1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Xia, Y.
Yee, A.
Semesi, A.
Arrowsmith, C.H.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
to be published
0353
Solution Structure of Hypothetical Protein tm1112
10.2210/pdb1lkn/pdb
pdb_00001lkn
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
10774.417
hypothetical protein tm1112
1
man
polymer
no
no
MEVKIEKPTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLE
PVRKHYNLF
MEVKIEKPTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLE
PVRKHYNLF
A
VT74
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermotoga
Escherichia
sample
tm1112
2336
Thermotoga maritima
562
Escherichia coli
bl21de3(magic gold)
plasmid
pet15b
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
database_2
pdbx_database_related
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2003-06-24
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_related.db_name
Y
RCSB
Y
RCSB
2002-04-25
REL
REL
The structure was determined using triple-resonance NMR spectroscopy
all calculated structures submitted,back calculated data agree with experimental NOESY spectrum,structures with the lowest energy
30
10
3D_13C/15N-separated_NOESY
3D_15N/15N-separated_NOESY
HNHA
20uM Zn2+
6.5
ambient
298
K
The structures are based on a total of 2619 restraints, in which 2508 are NOE-derived
distance constraints, 111 are dihedral angle restraints from TALOS analysis and HNHA
experiment.
simulated annealing
1
lowest energy
1mM tm1112 U-15N,13C; 25mM phosphate buffer NA; 95% H2O, 5% D2O
95% H2O/5% D2O
F. Delaglio
processing
NMRPipe
2.1
T. D. Goddard and D. G. Kneller
data analysis
Sparky
SPARKY 3
M. NILGES, A.T. Brunger
structure solution
ARIA BASED ON XPLOR3.851
M. NILGES, A.T. Brunger
refinement
ARIA BASED ON XPLOR3.851
500
Varian
INOVA
600
Varian
INOVA
MET
1
n
1
MET
1
A
GLU
2
n
2
GLU
2
A
VAL
3
n
3
VAL
3
A
LYS
4
n
4
LYS
4
A
ILE
5
n
5
ILE
5
A
GLU
6
n
6
GLU
6
A
LYS
7
n
7
LYS
7
A
PRO
8
n
8
PRO
8
A
THR
9
n
9
THR
9
A
PRO
10
n
10
PRO
10
A
GLU
11
n
11
GLU
11
A
LYS
12
n
12
LYS
12
A
LEU
13
n
13
LEU
13
A
LYS
14
n
14
LYS
14
A
GLU
15
n
15
GLU
15
A
LEU
16
n
16
LEU
16
A
SER
17
n
17
SER
17
A
VAL
18
n
18
VAL
18
A
GLU
19
n
19
GLU
19
A
LYS
20
n
20
LYS
20
A
TRP
21
n
21
TRP
21
A
PRO
22
n
22
PRO
22
A
ILE
23
n
23
ILE
23
A
TRP
24
n
24
TRP
24
A
GLU
25
n
25
GLU
25
A
LYS
26
n
26
LYS
26
A
GLU
27
n
27
GLU
27
A
VAL
28
n
28
VAL
28
A
SER
29
n
29
SER
29
A
GLU
30
n
30
GLU
30
A
PHE
31
n
31
PHE
31
A
ASP
32
n
32
ASP
32
A
TRP
33
n
33
TRP
33
A
TYR
34
n
34
TYR
34
A
TYR
35
n
35
TYR
35
A
ASP
36
n
36
ASP
36
A
THR
37
n
37
THR
37
A
ASN
38
n
38
ASN
38
A
GLU
39
n
39
GLU
39
A
THR
40
n
40
THR
40
A
CYS
41
n
41
CYS
41
A
TYR
42
n
42
TYR
42
A
ILE
43
n
43
ILE
43
A
LEU
44
n
44
LEU
44
A
GLU
45
n
45
GLU
45
A
GLY
46
n
46
GLY
46
A
LYS
47
n
47
LYS
47
A
VAL
48
n
48
VAL
48
A
GLU
49
n
49
GLU
49
A
VAL
50
n
50
VAL
50
A
THR
51
n
51
THR
51
A
THR
52
n
52
THR
52
A
GLU
53
n
53
GLU
53
A
ASP
54
n
54
ASP
54
A
GLY
55
n
55
GLY
55
A
LYS
56
n
56
LYS
56
A
LYS
57
n
57
LYS
57
A
TYR
58
n
58
TYR
58
A
VAL
59
n
59
VAL
59
A
ILE
60
n
60
ILE
60
A
GLU
61
n
61
GLU
61
A
LYS
62
n
62
LYS
62
A
GLY
63
n
63
GLY
63
A
ASP
64
n
64
ASP
64
A
LEU
65
n
65
LEU
65
A
VAL
66
n
66
VAL
66
A
THR
67
n
67
THR
67
A
PHE
68
n
68
PHE
68
A
PRO
69
n
69
PRO
69
A
LYS
70
n
70
LYS
70
A
GLY
71
n
71
GLY
71
A
LEU
72
n
72
LEU
72
A
ARG
73
n
73
ARG
73
A
CYS
74
n
74
CYS
74
A
ARG
75
n
75
ARG
75
A
TRP
76
n
76
TRP
76
A
LYS
77
n
77
LYS
77
A
VAL
78
n
78
VAL
78
A
LEU
79
n
79
LEU
79
A
GLU
80
n
80
GLU
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ARG
83
n
83
ARG
83
A
LYS
84
n
84
LYS
84
A
HIS
85
n
85
HIS
85
A
TYR
86
n
86
TYR
86
A
ASN
87
n
87
ASN
87
A
LEU
88
n
88
LEU
88
A
PHE
89
n
89
PHE
89
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
26
A
O
LYS
26
A
N
VAL
82
A
N
VAL
82
A
N
TRP
76
A
N
TRP
76
A
O
PHE
31
A
O
PHE
31
A
N
TRP
33
A
N
TRP
33
A
O
CYS
74
A
O
CYS
74
A
O
ASN
87
A
O
ASN
87
A
N
THR
40
A
N
THR
40
A
N
VAL
50
A
N
VAL
50
A
O
TYR
58
A
O
TYR
58
A
N
ILE
60
A
N
ILE
60
A
O
VAL
48
A
O
VAL
48
A
O
CYS
41
A
O
CYS
41
A
N
VAL
66
A
N
VAL
66
1
A
A
O
H
TYR
HIS
42
85
1.59
2
A
A
H
O
ILE
ASP
43
64
1.59
3
A
A
O
H
TYR
HIS
42
85
1.55
3
A
A
O
H
VAL
TRP
18
21
1.59
4
A
A
HG22
HH
THR
TYR
52
58
1.30
4
A
A
O
H
PHE
TRP
31
76
1.59
5
A
A
O
H
TYR
HIS
42
85
1.55
5
A
A
O
H
GLU
SER
27
29
1.58
6
A
A
O
H
GLU
SER
27
29
1.57
6
A
A
O
H
LYS
LEU
47
79
1.57
6
A
A
O
H
TYR
HIS
42
85
1.58
7
A
A
HG22
HH
THR
TYR
52
58
1.31
7
A
A
O
H
GLU
SER
27
29
1.56
7
A
A
O
H
TYR
HIS
42
85
1.60
8
A
A
H
O
PHE
TRP
31
76
1.56
8
A
A
O
H
TYR
HIS
42
85
1.58
9
A
A
HG21
HH
THR
TYR
52
58
1.33
9
A
A
H
O
LEU
ARG
44
83
1.60
10
A
A
HH
H
TYR
GLU
35
39
0.92
10
A
A
OH
H
TYR
GLU
35
39
1.25
10
A
A
O
HZ3
GLU
LYS
49
77
1.49
10
A
A
O
H
TYR
HIS
42
85
1.55
10
A
A
HH
N
TYR
GLU
35
39
1.58
10
A
A
O
H
GLU
SER
27
29
1.59
10
A
A
CE1
CZ
TYR
TYR
35
35
0.078
0.013
1.381
1.459
N
10
A
A
CZ
CE2
TYR
TYR
35
35
-0.081
0.013
1.381
1.300
N
1
A
PRO
10
-37.37
-30.62
1
A
SER
17
-28.68
88.02
1
A
PRO
22
-53.74
-179.73
1
A
VAL
28
-53.73
62.97
1
A
SER
29
-94.93
-155.86
1
A
ASP
36
-159.45
26.16
1
A
THR
37
170.31
141.56
1
A
ASN
38
-58.40
93.61
1
A
GLU
45
177.15
100.79
1
A
LYS
62
47.65
110.82
1
A
PRO
81
-34.53
121.23
1
A
ASN
87
-164.07
73.24
2
A
PRO
10
-39.47
-30.13
2
A
SER
17
-29.59
88.65
2
A
PRO
22
-49.90
179.24
2
A
VAL
28
-63.57
45.57
2
A
GLU
45
-169.55
100.68
2
A
LYS
62
49.78
115.77
2
A
LEU
72
-45.18
93.39
2
A
PRO
81
-35.07
118.45
2
A
ASN
87
-157.50
54.19
3
A
GLU
2
-174.50
39.13
3
A
SER
17
-26.22
89.51
3
A
PRO
22
-52.38
-171.55
3
A
VAL
28
26.54
43.22
3
A
ASP
36
-152.35
20.14
3
A
GLU
45
-172.03
106.29
3
A
LYS
62
58.57
106.71
3
A
ASN
87
-151.27
73.43
4
A
PRO
10
-39.71
-29.64
4
A
SER
17
-29.10
88.66
4
A
PRO
22
-48.32
174.54
4
A
VAL
28
-64.34
47.65
4
A
ASP
36
-152.09
17.73
4
A
GLU
45
179.16
137.05
4
A
LYS
62
25.77
111.59
4
A
LEU
72
-46.84
91.53
4
A
PRO
81
-35.01
117.79
4
A
ASN
87
-170.86
60.56
5
A
SER
17
-29.50
88.28
5
A
PRO
22
-51.16
-174.62
5
A
VAL
28
-49.06
59.11
5
A
SER
29
-95.51
-158.65
5
A
ASP
36
-150.15
21.43
5
A
ASN
38
-69.92
97.12
5
A
GLU
45
-171.87
104.65
5
A
LYS
62
30.96
110.82
5
A
LYS
70
-44.09
107.96
5
A
PRO
81
-42.37
107.89
5
A
ASN
87
-150.10
57.05
6
A
SER
17
-27.32
88.47
6
A
PRO
22
-56.60
170.45
6
A
VAL
28
-59.65
51.00
6
A
ASP
36
-177.18
35.44
6
A
THR
37
176.44
121.83
6
A
ASN
38
-52.95
92.96
6
A
GLU
45
178.41
105.69
6
A
LYS
62
31.75
108.71
6
A
PRO
81
-39.67
115.04
6
A
ASN
87
-162.56
54.39
7
A
GLU
2
173.13
118.90
7
A
SER
17
-28.66
88.20
7
A
PRO
22
-56.32
172.76
7
A
VAL
28
-56.61
52.68
7
A
ASP
36
-149.94
30.91
7
A
GLU
45
-178.44
102.28
7
A
LYS
62
51.59
114.47
7
A
GLU
80
-170.39
148.39
7
A
PRO
81
-39.71
115.58
7
A
ASN
87
-161.90
62.36
8
A
GLU
2
-104.58
48.28
8
A
PRO
10
-38.75
-31.31
8
A
SER
17
-27.27
94.49
8
A
VAL
18
-92.00
33.79
8
A
VAL
28
-56.70
61.10
8
A
SER
29
-94.08
-158.13
8
A
ASP
36
-161.61
28.94
8
A
THR
37
170.26
164.99
8
A
GLU
45
175.32
107.02
8
A
LYS
62
19.67
112.97
8
A
LEU
72
-46.66
101.29
8
A
PRO
81
-38.15
117.92
8
A
ASN
87
-150.10
61.65
9
A
PRO
8
-49.25
152.88
9
A
SER
17
-27.18
91.41
9
A
VAL
28
-63.32
46.21
9
A
ASP
36
-175.97
33.03
9
A
THR
37
166.43
158.96
9
A
GLU
45
176.54
104.82
9
A
LYS
62
12.12
111.91
9
A
PRO
81
-34.77
121.34
9
A
ASN
87
-158.06
59.80
10
A
GLU
2
-169.33
53.94
10
A
SER
17
-28.29
88.49
10
A
VAL
28
-56.71
56.37
10
A
SER
29
-97.43
-156.73
10
A
ASN
38
-40.98
109.48
10
A
GLU
45
-176.24
112.77
10
A
LYS
62
51.80
116.43
10
A
LYS
70
-31.60
111.84
10
A
LEU
72
-37.44
126.60
10
A
ASN
87
-169.58
69.64
Solution NMR Structure of Protein TM_1112 from Thermotoga maritima. Ontario Centre for Structural Proteomics Target TM1112_1_89; Northeast Structural Genomics Consortium Target VT74.
1
N
N
A
THR
9
A
THR
9
HELX_P
A
LEU
16
A
LEU
16
1
1
8
A
SER
17
A
SER
17
HELX_P
A
TRP
21
A
TRP
21
5
2
5
structural genomics, unknown function
BETA BARREL, structural genomics, OCSP, NESG, PROTEIN STRUCTURE INITIATIVE, PSI, Northeast Structural Genomics Consortium, unknown function
A
THR
9
A
THR
9
9
A
PRO
10
A
PRO
10
10.19
Q9X0J6_THEMA
UNP
1
1
Q9X0J6
MEVKIEKPTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLE
PVRKHYNLF
1
89
1LKN
1
89
Q9X0J6
A
1
1
89
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
23
A
ILE
23
A
LYS
26
A
LYS
26
A
ARG
73
A
ARG
73
A
LEU
88
A
LEU
88
A
GLU
30
A
GLU
30
A
TYR
34
A
TYR
34
A
ARG
73
A
ARG
73
A
LEU
88
A
LEU
88
A
GLU
39
A
GLU
39
A
THR
52
A
THR
52
A
LYS
57
A
LYS
57
A
GLU
61
A
GLU
61
A
GLU
39
A
GLU
39
A
THR
52
A
THR
52
A
LEU
65
A
LEU
65
A
THR
67
A
THR
67