273
GLU
271
A
TYR
272
n
274
TYR
272
A
TYR
273
n
275
TYR
273
A
LEU
274
n
276
LEU
274
A
GLN
275
n
277
GLN
275
A
HIS
276
n
278
HIS
276
A
ILE
277
n
279
ILE
277
A
GLU
278
n
280
GLU
278
A
ASP
279
n
281
ASP
279
A
VAL
280
n
282
VAL
280
A
GLY
281
n
283
GLY
281
A
PRO
282
n
284
PRO
282
A
GLY
283
n
285
GLY
283
A
LEU
284
n
286
LEU
284
A
CYS
285
n
287
CYS
285
A
MET
286
n
288
MET
286
A
LEU
287
n
289
LEU
287
A
ASN
288
n
290
ASN
288
A
ILE
289
n
291
ILE
289
A
ILE
290
n
292
ILE
290
A
GLY
291
n
293
GLY
291
A
LEU
292
n
294
LEU
292
A
ASP
293
n
295
ASP
293
A
PHE
294
n
296
PHE
294
A
PRO
295
n
297
PRO
295
A
VAL
296
n
298
VAL
296
A
PRO
297
n
299
PRO
297
A
THR
298
n
300
THR
298
A
PHE
299
n
301
PHE
299
A
ILE
300
n
302
ILE
300
A
LEU
301
n
303
LEU
301
A
GLY
302
n
304
GLY
302
A
ASP
303
n
305
ASP
303
A
PRO
304
n
306
PRO
304
A
PHE
305
n
307
PHE
305
A
MET
306
n
308
MET
306
A
ARG
307
n
309
ARG
307
A
LYS
308
n
310
LYS
308
A
TYR
309
n
311
TYR
309
A
PHE
310
n
312
PHE
310
A
THR
311
n
313
THR
311
A
VAL
312
n
314
VAL
312
A
PHE
313
n
315
PHE
313
A
ASP
314
n
316
ASP
314
A
TYR
315
n
317
TYR
315
A
ASP
316
n
318
ASP
316
A
ASN
317
n
319
ASN
317
A
HIS
318
n
320
HIS
318
A
SER
319
n
321
SER
319
A
VAL
320
n
322
VAL
320
A
GLY
321
n
323
GLY
321
A
ILE
322
n
324
ILE
322
A
ALA
323
n
325
ALA
323
A
LEU
324
n
326
LEU
324
A
ALA
325
n
327
ALA
325
A
LYS
326
n
328
LYS
326
A
LYS
327
n
329
LYS
327
A
ASN
328
n
330
ASN
328
A
LEU
329
n
331
LEU
329
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA,PQS
2
dimeric
5660
-46
26420
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_656
-x+1,y,-z+1
crystal symmetry operation
29.5831406976
0.0000000000
88.2487303142
A
N
GLU
185
A
N
GLU
187
A
O
VAL
320
A
O
VAL
322
A
O
ALA
323
A
O
ALA
325
A
N
PHE
310
A
N
PHE
312
A
N
PHE
313
A
N
PHE
315
A
O
PHE
154
A
O
PHE
156
A
N
TYR
157
A
N
TYR
159
A
O
PHE
167
A
O
PHE
169
A
N
ILE
170
A
N
ILE
172
A
O
ASP
4
A
O
ASP
6
A
N
PHE
11
A
N
PHE
13
A
O
MET
15
A
O
MET
17
A
O
VAL
22
A
O
VAL
24
A
N
GLN
27
A
N
GLN
29
A
O
THR
30
A
O
THR
32
A
N
GLY
122
A
N
GLY
124
A
O
ILE
123
A
O
ILE
125
A
N
TRP
41
A
N
TRP
43
A
O
LEU
40
A
O
LEU
42
A
N
ILE
103
A
N
ILE
105
A
N
ILE
106
A
N
ILE
108
A
O
SER
83
A
O
SER
85
A
O
LYS
88
A
O
LYS
90
A
N
GLU
67
A
N
GLU
69
A
N
MET
75
A
N
MET
77
A
O
VAL
82
A
O
VAL
84
A
O
THR
92
A
O
THR
94
A
N
GLU
21
A
N
GLU
23
A
O
LEU
268
A
O
LEU
270
A
N
PHE
257
A
N
PHE
259
A
O
THR
260
A
O
THR
262
A
N
ASP
198
A
N
ASP
200
A
N
ALA
199
A
N
ALA
201
A
O
LEU
206
A
O
LEU
208
A
O
ASN
210
A
O
ASN
212
A
N
PHE
299
A
N
PHE
301
A
O
ILE
300
A
O
ILE
302
A
N
THR
221
A
N
THR
223
A
N
VAL
222
A
N
VAL
224
A
O
ILE
290
A
O
ILE
292
A
O
THR
247
A
O
THR
249
A
N
CYS
285
A
N
CYS
287
A
N
MET
286
A
N
MET
288
A
O
GLN
275
A
O
GLN
277
1
A
C15
EH5
332
PLANAR
1
A
C19
EH5
332
PLANAR
1
A
C27
EH5
332
PLANAR
1
19.76
1.50
119.30
139.06
A
A
A
C
N
CA
LEU
PRO
PRO
242
243
243
Y
1
-20.96
2.10
128.40
107.44
A
A
A
C
N
CD
LEU
PRO
PRO
242
243
243
Y
1
A
ASP
69
-131.03
-62.34
1
A
TYR
77
-111.81
-163.40
1
A
ASN
95
-154.94
10.85
1
A
TYR
115
-50.19
-70.88
1
A
ASP
162
80.37
3.44
1
A
LEU
191
-121.75
-79.54
1
A
VAL
201
-123.53
-107.69
1
A
ASN
233
68.49
-47.82
1
A
ASP
235
-54.19
95.89
1
A
VAL
239
77.16
56.97
1
A
PRO
240
-46.77
-129.18
1
A
LEU
242
-152.14
53.52
1
A
PRO
243
13.94
173.85
1
A
PHE
244
77.05
-134.40
1
A
CYS
249
-43.83
-19.95
1
A
SER
261
-131.63
-159.49
1
A
ILE
277
-161.98
38.15
1
A
PRO
282
-44.75
88.67
1
A
ASN
288
-90.58
50.39
1
A
PRO
297
-39.73
114.58
1
A
HIS
318
24.24
70.00
1
A
ASN
328
-151.62
12.35
PROTEIN_REP.PARAM
PROTEIN.TOP
31.4
-1.71
0.00
1.13
6.67
0.00
-4.96
0.224
0.011
0.178
0.178
2.70
17.76
447
9125
4.9
87.1
RANDOM
1165627.48
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1SME
FLAT MODEL
50.7997
0.278511
0.33
0.27
5.00
0.50
0.39
2.70
17.76
52
2730
59
0
2619
0.007
1.5
26.2
0.86
0.318
0.040
0.276
2.87
64
1313
6
4.6
80.4
62.3
2.7
20
1LF3
9126
2.0
0.066
0.06
1
12.1
3.0
93
0.32
2.7
2.9
2.0
0.28
1
3.0
90
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
0.9
CRYSTAL STRUCTURE OF PLASMEPSIN II FROM P FALCIPARUM IN COMPLEX WITH INHIBITOR EH58
1
N
N
2
N
N
3
N
N
A
ALA
50
A
ALA
52
HELX_P
A
LYS
55
A
LYS
57
5
1
6
A
ASP
59
A
ASP
61
HELX_P
A
SER
63
A
SER
65
5
2
5
A
PRO
113
A
PRO
115
HELX_P
A
SER
118
A
SER
120
1
3
6
A
TRP
128
A
TRP
130
HELX_P
A
SER
132
A
SER
134
5
4
5
A
PRO
138
A
PRO
140
HELX_P
A
GLN
146
A
GLN
148
1
5
9
A
PRO
223
A
PRO
225
HELX_P
A
GLN
232
A
GLN
234
1
6
10
A
GLU
269
A
GLU
271
HELX_P
A
TYR
273
A
TYR
275
1
7
5
A
GLU
278
A
GLU
280
HELX_P
A
GLY
281
A
GLY
283
5
8
4
A
GLY
302
A
GLY
304
HELX_P
A
LYS
308
A
LYS
310
1
9
7
disulf
2.033
A
CYS
47
A
SG
CYS
49
1_555
A
CYS
52
A
SG
CYS
54
1_555
disulf
2.033
A
CYS
249
A
SG
CYS
251
1_555
A
CYS
285
A
SG
CYS
287
1_555
HYDROLASE
plasmepsin, plasmodium falciparum, aspartic protease, HYDROLASE
A
GLU
112
A
GLU
114
1
A
PRO
113
A
PRO
115
0.19
PLM2_PLAFA
UNP
1
1
P46925
MDITVREHDFKHGFIKSNSTFDGLNIDNSKNKKKIQKGFQILYVLLFCSVMCGLFYYVYENVWLQRDNEMNEILKNSEHL
TIGFKVENAHDRILKTIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTG
SANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYT
ASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQIT
LDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQH
IEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAKKNL
123
453
1LF3
-1
329
P46925
A
1
1
331
15
7
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
TYR
178
A
TYR
180
A
LYS
186
A
LYS
188
A
SER
319
A
SER
321
A
ALA
325
A
ALA
327
A
TYR
309
A
TYR
311
A
ASP
314
A
ASP
316
A
LEU
153
A
LEU
155
A
TYR
157
A
TYR
159
A
GLY
166
A
GLY
168
A
ILE
170
A
ILE
172
A
ASP
4
A
ASP
6
A
PHE
11
A
PHE
13
A
MET
15
A
MET
17
A
VAL
22
A
VAL
24
A
GLN
27
A
GLN
29
A
ASP
34
A
ASP
36
A
GLY
122
A
GLY
124
A
GLY
125
A
GLY
127
A
LEU
40
A
LEU
42
A
PRO
43
A
PRO
45
A
LEU
96
A
LEU
98
A
ASP
107
A
ASP
109
A
THR
81
A
THR
83
A
VAL
93
A
VAL
95
A
GLU
67
A
GLU
69
A
ASN
76
A
ASN
78
A
THR
81
A
THR
83
A
VAL
93
A
VAL
95
A
MET
15
A
MET
17
A
VAL
22
A
VAL
24
A
LYS
265
A
LYS
267
A
LEU
268
A
LEU
270
A
PHE
257
A
PHE
259
A
THR
260
A
THR
262
A
GLN
194
A
GLN
196
A
HIS
200
A
HIS
202
A
MET
205
A
MET
207
A
VAL
213
A
VAL
215
A
THR
298
A
THR
300
A
LEU
301
A
LEU
303
A
ILE
220
A
ILE
222
A
VAL
222
A
VAL
224
A
ILE
289
A
ILE
291
A
GLY
291
A
GLY
293
A
VAL
246
A
VAL
248
A
LEU
248
A
LEU
250
A
LEU
284
A
LEU
286
A
LEU
287
A
LEU
289
A
LEU
274
A
LEU
276
A
HIS
276
A
HIS
278
BINDING SITE FOR RESIDUE EH5 A 332
A
EH5
332
Software
15
A
ILE
14
A
ILE
16
15
1_555
A
ILE
32
A
ILE
34
15
1_555
A
ASP
34
A
ASP
36
15
1_555
A
GLY
36
A
GLY
38
15
1_555
A
TYR
77
A
TYR
79
15
1_555
A
VAL
78
A
VAL
80
15
1_555
A
SER
79
A
SER
81
15
1_555
A
PHE
111
A
PHE
113
15
1_555
A
LEU
131
A
LEU
133
15
1_555
A
TYR
192
A
TYR
194
15
1_555
A
ASP
214
A
ASP
216
15
1_555
A
GLY
216
A
GLY
218
15
1_555
A
SER
218
A
SER
220
15
1_555
A
PHE
294
A
PHE
296
15
1_555
A
ILE
300
A
ILE
302
15
1_555
3
P 1 2 1