0.014124
0.000000
0.002567
0.000000
0.013812
0.000000
0.000000
0.000000
0.014077
0.00000
0.00000
0.00000
Weber, P.C.
Lee, S.L.
Lewandowski, F.A.
Schadt, M.C.
Chang, C.H.
Kettner, C.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
100.30
90.00
70.800
72.400
72.200
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C22 H34 B N5 O5
459.347
AC-(D)PHE-PRO-BORO-N-BUTYL-AMIDINO-GLYCINE-OH
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
34
3750
3757
10.1021/bi00011a033
7893672
Kinetic and crystallographic studies of thrombin with Ac-(D)Phe-Pro-boroArg-OH and its lysine, amidine, homolysine, and ornithine analogs.
1995
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
4096.534
ALPHA-THROMBIN
3.4.21.5
1
nat
polymer
29780.219
ALPHA-THROMBIN
3.4.21.5
1
nat
polymer
1468.517
HIRUDIN
RESIDUES 54 - 65
1
man
polymer
459.347
AC-(D)PHE-PRO-BORO-N-BUTYL-AMIDINO-GLYCINE-OH
1
syn
non-polymer
18.015
water
116
nat
water
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
L
polypeptide(L)
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
H
polypeptide(L)
no
no
GDFEEIPEEYLQ
GDFEEIPEEYLQ
I
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
medicinal leech
Hirudo
sample
6421
Hirudo medicinalis
human
Homo
sample
9606
BLOOD
Homo sapiens
BLOOD
human
Homo
sample
9606
BLOOD
Homo sapiens
BLOOD
2.57
52.22
repository
Initial release
Version format compliance
Version format compliance
1
0
1996-11-08
1
1
2008-03-24
1
2
2011-07-13
Y
1994-12-27
REL
DI3
AC-(D)PHE-PRO-BORO-N-BUTYL-AMIDINO-GLYCINE-OH
HOH
water
THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN
IDENTIFIER *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN
IDENTIFIER *H* IS USED FOR RESIDUES 16 - 247. CHAIN
IDENTIFIER *I* IS USED FOR THE 12-RESIDUE HIRUDIN PEPTIDE.
CHYMOTRYPSIN NUMBERING (RATHER THAN SEQUENTIAL) SYSTEM IS
USED, BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE
STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., 1989, EMBO J. 8,
3467-3475).
DI3
400
4
DI3
DI3
400
H
HOH
503
5
HOH
HOH
503
L
HOH
515
5
HOH
HOH
515
L
HOH
541
5
HOH
HOH
541
L
HOH
545
5
HOH
HOH
545
L
HOH
546
5
HOH
HOH
546
L
HOH
560
5
HOH
HOH
560
L
HOH
591
5
HOH
HOH
591
L
HOH
593
5
HOH
HOH
593
L
HOH
595
5
HOH
HOH
595
L
HOH
602
5
HOH
HOH
602
L
HOH
636
5
HOH
HOH
636
L
HOH
641
5
HOH
HOH
641
L
HOH
501
5
HOH
HOH
501
H
HOH
502
5
HOH
HOH
502
H
HOH
504
5
HOH
HOH
504
H
HOH
505
5
HOH
HOH
505
H
HOH
506
5
HOH
HOH
506
H
HOH
507
5
HOH
HOH
507
H
HOH
508
5
HOH
HOH
508
H
HOH
511
5
HOH
HOH
511
H
HOH
513
5
HOH
HOH
513
H
HOH
517
5
HOH
HOH
517
H
HOH
519
5
HOH
HOH
519
H
HOH
521
5
HOH
HOH
521
H
HOH
522
5
HOH
HOH
522
H
HOH
524
5
HOH
HOH
524
H
HOH
529
5
HOH
HOH
529
H
HOH
532
5
HOH
HOH
532
H
HOH
534
5
HOH
HOH
534
H
HOH
535
5
HOH
HOH
535
H
HOH
537
5
HOH
HOH
537
H
HOH
539
5
HOH
HOH
539
H
HOH
542
5
HOH
HOH
542
H
HOH
543
5
HOH
HOH
543
H
HOH
544
5
HOH
HOH
544
H
HOH
550
5
HOH
HOH
550
H
HOH
551
5
HOH
HOH
551
H
HOH
552
5
HOH
HOH
552
H
HOH
553
5
HOH
HOH
553
H
HOH
554
5
HOH
HOH
554
H
HOH
555
5
HOH
HOH
555
H
HOH
556
5
HOH
HOH
556
H
HOH
557
5
HOH
HOH
557
H
HOH
558
5
HOH
HOH
558
H
HOH
559
5
HOH
HOH
559
H
HOH
561
5
HOH
HOH
561
H
HOH
562
5
HOH
HOH
562
H
HOH
563
5
HOH
HOH
563
H
HOH
564
5
HOH
HOH
564
H
HOH
565
5
HOH
HOH
565
H
HOH
567
5
HOH
HOH
567
H
HOH
568
5
HOH
HOH
568
H
HOH
570
5
HOH
HOH
570
H
HOH
571
5
HOH
HOH
571
H
HOH
572
5
HOH
HOH
572
H
HOH
574
5
HOH
HOH
574
H
HOH
575
5
HOH
HOH
575
H
HOH
576
5
HOH
HOH
576
H
HOH
577
5
HOH
HOH
577
H
HOH
578
5
HOH
HOH
578
H
HOH
579
5
HOH
HOH
579
H
HOH
580
5
HOH
HOH
580
H
HOH
581
5
HOH
HOH
581
H
HOH
582
5
HOH
HOH
582
H
HOH
583
5
HOH
HOH
583
H
HOH
584
5
HOH
HOH
584
H
HOH
586
5
HOH
HOH
586
H
HOH
587
5
HOH
HOH
587
H
HOH
588
5
HOH
HOH
588
H
HOH
589
5
HOH
HOH
589
H
HOH
590
5
HOH
HOH
590
H
HOH
594
5
HOH
HOH
594
H
HOH
598
5
HOH
HOH
598
H
HOH
599
5
HOH
HOH
599
H
HOH
600
5
HOH
HOH
600
H
HOH
601
5
HOH
HOH
601
H
HOH
603
5
HOH
HOH
603
H
HOH
604
5
HOH
HOH
604
H
HOH
605
5
HOH
HOH
605
H
HOH
609
5
HOH
HOH
609
H
HOH
610
5
HOH
HOH
610
H
HOH
611
5
HOH
HOH
611
H
HOH
613
5
HOH
HOH
613
H
HOH
614
5
HOH
HOH
614
H
HOH
615
5
HOH
HOH
615
H
HOH
616
5
HOH
HOH
616
H
HOH
617
5
HOH
HOH
617
H
HOH
619
5
HOH
HOH
619
H
HOH
620
5
HOH
HOH
620
H
HOH
621
5
HOH
HOH
621
H
HOH
622
5
HOH
HOH
622
H
HOH
623
5
HOH
HOH
623
H
HOH
624
5
HOH
HOH
624
H
HOH
625
5
HOH
HOH
625
H
HOH
626
5
HOH
HOH
626
H
HOH
628
5
HOH
HOH
628
H
HOH
629
5
HOH
HOH
629
H
HOH
630
5
HOH
HOH
630
H
HOH
631
5
HOH
HOH
631
H
HOH
634
5
HOH
HOH
634
H
HOH
635
5
HOH
HOH
635
H
HOH
637
5
HOH
HOH
637
H
HOH
638
5
HOH
HOH
638
H
HOH
639
5
HOH
HOH
639
H
HOH
640
5
HOH
HOH
640
H
HOH
642
5
HOH
HOH
642
H
HOH
643
5
HOH
HOH
643
H
HOH
644
5
HOH
HOH
644
H
HOH
645
5
HOH
HOH
645
H
HOH
646
5
HOH
HOH
646
H
HOH
647
5
HOH
HOH
647
H
HOH
649
5
HOH
HOH
649
H
HOH
650
5
HOH
HOH
650
H
HOH
651
5
HOH
HOH
651
H
HOH
510
5
HOH
HOH
510
I
HOH
648
5
HOH
HOH
648
I
n
1
-5
L
n
2
-4
L
n
3
-3
L
n
4
-2
L
n
5
-1
L
n
6
0
L
ALA
1
n
7
B
ALA
1
L
ASP
1
n
8
A
ASP
1
L
CYS
1
n
9
CYS
1
L
GLY
2
n
10
GLY
2
L
LEU
3
n
11
LEU
3
L
ARG
4
n
12
ARG
4
L
PRO
5
n
13
PRO
5
L
LEU
6
n
14
LEU
6
L
PHE
7
n
15
PHE
7
L
GLU
8
n
16
GLU
8
L
LYS
9
n
17
LYS
9
L
LYS
10
n
18
LYS
10
L
SER
11
n
19
SER
11
L
LEU
12
n
20
LEU
12
L
GLU
13
n
21
GLU
13
L
ASP
14
n
22
ASP
14
L
LYS
14
n
23
A
LYS
14
L
THR
14
n
24
B
THR
14
L
GLU
14
n
25
C
GLU
14
L
ARG
14
n
26
D
ARG
14
L
GLU
14
n
27
E
GLU
14
L
LEU
14
n
28
F
LEU
14
L
LEU
14
n
29
G
LEU
14
L
GLU
14
n
30
H
GLU
14
L
SER
14
n
31
I
SER
14
L
TYR
14
n
32
J
TYR
14
L
n
33
15
L
n
34
16
L
n
35
17
L
n
36
18
L
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLU
18
n
3
GLU
18
H
GLY
19
n
4
GLY
19
H
SER
20
n
5
SER
20
H
ASP
21
n
6
ASP
21
H
ALA
22
n
7
ALA
22
H
GLU
23
n
8
GLU
23
H
ILE
24
n
9
ILE
24
H
GLY
25
n
10
GLY
25
H
MET
26
n
11
MET
26
H
SER
27
n
12
SER
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
MET
32
n
17
MET
32
H
LEU
33
n
18
LEU
33
H
PHE
34
n
19
PHE
34
H
ARG
35
n
20
ARG
35
H
LYS
36
n
21
LYS
36
H
SER
36
n
22
A
SER
36
H
PRO
37
n
23
PRO
37
H
GLN
38
n
24
GLN
38
H
GLU
39
n
25
GLU
39
H
LEU
40
n
26
LEU
40
H
LEU
41
n
27
LEU
41
H
CYS
42
n
28
CYS
42
H
GLY
43
n
29
GLY
43
H
ALA
44
n
30
ALA
44
H
SER
45
n
31
SER
45
H
LEU
46
n
32
LEU
46
H
ILE
47
n
33
ILE
47
H
SER
48
n
34
SER
48
H
ASP
49
n
35
ASP
49
H
ARG
50
n
36
ARG
50
H
TRP
51
n
37
TRP
51
H
VAL
52
n
38
VAL
52
H
LEU
53
n
39
LEU
53
H
THR
54
n
40
THR
54
H
ALA
55
n
41
ALA
55
H
ALA
56
n
42
ALA
56
H
HIS
57
n
43
HIS
57
H
CYS
58
n
44
CYS
58
H
LEU
59
n
45
LEU
59
H
LEU
60
n
46
LEU
60
H
TYR
60
n
47
A
TYR
60
H
PRO
60
n
48
B
PRO
60
H
PRO
60
n
49
C
PRO
60
H
TRP
60
n
50
D
TRP
60
H
ASP
60
n
51
E
ASP
60
H
LYS
60
n
52
F
LYS
60
H
ASN
60
n
53
G
ASN
60
H
PHE
60
n
54
H
PHE
60
H
THR
60
n
55
I
THR
60
H
GLU
61
n
56
GLU
61
H
ASN
62
n
57
ASN
62
H
ASP
63
n
58
ASP
63
H
LEU
64
n
59
LEU
64
H
LEU
65
n
60
LEU
65
H
VAL
66
n
61
VAL
66
H
ARG
67
n
62
ARG
67
H
ILE
68
n
63
ILE
68
H
GLY
69
n
64
GLY
69
H
LYS
70
n
65
LYS
70
H
HIS
71
n
66
HIS
71
H
SER
72
n
67
SER
72
H
ARG
73
n
68
ARG
73
H
THR
74
n
69
THR
74
H
ARG
75
n
70
ARG
75
H
TYR
76
n
71
TYR
76
H
GLU
77
n
72
GLU
77
H
ARG
77
n
73
A
ARG
77
H
ASN
78
n
74
ASN
78
H
ILE
79
n
75
ILE
79
H
GLU
80
n
76
GLU
80
H
LYS
81
n
77
LYS
81
H
ILE
82
n
78
ILE
82
H
SER
83
n
79
SER
83
H
MET
84
n
80
MET
84
H
LEU
85
n
81
LEU
85
H
GLU
86
n
82
GLU
86
H
LYS
87
n
83
LYS
87
H
ILE
88
n
84
ILE
88
H
TYR
89
n
85
TYR
89
H
ILE
90
n
86
ILE
90
H
HIS
91
n
87
HIS
91
H
PRO
92
n
88
PRO
92
H
ARG
93
n
89
ARG
93
H
TYR
94
n
90
TYR
94
H
ASN
95
n
91
ASN
95
H
TRP
96
n
92
TRP
96
H
ARG
97
n
93
ARG
97
H
GLU
97
n
94
A
GLU
97
H
ASN
98
n
95
ASN
98
H
LEU
99
n
96
LEU
99
H
ASP
100
n
97
ASP
100
H
ARG
101
n
98
ARG
101
H
ASP
102
n
99
ASP
102
H
ILE
103
n
100
ILE
103
H
ALA
104
n
101
ALA
104
H
LEU
105
n
102
LEU
105
H
MET
106
n
103
MET
106
H
LYS
107
n
104
LYS
107
H
LEU
108
n
105
LEU
108
H
LYS
109
n
106
LYS
109
H
LYS
110
n
107
LYS
110
H
PRO
111
n
108
PRO
111
H
VAL
112
n
109
VAL
112
H
ALA
113
n
110
ALA
113
H
PHE
114
n
111
PHE
114
H
SER
115
n
112
SER
115
H
ASP
116
n
113
ASP
116
H
TYR
117
n
114
TYR
117
H
ILE
118
n
115
ILE
118
H
HIS
119
n
116
HIS
119
H
PRO
120
n
117
PRO
120
H
VAL
121
n
118
VAL
121
H
CYS
122
n
119
CYS
122
H
LEU
123
n
120
LEU
123
H
PRO
124
n
121
PRO
124
H
ASP
125
n
122
ASP
125
H
ARG
126
n
123
ARG
126
H
GLU
127
n
124
GLU
127
H
THR
128
n
125
THR
128
H
ALA
129
n
126
ALA
129
H
ALA
129
n
127
A
ALA
129
H
SER
129
n
128
B
SER
129
H
LEU
129
n
129
C
LEU
129
H
LEU
130
n
130
LEU
130
H
GLN
131
n
131
GLN
131
H
ALA
132
n
132
ALA
132
H
GLY
133
n
133
GLY
133
H
TYR
134
n
134
TYR
134
H
LYS
135
n
135
LYS
135
H
GLY
136
n
136
GLY
136
H
ARG
137
n
137
ARG
137
H
VAL
138
n
138
VAL
138
H
THR
139
n
139
THR
139
H
GLY
140
n
140
GLY
140
H
TRP
141
n
141
TRP
141
H
GLY
142
n
142
GLY
142
H
ASN
143
n
143
ASN
143
H
LEU
144
n
144
LEU
144
H
LYS
145
n
145
LYS
145
H
GLU
146
n
146
GLU
146
H
n
147
A
146
H
n
148
B
146
H
n
149
C
146
H
n
150
D
146
H
n
151
E
146
H
n
152
F
146
H
n
153
G
146
H
n
154
H
146
H
GLY
150
n
155
GLY
150
H
GLN
151
n
156
GLN
151
H
PRO
152
n
157
PRO
152
H
SER
153
n
158
SER
153
H
VAL
154
n
159
VAL
154
H
LEU
155
n
160
LEU
155
H
GLN
156
n
161
GLN
156
H
VAL
157
n
162
VAL
157
H
VAL
158
n
163
VAL
158
H
ASN
159
n
164
ASN
159
H
LEU
160
n
165
LEU
160
H
PRO
161
n
166
PRO
161
H
ILE
162
n
167
ILE
162
H
VAL
163
n
168
VAL
163
H
GLU
164
n
169
GLU
164
H
ARG
165
n
170
ARG
165
H
PRO
166
n
171
PRO
166
H
VAL
167
n
172
VAL
167
H
CYS
168
n
173
CYS
168
H
LYS
169
n
174
LYS
169
H
ASP
170
n
175
ASP
170
H
SER
171
n
176
SER
171
H
THR
172
n
177
THR
172
H
ARG
173
n
178
ARG
173
H
ILE
174
n
179
ILE
174
H
ARG
175
n
180
ARG
175
H
ILE
176
n
181
ILE
176
H
THR
177
n
182
THR
177
H
ASP
178
n
183
ASP
178
H
ASN
179
n
184
ASN
179
H
MET
180
n
185
MET
180
H
PHE
181
n
186
PHE
181
H
CYS
182
n
187
CYS
182
H
ALA
183
n
188
ALA
183
H
GLY
184
n
189
GLY
184
H
TYR
184
n
190
A
TYR
184
H
LYS
185
n
191
LYS
185
H
PRO
186
n
192
PRO
186
H
ASP
186
n
193
A
ASP
186
H
GLU
186
n
194
B
GLU
186
H
GLY
186
n
195
C
GLY
186
H
LYS
186
n
196
D
LYS
186
H
ARG
187
n
197
ARG
187
H
GLY
188
n
198
GLY
188
H
ASP
189
n
199
ASP
189
H
ALA
190
n
200
ALA
190
H
CYS
191
n
201
CYS
191
H
GLU
192
n
202
GLU
192
H
GLY
193
n
203
GLY
193
H
ASP
194
n
204
ASP
194
H
SER
195
n
205
SER
195
H
GLY
196
n
206
GLY
196
H
GLY
197
n
207
GLY
197
H
PRO
198
n
208
PRO
198
H
PHE
199
n
209
PHE
199
H
VAL
200
n
210
VAL
200
H
MET
201
n
211
MET
201
H
LYS
202
n
212
LYS
202
H
SER
203
n
213
SER
203
H
PRO
204
n
214
PRO
204
H
PHE
204
n
215
A
PHE
204
H
ASN
204
n
216
B
ASN
204
H
ASN
205
n
217
ASN
205
H
ARG
206
n
218
ARG
206
H
TRP
207
n
219
TRP
207
H
TYR
208
n
220
TYR
208
H
GLN
209
n
221
GLN
209
H
MET
210
n
222
MET
210
H
GLY
211
n
223
GLY
211
H
ILE
212
n
224
ILE
212
H
VAL
213
n
225
VAL
213
H
SER
214
n
226
SER
214
H
TRP
215
n
227
TRP
215
H
GLY
216
n
228
GLY
216
H
GLU
217
n
229
GLU
217
H
GLY
219
n
230
GLY
219
H
CYS
220
n
231
CYS
220
H
ASP
221
n
232
ASP
221
H
ARG
221
n
233
A
ARG
221
H
ASP
222
n
234
ASP
222
H
GLY
223
n
235
GLY
223
H
LYS
224
n
236
LYS
224
H
TYR
225
n
237
TYR
225
H
GLY
226
n
238
GLY
226
H
PHE
227
n
239
PHE
227
H
TYR
228
n
240
TYR
228
H
THR
229
n
241
THR
229
H
HIS
230
n
242
HIS
230
H
VAL
231
n
243
VAL
231
H
PHE
232
n
244
PHE
232
H
ARG
233
n
245
ARG
233
H
LEU
234
n
246
LEU
234
H
LYS
235
n
247
LYS
235
H
LYS
236
n
248
LYS
236
H
TRP
237
n
249
TRP
237
H
ILE
238
n
250
ILE
238
H
GLN
239
n
251
GLN
239
H
LYS
240
n
252
LYS
240
H
VAL
241
n
253
VAL
241
H
ILE
242
n
254
ILE
242
H
ASP
243
n
255
ASP
243
H
GLN
244
n
256
GLN
244
H
PHE
245
n
257
PHE
245
H
n
258
246
H
n
259
247
H
GLY
54
n
1
GLY
54
I
ASP
55
n
2
ASP
55
I
PHE
56
n
3
PHE
56
I
GLU
57
n
4
GLU
57
I
GLU
58
n
5
GLU
58
I
ILE
59
n
6
ILE
59
I
PRO
60
n
7
PRO
60
I
n
8
61
I
n
9
62
I
n
10
63
I
n
11
64
I
n
12
65
I
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
O
LYS
81
B
O
LYS
77
H
N
ILE
68
B
N
ILE
63
H
O
LEU
65
B
O
LEU
60
H
N
PHE
34
B
N
PHE
19
H
O
VAL
31
B
O
VAL
16
H
N
ALA
44
B
N
ALA
30
H
O
VAL
52
B
O
VAL
38
H
N
MET
106
B
N
MET
103
H
O
LEU
105
B
O
LEU
102
H
N
TYR
89
B
N
TYR
85
H
O
GLY
136
B
O
GLY
136
H
N
LEU
160
B
N
LEU
165
H
O
PHE
181
B
O
PHE
186
H
N
TYR
228
B
N
TYR
240
H
O
PHE
227
B
O
PHE
239
H
N
TRP
215
B
N
TRP
227
H
O
TYR
208
B
O
TYR
220
H
N
MET
201
B
N
MET
211
1
L
THR
-5
A
THR
1
1
Y
1
L
PHE
-4
A
PHE
2
1
Y
1
L
GLY
-3
A
GLY
3
1
Y
1
L
SER
-2
A
SER
4
1
Y
1
L
GLY
-1
A
GLY
5
1
Y
1
L
GLU
0
A
GLU
6
1
Y
1
L
ILE
15
A
ILE
33
1
Y
1
L
ASP
16
A
ASP
34
1
Y
1
L
GLY
17
A
GLY
35
1
Y
1
L
ARG
18
A
ARG
36
1
Y
A
1
H
THR
146
B
THR
147
1
Y
B
1
H
TRP
146
B
TRP
148
1
Y
C
1
H
THR
146
B
THR
149
1
Y
D
1
H
ALA
146
B
ALA
150
1
Y
E
1
H
ASN
146
B
ASN
151
1
Y
F
1
H
VAL
146
B
VAL
152
1
Y
G
1
H
GLY
146
B
GLY
153
1
Y
H
1
H
LYS
146
B
LYS
154
1
Y
1
H
GLY
246
B
GLY
258
1
Y
1
H
GLU
247
B
GLU
259
1
Y
1
I
GLU
61
C
GLU
8
1
Y
1
I
GLU
62
C
GLU
9
1
Y
1
I
TYR
63
C
TYR
10
1
Y
1
I
LEU
64
C
LEU
11
1
Y
1
I
GLN
65
C
GLN
12
1
Y
1
H
H
NH2
O
ARG
THR
165
177
2.10
1
H
H
O
O
HOH
HOH
543
564
2.11
1
H
H
O
O
HOH
HOH
562
563
2.17
1
H
H
O
O
HOH
HOH
619
643
2.19
1
H
H
O
O
DI3
HOH
400
565
2.19
1
6.84
1.10
114.20
121.04
H
H
H
CA
CB
SG
CYS
CYS
CYS
42
42
42
N
1
3.52
0.50
120.30
123.82
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
67
67
67
N
1
10.92
1.40
123.60
134.52
H
H
H
CD
NE
CZ
ARG
ARG
ARG
73
73
73
N
1
7.27
0.50
120.30
127.57
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
1
-4.91
0.50
120.30
115.39
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
73
73
73
N
1
4.10
0.50
120.30
124.40
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
101
101
101
N
1
7.51
0.90
118.30
125.81
H
H
H
CB
CG
OD1
ASP
ASP
ASP
116
116
116
N
1
9.45
1.40
123.60
133.05
H
H
H
CD
NE
CZ
ARG
ARG
ARG
137
137
137
N
1
5.07
0.50
120.30
125.37
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
165
165
165
N
1
-4.01
0.50
120.30
116.29
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
165
165
165
N
1
7.29
1.10
114.20
121.49
H
H
H
CA
CB
SG
CYS
CYS
CYS
168
168
168
N
1
-3.08
0.50
120.30
117.22
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
187
187
187
N
1
9.90
1.40
123.60
133.50
H
H
H
CD
NE
CZ
ARG
ARG
ARG
206
206
206
N
1
L
PHE
7
-130.22
-96.07
1
H
ALA
44
-175.71
-175.72
A
1
H
TYR
60
-169.43
77.70
G
1
H
ASN
60
-160.75
81.83
1
H
HIS
71
-131.62
-53.51
A
1
H
ARG
77
-27.32
-64.54
A
1
H
GLU
97
-122.06
-73.14
0.197
2.25
6.0
12345
1
2.25
6.0
116
2437
33
0
2288
0.011
0.022
0.019
0.182
refinement
PROFFT
ALPHA-THROMBIN, HIRUDIN, AC-(D)PHE-PRO-BORO-N-BUTYL-AMIDINO-GLYCINE-OH
HUMAN ALPHA-THROMBIN COMPLEXED WITH AC-(D)PHE-PRO-BORO-N-BUTYL-AMIDINO-GLYCINE-OH
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
L
GLU
8
A
GLU
16
HELX_P
L
LYS
10
A
LYS
18
5
1
3
L
GLU
14
A
GLU
25
HELX_P
L
SER
14
A
SER
31
1
2
7
C
I
H
ALA
56
B
ALA
42
HELX_P
H
CYS
58
B
CYS
44
5
3
3
H
PRO
60
B
PRO
48
HELX_P
H
TRP
60
B
TRP
50
5
4
3
B
D
H
GLU
61
B
GLU
56
HELX_P
H
ASP
63
B
ASP
58
5
5
3
H
ARG
126
B
ARG
123
HELX_P
H
LEU
129
B
LEU
129
1
6
7
C
H
ARG
165
B
ARG
170
HELX_P
H
SER
171
B
SER
176
1
7
7
H
PHE
232
B
PHE
244
HELX_P
H
GLN
244
B
GLN
256
5
8
13
disulf
2.029
L
CYS
1
A
SG
CYS
9
1_555
H
CYS
122
B
SG
CYS
119
1_555
disulf
2.055
H
CYS
42
B
SG
CYS
28
1_555
H
CYS
58
B
SG
CYS
44
1_555
disulf
2.033
H
CYS
168
B
SG
CYS
173
1_555
H
CYS
182
B
SG
CYS
187
1_555
disulf
2.085
H
CYS
191
B
SG
CYS
201
1_555
H
CYS
220
B
SG
CYS
231
1_555
covale
1.581
H
DI3
400
D
B1
DI3
1_555
H
SER
195
B
OG
SER
205
1_555
COMPLEX (SERINE PROTEASE/INHIBITOR)
BLOOD COAGULATION, PLASMA, CALCIUM-BINDING, GLYCOPROTEIN, DUPLICATION, VITAMIN K, ZYMOGEN, GAMMA-CARBOXYGLUTAMIC ACID, ACUTE PHASE, LIVER, HYDROLASE, SERINE PROTEASE, KRINGLE, DISEASE MUTATION, COMPLEX (SERINE PROTEASE-INHIBITOR), COMPLEX (SERINE PROTEASE-INHIBITOR) complex
H
SER
36
B
SER
22
A
1
H
PRO
37
B
PRO
23
-2.00
THRB_HUMAN
UNP
1
328
P00734
THRB_HUMAN
UNP
2
364
P00734
1LHE
PDB
3
1LHE
328
363
1LHE
-5
18
P00734
L
1
1
36
364
622
1LHE
16
247
P00734
H
2
1
259
54
65
1LHE
54
65
1LHE
I
3
1
12
4
3
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
LYS
81
B
LYS
77
H
MET
84
B
MET
80
H
LEU
64
B
LEU
59
H
ILE
68
B
ILE
63
H
GLN
30
B
GLN
15
H
ARG
35
B
ARG
20
H
GLU
39
B
GLU
25
H
SER
45
B
SER
31
H
TRP
51
B
TRP
37
H
THR
54
B
THR
40
H
ALA
104
B
ALA
101
H
LEU
108
B
LEU
105
H
LEU
85
B
LEU
81
H
ILE
90
B
ILE
86
H
LYS
135
B
LYS
135
H
GLY
140
B
GLY
140
H
GLN
156
B
GLN
161
H
PRO
161
B
PRO
166
H
MET
180
B
MET
185
H
ALA
183
B
ALA
188
H
GLY
226
B
GLY
238
H
HIS
230
B
HIS
242
H
TRP
207
B
TRP
219
H
TRP
215
B
TRP
227
H
PRO
198
B
PRO
208
H
LYS
202
B
LYS
212
BINDING SITE FOR RESIDUE DI3 H 400
Software
21
H
HIS
57
B
HIS
43
21
1_555
H
TYR
60
B
TYR
47
A
21
1_555
H
GLU
97
B
GLU
94
A
21
1_555
H
ASN
98
B
ASN
95
21
1_555
H
LEU
99
B
LEU
96
21
1_555
H
ILE
174
B
ILE
179
21
1_555
H
ASP
189
B
ASP
199
21
1_555
H
ALA
190
B
ALA
200
21
1_555
H
CYS
191
B
CYS
201
21
1_555
H
GLU
192
B
GLU
202
21
1_555
H
GLY
193
B
GLY
203
21
1_555
H
SER
195
B
SER
205
21
1_555
H
SER
214
B
SER
226
21
1_555
H
TRP
215
B
TRP
227
21
1_555
H
GLY
216
B
GLY
228
21
1_555
H
GLY
219
B
GLY
230
21
1_555
H
GLY
226
B
GLY
238
21
1_555
H
HOH
539
F
HOH
21
1_555
H
HOH
565
F
HOH
21
1_555
H
HOH
568
F
HOH
21
1_555
H
HOH
598
F
HOH
21
1_555
5
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