0.008249 0.004762 -0.000000 0.000000 0.009525 -0.000000 0.000000 0.000000 0.005367 0.00000 0.00000 0.00000 Bartfeld, D. Shimon, L. Couture, G.C. Rabinovich, D. Frolow, F. Levanon, D. Groner, Y. Shakked, Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 36 90.00 90.00 120.00 121.230 121.230 186.330 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing UK Structure STRUE6 2005 0969-2126 10 1395 1407 10.1016/S0969-2126(02)00853-5 12377125 DNA Recognition by the RUNX1 Transcription Factor Is Mediated by an Allosteric Transition in the RUNT Domain and by DNA Bending. 10.2210/pdb1ljm/pdb pdb_00001ljm 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors IMAGE PLATE 2000-01-18 RIGAKU RAXIS IV osmic mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU ULTRAX 18 14579.675 RUNX1 transcription factor Runt domain 2 man polymer 35.453 CHLORIDE ION 5 syn non-polymer 18.015 water 201 nat water Runt-related transcription factor 1, Acute myeloid leukemia 1 protein, Core-binding factor, alpha 2 subunit no no MVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVAR FNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQ MVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVAR FNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQ A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample human 9606 Homo sapiens 562 Escherichia coli PHS2 PV/8+lambdaPL+RBS RUNT-PV-8 1 4.52 72.76 VAPOR DIFFUSION, HANGING DROP 7.5 Ethanol, Sodium Chloride, Tris-HCl, Hepes, DTT, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K 292 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2002-11-06 1 1 2008-04-28 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2002-04-22 REL CL CHLORIDE ION HOH water 1E50 PDB ENTRY 1E50 PDB experimental model CL1 4003 2 CL CL 4003 A CL1 4001 2 CL CL 4001 B CL1 4002 2 CL CL 4002 B CL1 4004 2 CL CL 4004 B CL1 4005 2 CL CL 4005 B TIP 3001 3 HOH HOH 3001 A TIP 3002 3 HOH HOH 3002 A TIP 3003 3 HOH HOH 3003 A TIP 3004 3 HOH HOH 3004 A TIP 3006 3 HOH HOH 3006 A TIP 3007 3 HOH HOH 3007 A TIP 3008 3 HOH HOH 3008 A TIP 3009 3 HOH HOH 3009 A TIP 3010 3 HOH HOH 3010 A TIP 3011 3 HOH HOH 3011 A TIP 3012 3 HOH HOH 3012 A TIP 3018 3 HOH HOH 3018 A TIP 3022 3 HOH HOH 3022 A TIP 3024 3 HOH HOH 3024 A TIP 3026 3 HOH HOH 3026 A TIP 3027 3 HOH HOH 3027 A TIP 3029 3 HOH HOH 3029 A TIP 3030 3 HOH HOH 3030 A TIP 3031 3 HOH HOH 3031 A TIP 3032 3 HOH HOH 3032 A TIP 3033 3 HOH HOH 3033 A TIP 3034 3 HOH HOH 3034 A TIP 3035 3 HOH HOH 3035 A TIP 3037 3 HOH HOH 3037 A TIP 3038 3 HOH HOH 3038 A TIP 3040 3 HOH HOH 3040 A TIP 3041 3 HOH HOH 3041 A TIP 3042 3 HOH HOH 3042 A TIP 3043 3 HOH HOH 3043 A TIP 3044 3 HOH HOH 3044 A TIP 3045 3 HOH HOH 3045 A TIP 3048 3 HOH HOH 3048 A TIP 3051 3 HOH HOH 3051 A TIP 3054 3 HOH HOH 3054 A TIP 3058 3 HOH HOH 3058 A TIP 3060 3 HOH HOH 3060 A TIP 3071 3 HOH HOH 3071 A TIP 3074 3 HOH HOH 3074 A TIP 3075 3 HOH HOH 3075 A TIP 3077 3 HOH HOH 3077 A TIP 3081 3 HOH HOH 3081 A TIP 3082 3 HOH HOH 3082 A TIP 3083 3 HOH HOH 3083 A TIP 3084 3 HOH HOH 3084 A TIP 3085 3 HOH HOH 3085 A TIP 3089 3 HOH HOH 3089 A TIP 3093 3 HOH HOH 3093 A TIP 3094 3 HOH HOH 3094 A TIP 3095 3 HOH HOH 3095 A TIP 3096 3 HOH HOH 3096 A TIP 3097 3 HOH HOH 3097 A TIP 3099 3 HOH HOH 3099 A TIP 3101 3 HOH HOH 3101 A TIP 3102 3 HOH HOH 3102 A TIP 3103 3 HOH HOH 3103 A TIP 3105 3 HOH HOH 3105 A TIP 3106 3 HOH HOH 3106 A TIP 3107 3 HOH HOH 3107 A TIP 3108 3 HOH HOH 3108 A TIP 3109 3 HOH HOH 3109 A TIP 3110 3 HOH HOH 3110 A TIP 3111 3 HOH HOH 3111 A TIP 3113 3 HOH HOH 3113 A TIP 3114 3 HOH HOH 3114 A TIP 3115 3 HOH HOH 3115 A TIP 3117 3 HOH HOH 3117 A TIP 3118 3 HOH HOH 3118 A TIP 3119 3 HOH HOH 3119 A TIP 3120 3 HOH HOH 3120 A TIP 3121 3 HOH HOH 3121 A TIP 3124 3 HOH HOH 3124 A TIP 3125 3 HOH HOH 3125 A TIP 3126 3 HOH HOH 3126 A TIP 3129 3 HOH HOH 3129 A TIP 3130 3 HOH HOH 3130 A TIP 3131 3 HOH HOH 3131 A TIP 3135 3 HOH HOH 3135 A TIP 3136 3 HOH HOH 3136 A TIP 3137 3 HOH HOH 3137 A TIP 3138 3 HOH HOH 3138 A TIP 3140 3 HOH HOH 3140 A TIP 3141 3 HOH HOH 3141 A TIP 3143 3 HOH HOH 3143 A TIP 3149 3 HOH HOH 3149 A TIP 3150 3 HOH HOH 3150 A TIP 3152 3 HOH HOH 3152 A TIP 3153 3 HOH HOH 3153 A TIP 3154 3 HOH HOH 3154 A TIP 3156 3 HOH HOH 3156 A TIP 3157 3 HOH HOH 3157 A TIP 3159 3 HOH HOH 3159 A TIP 3160 3 HOH HOH 3160 A TIP 3161 3 HOH HOH 3161 A TIP 3162 3 HOH HOH 3162 A TIP 3164 3 HOH HOH 3164 A TIP 3165 3 HOH HOH 3165 A TIP 3166 3 HOH HOH 3166 A TIP 3167 3 HOH HOH 3167 A TIP 3168 3 HOH HOH 3168 A TIP 3169 3 HOH HOH 3169 A TIP 3172 3 HOH HOH 3172 A TIP 3176 3 HOH HOH 3176 A TIP 3178 3 HOH HOH 3178 A TIP 3179 3 HOH HOH 3179 A TIP 3181 3 HOH HOH 3181 A TIP 3182 3 HOH HOH 3182 A TIP 3183 3 HOH HOH 3183 A TIP 3184 3 HOH HOH 3184 A TIP 3185 3 HOH HOH 3185 A TIP 3188 3 HOH HOH 3188 A TIP 3189 3 HOH HOH 3189 A TIP 3192 3 HOH HOH 3192 A TIP 3193 3 HOH HOH 3193 A TIP 3194 3 HOH HOH 3194 A TIP 3195 3 HOH HOH 3195 A TIP 3196 3 HOH HOH 3196 A TIP 3197 3 HOH HOH 3197 A TIP 3198 3 HOH HOH 3198 A TIP 3199 3 HOH HOH 3199 A TIP 3005 3 HOH HOH 3005 B TIP 3013 3 HOH HOH 3013 B TIP 3014 3 HOH HOH 3014 B TIP 3015 3 HOH HOH 3015 B TIP 3016 3 HOH HOH 3016 B TIP 3017 3 HOH HOH 3017 B TIP 3019 3 HOH HOH 3019 B TIP 3020 3 HOH HOH 3020 B TIP 3021 3 HOH HOH 3021 B TIP 3023 3 HOH HOH 3023 B TIP 3025 3 HOH HOH 3025 B TIP 3028 3 HOH HOH 3028 B TIP 3036 3 HOH HOH 3036 B TIP 3039 3 HOH HOH 3039 B TIP 3046 3 HOH HOH 3046 B TIP 3047 3 HOH HOH 3047 B TIP 3049 3 HOH HOH 3049 B TIP 3050 3 HOH HOH 3050 B TIP 3052 3 HOH HOH 3052 B TIP 3053 3 HOH HOH 3053 B TIP 3055 3 HOH HOH 3055 B TIP 3056 3 HOH HOH 3056 B TIP 3057 3 HOH HOH 3057 B TIP 3059 3 HOH HOH 3059 B TIP 3061 3 HOH HOH 3061 B TIP 3062 3 HOH HOH 3062 B TIP 3063 3 HOH HOH 3063 B TIP 3064 3 HOH HOH 3064 B TIP 3065 3 HOH HOH 3065 B TIP 3066 3 HOH HOH 3066 B TIP 3067 3 HOH HOH 3067 B TIP 3068 3 HOH HOH 3068 B TIP 3069 3 HOH HOH 3069 B TIP 3070 3 HOH HOH 3070 B TIP 3072 3 HOH HOH 3072 B TIP 3073 3 HOH HOH 3073 B TIP 3076 3 HOH HOH 3076 B TIP 3078 3 HOH HOH 3078 B TIP 3079 3 HOH HOH 3079 B TIP 3080 3 HOH HOH 3080 B TIP 3086 3 HOH HOH 3086 B TIP 3087 3 HOH HOH 3087 B TIP 3088 3 HOH HOH 3088 B TIP 3090 3 HOH HOH 3090 B TIP 3091 3 HOH HOH 3091 B TIP 3092 3 HOH HOH 3092 B TIP 3098 3 HOH HOH 3098 B TIP 3100 3 HOH HOH 3100 B TIP 3104 3 HOH HOH 3104 B TIP 3112 3 HOH HOH 3112 B TIP 3116 3 HOH HOH 3116 B TIP 3122 3 HOH HOH 3122 B TIP 3123 3 HOH HOH 3123 B TIP 3127 3 HOH HOH 3127 B TIP 3128 3 HOH HOH 3128 B TIP 3132 3 HOH HOH 3132 B TIP 3133 3 HOH HOH 3133 B TIP 3134 3 HOH HOH 3134 B TIP 3139 3 HOH HOH 3139 B TIP 3142 3 HOH HOH 3142 B TIP 3144 3 HOH HOH 3144 B TIP 3145 3 HOH HOH 3145 B TIP 3146 3 HOH HOH 3146 B TIP 3147 3 HOH HOH 3147 B TIP 3148 3 HOH HOH 3148 B TIP 3151 3 HOH HOH 3151 B TIP 3155 3 HOH HOH 3155 B TIP 3158 3 HOH HOH 3158 B TIP 3163 3 HOH HOH 3163 B TIP 3170 3 HOH HOH 3170 B TIP 3171 3 HOH HOH 3171 B TIP 3173 3 HOH HOH 3173 B TIP 3174 3 HOH HOH 3174 B TIP 3175 3 HOH HOH 3175 B TIP 3177 3 HOH HOH 3177 B TIP 3180 3 HOH HOH 3180 B TIP 3186 3 HOH HOH 3186 B TIP 3187 3 HOH HOH 3187 B TIP 3190 3 HOH HOH 3190 B TIP 3191 3 HOH HOH 3191 B TIP 3200 3 HOH HOH 3200 B TIP 3201 3 HOH HOH 3201 B n 1 1051 A n 2 1052 A n 3 1053 A n 4 1054 A n 5 1055 A n 6 1056 A n 7 1057 A n 8 1058 A n 9 1059 A n 10 1060 A GLU 1061 n 11 GLU 1061 A LEU 1062 n 12 LEU 1062 A VAL 1063 n 13 VAL 1063 A ARG 1064 n 14 ARG 1064 A THR 1065 n 15 THR 1065 A ASP 1066 n 16 ASP 1066 A SER 1067 n 17 SER 1067 A PRO 1068 n 18 PRO 1068 A ASN 1069 n 19 ASN 1069 A PHE 1070 n 20 PHE 1070 A LEU 1071 n 21 LEU 1071 A CYS 1072 n 22 CYS 1072 A SER 1073 n 23 SER 1073 A VAL 1074 n 24 VAL 1074 A LEU 1075 n 25 LEU 1075 A PRO 1076 n 26 PRO 1076 A THR 1077 n 27 THR 1077 A HIS 1078 n 28 HIS 1078 A TRP 1079 n 29 TRP 1079 A ARG 1080 n 30 ARG 1080 A CYS 1081 n 31 CYS 1081 A ASN 1082 n 32 ASN 1082 A LYS 1083 n 33 LYS 1083 A THR 1084 n 34 THR 1084 A LEU 1085 n 35 LEU 1085 A PRO 1086 n 36 PRO 1086 A ILE 1087 n 37 ILE 1087 A ALA 1088 n 38 ALA 1088 A PHE 1089 n 39 PHE 1089 A LYS 1090 n 40 LYS 1090 A VAL 1091 n 41 VAL 1091 A VAL 1092 n 42 VAL 1092 A ALA 1093 n 43 ALA 1093 A LEU 1094 n 44 LEU 1094 A GLY 1095 n 45 GLY 1095 A ASP 1096 n 46 ASP 1096 A VAL 1097 n 47 VAL 1097 A PRO 1098 n 48 PRO 1098 A ASP 1099 n 49 ASP 1099 A GLY 1100 n 50 GLY 1100 A THR 1101 n 51 THR 1101 A LEU 1102 n 52 LEU 1102 A VAL 1103 n 53 VAL 1103 A THR 1104 n 54 THR 1104 A VAL 1105 n 55 VAL 1105 A MET 1106 n 56 MET 1106 A ALA 1107 n 57 ALA 1107 A GLY 1108 n 58 GLY 1108 A ASN 1109 n 59 ASN 1109 A ASP 1110 n 60 ASP 1110 A GLU 1111 n 61 GLU 1111 A ASN 1112 n 62 ASN 1112 A TYR 1113 n 63 TYR 1113 A SER 1114 n 64 SER 1114 A ALA 1115 n 65 ALA 1115 A GLU 1116 n 66 GLU 1116 A LEU 1117 n 67 LEU 1117 A ARG 1118 n 68 ARG 1118 A ASN 1119 n 69 ASN 1119 A ALA 1120 n 70 ALA 1120 A THR 1121 n 71 THR 1121 A ALA 1122 n 72 ALA 1122 A ALA 1123 n 73 ALA 1123 A MET 1124 n 74 MET 1124 A LYS 1125 n 75 LYS 1125 A ASN 1126 n 76 ASN 1126 A GLN 1127 n 77 GLN 1127 A VAL 1128 n 78 VAL 1128 A ALA 1129 n 79 ALA 1129 A ARG 1130 n 80 ARG 1130 A PHE 1131 n 81 PHE 1131 A ASN 1132 n 82 ASN 1132 A ASP 1133 n 83 ASP 1133 A LEU 1134 n 84 LEU 1134 A ARG 1135 n 85 ARG 1135 A PHE 1136 n 86 PHE 1136 A VAL 1137 n 87 VAL 1137 A GLY 1138 n 88 GLY 1138 A ARG 1139 n 89 ARG 1139 A SER 1140 n 90 SER 1140 A GLY 1141 n 91 GLY 1141 A ARG 1142 n 92 ARG 1142 A GLY 1143 n 93 GLY 1143 A LYS 1144 n 94 LYS 1144 A SER 1145 n 95 SER 1145 A PHE 1146 n 96 PHE 1146 A THR 1147 n 97 THR 1147 A LEU 1148 n 98 LEU 1148 A THR 1149 n 99 THR 1149 A ILE 1150 n 100 ILE 1150 A THR 1151 n 101 THR 1151 A VAL 1152 n 102 VAL 1152 A PHE 1153 n 103 PHE 1153 A THR 1154 n 104 THR 1154 A ASN 1155 n 105 ASN 1155 A PRO 1156 n 106 PRO 1156 A PRO 1157 n 107 PRO 1157 A GLN 1158 n 108 GLN 1158 A VAL 1159 n 109 VAL 1159 A ALA 1160 n 110 ALA 1160 A THR 1161 n 111 THR 1161 A TYR 1162 n 112 TYR 1162 A HIS 1163 n 113 HIS 1163 A ARG 1164 n 114 ARG 1164 A ALA 1165 n 115 ALA 1165 A ILE 1166 n 116 ILE 1166 A LYS 1167 n 117 LYS 1167 A ILE 1168 n 118 ILE 1168 A THR 1169 n 119 THR 1169 A VAL 1170 n 120 VAL 1170 A ASP 1171 n 121 ASP 1171 A GLY 1172 n 122 GLY 1172 A PRO 1173 n 123 PRO 1173 A ARG 1174 n 124 ARG 1174 A n 125 1175 A n 126 1176 A n 127 1177 A n 128 1178 A n 129 1179 A n 130 1180 A n 131 1181 A n 1 2051 B n 2 2052 B n 3 2053 B n 4 2054 B n 5 2055 B n 6 2056 B n 7 2057 B n 8 2058 B n 9 2059 B GLY 2060 n 10 GLY 2060 B GLU 2061 n 11 GLU 2061 B LEU 2062 n 12 LEU 2062 B VAL 2063 n 13 VAL 2063 B ARG 2064 n 14 ARG 2064 B THR 2065 n 15 THR 2065 B ASP 2066 n 16 ASP 2066 B SER 2067 n 17 SER 2067 B PRO 2068 n 18 PRO 2068 B ASN 2069 n 19 ASN 2069 B PHE 2070 n 20 PHE 2070 B LEU 2071 n 21 LEU 2071 B CYS 2072 n 22 CYS 2072 B SER 2073 n 23 SER 2073 B VAL 2074 n 24 VAL 2074 B LEU 2075 n 25 LEU 2075 B PRO 2076 n 26 PRO 2076 B THR 2077 n 27 THR 2077 B HIS 2078 n 28 HIS 2078 B TRP 2079 n 29 TRP 2079 B ARG 2080 n 30 ARG 2080 B CYS 2081 n 31 CYS 2081 B ASN 2082 n 32 ASN 2082 B LYS 2083 n 33 LYS 2083 B THR 2084 n 34 THR 2084 B LEU 2085 n 35 LEU 2085 B PRO 2086 n 36 PRO 2086 B ILE 2087 n 37 ILE 2087 B ALA 2088 n 38 ALA 2088 B PHE 2089 n 39 PHE 2089 B LYS 2090 n 40 LYS 2090 B VAL 2091 n 41 VAL 2091 B VAL 2092 n 42 VAL 2092 B ALA 2093 n 43 ALA 2093 B LEU 2094 n 44 LEU 2094 B GLY 2095 n 45 GLY 2095 B ASP 2096 n 46 ASP 2096 B VAL 2097 n 47 VAL 2097 B PRO 2098 n 48 PRO 2098 B ASP 2099 n 49 ASP 2099 B GLY 2100 n 50 GLY 2100 B THR 2101 n 51 THR 2101 B LEU 2102 n 52 LEU 2102 B VAL 2103 n 53 VAL 2103 B THR 2104 n 54 THR 2104 B VAL 2105 n 55 VAL 2105 B MET 2106 n 56 MET 2106 B ALA 2107 n 57 ALA 2107 B GLY 2108 n 58 GLY 2108 B ASN 2109 n 59 ASN 2109 B ASP 2110 n 60 ASP 2110 B GLU 2111 n 61 GLU 2111 B ASN 2112 n 62 ASN 2112 B TYR 2113 n 63 TYR 2113 B SER 2114 n 64 SER 2114 B ALA 2115 n 65 ALA 2115 B GLU 2116 n 66 GLU 2116 B LEU 2117 n 67 LEU 2117 B ARG 2118 n 68 ARG 2118 B ASN 2119 n 69 ASN 2119 B ALA 2120 n 70 ALA 2120 B THR 2121 n 71 THR 2121 B ALA 2122 n 72 ALA 2122 B ALA 2123 n 73 ALA 2123 B MET 2124 n 74 MET 2124 B LYS 2125 n 75 LYS 2125 B ASN 2126 n 76 ASN 2126 B GLN 2127 n 77 GLN 2127 B VAL 2128 n 78 VAL 2128 B ALA 2129 n 79 ALA 2129 B ARG 2130 n 80 ARG 2130 B PHE 2131 n 81 PHE 2131 B ASN 2132 n 82 ASN 2132 B ASP 2133 n 83 ASP 2133 B LEU 2134 n 84 LEU 2134 B ARG 2135 n 85 ARG 2135 B PHE 2136 n 86 PHE 2136 B VAL 2137 n 87 VAL 2137 B GLY 2138 n 88 GLY 2138 B ARG 2139 n 89 ARG 2139 B SER 2140 n 90 SER 2140 B GLY 2141 n 91 GLY 2141 B ARG 2142 n 92 ARG 2142 B GLY 2143 n 93 GLY 2143 B LYS 2144 n 94 LYS 2144 B SER 2145 n 95 SER 2145 B PHE 2146 n 96 PHE 2146 B THR 2147 n 97 THR 2147 B LEU 2148 n 98 LEU 2148 B THR 2149 n 99 THR 2149 B ILE 2150 n 100 ILE 2150 B THR 2151 n 101 THR 2151 B VAL 2152 n 102 VAL 2152 B PHE 2153 n 103 PHE 2153 B THR 2154 n 104 THR 2154 B ASN 2155 n 105 ASN 2155 B PRO 2156 n 106 PRO 2156 B PRO 2157 n 107 PRO 2157 B GLN 2158 n 108 GLN 2158 B VAL 2159 n 109 VAL 2159 B ALA 2160 n 110 ALA 2160 B THR 2161 n 111 THR 2161 B TYR 2162 n 112 TYR 2162 B HIS 2163 n 113 HIS 2163 B ARG 2164 n 114 ARG 2164 B ALA 2165 n 115 ALA 2165 B ILE 2166 n 116 ILE 2166 B LYS 2167 n 117 LYS 2167 B ILE 2168 n 118 ILE 2168 B THR 2169 n 119 THR 2169 B VAL 2170 n 120 VAL 2170 B ASP 2171 n 121 ASP 2171 B GLY 2172 n 122 GLY 2172 B PRO 2173 n 123 PRO 2173 B n 124 2174 B n 125 2175 B n 126 2176 B n 127 2177 B n 128 2178 B n 129 2179 B n 130 2180 B n 131 2181 B author_and_software_defined_assembly PISA 1 monomeric author_defined_assembly 1 monomeric software_defined_assembly PISA 4 tetrameric software_defined_assembly PISA 2 dimeric 5810 -119 20950 1860 -88 11440 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 10_455 y-1/3,x+1/3,-z+1/3 crystal symmetry operation -60.6150000000 34.9960865669 62.1100000000 A N VAL 1063 A N VAL 13 A O CYS 1072 A O CYS 22 A N LEU 1071 A N LEU 21 A O VAL 1092 A O VAL 42 A N VAL 1091 A N VAL 41 A O ALA 1129 A O ALA 79 A N TRP 1079 A N TRP 29 A O LYS 1167 A O LYS 117 A O ALA 1122 A O ALA 72 A N VAL 1103 A N VAL 53 A N MET 1106 A N MET 56 A O THR 1149 A O THR 99 A N ILE 1150 A N ILE 100 A O ALA 1160 A O ALA 110 A N ARG 1118 A N ARG 68 A O ARG 1135 A O ARG 85 B N VAL 2063 B N VAL 13 B O CYS 2072 B O CYS 22 B N LEU 2071 B N LEU 21 B O VAL 2092 B O VAL 42 B N VAL 2091 B N VAL 41 B O ALA 2129 B O ALA 79 B N TRP 2079 B N TRP 29 B O LYS 2167 B O LYS 117 B O ALA 2122 B O ALA 72 B N VAL 2103 B N VAL 53 B N GLY 2108 B N GLY 58 B O THR 2147 B O THR 97 B N ILE 2150 B N ILE 100 B O ALA 2160 B O ALA 110 1 A HOH 3114 H HOH 1 B HOH 3112 I HOH 1 B HOH 3148 I HOH 1 A MET 1051 A MET 1 1 Y 1 A VAL 1052 A VAL 2 1 Y 1 A GLU 1053 A GLU 3 1 Y 1 A VAL 1054 A VAL 4 1 Y 1 A LEU 1055 A LEU 5 1 Y 1 A ALA 1056 A ALA 6 1 Y 1 A ASP 1057 A ASP 7 1 Y 1 A HIS 1058 A HIS 8 1 Y 1 A PRO 1059 A PRO 9 1 Y 1 A GLY 1060 A GLY 10 1 Y 1 A GLU 1175 A GLU 125 1 Y 1 A PRO 1176 A PRO 126 1 Y 1 A ARG 1177 A ARG 127 1 Y 1 A ARG 1178 A ARG 128 1 Y 1 A HIS 1179 A HIS 129 1 Y 1 A ARG 1180 A ARG 130 1 Y 1 A GLN 1181 A GLN 131 1 Y 1 B MET 2051 B MET 1 1 Y 1 B VAL 2052 B VAL 2 1 Y 1 B GLU 2053 B GLU 3 1 Y 1 B VAL 2054 B VAL 4 1 Y 1 B LEU 2055 B LEU 5 1 Y 1 B ALA 2056 B ALA 6 1 Y 1 B ASP 2057 B ASP 7 1 Y 1 B HIS 2058 B HIS 8 1 Y 1 B PRO 2059 B PRO 9 1 Y 1 B ARG 2174 B ARG 124 1 Y 1 B GLU 2175 B GLU 125 1 Y 1 B PRO 2176 B PRO 126 1 Y 1 B ARG 2177 B ARG 127 1 Y 1 B ARG 2178 B ARG 128 1 Y 1 B HIS 2179 B HIS 129 1 Y 1 B ARG 2180 B ARG 130 1 Y 1 B GLN 2181 B GLN 131 1 Y 1 A THR 1065 -103.10 -166.72 1 A ASN 1082 57.27 11.93 1 B THR 2065 -116.15 -168.58 1 B ASP 2096 61.79 84.62 1 B SER 2114 -164.46 98.15 1 B ASP 2133 49.30 70.13 40.5 0.2490000 0.1930000 0.1947000 0.1947000 2.5 43 842 17501 17379 99.3 RANDOM 1 isotropic THROUGHOUT 0 0 MOLECULAR REPLACEMENT PDB ENTRY 1E50 Engh & Huber 0.39 0.29 43.00 0.39 0.36 2.5 43 201 1965 5 0 1759 1.2 0.007 3.8 26.5 0.78 31.5 2.5 43.0 1LJM 17501 17379 -3.0 0.0710000 0.0710000 1 17.2 13.9 99.3 0.2950000 2.5 2.54 2.7 0.2950000 99.3 data reduction DENZO data scaling SCALEPACK model building MTF/ULTIMA refinement CNS phasing MTF phasing ULTIMA DNA recognition is mediated by conformational transition and by DNA bending 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N TRANSCRIPTION immunoglobulin fold, beta-sandwich, TRANSCRIPTION A ASN 1155 A ASN 105 1 A PRO 1156 A PRO 106 0.78 B ASN 2155 B ASN 105 1 B PRO 2156 B PRO 106 0.12 RUNX1_HUMAN UNP 1 51 Q01196 MVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVAR FNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQ 51 181 1LJM 1051 1181 Q01196 A 1 1 131 51 181 1LJM 2051 2181 Q01196 B 1 1 131 4 2 4 2 4 2 4 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A LEU 1062 A LEU 12 A ARG 1064 A ARG 14 A PHE 1070 A PHE 20 A SER 1073 A SER 23 A LYS 1090 A LYS 40 A ALA 1093 A ALA 43 A VAL 1128 A VAL 78 A ARG 1130 A ARG 80 A HIS 1078 A HIS 28 A ARG 1080 A ARG 30 A LYS 1167 A LYS 117 A THR 1169 A THR 119 A THR 1121 A THR 71 A ALA 1123 A ALA 73 A LEU 1102 A LEU 52 A GLY 1108 A GLY 58 A THR 1147 A THR 97 A VAL 1152 A VAL 102 A GLN 1158 A GLN 108 A THR 1161 A THR 111 A LEU 1117 A LEU 67 A ARG 1118 A ARG 68 A ARG 1135 A ARG 85 A PHE 1136 A PHE 86 B VAL 2063 B VAL 13 B ARG 2064 B ARG 14 B PHE 2070 B PHE 20 B CYS 2072 B CYS 22 B LYS 2090 B LYS 40 B ALA 2093 B ALA 43 B VAL 2128 B VAL 78 B ARG 2130 B ARG 80 B HIS 2078 B HIS 28 B ARG 2080 B ARG 30 B LYS 2167 B LYS 117 B THR 2169 B THR 119 B THR 2121 B THR 71 B ALA 2123 B ALA 73 B LEU 2102 B LEU 52 B GLY 2108 B GLY 58 B THR 2147 B THR 97 B VAL 2152 B VAL 102 B GLN 2158 B GLN 108 B THR 2161 B THR 111 BINDING SITE FOR RESIDUE CL B 4001 B CL 4001 Software 3 BINDING SITE FOR RESIDUE CL B 4002 B CL 4002 Software 2 BINDING SITE FOR RESIDUE CL A 4003 A CL 4003 Software 3 BINDING SITE FOR RESIDUE CL B 4004 B CL 4004 Software 4 BINDING SITE FOR RESIDUE CL B 4005 B CL 4005 Software 3 B THR 2154 B THR 104 3 10_455 B ASN 2155 B ASN 105 3 1_555 B ASN 2155 B ASN 105 3 10_455 B GLN 2158 B GLN 108 2 1_555 B HOH 3056 I HOH 2 1_555 A ALA 1115 A ALA 65 3 1_555 A GLU 1116 A GLU 66 3 1_555 A GLY 1138 A GLY 88 3 1_555 B ASN 2112 B ASN 62 4 1_555 B ALA 2115 B ALA 65 4 1_555 B GLU 2116 B GLU 66 4 1_555 B GLY 2138 B GLY 88 4 1_555 B ARG 2142 B ARG 92 3 1_555 B THR 2169 B THR 119 3 1_555 B VAL 2170 B VAL 120 3 1_555 155 H 3 2