0.018723 0.000000 0.005056 0.000000 0.025060 0.000000 0.000000 0.000000 0.011332 0.00000 0.00000 0.00000 Asojo, O.A. Gulnik, S.V. Afonina, E. Yu, B. Ellman, J.A. Haque, T.S. Silva, A.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 105.11 90.00 53.411 39.904 91.409 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C46 H51 N3 O10 805.911 N-(1-BENZYL-3-{[3-(1,3-DIOXO-1,3-DIHYDRO-ISOINDOL-2-YL)-PROPIONYL]-[2-(HEXAHYDRO-BENZO[1,3]DIOXOL-5-YL)-ETHYL]-AMINO}-2-HYDROXY-PROPYL)-4-BENZYLOXY-3,5-DIMETHOXY-BENZAMIDE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 S C N 89 N C Y 90 N C Y 91 N C Y 92 N C Y 93 N C Y 94 N C Y 95 N C N 96 N N N 97 S C N 98 N C N 99 N N N 100 N O N 101 N C N 102 N C N 103 N C N 104 N C N 105 N O N 106 N C N 107 N C N 108 N O Y 109 N C Y 110 N C Y 111 N C Y 112 N C Y 113 N C Y 114 N C N 115 N C N 116 N N N 117 N C N 118 N O N 119 N O N 120 N C N 121 N C N 122 S C N 123 R C N 124 N C N 125 S C N 126 N O N 127 N C N 128 N O Y 129 N C Y 130 N C Y 131 N C Y 132 N C Y 133 N C Y 134 N C N 135 N O N 136 N O N 137 N O N 138 N C N 139 N C N 140 N C Y 141 N C Y 142 N C Y 143 N C Y 144 N C Y 145 N C Y 146 N C N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N O N 206 N N N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N C N 224 N C N 225 N O N 226 N O N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 N C N 239 N C N 240 N O N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N N Y 254 N C Y 255 N C Y 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N O N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 S C N 276 N C N 277 N C N 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N C N 300 N C N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C N 320 N C N 321 N C N 322 N C N 323 N N N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C N 345 N C N 346 N S N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C N 388 N C N 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N N N 401 S C N 402 N C N 403 N O N 404 N C N 405 N O N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N N N 415 S C N 416 N C N 417 N O N 418 R C N 419 N O N 420 N C N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N N N 432 S C N 433 N C N 434 N O N 435 N C Y 436 N C Y 437 N C Y 438 N C Y 439 N N Y 440 N C Y 441 N C Y 442 N C Y 443 N C Y 444 N C N 445 N O N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N N N 459 S C N 460 N C N 461 N O N 462 N C Y 463 N C Y 464 N C Y 465 N C Y 466 N C Y 467 N C Y 468 N C N 469 N O N 470 N O N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N N N 483 S C N 484 N C N 485 N O N 486 N C N 487 N C N 488 N C N 489 N O N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing Y 90 N doub Y 91 N sing Y 92 N sing N 93 N sing Y 94 N doub N 95 N sing Y 96 N doub N 97 N sing Y 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing Y 128 N doub Y 129 N sing N 130 N sing Y 131 N sing N 132 N sing Y 133 N doub N 134 N sing Y 135 N sing N 136 N sing Y 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing Y 165 N doub Y 166 N sing N 167 N sing Y 168 N sing N 169 N sing Y 170 N doub N 171 N sing Y 172 N sing Y 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing Y 188 N doub Y 189 N sing N 190 N sing Y 191 N sing N 192 N sing Y 193 N doub N 194 N sing Y 195 N sing Y 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing Y 256 N sing Y 257 N doub Y 258 N doub N 259 N sing Y 260 N sing N 261 N sing Y 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing Y 364 N doub Y 365 N sing Y 366 N sing N 367 N sing Y 368 N doub N 369 N sing Y 370 N doub N 371 N sing Y 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing Y 433 N doub Y 434 N sing Y 435 N sing N 436 N sing Y 437 N doub Y 438 N sing Y 439 N sing N 440 N sing Y 441 N sing Y 442 N doub N 443 N sing Y 444 N doub N 445 N sing Y 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N doub N 457 N sing N 458 N sing N 459 N sing N 460 N sing Y 461 N doub Y 462 N sing Y 463 N sing N 464 N sing Y 465 N doub N 466 N sing Y 467 N doub N 468 N sing Y 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N doub N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 327 173 181 10.1016/S0022-2836(03)00036-6 12614616 Novel uncomplexed and complexed structures of plasmepsin II, an aspartic protease from Plasmodium falciparum. 2003 10.2210/pdb1lf3/pdb pdb_00001lf3 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 IMAGE PLATE MAR scanner 345 mm plate SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 X9B NSLS 1.5418 SYNCHROTRON NSLS BEAMLINE X9B 37123.941 plasmepsin 2 3.4.23.39 Residues 123-453 1 man polymer 805.911 N-(1-BENZYL-3-{[3-(1,3-DIOXO-1,3-DIHYDRO-ISOINDOL-2-YL)-PROPIONYL]-[2-(HEXAHYDRO-BENZO[1,3]DIOXOL-5-YL)-ETHYL]-AMINO}-2-HYDROXY-PROPYL)-4-BENZYLOXY-3,5-DIMETHOXY-BENZAMIDE 1 syn non-polymer 18.015 water 52 nat water no no LGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYV SGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIK VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNH SVGIALAKKNL LGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYV SGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIK VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNH SVGIALAKKNL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n malaria parasite P. falciparum Plasmodium Escherichia sample 5833 Plasmodium falciparum 562 Escherichia coli plasmid PET 22B (NOVAGEN) 1 2.53 51.44 298K 298 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2002-10-10 1 1 2008-04-28 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CRYSTAL STRUCTURE OF PLASMEPSIN FROM P. FALCIPARUM IN COMPLEX WITH INHIBITOR RS367 CRYSTAL STRUCTURE OF PLASMEPSIN II FROM P FALCIPARUM IN COMPLEX WITH INHIBITOR RS370 STRUCTURE OF PLASMEPSIN II PLASMEPSIN II, A HEMOGLOBIN-DEGRADING ENZYME FROM PLASMODIUM FALCIPARUM, IN COMPLEX WITH PEPSTATIN A CRYSTAL STRUCTURE OF PLASMEPSIN IV FROM P. FALCIPARUM IN COMPLEX WITH PEPSTATIN A RCSB Y RCSB 2002-04-10 REL REL EH5 N-(1-BENZYL-3-{[3-(1,3-DIOXO-1,3-DIHYDRO-ISOINDOL-2-YL)-PROPIONYL]-[2-(HEXAHYDRO-BENZO[1,3]DIOXOL-5-YL)-ETHYL]-AMINO}-2-HYDROXY-PROPYL)-4-BENZYLOXY-3,5-DIMETHOXY-BENZAMIDE HOH water 1SME PDB ENTRY 1SME PDB experimental model EH5 332 2 EH5 EH5 332 A H2O 1 3 HOH HOH 333 A H2O 2 3 HOH HOH 334 A H2O 3 3 HOH HOH 335 A H2O 4 3 HOH HOH 336 A H2O 5 3 HOH HOH 337 A H2O 6 3 HOH HOH 338 A H2O 7 3 HOH HOH 339 A H2O 8 3 HOH HOH 340 A H2O 9 3 HOH HOH 341 A H2O 10 3 HOH HOH 342 A H2O 11 3 HOH HOH 343 A H2O 12 3 HOH HOH 344 A H2O 13 3 HOH HOH 345 A H2O 14 3 HOH HOH 346 A H2O 1 3 HOH HOH 347 A H2O 2 3 HOH HOH 348 A H2O 3 3 HOH HOH 349 A H2O 4 3 HOH HOH 350 A H2O 5 3 HOH HOH 351 A H2O 6 3 HOH HOH 352 A H2O 7 3 HOH HOH 353 A H2O 8 3 HOH HOH 354 A H2O 9 3 HOH HOH 355 A H2O 10 3 HOH HOH 356 A H2O 11 3 HOH HOH 357 A H2O 12 3 HOH HOH 358 A H2O 13 3 HOH HOH 359 A H2O 14 3 HOH HOH 360 A H2O 15 3 HOH HOH 361 A H2O 16 3 HOH HOH 362 A H2O 17 3 HOH HOH 363 A H2O 18 3 HOH HOH 364 A H2O 19 3 HOH HOH 365 A H2O 20 3 HOH HOH 366 A H2O 21 3 HOH HOH 367 A H2O 22 3 HOH HOH 368 A H2O 23 3 HOH HOH 369 A H2O 24 3 HOH HOH 370 A H2O 25 3 HOH HOH 371 A H2O 26 3 HOH HOH 372 A H2O 27 3 HOH HOH 373 A H2O 28 3 HOH HOH 374 A H2O 29 3 HOH HOH 375 A H2O 30 3 HOH HOH 376 A H2O 31 3 HOH HOH 377 A H2O 32 3 HOH HOH 378 A H2O 33 3 HOH HOH 379 A H2O 34 3 HOH HOH 380 A H2O 35 3 HOH HOH 381 A H2O 36 3 HOH HOH 382 A H2O 37 3 HOH HOH 383 A H2O 38 3 HOH HOH 384 A LEU 0 n 1 LEU -1 A GLY 0 n 2 GLY 0 A SER 1 n 3 SER 1 A SER 2 n 4 SER 2 A ASN 3 n 5 ASN 3 A ASP 4 n 6 ASP 4 A ASN 5 n 7 ASN 5 A ILE 6 n 8 ILE 6 A GLU 7 n 9 GLU 7 A LEU 8 n 10 LEU 8 A VAL 9 n 11 VAL 9 A ASP 10 n 12 ASP 10 A PHE 11 n 13 PHE 11 A GLN 12 n 14 GLN 12 A ASN 13 n 15 ASN 13 A ILE 14 n 16 ILE 14 A MET 15 n 17 MET 15 A PHE 16 n 18 PHE 16 A TYR 17 n 19 TYR 17 A GLY 18 n 20 GLY 18 A ASP 19 n 21 ASP 19 A ALA 20 n 22 ALA 20 A GLU 21 n 23 GLU 21 A VAL 22 n 24 VAL 22 A GLY 23 n 25 GLY 23 A ASP 24 n 26 ASP 24 A ASN 25 n 27 ASN 25 A GLN 26 n 28 GLN 26 A GLN 27 n 29 GLN 27 A PRO 28 n 30 PRO 28 A PHE 29 n 31 PHE 29 A THR 30 n 32 THR 30 A PHE 31 n 33 PHE 31 A ILE 32 n 34 ILE 32 A LEU 33 n 35 LEU 33 A ASP 34 n 36 ASP 34 A THR 35 n 37 THR 35 A GLY 36 n 38 GLY 36 A SER 37 n 39 SER 37 A ALA 38 n 40 ALA 38 A ASN 39 n 41 ASN 39 A LEU 40 n 42 LEU 40 A TRP 41 n 43 TRP 41 A VAL 42 n 44 VAL 42 A PRO 43 n 45 PRO 43 A SER 44 n 46 SER 44 A VAL 45 n 47 VAL 45 A LYS 46 n 48 LYS 46 A CYS 47 n 49 CYS 47 A THR 48 n 50 THR 48 A THR 49 n 51 THR 49 A ALA 50 n 52 ALA 50 A GLY 51 n 53 GLY 51 A CYS 52 n 54 CYS 52 A LEU 53 n 55 LEU 53 A THR 54 n 56 THR 54 A LYS 55 n 57 LYS 55 A HIS 56 n 58 HIS 56 A LEU 57 n 59 LEU 57 A TYR 58 n 60 TYR 58 A ASP 59 n 61 ASP 59 A SER 60 n 62 SER 60 A SER 61 n 63 SER 61 A LYS 62 n 64 LYS 62 A SER 63 n 65 SER 63 A ARG 64 n 66 ARG 64 A THR 65 n 67 THR 65 A TYR 66 n 68 TYR 66 A GLU 67 n 69 GLU 67 A LYS 68 n 70 LYS 68 A ASP 69 n 71 ASP 69 A GLY 70 n 72 GLY 70 A THR 71 n 73 THR 71 A LYS 72 n 74 LYS 72 A VAL 73 n 75 VAL 73 A GLU 74 n 76 GLU 74 A MET 75 n 77 MET 75 A ASN 76 n 78 ASN 76 A TYR 77 n 79 TYR 77 A VAL 78 n 80 VAL 78 A SER 79 n 81 SER 79 A GLY 80 n 82 GLY 80 A THR 81 n 83 THR 81 A VAL 82 n 84 VAL 82 A SER 83 n 85 SER 83 A GLY 84 n 86 GLY 84 A PHE 85 n 87 PHE 85 A PHE 86 n 88 PHE 86 A SER 87 n 89 SER 87 A LYS 88 n 90 LYS 88 A ASP 89 n 91 ASP 89 A LEU 90 n 92 LEU 90 A VAL 91 n 93 VAL 91 A THR 92 n 94 THR 92 A VAL 93 n 95 VAL 93 A GLY 94 n 96 GLY 94 A ASN 95 n 97 ASN 95 A LEU 96 n 98 LEU 96 A SER 97 n 99 SER 97 A LEU 98 n 100 LEU 98 A PRO 99 n 101 PRO 99 A TYR 100 n 102 TYR 100 A LYS 101 n 103 LYS 101 A PHE 102 n 104 PHE 102 A ILE 103 n 105 ILE 103 A GLU 104 n 106 GLU 104 A VAL 105 n 107 VAL 105 A ILE 106 n 108 ILE 106 A ASP 107 n 109 ASP 107 A THR 108 n 110 THR 108 A ASN 109 n 111 ASN 109 A GLY 110 n 112 GLY 110 A PHE 111 n 113 PHE 111 A GLU 112 n 114 GLU 112 A PRO 113 n 115 PRO 113 A THR 114 n 116 THR 114 A TYR 115 n 117 TYR 115 A THR 116 n 118 THR 116 A ALA 117 n 119 ALA 117 A SER 118 n 120 SER 118 A THR 119 n 121 THR 119 A PHE 120 n 122 PHE 120 A ASP 121 n 123 ASP 121 A GLY 122 n 124 GLY 122 A ILE 123 n 125 ILE 123 A LEU 124 n 126 LEU 124 A GLY 125 n 127 GLY 125 A LEU 126 n 128 LEU 126 A GLY 127 n 129 GLY 127 A TRP 128 n 130 TRP 128 A LYS 129 n 131 LYS 129 A ASP 130 n 132 ASP 130 A LEU 131 n 133 LEU 131 A SER 132 n 134 SER 132 A ILE 133 n 135 ILE 133 A GLY 134 n 136 GLY 134 A SER 135 n 137 SER 135 A VAL 136 n 138 VAL 136 A ASP 137 n 139 ASP 137 A PRO 138 n 140 PRO 138 A ILE 139 n 141 ILE 139 A VAL 140 n 142 VAL 140 A VAL 141 n 143 VAL 141 A GLU 142 n 144 GLU 142 A LEU 143 n 145 LEU 143 A LYS 144 n 146 LYS 144 A ASN 145 n 147 ASN 145 A GLN 146 n 148 GLN 146 A ASN 147 n 149 ASN 147 A LYS 148 n 150 LYS 148 A ILE 149 n 151 ILE 149 A GLU 150 n 152 GLU 150 A ASN 151 n 153 ASN 151 A ALA 152 n 154 ALA 152 A LEU 153 n 155 LEU 153 A PHE 154 n 156 PHE 154 A THR 155 n 157 THR 155 A PHE 156 n 158 PHE 156 A TYR 157 n 159 TYR 157 A LEU 158 n 160 LEU 158 A PRO 159 n 161 PRO 159 A VAL 160 n 162 VAL 160 A HIS 161 n 163 HIS 161 A ASP 162 n 164 ASP 162 A LYS 163 n 165 LYS 163 A HIS 164 n 166 HIS 164 A THR 165 n 167 THR 165 A GLY 166 n 168 GLY 166 A PHE 167 n 169 PHE 167 A LEU 168 n 170 LEU 168 A THR 169 n 171 THR 169 A ILE 170 n 172 ILE 170 A GLY 171 n 173 GLY 171 A GLY 172 n 174 GLY 172 A ILE 173 n 175 ILE 173 A GLU 174 n 176 GLU 174 A GLU 175 n 177 GLU 175 A ARG 176 n 178 ARG 176 A PHE 177 n 179 PHE 177 A TYR 178 n 180 TYR 178 A GLU 179 n 181 GLU 179 A GLY 180 n 182 GLY 180 A PRO 181 n 183 PRO 181 A LEU 182 n 184 LEU 182 A THR 183 n 185 THR 183 A TYR 184 n 186 TYR 184 A GLU 185 n 187 GLU 185 A LYS 186 n 188 LYS 186 A LEU 187 n 189 LEU 187 A ASN 188 n 190 ASN 188 A HIS 189 n 191 HIS 189 A ASP 190 n 192 ASP 190 A LEU 191 n 193 LEU 191 A TYR 192 n 194 TYR 192 A TRP 193 n 195 TRP 193 A GLN 194 n 196 GLN 194 A ILE 195 n 197 ILE 195 A THR 196 n 198 THR 196 A LEU 197 n 199 LEU 197 A ASP 198 n 200 ASP 198 A ALA 199 n 201 ALA 199 A HIS 200 n 202 HIS 200 A VAL 201 n 203 VAL 201 A GLY 202 n 204 GLY 202 A ASN 203 n 205 ASN 203 A ILE 204 n 206 ILE 204 A MET 205 n 207 MET 205 A LEU 206 n 208 LEU 206 A GLU 207 n 209 GLU 207 A LYS 208 n 210 LYS 208 A ALA 209 n 211 ALA 209 A ASN 210 n 212 ASN 210 A CYS 211 n 213 CYS 211 A ILE 212 n 214 ILE 212 A VAL 213 n 215 VAL 213 A ASP 214 n 216 ASP 214 A SER 215 n 217 SER 215 A GLY 216 n 218 GLY 216 A THR 217 n 219 THR 217 A SER 218 n 220 SER 218 A ALA 219 n 221 ALA 219 A ILE 220 n 222 ILE 220 A THR 221 n 223 THR 221 A VAL 222 n 224 VAL 222 A PRO 223 n 225 PRO 223 A THR 224 n 226 THR 224 A ASP 225 n 227 ASP 225 A PHE 226 n 228 PHE 226 A LEU 227 n 229 LEU 227 A ASN 228 n 230 ASN 228 A LYS 229 n 231 LYS 229 A MET 230 n 232 MET 230 A LEU 231 n 233 LEU 231 A GLN 232 n 234 GLN 232 A ASN 233 n 235 ASN 233 A LEU 234 n 236 LEU 234 A ASP 235 n 237 ASP 235 A VAL 236 n 238 VAL 236 A ILE 237 n 239 ILE 237 A LYS 238 n 240 LYS 238 A VAL 239 n 241 VAL 239 A PRO 240 n 242 PRO 240 A PHE 241 n 243 PHE 241 A LEU 242 n 244 LEU 242 A PRO 243 n 245 PRO 243 A PHE 244 n 246 PHE 244 A TYR 245 n 247 TYR 245 A VAL 246 n 248 VAL 246 A THR 247 n 249 THR 247 A LEU 248 n 250 LEU 248 A CYS 249 n 251 CYS 249 A ASN 250 n 252 ASN 250 A ASN 251 n 253 ASN 251 A SER 252 n 254 SER 252 A LYS 253 n 255 LYS 253 A LEU 254 n 256 LEU 254 A PRO 255 n 257 PRO 255 A THR 256 n 258 THR 256 A PHE 257 n 259 PHE 257 A GLU 258 n 260 GLU 258 A PHE 259 n 261 PHE 259 A THR 260 n 262 THR 260 A SER 261 n 263 SER 261 A GLU 262 n 264 GLU 262 A ASN 263 n 265 ASN 263 A GLY 264 n 266 GLY 264 A LYS 265 n 267 LYS 265 A TYR 266 n 268 TYR 266 A THR 267 n 269 THR 267 A LEU 268 n 270 LEU 268 A GLU 269 n 271 GLU 269 A PRO 270 n 272 PRO 270 A GLU 271 n 273 GLU 271 A TYR 272 n 274 TYR 272 A TYR 273 n 275 TYR 273 A LEU 274 n 276 LEU 274 A GLN 275 n 277 GLN 275 A HIS 276 n 278 HIS 276 A ILE 277 n 279 ILE 277 A GLU 278 n 280 GLU 278 A ASP 279 n 281 ASP 279 A VAL 280 n 282 VAL 280 A GLY 281 n 283 GLY 281 A PRO 282 n 284 PRO 282 A GLY 283 n 285 GLY 283 A LEU 284 n 286 LEU 284 A CYS 285 n 287 CYS 285 A MET 286 n 288 MET 286 A LEU 287 n 289 LEU 287 A ASN 288 n 290 ASN 288 A ILE 289 n 291 ILE 289 A ILE 290 n 292 ILE 290 A GLY 291 n 293 GLY 291 A LEU 292 n 294 LEU 292 A ASP 293 n 295 ASP 293 A PHE 294 n 296 PHE 294 A PRO 295 n 297 PRO 295 A VAL 296 n 298 VAL 296 A PRO 297 n 299 PRO 297 A THR 298 n 300 THR 298 A PHE 299 n 301 PHE 299 A ILE 300 n 302 ILE 300 A LEU 301 n 303 LEU 301 A GLY 302 n 304 GLY 302 A ASP 303 n 305 ASP 303 A PRO 304 n 306 PRO 304 A PHE 305 n 307 PHE 305 A MET 306 n 308 MET 306 A ARG 307 n 309 ARG 307 A LYS 308 n 310 LYS 308 A TYR 309 n 311 TYR 309 A PHE 310 n 312 PHE 310 A THR 311 n 313 THR 311 A VAL 312 n 314 VAL 312 A PHE 313 n 315 PHE 313 A ASP 314 n 316 ASP 314 A TYR 315 n 317 TYR 315 A ASP 316 n 318 ASP 316 A ASN 317 n 319 ASN 317 A HIS 318 n 320 HIS 318 A SER 319 n 321 SER 319 A VAL 320 n 322 VAL 320 A GLY 321 n 323 GLY 321 A ILE 322 n 324 ILE 322 A ALA 323 n 325 ALA 323 A LEU 324 n 326 LEU 324 A ALA 325 n 327 ALA 325 A LYS 326 n 328 LYS 326 A LYS 327 n 329 LYS 327 A ASN 328 n 330 ASN 328 A LEU 329 n 331 LEU 329 A author_defined_assembly 1 monomeric software_defined_assembly PISA,PQS 2 dimeric 5660 -46 26420 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_656 -x+1,y,-z+1 crystal symmetry operation 29.5831406976 0.0000000000 88.2487303142 A N GLU 185 A N GLU 187 A O VAL 320 A O VAL 322 A O ALA 323 A O ALA 325 A N PHE 310 A N PHE 312 A N PHE 313 A N PHE 315 A O PHE 154 A O PHE 156 A N TYR 157 A N TYR 159 A O PHE 167 A O PHE 169 A N ILE 170 A N ILE 172 A O ASP 4 A O ASP 6 A N PHE 11 A N PHE 13 A O MET 15 A O MET 17 A O VAL 22 A O VAL 24 A N GLN 27 A N GLN 29 A O THR 30 A O THR 32 A N GLY 122 A N GLY 124 A O ILE 123 A O ILE 125 A N TRP 41 A N TRP 43 A O LEU 40 A O LEU 42 A N ILE 103 A N ILE 105 A N ILE 106 A N ILE 108 A O SER 83 A O SER 85 A O LYS 88 A O LYS 90 A N GLU 67 A N GLU 69 A N MET 75 A N MET 77 A O VAL 82 A O VAL 84 A O THR 92 A O THR 94 A N GLU 21 A N GLU 23 A O LEU 268 A O LEU 270 A N PHE 257 A N PHE 259 A O THR 260 A O THR 262 A N ASP 198 A N ASP 200 A N ALA 199 A N ALA 201 A O LEU 206 A O LEU 208 A O ASN 210 A O ASN 212 A N PHE 299 A N PHE 301 A O ILE 300 A O ILE 302 A N THR 221 A N THR 223 A N VAL 222 A N VAL 224 A O ILE 290 A O ILE 292 A O THR 247 A O THR 249 A N CYS 285 A N CYS 287 A N MET 286 A N MET 288 A O GLN 275 A O GLN 277 1 A C15 EH5 332 PLANAR 1 A C19 EH5 332 PLANAR 1 A C27 EH5 332 PLANAR 1 19.76 1.50 119.30 139.06 A A A C N CA LEU PRO PRO 242 243 243 Y 1 -20.96 2.10 128.40 107.44 A A A C N CD LEU PRO PRO 242 243 243 Y 1 A ASP 69 -131.03 -62.34 1 A TYR 77 -111.81 -163.40 1 A ASN 95 -154.94 10.85 1 A TYR 115 -50.19 -70.88 1 A ASP 162 80.37 3.44 1 A LEU 191 -121.75 -79.54 1 A VAL 201 -123.53 -107.69 1 A ASN 233 68.49 -47.82 1 A ASP 235 -54.19 95.89 1 A VAL 239 77.16 56.97 1 A PRO 240 -46.77 -129.18 1 A LEU 242 -152.14 53.52 1 A PRO 243 13.94 173.85 1 A PHE 244 77.05 -134.40 1 A CYS 249 -43.83 -19.95 1 A SER 261 -131.63 -159.49 1 A ILE 277 -161.98 38.15 1 A PRO 282 -44.75 88.67 1 A ASN 288 -90.58 50.39 1 A PRO 297 -39.73 114.58 1 A HIS 318 24.24 70.00 1 A ASN 328 -151.62 12.35 PROTEIN_REP.PARAM PROTEIN.TOP 31.4 -1.71 0.00 1.13 6.67 0.00 -4.96 0.224 0.011 0.178 0.178 2.70 17.76 447 9125 4.9 87.1 RANDOM 1165627.48 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1SME FLAT MODEL 50.7997 0.278511 0.33 0.27 5.00 0.50 0.39 2.70 17.76 52 2730 59 0 2619 0.007 1.5 26.2 0.86 0.318 0.040 0.276 2.87 64 1313 6 4.6 80.4 62.3 2.7 20 1LF3 9126 2.0 0.066 0.06 1 12.1 3.0 93 0.32 2.7 2.9 2.0 0.28 1 3.0 90 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 0.9 CRYSTAL STRUCTURE OF PLASMEPSIN II FROM P FALCIPARUM IN COMPLEX WITH INHIBITOR EH58 1 N N 2 N N 3 N N A ALA 50 A ALA 52 HELX_P A LYS 55 A LYS 57 5 1 6 A ASP 59 A ASP 61 HELX_P A SER 63 A SER 65 5 2 5 A PRO 113 A PRO 115 HELX_P A SER 118 A SER 120 1 3 6 A TRP 128 A TRP 130 HELX_P A SER 132 A SER 134 5 4 5 A PRO 138 A PRO 140 HELX_P A GLN 146 A GLN 148 1 5 9 A PRO 223 A PRO 225 HELX_P A GLN 232 A GLN 234 1 6 10 A GLU 269 A GLU 271 HELX_P A TYR 273 A TYR 275 1 7 5 A GLU 278 A GLU 280 HELX_P A GLY 281 A GLY 283 5 8 4 A GLY 302 A GLY 304 HELX_P A LYS 308 A LYS 310 1 9 7 disulf 2.033 A CYS 47 A SG CYS 49 1_555 A CYS 52 A SG CYS 54 1_555 disulf 2.033 A CYS 249 A SG CYS 251 1_555 A CYS 285 A SG CYS 287 1_555 HYDROLASE plasmepsin, plasmodium falciparum, aspartic protease, HYDROLASE A GLU 112 A GLU 114 1 A PRO 113 A PRO 115 0.19 PLM2_PLAFA UNP 1 1 P46925 MDITVREHDFKHGFIKSNSTFDGLNIDNSKNKKKIQKGFQILYVLLFCSVMCGLFYYVYENVWLQRDNEMNEILKNSEHL TIGFKVENAHDRILKTIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTG SANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYT ASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQIT LDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQH IEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAKKNL 123 453 1LF3 -1 329 P46925 A 1 1 331 15 7 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A TYR 178 A TYR 180 A LYS 186 A LYS 188 A SER 319 A SER 321 A ALA 325 A ALA 327 A TYR 309 A TYR 311 A ASP 314 A ASP 316 A LEU 153 A LEU 155 A TYR 157 A TYR 159 A GLY 166 A GLY 168 A ILE 170 A ILE 172 A ASP 4 A ASP 6 A PHE 11 A PHE 13 A MET 15 A MET 17 A VAL 22 A VAL 24 A GLN 27 A GLN 29 A ASP 34 A ASP 36 A GLY 122 A GLY 124 A GLY 125 A GLY 127 A LEU 40 A LEU 42 A PRO 43 A PRO 45 A LEU 96 A LEU 98 A ASP 107 A ASP 109 A THR 81 A THR 83 A VAL 93 A VAL 95 A GLU 67 A GLU 69 A ASN 76 A ASN 78 A THR 81 A THR 83 A VAL 93 A VAL 95 A MET 15 A MET 17 A VAL 22 A VAL 24 A LYS 265 A LYS 267 A LEU 268 A LEU 270 A PHE 257 A PHE 259 A THR 260 A THR 262 A GLN 194 A GLN 196 A HIS 200 A HIS 202 A MET 205 A MET 207 A VAL 213 A VAL 215 A THR 298 A THR 300 A LEU 301 A LEU 303 A ILE 220 A ILE 222 A VAL 222 A VAL 224 A ILE 289 A ILE 291 A GLY 291 A GLY 293 A VAL 246 A VAL 248 A LEU 248 A LEU 250 A LEU 284 A LEU 286 A LEU 287 A LEU 289 A LEU 274 A LEU 276 A HIS 276 A HIS 278 BINDING SITE FOR RESIDUE EH5 A 332 A EH5 332 Software 15 A ILE 14 A ILE 16 15 1_555 A ILE 32 A ILE 34 15 1_555 A ASP 34 A ASP 36 15 1_555 A GLY 36 A GLY 38 15 1_555 A TYR 77 A TYR 79 15 1_555 A VAL 78 A VAL 80 15 1_555 A SER 79 A SER 81 15 1_555 A PHE 111 A PHE 113 15 1_555 A LEU 131 A LEU 133 15 1_555 A TYR 192 A TYR 194 15 1_555 A ASP 214 A ASP 216 15 1_555 A GLY 216 A GLY 218 15 1_555 A SER 218 A SER 220 15 1_555 A PHE 294 A PHE 296 15 1_555 A ILE 300 A ILE 302 15 1_555 3 P 1 2 1