0.010030
0.000000
0.006489
0.000000
0.016639
0.000000
0.000000
0.000000
0.013190
0.00000
0.00000
0.00000
Pylypenko, O.
Zerbe, K.
Vitali, F.
Zhang, W.
Vrijbloed, J.W.
Robinson, J.A.
Schlichting, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
122.90
90.00
99.700
60.100
90.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
C
Y
141
N
C
Y
142
N
C
Y
143
N
C
Y
144
N
C
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
Y
175
N
N
N
176
N
N
Y
177
N
N
N
178
N
N
N
179
N
FE
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
S
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
N
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
S
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
R
C
N
384
N
O
N
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
N
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
N
434
N
O
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
N
C
N
452
N
C
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
Y
141
N
doub
Y
142
N
sing
Y
143
N
sing
N
144
N
sing
Y
145
N
doub
N
146
N
sing
Y
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
sing
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
Y
222
N
sing
Y
223
N
doub
Y
224
N
doub
N
225
N
sing
Y
226
N
sing
N
227
N
sing
Y
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
doub
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
47476
47485
10.1074/jbc.M206342200
12207020
Crystal Structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction during Vancomycin Biosynthesis.
2002
GE
Angew.Chem.Int.Ed.Engl.
ACIEAY
0179
0570-0833
40
4688
4691
10.1002/1521-3773(20011217)40:24<4688::AID-ANIE4688>3.0.CO;2-M
The Biosynthesis of Vancomycin-Type Glycopeptide Antibiotics - The Order of the Cyclization Steps
2001
10.2210/pdb1lgf/pdb
pdb_00001lgf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
ADSC QUANTUM 4
DIAMOND
SINGLE WAVELENGTH
M
x-ray
1
0.93
1.0
ID14-1
ESRF
0.93
SYNCHROTRON
ESRF BEAMLINE ID14-1
44429.711
P450 monooxygenase
1
man
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
18.015
water
271
nat
water
OxyB
no
no
MSEDDPRPLHIRRQGLDPADELLAAGALTRVTIGSGADAETHWMATAHAVVRQVMGDHQQFSTRRRWDPRDEIGGKGIFR
PRELVGNLMDYDPPEHTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCELVGVPR
DDRDMFMKLCHGHLDASLSQKRRAALGDKFSRYLLAMIARERKEPGEGMIGAVVAEYGDDATDEELRGFCVQVMLAGDDN
ISGMIGLGVLAMLRHPEQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPA
LAPDVDRLDVTREPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYGLTELMVAW
MSEDDPRPLHIRRQGLDPADELLAAGALTRVTIGSGADAETHWMATAHAVVRQVMGDHQQFSTRRRWDPRDEIGGKGIFR
PRELVGNLMDYDPPEHTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCELVGVPR
DDRDMFMKLCHGHLDASLSQKRRAALGDKFSRYLLAMIARERKEPGEGMIGAVVAEYGDDATDEELRGFCVQVMLAGDDN
ISGMIGLGVLAMLRHPEQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPA
LAPDVDRLDVTREPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYGLTELMVAW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Amycolatopsis
Escherichia
sample
31958
Amycolatopsis orientalis
562
Escherichia coli
PLASMID
pET14b
1
2.42
48.76
VAPOR DIFFUSION, HANGING DROP
7.5
Ammonium Sulphate, K-Hepes, DTE, pottasium chloride, SP1066, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-12-11
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
1
4
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1LKF contains crystal structure of the same protein without the putative substrate peptide SP1066
1LG9 contains crystal structure of the same protein (precipitant is PEG3350)
RCSB
Y
PDBJ
2002-04-15
REL
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
HOH
water
1LFK
PDB ENTRY 1LFK
PDB
experimental model
HEM
430
2
HEM
HEM
430
A
HOH
1
3
HOH
HOH
431
A
HOH
2
3
HOH
HOH
432
A
HOH
3
3
HOH
HOH
433
A
HOH
4
3
HOH
HOH
434
A
HOH
5
3
HOH
HOH
435
A
HOH
6
3
HOH
HOH
436
A
HOH
7
3
HOH
HOH
437
A
HOH
8
3
HOH
HOH
438
A
HOH
9
3
HOH
HOH
439
A
HOH
10
3
HOH
HOH
440
A
HOH
11
3
HOH
HOH
441
A
HOH
12
3
HOH
HOH
442
A
HOH
13
3
HOH
HOH
443
A
HOH
14
3
HOH
HOH
444
A
HOH
15
3
HOH
HOH
445
A
HOH
16
3
HOH
HOH
446
A
HOH
17
3
HOH
HOH
447
A
HOH
18
3
HOH
HOH
448
A
HOH
19
3
HOH
HOH
449
A
HOH
20
3
HOH
HOH
450
A
HOH
21
3
HOH
HOH
451
A
HOH
22
3
HOH
HOH
452
A
HOH
23
3
HOH
HOH
453
A
HOH
24
3
HOH
HOH
454
A
HOH
25
3
HOH
HOH
455
A
HOH
26
3
HOH
HOH
456
A
HOH
27
3
HOH
HOH
457
A
HOH
28
3
HOH
HOH
458
A
HOH
29
3
HOH
HOH
459
A
HOH
30
3
HOH
HOH
460
A
HOH
31
3
HOH
HOH
461
A
HOH
32
3
HOH
HOH
462
A
HOH
33
3
HOH
HOH
463
A
HOH
34
3
HOH
HOH
464
A
HOH
35
3
HOH
HOH
465
A
HOH
36
3
HOH
HOH
466
A
HOH
37
3
HOH
HOH
467
A
HOH
38
3
HOH
HOH
468
A
HOH
39
3
HOH
HOH
469
A
HOH
40
3
HOH
HOH
470
A
HOH
41
3
HOH
HOH
471
A
HOH
42
3
HOH
HOH
472
A
HOH
43
3
HOH
HOH
473
A
HOH
44
3
HOH
HOH
474
A
HOH
45
3
HOH
HOH
475
A
HOH
46
3
HOH
HOH
476
A
HOH
47
3
HOH
HOH
477
A
HOH
48
3
HOH
HOH
478
A
HOH
49
3
HOH
HOH
479
A
HOH
50
3
HOH
HOH
480
A
HOH
51
3
HOH
HOH
481
A
HOH
52
3
HOH
HOH
482
A
HOH
53
3
HOH
HOH
483
A
HOH
54
3
HOH
HOH
484
A
HOH
55
3
HOH
HOH
485
A
HOH
56
3
HOH
HOH
486
A
HOH
57
3
HOH
HOH
487
A
HOH
58
3
HOH
HOH
488
A
HOH
59
3
HOH
HOH
489
A
HOH
60
3
HOH
HOH
490
A
HOH
61
3
HOH
HOH
491
A
HOH
62
3
HOH
HOH
492
A
HOH
63
3
HOH
HOH
493
A
HOH
64
3
HOH
HOH
494
A
HOH
65
3
HOH
HOH
495
A
HOH
66
3
HOH
HOH
496
A
HOH
67
3
HOH
HOH
497
A
HOH
68
3
HOH
HOH
498
A
HOH
69
3
HOH
HOH
499
A
HOH
70
3
HOH
HOH
500
A
HOH
71
3
HOH
HOH
501
A
HOH
72
3
HOH
HOH
502
A
HOH
73
3
HOH
HOH
503
A
HOH
74
3
HOH
HOH
504
A
HOH
75
3
HOH
HOH
505
A
HOH
76
3
HOH
HOH
506
A
HOH
77
3
HOH
HOH
507
A
HOH
78
3
HOH
HOH
508
A
HOH
79
3
HOH
HOH
509
A
HOH
80
3
HOH
HOH
510
A
HOH
81
3
HOH
HOH
511
A
HOH
82
3
HOH
HOH
512
A
HOH
83
3
HOH
HOH
513
A
HOH
84
3
HOH
HOH
514
A
HOH
85
3
HOH
HOH
515
A
HOH
86
3
HOH
HOH
516
A
HOH
87
3
HOH
HOH
517
A
HOH
88
3
HOH
HOH
518
A
HOH
89
3
HOH
HOH
519
A
HOH
90
3
HOH
HOH
520
A
HOH
91
3
HOH
HOH
521
A
HOH
92
3
HOH
HOH
522
A
HOH
93
3
HOH
HOH
523
A
HOH
94
3
HOH
HOH
524
A
HOH
95
3
HOH
HOH
525
A
HOH
96
3
HOH
HOH
526
A
HOH
97
3
HOH
HOH
527
A
HOH
98
3
HOH
HOH
528
A
HOH
99
3
HOH
HOH
529
A
HOH
100
3
HOH
HOH
530
A
HOH
101
3
HOH
HOH
531
A
HOH
102
3
HOH
HOH
532
A
HOH
103
3
HOH
HOH
533
A
HOH
104
3
HOH
HOH
534
A
HOH
105
3
HOH
HOH
535
A
HOH
106
3
HOH
HOH
536
A
HOH
107
3
HOH
HOH
537
A
HOH
108
3
HOH
HOH
538
A
HOH
109
3
HOH
HOH
539
A
HOH
110
3
HOH
HOH
540
A
HOH
111
3
HOH
HOH
541
A
HOH
112
3
HOH
HOH
542
A
HOH
113
3
HOH
HOH
543
A
HOH
114
3
HOH
HOH
544
A
HOH
115
3
HOH
HOH
545
A
HOH
116
3
HOH
HOH
546
A
HOH
117
3
HOH
HOH
547
A
HOH
118
3
HOH
HOH
548
A
HOH
119
3
HOH
HOH
549
A
HOH
120
3
HOH
HOH
550
A
HOH
121
3
HOH
HOH
551
A
HOH
122
3
HOH
HOH
552
A
HOH
123
3
HOH
HOH
553
A
HOH
124
3
HOH
HOH
554
A
HOH
125
3
HOH
HOH
555
A
HOH
126
3
HOH
HOH
556
A
HOH
127
3
HOH
HOH
557
A
HOH
128
3
HOH
HOH
558
A
HOH
129
3
HOH
HOH
559
A
HOH
130
3
HOH
HOH
560
A
HOH
131
3
HOH
HOH
561
A
HOH
132
3
HOH
HOH
562
A
HOH
133
3
HOH
HOH
563
A
HOH
134
3
HOH
HOH
564
A
HOH
135
3
HOH
HOH
565
A
HOH
136
3
HOH
HOH
566
A
HOH
137
3
HOH
HOH
567
A
HOH
138
3
HOH
HOH
568
A
HOH
139
3
HOH
HOH
569
A
HOH
140
3
HOH
HOH
570
A
HOH
141
3
HOH
HOH
571
A
HOH
142
3
HOH
HOH
572
A
HOH
143
3
HOH
HOH
573
A
HOH
144
3
HOH
HOH
574
A
HOH
145
3
HOH
HOH
575
A
HOH
146
3
HOH
HOH
576
A
HOH
147
3
HOH
HOH
577
A
HOH
148
3
HOH
HOH
578
A
HOH
149
3
HOH
HOH
579
A
HOH
150
3
HOH
HOH
580
A
HOH
151
3
HOH
HOH
581
A
HOH
152
3
HOH
HOH
582
A
HOH
153
3
HOH
HOH
583
A
HOH
154
3
HOH
HOH
584
A
HOH
155
3
HOH
HOH
585
A
HOH
156
3
HOH
HOH
586
A
HOH
157
3
HOH
HOH
587
A
HOH
158
3
HOH
HOH
588
A
HOH
159
3
HOH
HOH
589
A
HOH
160
3
HOH
HOH
590
A
HOH
161
3
HOH
HOH
591
A
HOH
162
3
HOH
HOH
592
A
HOH
163
3
HOH
HOH
593
A
HOH
164
3
HOH
HOH
594
A
HOH
165
3
HOH
HOH
595
A
HOH
166
3
HOH
HOH
596
A
HOH
167
3
HOH
HOH
597
A
HOH
168
3
HOH
HOH
598
A
HOH
169
3
HOH
HOH
599
A
HOH
170
3
HOH
HOH
600
A
HOH
171
3
HOH
HOH
601
A
HOH
172
3
HOH
HOH
602
A
HOH
173
3
HOH
HOH
603
A
HOH
174
3
HOH
HOH
604
A
HOH
175
3
HOH
HOH
605
A
HOH
176
3
HOH
HOH
606
A
HOH
177
3
HOH
HOH
607
A
HOH
178
3
HOH
HOH
608
A
HOH
179
3
HOH
HOH
609
A
HOH
180
3
HOH
HOH
610
A
HOH
181
3
HOH
HOH
611
A
HOH
182
3
HOH
HOH
612
A
HOH
183
3
HOH
HOH
613
A
HOH
184
3
HOH
HOH
614
A
HOH
185
3
HOH
HOH
615
A
HOH
186
3
HOH
HOH
616
A
HOH
187
3
HOH
HOH
617
A
HOH
188
3
HOH
HOH
618
A
HOH
189
3
HOH
HOH
619
A
HOH
190
3
HOH
HOH
620
A
HOH
191
3
HOH
HOH
621
A
HOH
192
3
HOH
HOH
622
A
HOH
193
3
HOH
HOH
623
A
HOH
194
3
HOH
HOH
624
A
HOH
195
3
HOH
HOH
625
A
HOH
196
3
HOH
HOH
626
A
HOH
197
3
HOH
HOH
627
A
HOH
198
3
HOH
HOH
628
A
HOH
199
3
HOH
HOH
629
A
HOH
200
3
HOH
HOH
630
A
HOH
201
3
HOH
HOH
631
A
HOH
202
3
HOH
HOH
632
A
HOH
203
3
HOH
HOH
633
A
HOH
204
3
HOH
HOH
634
A
HOH
205
3
HOH
HOH
635
A
HOH
206
3
HOH
HOH
636
A
HOH
207
3
HOH
HOH
637
A
HOH
208
3
HOH
HOH
638
A
HOH
209
3
HOH
HOH
639
A
HOH
210
3
HOH
HOH
640
A
HOH
211
3
HOH
HOH
641
A
HOH
212
3
HOH
HOH
642
A
HOH
213
3
HOH
HOH
643
A
HOH
214
3
HOH
HOH
644
A
HOH
215
3
HOH
HOH
645
A
HOH
216
3
HOH
HOH
646
A
HOH
217
3
HOH
HOH
647
A
HOH
218
3
HOH
HOH
648
A
HOH
219
3
HOH
HOH
649
A
HOH
220
3
HOH
HOH
650
A
HOH
221
3
HOH
HOH
651
A
HOH
222
3
HOH
HOH
652
A
HOH
223
3
HOH
HOH
653
A
HOH
224
3
HOH
HOH
654
A
HOH
225
3
HOH
HOH
655
A
HOH
226
3
HOH
HOH
656
A
HOH
227
3
HOH
HOH
657
A
HOH
228
3
HOH
HOH
658
A
HOH
229
3
HOH
HOH
659
A
HOH
230
3
HOH
HOH
660
A
HOH
231
3
HOH
HOH
661
A
HOH
232
3
HOH
HOH
662
A
HOH
233
3
HOH
HOH
663
A
HOH
234
3
HOH
HOH
664
A
HOH
235
3
HOH
HOH
665
A
HOH
236
3
HOH
HOH
666
A
HOH
237
3
HOH
HOH
667
A
HOH
238
3
HOH
HOH
668
A
HOH
239
3
HOH
HOH
669
A
HOH
240
3
HOH
HOH
670
A
HOH
241
3
HOH
HOH
671
A
HOH
242
3
HOH
HOH
672
A
HOH
243
3
HOH
HOH
673
A
HOH
244
3
HOH
HOH
674
A
HOH
245
3
HOH
HOH
675
A
HOH
246
3
HOH
HOH
676
A
HOH
247
3
HOH
HOH
677
A
HOH
248
3
HOH
HOH
678
A
HOH
249
3
HOH
HOH
679
A
HOH
250
3
HOH
HOH
680
A
HOH
251
3
HOH
HOH
681
A
HOH
252
3
HOH
HOH
682
A
HOH
253
3
HOH
HOH
683
A
HOH
254
3
HOH
HOH
684
A
HOH
255
3
HOH
HOH
685
A
HOH
256
3
HOH
HOH
686
A
HOH
257
3
HOH
HOH
687
A
HOH
258
3
HOH
HOH
688
A
HOH
259
3
HOH
HOH
689
A
HOH
260
3
HOH
HOH
690
A
HOH
261
3
HOH
HOH
691
A
HOH
262
3
HOH
HOH
692
A
HOH
263
3
HOH
HOH
693
A
HOH
264
3
HOH
HOH
694
A
HOH
265
3
HOH
HOH
695
A
HOH
266
3
HOH
HOH
696
A
HOH
267
3
HOH
HOH
697
A
HOH
268
3
HOH
HOH
698
A
HOH
269
3
HOH
HOH
699
A
HOH
270
3
HOH
HOH
700
A
HOH
271
3
HOH
HOH
701
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
ASP
5
n
5
ASP
5
A
PRO
6
n
6
PRO
6
A
ARG
7
n
7
ARG
7
A
PRO
8
n
8
PRO
8
A
LEU
9
n
9
LEU
9
A
HIS
10
n
10
HIS
10
A
ILE
11
n
11
ILE
11
A
ARG
12
n
12
ARG
12
A
ARG
13
n
13
ARG
13
A
GLN
14
n
14
GLN
14
A
GLY
15
n
15
GLY
15
A
LEU
16
n
16
LEU
16
A
ASP
17
n
17
ASP
17
A
PRO
18
n
18
PRO
18
A
ALA
19
n
19
ALA
19
A
ASP
20
n
20
ASP
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
LEU
23
n
23
LEU
23
A
ALA
24
n
24
ALA
24
A
ALA
25
n
25
ALA
25
A
GLY
26
n
26
GLY
26
A
ALA
27
n
27
ALA
27
A
LEU
28
n
28
LEU
28
A
THR
29
n
29
THR
29
A
ARG
30
n
30
ARG
30
A
VAL
31
n
31
VAL
31
A
THR
32
n
32
THR
32
A
n
33
33
A
n
34
34
A
n
35
35
A
n
36
36
A
n
37
37
A
n
38
38
A
ALA
39
n
39
ALA
39
A
GLU
40
n
40
GLU
40
A
THR
41
n
41
THR
41
A
HIS
42
n
42
HIS
42
A
TRP
43
n
43
TRP
43
A
MET
44
n
44
MET
44
A
ALA
45
n
45
ALA
45
A
THR
46
n
46
THR
46
A
ALA
47
n
47
ALA
47
A
HIS
48
n
48
HIS
48
A
ALA
49
n
49
ALA
49
A
VAL
50
n
50
VAL
50
A
VAL
51
n
51
VAL
51
A
ARG
52
n
52
ARG
52
A
GLN
53
n
53
GLN
53
A
VAL
54
n
54
VAL
54
A
MET
55
n
55
MET
55
A
GLY
56
n
56
GLY
56
A
ASP
57
n
57
ASP
57
A
HIS
58
n
58
HIS
58
A
GLN
59
n
59
GLN
59
A
GLN
60
n
60
GLN
60
A
PHE
61
n
61
PHE
61
A
SER
62
n
62
SER
62
A
THR
63
n
63
THR
63
A
ARG
64
n
64
ARG
64
A
ARG
65
n
65
ARG
65
A
ARG
66
n
66
ARG
66
A
TRP
67
n
67
TRP
67
A
ASP
68
n
68
ASP
68
A
PRO
69
n
69
PRO
69
A
ARG
70
n
70
ARG
70
A
ASP
71
n
71
ASP
71
A
GLU
72
n
72
GLU
72
A
ILE
73
n
73
ILE
73
A
GLY
74
n
74
GLY
74
A
GLY
75
n
75
GLY
75
A
LYS
76
n
76
LYS
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
ALA
79
n
79
PHE
79
A
ARG
80
n
80
ARG
80
A
ALA
81
n
81
PRO
81
A
ARG
82
n
82
ARG
82
A
GLU
83
n
83
GLU
83
A
LEU
84
n
84
LEU
84
A
VAL
85
n
85
VAL
85
A
GLY
86
n
86
GLY
86
A
ASN
87
n
87
ASN
87
A
LEU
88
n
88
LEU
88
A
MET
89
n
89
MET
89
A
ASP
90
n
90
ASP
90
A
TYR
91
n
91
TYR
91
A
ASP
92
n
92
ASP
92
A
PRO
93
n
93
PRO
93
A
PRO
94
n
94
PRO
94
A
GLU
95
n
95
GLU
95
A
HIS
96
n
96
HIS
96
A
THR
97
n
97
THR
97
A
ARG
98
n
98
ARG
98
A
LEU
99
n
99
LEU
99
A
ARG
100
n
100
ARG
100
A
ARG
101
n
101
ARG
101
A
LYS
102
n
102
LYS
102
A
LEU
103
n
103
LEU
103
A
THR
104
n
104
THR
104
A
PRO
105
n
105
PRO
105
A
GLY
106
n
106
GLY
106
A
PHE
107
n
107
PHE
107
A
THR
108
n
108
THR
108
A
LEU
109
n
109
LEU
109
A
ARG
110
n
110
ARG
110
A
LYS
111
n
111
LYS
111
A
MET
112
n
112
MET
112
A
GLN
113
n
113
GLN
113
A
ARG
114
n
114
ARG
114
A
MET
115
n
115
MET
115
A
ALA
116
n
116
ALA
116
A
PRO
117
n
117
PRO
117
A
TYR
118
n
118
TYR
118
A
ILE
119
n
119
ILE
119
A
GLU
120
n
120
GLU
120
A
GLN
121
n
121
GLN
121
A
ILE
122
n
122
ILE
122
A
VAL
123
n
123
VAL
123
A
ASN
124
n
124
ASN
124
A
ASP
125
n
125
ASP
125
A
ARG
126
n
126
ARG
126
A
LEU
127
n
127
LEU
127
A
ASP
128
n
128
ASP
128
A
GLU
129
n
129
GLU
129
A
MET
130
n
130
MET
130
A
GLU
131
n
131
GLU
131
A
ARG
132
n
132
ARG
132
A
ALA
133
n
133
ALA
133
A
GLY
134
n
134
GLY
134
A
SER
135
n
135
SER
135
A
PRO
136
n
136
PRO
136
A
ALA
137
n
137
ALA
137
A
ASP
138
n
138
ASP
138
A
LEU
139
n
139
LEU
139
A
ILE
140
n
140
ILE
140
A
ALA
141
n
141
ALA
141
A
PHE
142
n
142
PHE
142
A
VAL
143
n
143
VAL
143
A
ALA
144
n
144
ALA
144
A
ASP
145
n
145
ASP
145
A
LYS
146
n
146
LYS
146
A
VAL
147
n
147
VAL
147
A
PRO
148
n
148
PRO
148
A
GLY
149
n
149
GLY
149
A
ALA
150
n
150
ALA
150
A
VAL
151
n
151
VAL
151
A
LEU
152
n
152
LEU
152
A
CYS
153
n
153
CYS
153
A
GLU
154
n
154
GLU
154
A
LEU
155
n
155
LEU
155
A
VAL
156
n
156
VAL
156
A
GLY
157
n
157
GLY
157
A
VAL
158
n
158
VAL
158
A
PRO
159
n
159
PRO
159
A
ARG
160
n
160
ARG
160
A
ASP
161
n
161
ASP
161
A
ASP
162
n
162
ASP
162
A
ARG
163
n
163
ARG
163
A
ASP
164
n
164
ASP
164
A
MET
165
n
165
MET
165
A
PHE
166
n
166
PHE
166
A
MET
167
n
167
MET
167
A
LYS
168
n
168
LYS
168
A
LEU
169
n
169
LEU
169
A
CYS
170
n
170
CYS
170
A
HIS
171
n
171
HIS
171
A
GLY
172
n
172
GLY
172
A
HIS
173
n
173
HIS
173
A
LEU
174
n
174
LEU
174
A
ASP
175
n
175
ASP
175
A
ALA
176
n
176
ALA
176
A
SER
177
n
177
SER
177
A
LEU
178
n
178
LEU
178
A
SER
179
n
179
SER
179
A
GLN
180
n
180
GLN
180
A
LYS
181
n
181
LYS
181
A
ARG
182
n
182
ARG
182
A
ARG
183
n
183
ARG
183
A
ALA
184
n
184
ALA
184
A
ALA
185
n
185
ALA
185
A
LEU
186
n
186
LEU
186
A
GLY
187
n
187
GLY
187
A
ASP
188
n
188
ASP
188
A
LYS
189
n
189
LYS
189
A
PHE
190
n
190
PHE
190
A
SER
191
n
191
SER
191
A
ARG
192
n
192
ARG
192
A
TYR
193
n
193
TYR
193
A
LEU
194
n
194
LEU
194
A
LEU
195
n
195
LEU
195
A
ALA
196
n
196
ALA
196
A
MET
197
n
197
MET
197
A
ILE
198
n
198
ILE
198
A
ALA
199
n
199
ALA
199
A
ARG
200
n
200
ARG
200
A
GLU
201
n
201
GLU
201
A
ARG
202
n
202
ARG
202
A
LYS
203
n
203
LYS
203
A
GLU
204
n
204
GLU
204
A
PRO
205
n
205
PRO
205
A
GLY
206
n
206
GLY
206
A
GLU
207
n
207
GLU
207
A
GLY
208
n
208
GLY
208
A
MET
209
n
209
MET
209
A
ILE
210
n
210
ILE
210
A
GLY
211
n
211
GLY
211
A
ALA
212
n
212
ALA
212
A
VAL
213
n
213
VAL
213
A
VAL
214
n
214
VAL
214
A
ALA
215
n
215
ALA
215
A
GLU
216
n
216
GLU
216
A
TYR
217
n
217
TYR
217
A
GLY
218
n
218
GLY
218
A
ASP
219
n
219
ASP
219
A
ASP
220
n
220
ASP
220
A
ALA
221
n
221
ALA
221
A
THR
222
n
222
THR
222
A
ASP
223
n
223
ASP
223
A
GLU
224
n
224
GLU
224
A
GLU
225
n
225
GLU
225
A
LEU
226
n
226
LEU
226
A
ARG
227
n
227
ARG
227
A
GLY
228
n
228
GLY
228
A
PHE
229
n
229
PHE
229
A
CYS
230
n
230
CYS
230
A
VAL
231
n
231
VAL
231
A
GLN
232
n
232
GLN
232
A
VAL
233
n
233
VAL
233
A
MET
234
n
234
MET
234
A
LEU
235
n
235
LEU
235
A
ALA
236
n
236
ALA
236
A
GLY
237
n
237
GLY
237
A
ASP
238
n
238
ASP
238
A
ASP
239
n
239
ASP
239
A
ASN
240
n
240
ASN
240
A
ILE
241
n
241
ILE
241
A
SER
242
n
242
SER
242
A
GLY
243
n
243
GLY
243
A
MET
244
n
244
MET
244
A
ILE
245
n
245
ILE
245
A
GLY
246
n
246
GLY
246
A
LEU
247
n
247
LEU
247
A
GLY
248
n
248
GLY
248
A
VAL
249
n
249
VAL
249
A
LEU
250
n
250
LEU
250
A
ALA
251
n
251
ALA
251
A
MET
252
n
252
MET
252
A
LEU
253
n
253
LEU
253
A
ARG
254
n
254
ARG
254
A
HIS
255
n
255
HIS
255
A
PRO
256
n
256
PRO
256
A
GLU
257
n
257
GLU
257
A
GLN
258
n
258
GLN
258
A
ILE
259
n
259
ILE
259
A
ASP
260
n
260
ASP
260
A
ALA
261
n
261
ALA
261
A
PHE
262
n
262
PHE
262
A
ARG
263
n
263
ARG
263
A
GLY
264
n
264
GLY
264
A
ASP
265
n
265
ASP
265
A
GLU
266
n
266
GLU
266
A
GLN
267
n
267
GLN
267
A
SER
268
n
268
SER
268
A
ALA
269
n
269
ALA
269
A
GLN
270
n
270
GLN
270
A
ARG
271
n
271
ARG
271
A
ALA
272
n
272
ALA
272
A
VAL
273
n
273
VAL
273
A
ASP
274
n
274
ASP
274
A
GLU
275
n
275
GLU
275
A
LEU
276
n
276
LEU
276
A
ILE
277
n
277
ILE
277
A
ARG
278
n
278
ARG
278
A
TYR
279
n
279
TYR
279
A
LEU
280
n
280
LEU
280
A
THR
281
n
281
THR
281
A
VAL
282
n
282
VAL
282
A
PRO
283
n
283
PRO
283
A
TYR
284
n
284
TYR
284
A
SER
285
n
285
SER
285
A
PRO
286
n
286
PRO
286
A
THR
287
n
287
THR
287
A
PRO
288
n
288
PRO
288
A
ARG
289
n
289
ARG
289
A
ILE
290
n
290
ILE
290
A
ALA
291
n
291
ALA
291
A
ARG
292
n
292
ARG
292
A
GLU
293
n
293
GLU
293
A
ASP
294
n
294
ASP
294
A
LEU
295
n
295
LEU
295
A
THR
296
n
296
THR
296
A
LEU
297
n
297
LEU
297
A
ALA
298
n
298
ALA
298
A
GLY
299
n
299
GLY
299
A
GLN
300
n
300
GLN
300
A
GLU
301
n
301
GLU
301
A
ILE
302
n
302
ILE
302
A
LYS
303
n
303
LYS
303
A
LYS
304
n
304
LYS
304
A
GLY
305
n
305
GLY
305
A
ASP
306
n
306
ASP
306
A
SER
307
n
307
SER
307
A
VAL
308
n
308
VAL
308
A
ILE
309
n
309
ILE
309
A
CYS
310
n
310
CYS
310
A
SER
311
n
311
SER
311
A
LEU
312
n
312
LEU
312
A
PRO
313
n
313
PRO
313
A
ALA
314
n
314
ALA
314
A
ALA
315
n
315
ALA
315
A
ASN
316
n
316
ASN
316
A
ARG
317
n
317
ARG
317
A
ASP
318
n
318
ASP
318
A
PRO
319
n
319
PRO
319
A
ALA
320
n
320
ALA
320
A
LEU
321
n
321
LEU
321
A
ALA
322
n
322
ALA
322
A
PRO
323
n
323
PRO
323
A
ASP
324
n
324
ASP
324
A
VAL
325
n
325
VAL
325
A
ASP
326
n
326
ASP
326
A
ARG
327
n
327
ARG
327
A
LEU
328
n
328
LEU
328
A
ASP
329
n
329
ASP
329
A
VAL
330
n
330
VAL
330
A
THR
331
n
331
THR
331
A
ARG
332
n
332
ARG
332
A
GLU
333
n
333
GLU
333
A
PRO
334
n
334
PRO
334
A
ILE
335
n
335
ILE
335
A
PRO
336
n
336
PRO
336
A
HIS
337
n
337
HIS
337
A
VAL
338
n
338
VAL
338
A
ALA
339
n
339
ALA
339
A
PHE
340
n
340
PHE
340
A
GLY
341
n
341
GLY
341
A
HIS
342
n
342
HIS
342
A
GLY
343
n
343
GLY
343
A
VAL
344
n
344
VAL
344
A
HIS
345
n
345
HIS
345
A
HIS
346
n
346
HIS
346
A
CYS
347
n
347
CYS
347
A
LEU
348
n
348
LEU
348
A
GLY
349
n
349
GLY
349
A
ALA
350
n
350
ALA
350
A
ALA
351
n
351
ALA
351
A
LEU
352
n
352
LEU
352
A
ALA
353
n
353
ALA
353
A
ARG
354
n
354
ARG
354
A
LEU
355
n
355
LEU
355
A
GLU
356
n
356
GLU
356
A
LEU
357
n
357
LEU
357
A
ARG
358
n
358
ARG
358
A
THR
359
n
359
THR
359
A
VAL
360
n
360
VAL
360
A
PHE
361
n
361
PHE
361
A
THR
362
n
362
THR
362
A
GLU
363
n
363
GLU
363
A
LEU
364
n
364
LEU
364
A
TRP
365
n
365
TRP
365
A
ARG
366
n
366
ARG
366
A
ARG
367
n
367
ARG
367
A
PHE
368
n
368
PHE
368
A
PRO
369
n
369
PRO
369
A
ALA
370
n
370
ALA
370
A
LEU
371
n
371
LEU
371
A
ARG
372
n
372
ARG
372
A
LEU
373
n
373
LEU
373
A
ALA
374
n
374
ALA
374
A
ASP
375
n
375
ASP
375
A
PRO
376
n
376
PRO
376
A
ALA
377
n
377
ALA
377
A
GLN
378
n
378
GLN
378
A
ASP
379
n
379
ASP
379
A
THR
380
n
380
THR
380
A
GLU
381
n
381
GLU
381
A
PHE
382
n
382
PHE
382
A
ARG
383
n
383
ARG
383
A
LEU
384
n
384
LEU
384
A
THR
385
n
385
THR
385
A
THR
386
n
386
THR
386
A
PRO
387
n
387
PRO
387
A
ALA
388
n
388
ALA
388
A
TYR
389
n
389
TYR
389
A
GLY
390
n
390
GLY
390
A
LEU
391
n
391
LEU
391
A
THR
392
n
392
THR
392
A
GLU
393
n
393
GLU
393
A
LEU
394
n
394
LEU
394
A
MET
395
n
395
MET
395
A
VAL
396
n
396
VAL
396
A
ALA
397
n
397
ALA
397
A
TRP
398
n
398
TRP
398
A
author_defined_assembly
1
monomeric
A
CYS
347
A
SG
CYS
347
1_555
A
HEM
430
B
FE
HEM
1_555
A
HEM
430
B
NA
HEM
1_555
97.6
A
CYS
347
A
SG
CYS
347
1_555
A
HEM
430
B
FE
HEM
1_555
A
HEM
430
B
NB
HEM
1_555
86.6
A
HEM
430
B
NA
HEM
1_555
A
HEM
430
B
FE
HEM
1_555
A
HEM
430
B
NB
HEM
1_555
89.3
A
CYS
347
A
SG
CYS
347
1_555
A
HEM
430
B
FE
HEM
1_555
A
HEM
430
B
NC
HEM
1_555
87.0
A
HEM
430
B
NA
HEM
1_555
A
HEM
430
B
FE
HEM
1_555
A
HEM
430
B
NC
HEM
1_555
175.2
A
HEM
430
B
NB
HEM
1_555
A
HEM
430
B
FE
HEM
1_555
A
HEM
430
B
NC
HEM
1_555
89.7
A
CYS
347
A
SG
CYS
347
1_555
A
HEM
430
B
FE
HEM
1_555
A
HEM
430
B
ND
HEM
1_555
93.9
A
HEM
430
B
NA
HEM
1_555
A
HEM
430
B
FE
HEM
1_555
A
HEM
430
B
ND
HEM
1_555
88.4
A
HEM
430
B
NB
HEM
1_555
A
HEM
430
B
FE
HEM
1_555
A
HEM
430
B
ND
HEM
1_555
177.7
A
HEM
430
B
NC
HEM
1_555
A
HEM
430
B
FE
HEM
1_555
A
HEM
430
B
ND
HEM
1_555
92.6
A
CYS
347
A
SG
CYS
347
1_555
A
HEM
430
B
FE
HEM
1_555
A
HOH
682
C
O
HOH
1_555
173.6
A
HEM
430
B
NA
HEM
1_555
A
HEM
430
B
FE
HEM
1_555
A
HOH
682
C
O
HOH
1_555
82.8
A
HEM
430
B
NB
HEM
1_555
A
HEM
430
B
FE
HEM
1_555
A
HOH
682
C
O
HOH
1_555
87.0
A
HEM
430
B
NC
HEM
1_555
A
HEM
430
B
FE
HEM
1_555
A
HOH
682
C
O
HOH
1_555
92.5
A
HEM
430
B
ND
HEM
1_555
A
HEM
430
B
FE
HEM
1_555
A
HOH
682
C
O
HOH
1_555
92.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
14
A
N
GLN
14
A
O
ASP
17
A
O
ASP
17
A
N
THR
29
A
N
THR
29
A
O
MET
44
A
O
MET
44
A
N
TRP
43
A
N
TRP
43
A
O
SER
307
A
O
SER
307
A
O
VAL
308
A
O
VAL
308
A
N
ARG
289
A
N
ARG
289
A
O
ILE
290
A
O
ILE
290
A
N
SER
62
A
N
SER
62
A
N
ALA
137
A
N
ALA
137
A
O
VAL
396
A
O
VAL
396
A
O
ALA
397
A
O
ALA
397
A
N
ARG
372
A
N
ARG
372
A
N
LEU
295
A
N
LEU
295
A
O
ILE
302
A
O
ILE
302
A
N
GLU
381
A
N
GLU
381
A
O
THR
392
A
O
THR
392
1
A
CG
PHE
79
A
CG
PHE
79
1
Y
1
A
CD1
PHE
79
A
CD1
PHE
79
1
Y
1
A
CD2
PHE
79
A
CD2
PHE
79
1
Y
1
A
CE1
PHE
79
A
CE1
PHE
79
1
Y
1
A
CE2
PHE
79
A
CE2
PHE
79
1
Y
1
A
CZ
PHE
79
A
CZ
PHE
79
1
Y
1
A
CG
PRO
81
A
CG
PRO
81
1
Y
1
A
CD
PRO
81
A
CD
PRO
81
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
GLU
3
A
GLU
3
1
Y
1
A
ASP
4
A
ASP
4
1
Y
1
A
ILE
33
A
ILE
33
1
Y
1
A
GLY
34
A
GLY
34
1
Y
1
A
SER
35
A
SER
35
1
Y
1
A
GLY
36
A
GLY
36
1
Y
1
A
ALA
37
A
ALA
37
1
Y
1
A
ASP
38
A
ASP
38
1
Y
1
A
ARG
66
56.09
78.33
1
A
PRO
69
-69.92
17.14
1
A
ARG
70
-119.63
-82.29
1
A
GLU
72
-159.89
-122.69
1
A
PHE
79
-54.39
170.49
1
A
ARG
80
-155.63
88.56
1
A
PRO
81
-53.82
-70.33
1
A
GLU
83
60.04
80.42
1
A
LEU
88
-39.77
-34.88
1
A
HIS
173
-70.00
0.99
1
A
SER
177
-50.85
-6.01
1
A
ASP
238
-107.34
-71.48
1
A
THR
281
21.89
77.96
1
A
PRO
336
-66.52
87.44
1
A
HIS
342
-171.07
142.87
1
A
CYS
347
-39.20
114.43
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
0.24
0.007
0.193
0.193
0.193
2.20
19.48
1143
22845
22845
5.0
99.6
RANDOM
3137961.43
1
THROUGHOUT
MOLECULAR REPLACEMENT
PDB ENTRY 1LFK
Engh & Huber
FLAT MODEL
57.8074
0.399049
0.30
0.23
5.00
0.30
0.25
2.20
19.48
271
3353
43
0
3039
0.009
1.2
21.4
0.92
0.295
0.021
0.267
2.34
190
3594
6
5.0
99.4
14.0
2.2
19.48
1LGF
22845
22845
0
0
0.086
1
11.6
3.6
99.6
2.2
2.3
4.0
2818
0.341
3.56
99.4
data collection
ProDC
data reduction
XDS
refinement
CNS
data scaling
XDS
phasing
CNS
Crystal structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction During Vancomycin Biosynthesis
1
N
N
2
N
N
3
N
N
A
PRO
8
A
PRO
8
HELX_P
A
ILE
11
A
ILE
11
5
1
4
A
ALA
19
A
ALA
19
HELX_P
A
ALA
24
A
ALA
24
1
2
6
A
ALA
47
A
ALA
47
HELX_P
A
ASP
57
A
ASP
57
1
3
11
A
ASN
87
A
ASN
87
HELX_P
A
TYR
91
A
TYR
91
5
4
5
A
PRO
94
A
PRO
94
HELX_P
A
THR
104
A
THR
104
1
5
11
A
PRO
105
A
PRO
105
HELX_P
A
PHE
107
A
PHE
107
5
6
3
A
THR
108
A
THR
108
HELX_P
A
GLY
134
A
GLY
134
1
7
27
A
LEU
139
A
LEU
139
HELX_P
A
VAL
143
A
VAL
143
1
8
5
A
LYS
146
A
LYS
146
HELX_P
A
GLY
157
A
GLY
157
1
9
12
A
PRO
159
A
PRO
159
HELX_P
A
ASP
161
A
ASP
161
5
10
3
A
ASP
162
A
ASP
162
HELX_P
A
HIS
173
A
HIS
173
1
11
12
A
SER
179
A
SER
179
HELX_P
A
GLU
204
A
GLU
204
1
12
26
A
GLY
208
A
GLY
208
HELX_P
A
GLY
218
A
GLY
218
1
13
11
A
ASP
219
A
ASP
219
HELX_P
A
ALA
221
A
ALA
221
5
14
3
A
THR
222
A
THR
222
HELX_P
A
GLY
237
A
GLY
237
1
15
16
A
ASP
238
A
ASP
238
HELX_P
A
ARG
254
A
ARG
254
1
16
17
A
HIS
255
A
HIS
255
HELX_P
A
ARG
263
A
ARG
263
5
17
9
A
ASP
265
A
ASP
265
HELX_P
A
THR
281
A
THR
281
1
18
17
A
SER
311
A
SER
311
HELX_P
A
ASN
316
A
ASN
316
1
19
6
A
GLY
349
A
GLY
349
HELX_P
A
PHE
368
A
PHE
368
1
20
20
metalc
2.304
A
CYS
347
A
SG
CYS
347
1_555
A
HEM
430
B
FE
HEM
1_555
metalc
2.284
A
HEM
430
B
FE
HEM
1_555
A
HOH
682
C
O
HOH
1_555
OXIDOREDUCTASE
Cytochrome P450 monooxygenase, OXIDOREDUCTASE
A
PRO
93
A
PRO
93
1
A
PRO
94
A
PRO
94
-0.37
A
SER
135
A
SER
135
1
A
PRO
136
A
PRO
136
0.01
C5B3_AMYOR
UNP
1
1
Q8RN04
MSEDDPRPLHIRRQGLDPADELLAAGALTRVTIGSGADAETHWMATAHAVVRQVMGDHQQFSTRRRWDPRDEIGGKGIFR
PRELVGNLMDYDPPEHTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCELVGVPR
DDRDMFMKLCHGHLDASLSQKRRAALGDKFSRYLLAMIARERKEPGEGMIGAVVAEYGDDATDEELRGFCVQVMLAGDDN
ISGMIGLGVLAMLRHPEQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPA
LAPDVDRLDVTREPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYGLTELMVAW
1
398
1LGF
1
398
Q8RN04
A
1
1
398
2
5
3
2
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
13
A
ARG
13
A
GLN
14
A
GLN
14
A
ASP
17
A
ASP
17
A
PRO
18
A
PRO
18
A
LEU
28
A
LEU
28
A
VAL
31
A
VAL
31
A
HIS
42
A
HIS
42
A
ALA
45
A
ALA
45
A
SER
307
A
SER
307
A
CYS
310
A
CYS
310
A
ARG
289
A
ARG
289
A
ALA
291
A
ALA
291
A
PHE
61
A
PHE
61
A
THR
63
A
THR
63
A
ALA
137
A
ALA
137
A
ASP
138
A
ASP
138
A
MET
395
A
MET
395
A
ALA
397
A
ALA
397
A
ARG
372
A
ARG
372
A
LEU
373
A
LEU
373
A
LEU
295
A
LEU
295
A
LEU
297
A
LEU
297
A
GLN
300
A
GLN
300
A
ILE
302
A
ILE
302
A
GLU
381
A
GLU
381
A
ARG
383
A
ARG
383
A
GLY
390
A
GLY
390
A
GLU
393
A
GLU
393
BINDING SITE FOR RESIDUE HEM A 430
A
HEM
430
Software
21
A
MET
55
A
MET
55
21
1_555
A
LEU
88
A
LEU
88
21
1_555
A
MET
89
A
MET
89
21
1_555
A
HIS
96
A
HIS
96
21
1_555
A
ARG
100
A
ARG
100
21
1_555
A
LEU
152
A
LEU
152
21
1_555
A
ALA
236
A
ALA
236
21
1_555
A
GLY
237
A
GLY
237
21
1_555
A
ASN
240
A
ASN
240
21
1_555
A
PRO
283
A
PRO
283
21
1_555
A
PRO
286
A
PRO
286
21
1_555
A
THR
287
A
THR
287
21
1_555
A
ARG
289
A
ARG
289
21
1_555
A
ALA
339
A
ALA
339
21
1_555
A
PHE
340
A
PHE
340
21
1_555
A
GLY
341
A
GLY
341
21
1_555
A
HIS
345
A
HIS
345
21
1_555
A
CYS
347
A
CYS
347
21
1_555
A
LEU
352
A
LEU
352
21
1_555
A
HOH
436
C
HOH
21
1_555
A
HOH
682
C
HOH
21
1_555
5
C 1 2 1