0.014218
0.000000
0.000000
0.000000
0.013926
0.000000
0.000000
0.000000
0.005180
0.00000
0.00000
0.00000
Rangarajan, E.S.
Sivaraman, J.
Matte, A.
Cygler, M.
Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
70.335
71.809
193.067
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
48
737
740
10.1002/prot.10203
12211039
Crystal structure of D-ribose-5-phosphate isomerase (RpiA) from Escherichia coli
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-02-17
ADSC QUANTUM 4
SILICON
MAD
M
x-ray
1
0.97193
1.0
X8C
NSLS
0.97193
SYNCHROTRON
NSLS BEAMLINE X8C
23211.604
Ribose 5-phosphate isomerase A
5.3.1.6
2
man
polymer
18.015
water
129
nat
water
RPIA, Phosphoriboisomerase A
no
yes
(MSE)TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGT(MSE)KGQIEGAVSSSDASTEKLKSLGIHVFDLNE
VDSLGIYVDGADEINGH(MSE)Q(MSE)IKGGGAALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIP(MSE)AR
SAVARQLVKLGGRPEYRQGVVTDNGNVILDVHG(MSE)EILDPIA(MSE)ENAINAIPGVVTVGLFANRGADVALIGTPD
GVKTIVK
MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYV
DGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGV
VTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK
A,B
RPIA_ECOLI
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
MC1061
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
DL41
1
2.62
53.14
VAPOR DIFFUSION, HANGING DROP
5.0
Ammonium sulfate, Isopropanol, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
Montreal-Kingston Bacterial Structural Genomics Initiative
BSGI
software
repository
Initial release
Version format compliance
Version format compliance
Refinement description
1
0
2002-05-08
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
Y
RCSB
Y
RCSB
2002-04-26
REL
REL
HOH
water
HOH
303
2
HOH
HOH
303
A
HOH
304
2
HOH
HOH
304
A
HOH
308
2
HOH
HOH
308
A
HOH
311
2
HOH
HOH
311
A
HOH
312
2
HOH
HOH
312
A
HOH
314
2
HOH
HOH
314
A
HOH
317
2
HOH
HOH
317
A
HOH
320
2
HOH
HOH
320
A
HOH
321
2
HOH
HOH
321
A
HOH
325
2
HOH
HOH
325
A
HOH
328
2
HOH
HOH
328
A
HOH
329
2
HOH
HOH
329
A
HOH
330
2
HOH
HOH
330
A
HOH
331
2
HOH
HOH
331
A
HOH
332
2
HOH
HOH
332
A
HOH
341
2
HOH
HOH
341
A
HOH
343
2
HOH
HOH
343
A
HOH
346
2
HOH
HOH
346
A
HOH
347
2
HOH
HOH
347
A
HOH
348
2
HOH
HOH
348
A
HOH
349
2
HOH
HOH
349
A
HOH
351
2
HOH
HOH
351
A
HOH
352
2
HOH
HOH
352
A
HOH
355
2
HOH
HOH
355
A
HOH
356
2
HOH
HOH
356
A
HOH
357
2
HOH
HOH
357
A
HOH
363
2
HOH
HOH
363
A
HOH
366
2
HOH
HOH
366
A
HOH
370
2
HOH
HOH
370
A
HOH
372
2
HOH
HOH
372
A
HOH
373
2
HOH
HOH
373
A
HOH
376
2
HOH
HOH
376
A
HOH
377
2
HOH
HOH
377
A
HOH
379
2
HOH
HOH
379
A
HOH
382
2
HOH
HOH
382
A
HOH
384
2
HOH
HOH
384
A
HOH
387
2
HOH
HOH
387
A
HOH
388
2
HOH
HOH
388
A
HOH
390
2
HOH
HOH
390
A
HOH
391
2
HOH
HOH
391
A
HOH
393
2
HOH
HOH
393
A
HOH
394
2
HOH
HOH
394
A
HOH
396
2
HOH
HOH
396
A
HOH
405
2
HOH
HOH
405
A
HOH
410
2
HOH
HOH
410
A
HOH
411
2
HOH
HOH
411
A
HOH
416
2
HOH
HOH
416
A
HOH
423
2
HOH
HOH
423
A
HOH
425
2
HOH
HOH
425
A
HOH
427
2
HOH
HOH
427
A
HOH
429
2
HOH
HOH
429
A
HOH
430
2
HOH
HOH
430
A
HOH
431
2
HOH
HOH
431
A
HOH
301
2
HOH
HOH
301
B
HOH
302
2
HOH
HOH
302
B
HOH
305
2
HOH
HOH
305
B
HOH
306
2
HOH
HOH
306
B
HOH
309
2
HOH
HOH
309
B
HOH
310
2
HOH
HOH
310
B
HOH
313
2
HOH
HOH
313
B
HOH
315
2
HOH
HOH
315
B
HOH
316
2
HOH
HOH
316
B
HOH
318
2
HOH
HOH
318
B
HOH
319
2
HOH
HOH
319
B
HOH
322
2
HOH
HOH
322
B
HOH
323
2
HOH
HOH
323
B
HOH
324
2
HOH
HOH
324
B
HOH
326
2
HOH
HOH
326
B
HOH
327
2
HOH
HOH
327
B
HOH
333
2
HOH
HOH
333
B
HOH
334
2
HOH
HOH
334
B
HOH
335
2
HOH
HOH
335
B
HOH
336
2
HOH
HOH
336
B
HOH
337
2
HOH
HOH
337
B
HOH
338
2
HOH
HOH
338
B
HOH
339
2
HOH
HOH
339
B
HOH
340
2
HOH
HOH
340
B
HOH
344
2
HOH
HOH
344
B
HOH
345
2
HOH
HOH
345
B
HOH
350
2
HOH
HOH
350
B
HOH
353
2
HOH
HOH
353
B
HOH
354
2
HOH
HOH
354
B
HOH
358
2
HOH
HOH
358
B
HOH
359
2
HOH
HOH
359
B
HOH
360
2
HOH
HOH
360
B
HOH
361
2
HOH
HOH
361
B
HOH
362
2
HOH
HOH
362
B
HOH
364
2
HOH
HOH
364
B
HOH
365
2
HOH
HOH
365
B
HOH
367
2
HOH
HOH
367
B
HOH
368
2
HOH
HOH
368
B
HOH
369
2
HOH
HOH
369
B
HOH
371
2
HOH
HOH
371
B
HOH
374
2
HOH
HOH
374
B
HOH
375
2
HOH
HOH
375
B
HOH
378
2
HOH
HOH
378
B
HOH
380
2
HOH
HOH
380
B
HOH
381
2
HOH
HOH
381
B
HOH
383
2
HOH
HOH
383
B
HOH
385
2
HOH
HOH
385
B
HOH
386
2
HOH
HOH
386
B
HOH
389
2
HOH
HOH
389
B
HOH
392
2
HOH
HOH
392
B
HOH
395
2
HOH
HOH
395
B
HOH
397
2
HOH
HOH
397
B
HOH
398
2
HOH
HOH
398
B
HOH
399
2
HOH
HOH
399
B
HOH
400
2
HOH
HOH
400
B
HOH
401
2
HOH
HOH
401
B
HOH
402
2
HOH
HOH
402
B
HOH
403
2
HOH
HOH
403
B
HOH
404
2
HOH
HOH
404
B
HOH
406
2
HOH
HOH
406
B
HOH
407
2
HOH
HOH
407
B
HOH
408
2
HOH
HOH
408
B
HOH
409
2
HOH
HOH
409
B
HOH
412
2
HOH
HOH
412
B
HOH
413
2
HOH
HOH
413
B
HOH
414
2
HOH
HOH
414
B
HOH
415
2
HOH
HOH
415
B
HOH
417
2
HOH
HOH
417
B
HOH
418
2
HOH
HOH
418
B
HOH
419
2
HOH
HOH
419
B
HOH
420
2
HOH
HOH
420
B
HOH
421
2
HOH
HOH
421
B
HOH
422
2
HOH
HOH
422
B
HOH
424
2
HOH
HOH
424
B
HOH
426
2
HOH
HOH
426
B
HOH
428
2
HOH
HOH
428
B
MSE
1
n
1
MSE
1
A
THR
2
n
2
THR
2
A
GLN
3
n
3
GLN
3
A
ASP
4
n
4
ASP
4
A
GLU
5
n
5
GLU
5
A
LEU
6
n
6
LEU
6
A
LYS
7
n
7
LYS
7
A
LYS
8
n
8
LYS
8
A
ALA
9
n
9
ALA
9
A
VAL
10
n
10
VAL
10
A
GLY
11
n
11
GLY
11
A
TRP
12
n
12
TRP
12
A
ALA
13
n
13
ALA
13
A
ALA
14
n
14
ALA
14
A
LEU
15
n
15
LEU
15
A
GLN
16
n
16
GLN
16
A
TYR
17
n
17
TYR
17
A
VAL
18
n
18
VAL
18
A
GLN
19
n
19
GLN
19
A
PRO
20
n
20
PRO
20
A
GLY
21
n
21
GLY
21
A
THR
22
n
22
THR
22
A
ILE
23
n
23
ILE
23
A
VAL
24
n
24
VAL
24
A
GLY
25
n
25
GLY
25
A
VAL
26
n
26
VAL
26
A
GLY
27
n
27
GLY
27
A
THR
28
n
28
THR
28
A
GLY
29
n
29
GLY
29
A
SER
30
n
30
SER
30
A
THR
31
n
31
THR
31
A
ALA
32
n
32
ALA
32
A
ALA
33
n
33
ALA
33
A
HIS
34
n
34
HIS
34
A
PHE
35
n
35
PHE
35
A
ILE
36
n
36
ILE
36
A
ASP
37
n
37
ASP
37
A
ALA
38
n
38
ALA
38
A
LEU
39
n
39
LEU
39
A
GLY
40
n
40
GLY
40
A
THR
41
n
41
THR
41
A
MSE
42
n
42
MSE
42
A
LYS
43
n
43
LYS
43
A
GLY
44
n
44
GLY
44
A
GLN
45
n
45
GLN
45
A
ILE
46
n
46
ILE
46
A
GLU
47
n
47
GLU
47
A
GLY
48
n
48
GLY
48
A
ALA
49
n
49
ALA
49
A
VAL
50
n
50
VAL
50
A
SER
51
n
51
SER
51
A
SER
52
n
52
SER
52
A
SER
53
n
53
SER
53
A
ASP
54
n
54
ASP
54
A
ALA
55
n
55
ALA
55
A
SER
56
n
56
SER
56
A
THR
57
n
57
THR
57
A
GLU
58
n
58
GLU
58
A
LYS
59
n
59
LYS
59
A
LEU
60
n
60
LEU
60
A
LYS
61
n
61
LYS
61
A
SER
62
n
62
SER
62
A
LEU
63
n
63
LEU
63
A
GLY
64
n
64
GLY
64
A
ILE
65
n
65
ILE
65
A
HIS
66
n
66
HIS
66
A
VAL
67
n
67
VAL
67
A
PHE
68
n
68
PHE
68
A
ASP
69
n
69
ASP
69
A
LEU
70
n
70
LEU
70
A
ASN
71
n
71
ASN
71
A
GLU
72
n
72
GLU
72
A
VAL
73
n
73
VAL
73
A
ASP
74
n
74
ASP
74
A
SER
75
n
75
SER
75
A
LEU
76
n
76
LEU
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
TYR
79
n
79
TYR
79
A
VAL
80
n
80
VAL
80
A
ASP
81
n
81
ASP
81
A
GLY
82
n
82
GLY
82
A
ALA
83
n
83
ALA
83
A
ASP
84
n
84
ASP
84
A
GLU
85
n
85
GLU
85
A
ILE
86
n
86
ILE
86
A
ASN
87
n
87
ASN
87
A
GLY
88
n
88
GLY
88
A
HIS
89
n
89
HIS
89
A
MSE
90
n
90
MSE
90
A
GLN
91
n
91
GLN
91
A
MSE
92
n
92
MSE
92
A
ILE
93
n
93
ILE
93
A
LYS
94
n
94
LYS
94
A
GLY
95
n
95
GLY
95
A
GLY
96
n
96
GLY
96
A
GLY
97
n
97
GLY
97
A
ALA
98
n
98
ALA
98
A
ALA
99
n
99
ALA
99
A
LEU
100
n
100
LEU
100
A
THR
101
n
101
THR
101
A
ARG
102
n
102
ARG
102
A
GLU
103
n
103
GLU
103
A
LYS
104
n
104
LYS
104
A
ILE
105
n
105
ILE
105
A
ILE
106
n
106
ILE
106
A
ALA
107
n
107
ALA
107
A
SER
108
n
108
SER
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
GLU
111
n
111
GLU
111
A
LYS
112
n
112
LYS
112
A
PHE
113
n
113
PHE
113
A
ILE
114
n
114
ILE
114
A
CYS
115
n
115
CYS
115
A
ILE
116
n
116
ILE
116
A
ALA
117
n
117
ALA
117
A
ASP
118
n
118
ASP
118
A
ALA
119
n
119
ALA
119
A
SER
120
n
120
SER
120
A
LYS
121
n
121
LYS
121
A
GLN
122
n
122
GLN
122
A
VAL
123
n
123
VAL
123
A
ASP
124
n
124
ASP
124
A
ILE
125
n
125
ILE
125
A
LEU
126
n
126
LEU
126
A
GLY
127
n
127
GLY
127
A
LYS
128
n
128
LYS
128
A
PHE
129
n
129
PHE
129
A
PRO
130
n
130
PRO
130
A
LEU
131
n
131
LEU
131
A
PRO
132
n
132
PRO
132
A
VAL
133
n
133
VAL
133
A
GLU
134
n
134
GLU
134
A
VAL
135
n
135
VAL
135
A
ILE
136
n
136
ILE
136
A
PRO
137
n
137
PRO
137
A
MSE
138
n
138
MSE
138
A
ALA
139
n
139
ALA
139
A
ARG
140
n
140
ARG
140
A
SER
141
n
141
SER
141
A
ALA
142
n
142
ALA
142
A
VAL
143
n
143
VAL
143
A
ALA
144
n
144
ALA
144
A
ARG
145
n
145
ARG
145
A
GLN
146
n
146
GLN
146
A
LEU
147
n
147
LEU
147
A
VAL
148
n
148
VAL
148
A
LYS
149
n
149
LYS
149
A
LEU
150
n
150
LEU
150
A
GLY
151
n
151
GLY
151
A
GLY
152
n
152
GLY
152
A
ARG
153
n
153
ARG
153
A
PRO
154
n
154
PRO
154
A
GLU
155
n
155
GLU
155
A
TYR
156
n
156
TYR
156
A
ARG
157
n
157
ARG
157
A
GLN
158
n
158
GLN
158
A
GLY
159
n
159
GLY
159
A
VAL
160
n
160
VAL
160
A
VAL
161
n
161
VAL
161
A
THR
162
n
162
THR
162
A
ASP
163
n
163
ASP
163
A
ASN
164
n
164
ASN
164
A
GLY
165
n
165
GLY
165
A
ASN
166
n
166
ASN
166
A
VAL
167
n
167
VAL
167
A
ILE
168
n
168
ILE
168
A
LEU
169
n
169
LEU
169
A
ASP
170
n
170
ASP
170
A
VAL
171
n
171
VAL
171
A
HIS
172
n
172
HIS
172
A
GLY
173
n
173
GLY
173
A
MSE
174
n
174
MSE
174
A
GLU
175
n
175
GLU
175
A
ILE
176
n
176
ILE
176
A
LEU
177
n
177
LEU
177
A
ASP
178
n
178
ASP
178
A
PRO
179
n
179
PRO
179
A
ILE
180
n
180
ILE
180
A
ALA
181
n
181
ALA
181
A
MSE
182
n
182
MSE
182
A
GLU
183
n
183
GLU
183
A
ASN
184
n
184
ASN
184
A
ALA
185
n
185
ALA
185
A
ILE
186
n
186
ILE
186
A
ASN
187
n
187
ASN
187
A
ALA
188
n
188
ALA
188
A
ILE
189
n
189
ILE
189
A
PRO
190
n
190
PRO
190
A
GLY
191
n
191
GLY
191
A
VAL
192
n
192
VAL
192
A
VAL
193
n
193
VAL
193
A
THR
194
n
194
THR
194
A
VAL
195
n
195
VAL
195
A
GLY
196
n
196
GLY
196
A
LEU
197
n
197
LEU
197
A
PHE
198
n
198
PHE
198
A
ALA
199
n
199
ALA
199
A
ASN
200
n
200
ASN
200
A
ARG
201
n
201
ARG
201
A
GLY
202
n
202
GLY
202
A
ALA
203
n
203
ALA
203
A
ASP
204
n
204
ASP
204
A
VAL
205
n
205
VAL
205
A
ALA
206
n
206
ALA
206
A
LEU
207
n
207
LEU
207
A
ILE
208
n
208
ILE
208
A
GLY
209
n
209
GLY
209
A
THR
210
n
210
THR
210
A
PRO
211
n
211
PRO
211
A
ASP
212
n
212
ASP
212
A
GLY
213
n
213
GLY
213
A
VAL
214
n
214
VAL
214
A
LYS
215
n
215
LYS
215
A
THR
216
n
216
THR
216
A
ILE
217
n
217
ILE
217
A
VAL
218
n
218
VAL
218
A
LYS
219
n
219
LYS
219
A
MSE
1
n
1
MSE
1
B
THR
2
n
2
THR
2
B
GLN
3
n
3
GLN
3
B
ASP
4
n
4
ASP
4
B
GLU
5
n
5
GLU
5
B
LEU
6
n
6
LEU
6
B
LYS
7
n
7
LYS
7
B
LYS
8
n
8
LYS
8
B
ALA
9
n
9
ALA
9
B
VAL
10
n
10
VAL
10
B
GLY
11
n
11
GLY
11
B
TRP
12
n
12
TRP
12
B
ALA
13
n
13
ALA
13
B
ALA
14
n
14
ALA
14
B
LEU
15
n
15
LEU
15
B
GLN
16
n
16
GLN
16
B
TYR
17
n
17
TYR
17
B
VAL
18
n
18
VAL
18
B
GLN
19
n
19
GLN
19
B
PRO
20
n
20
PRO
20
B
GLY
21
n
21
GLY
21
B
THR
22
n
22
THR
22
B
ILE
23
n
23
ILE
23
B
VAL
24
n
24
VAL
24
B
GLY
25
n
25
GLY
25
B
VAL
26
n
26
VAL
26
B
GLY
27
n
27
GLY
27
B
THR
28
n
28
THR
28
B
GLY
29
n
29
GLY
29
B
SER
30
n
30
SER
30
B
THR
31
n
31
THR
31
B
ALA
32
n
32
ALA
32
B
ALA
33
n
33
ALA
33
B
HIS
34
n
34
HIS
34
B
PHE
35
n
35
PHE
35
B
ILE
36
n
36
ILE
36
B
ASP
37
n
37
ASP
37
B
ALA
38
n
38
ALA
38
B
LEU
39
n
39
LEU
39
B
GLY
40
n
40
GLY
40
B
THR
41
n
41
THR
41
B
MSE
42
n
42
MSE
42
B
LYS
43
n
43
LYS
43
B
GLY
44
n
44
GLY
44
B
GLN
45
n
45
GLN
45
B
ILE
46
n
46
ILE
46
B
GLU
47
n
47
GLU
47
B
GLY
48
n
48
GLY
48
B
ALA
49
n
49
ALA
49
B
VAL
50
n
50
VAL
50
B
SER
51
n
51
SER
51
B
SER
52
n
52
SER
52
B
SER
53
n
53
SER
53
B
ASP
54
n
54
ASP
54
B
ALA
55
n
55
ALA
55
B
SER
56
n
56
SER
56
B
THR
57
n
57
THR
57
B
GLU
58
n
58
GLU
58
B
LYS
59
n
59
LYS
59
B
LEU
60
n
60
LEU
60
B
LYS
61
n
61
LYS
61
B
SER
62
n
62
SER
62
B
LEU
63
n
63
LEU
63
B
GLY
64
n
64
GLY
64
B
ILE
65
n
65
ILE
65
B
HIS
66
n
66
HIS
66
B
VAL
67
n
67
VAL
67
B
PHE
68
n
68
PHE
68
B
ASP
69
n
69
ASP
69
B
LEU
70
n
70
LEU
70
B
ASN
71
n
71
ASN
71
B
GLU
72
n
72
GLU
72
B
VAL
73
n
73
VAL
73
B
ASP
74
n
74
ASP
74
B
SER
75
n
75
SER
75
B
LEU
76
n
76
LEU
76
B
GLY
77
n
77
GLY
77
B
ILE
78
n
78
ILE
78
B
TYR
79
n
79
TYR
79
B
VAL
80
n
80
VAL
80
B
ASP
81
n
81
ASP
81
B
GLY
82
n
82
GLY
82
B
ALA
83
n
83
ALA
83
B
ASP
84
n
84
ASP
84
B
GLU
85
n
85
GLU
85
B
ILE
86
n
86
ILE
86
B
ASN
87
n
87
ASN
87
B
GLY
88
n
88
GLY
88
B
HIS
89
n
89
HIS
89
B
MSE
90
n
90
MSE
90
B
GLN
91
n
91
GLN
91
B
MSE
92
n
92
MSE
92
B
ILE
93
n
93
ILE
93
B
LYS
94
n
94
LYS
94
B
GLY
95
n
95
GLY
95
B
GLY
96
n
96
GLY
96
B
GLY
97
n
97
GLY
97
B
ALA
98
n
98
ALA
98
B
ALA
99
n
99
ALA
99
B
LEU
100
n
100
LEU
100
B
THR
101
n
101
THR
101
B
ARG
102
n
102
ARG
102
B
GLU
103
n
103
GLU
103
B
LYS
104
n
104
LYS
104
B
ILE
105
n
105
ILE
105
B
ILE
106
n
106
ILE
106
B
ALA
107
n
107
ALA
107
B
SER
108
n
108
SER
108
B
VAL
109
n
109
VAL
109
B
ALA
110
n
110
ALA
110
B
GLU
111
n
111
GLU
111
B
LYS
112
n
112
LYS
112
B
PHE
113
n
113
PHE
113
B
ILE
114
n
114
ILE
114
B
CYS
115
n
115
CYS
115
B
ILE
116
n
116
ILE
116
B
ALA
117
n
117
ALA
117
B
ASP
118
n
118
ASP
118
B
ALA
119
n
119
ALA
119
B
SER
120
n
120
SER
120
B
LYS
121
n
121
LYS
121
B
GLN
122
n
122
GLN
122
B
VAL
123
n
123
VAL
123
B
ASP
124
n
124
ASP
124
B
ILE
125
n
125
ILE
125
B
LEU
126
n
126
LEU
126
B
GLY
127
n
127
GLY
127
B
LYS
128
n
128
LYS
128
B
PHE
129
n
129
PHE
129
B
PRO
130
n
130
PRO
130
B
LEU
131
n
131
LEU
131
B
PRO
132
n
132
PRO
132
B
VAL
133
n
133
VAL
133
B
GLU
134
n
134
GLU
134
B
VAL
135
n
135
VAL
135
B
ILE
136
n
136
ILE
136
B
PRO
137
n
137
PRO
137
B
MSE
138
n
138
MSE
138
B
ALA
139
n
139
ALA
139
B
ARG
140
n
140
ARG
140
B
SER
141
n
141
SER
141
B
ALA
142
n
142
ALA
142
B
VAL
143
n
143
VAL
143
B
ALA
144
n
144
ALA
144
B
ARG
145
n
145
ARG
145
B
GLN
146
n
146
GLN
146
B
LEU
147
n
147
LEU
147
B
VAL
148
n
148
VAL
148
B
LYS
149
n
149
LYS
149
B
LEU
150
n
150
LEU
150
B
GLY
151
n
151
GLY
151
B
GLY
152
n
152
GLY
152
B
ARG
153
n
153
ARG
153
B
PRO
154
n
154
PRO
154
B
GLU
155
n
155
GLU
155
B
TYR
156
n
156
TYR
156
B
ARG
157
n
157
ARG
157
B
GLN
158
n
158
GLN
158
B
GLY
159
n
159
GLY
159
B
VAL
160
n
160
VAL
160
B
VAL
161
n
161
VAL
161
B
THR
162
n
162
THR
162
B
ASP
163
n
163
ASP
163
B
ASN
164
n
164
ASN
164
B
GLY
165
n
165
GLY
165
B
ASN
166
n
166
ASN
166
B
VAL
167
n
167
VAL
167
B
ILE
168
n
168
ILE
168
B
LEU
169
n
169
LEU
169
B
ASP
170
n
170
ASP
170
B
VAL
171
n
171
VAL
171
B
HIS
172
n
172
HIS
172
B
GLY
173
n
173
GLY
173
B
MSE
174
n
174
MSE
174
B
GLU
175
n
175
GLU
175
B
ILE
176
n
176
ILE
176
B
LEU
177
n
177
LEU
177
B
ASP
178
n
178
ASP
178
B
PRO
179
n
179
PRO
179
B
ILE
180
n
180
ILE
180
B
ALA
181
n
181
ALA
181
B
MSE
182
n
182
MSE
182
B
GLU
183
n
183
GLU
183
B
ASN
184
n
184
ASN
184
B
ALA
185
n
185
ALA
185
B
ILE
186
n
186
ILE
186
B
ASN
187
n
187
ASN
187
B
ALA
188
n
188
ALA
188
B
ILE
189
n
189
ILE
189
B
PRO
190
n
190
PRO
190
B
GLY
191
n
191
GLY
191
B
VAL
192
n
192
VAL
192
B
VAL
193
n
193
VAL
193
B
THR
194
n
194
THR
194
B
VAL
195
n
195
VAL
195
B
GLY
196
n
196
GLY
196
B
LEU
197
n
197
LEU
197
B
PHE
198
n
198
PHE
198
B
ALA
199
n
199
ALA
199
B
ASN
200
n
200
ASN
200
B
ARG
201
n
201
ARG
201
B
GLY
202
n
202
GLY
202
B
ALA
203
n
203
ALA
203
B
ASP
204
n
204
ASP
204
B
VAL
205
n
205
VAL
205
B
ALA
206
n
206
ALA
206
B
LEU
207
n
207
LEU
207
B
ILE
208
n
208
ILE
208
B
GLY
209
n
209
GLY
209
B
THR
210
n
210
THR
210
B
PRO
211
n
211
PRO
211
B
ASP
212
n
212
ASP
212
B
GLY
213
n
213
GLY
213
B
VAL
214
n
214
VAL
214
B
LYS
215
n
215
LYS
215
B
THR
216
n
216
THR
216
B
ILE
217
n
217
ILE
217
B
VAL
218
n
218
VAL
218
B
LYS
219
n
219
LYS
219
B
author_and_software_defined_assembly
PISA
2
dimeric
2250
-12
17950
A
MSE
1
SELENOMETHIONINE
A
MSE
1
MET
A
MSE
42
SELENOMETHIONINE
A
MSE
42
MET
A
MSE
90
SELENOMETHIONINE
A
MSE
90
MET
A
MSE
92
SELENOMETHIONINE
A
MSE
92
MET
A
MSE
138
SELENOMETHIONINE
A
MSE
138
MET
A
MSE
174
SELENOMETHIONINE
A
MSE
174
MET
A
MSE
182
SELENOMETHIONINE
A
MSE
182
MET
B
MSE
1
SELENOMETHIONINE
B
MSE
1
MET
B
MSE
42
SELENOMETHIONINE
B
MSE
42
MET
B
MSE
90
SELENOMETHIONINE
B
MSE
90
MET
B
MSE
92
SELENOMETHIONINE
B
MSE
92
MET
B
MSE
138
SELENOMETHIONINE
B
MSE
138
MET
B
MSE
174
SELENOMETHIONINE
B
MSE
174
MET
B
MSE
182
SELENOMETHIONINE
B
MSE
182
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
68
A
O
PHE
68
A
N
ALA
49
A
N
ALA
49
A
O
VAL
50
A
O
VAL
50
A
N
VAL
24
A
N
VAL
24
A
N
GLY
25
A
N
GLY
25
A
O
VAL
80
A
O
VAL
80
A
N
LEU
76
A
N
LEU
76
A
O
GLU
111
A
O
GLU
111
A
N
CYS
115
A
N
CYS
115
A
O
VAL
205
A
O
VAL
205
A
N
THR
210
A
N
THR
210
A
O
GLY
213
A
O
GLY
213
A
N
GLU
85
A
N
GLU
85
A
O
ILE
93
A
O
ILE
93
A
N
MSE
92
A
N
MSE
92
A
O
PHE
198
A
O
PHE
198
A
N
ARG
153
A
N
ARG
153
A
O
HIS
172
A
O
HIS
172
A
O
VAL
171
A
O
VAL
171
A
N
LEU
131
A
N
LEU
131
A
N
GLU
134
A
N
GLU
134
A
O
VAL
193
A
O
VAL
193
B
O
PHE
68
B
O
PHE
68
B
N
ALA
49
B
N
ALA
49
B
O
GLY
48
B
O
GLY
48
B
N
VAL
24
B
N
VAL
24
B
N
GLY
25
B
N
GLY
25
B
O
VAL
80
B
O
VAL
80
B
N
LEU
76
B
N
LEU
76
B
O
GLU
111
B
O
GLU
111
B
N
CYS
115
B
N
CYS
115
B
O
LEU
207
B
O
LEU
207
B
N
THR
210
B
N
THR
210
B
O
GLY
213
B
O
GLY
213
B
N
GLU
85
B
N
GLU
85
B
O
ILE
93
B
O
ILE
93
B
N
MSE
92
B
N
MSE
92
B
O
PHE
198
B
O
PHE
198
B
N
ARG
153
B
N
ARG
153
B
O
HIS
172
B
O
HIS
172
B
O
VAL
171
B
O
VAL
171
B
N
LEU
131
B
N
LEU
131
B
N
GLU
134
B
N
GLU
134
B
O
VAL
193
B
O
VAL
193
1
A
GLN
3
-36.07
-36.75
1
A
ALA
99
38.15
41.65
1
B
GLN
3
-36.59
-37.78
1
B
MSE
138
-49.25
-16.75
1
B
ILE
176
-68.46
78.27
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER_REP.TOP
29.9
3.10
0.00
0.00
-3.57
0.00
0.47
0.27
0.005
0.227
2.50
45
2868
29225
28384
10.1
86.8
RANDOM
1
THROUGHOUT
0
MAD
Engh & Huber
FLAT MODEL
35.7353
0.368334
0.41
0.33
5.00
0.39
0.36
2.50
45
129
3335
0
0
3206
0.011
1.6
25.0
0.85
1.11
1.50
1.87
2.00
2.73
2.00
2.59
2.50
0.368
0.020
0.317
2.66
330
3440
6
8.8
69.0
42.8
2.50
45.0
1LKZ
29225
0
0
0.055
1
16.9
87.9
2.50
2.58
0.322
73.5
data processing
Adxv
data scaling
SCALEPACK
phasing
SOLVE
refinement
CNS
1.0
Ribose 5-phosphate isomerase A (E.C.5.3.1.6)
Crystal structure of D-ribose-5-phosphate isomerase (RpiA) from Escherichia coli.
1
N
N
1
N
N
2
N
N
2
N
N
A
THR
2
A
THR
2
HELX_P
A
ALA
14
A
ALA
14
1
1
13
A
LEU
15
A
LEU
15
HELX_P
A
VAL
18
A
VAL
18
5
2
4
A
GLY
29
A
GLY
29
HELX_P
A
THR
41
A
THR
41
1
3
13
A
SER
53
A
SER
53
HELX_P
A
LEU
63
A
LEU
63
1
4
11
A
ASP
69
A
ASP
69
HELX_P
A
VAL
73
A
VAL
73
5
5
5
A
ALA
99
A
ALA
99
HELX_P
A
VAL
109
A
VAL
109
1
6
11
A
SER
120
A
SER
120
HELX_P
A
GLN
122
A
GLN
122
5
7
3
A
ALA
139
A
ALA
139
HELX_P
A
GLY
151
A
GLY
151
1
8
13
A
ASP
178
A
ASP
178
HELX_P
A
ALA
188
A
ALA
188
1
9
11
B
THR
2
B
THR
2
HELX_P
B
ALA
14
B
ALA
14
1
10
13
B
LEU
15
B
LEU
15
HELX_P
B
VAL
18
B
VAL
18
5
11
4
B
GLY
29
B
GLY
29
HELX_P
B
THR
41
B
THR
41
1
12
13
B
SER
53
B
SER
53
HELX_P
B
SER
62
B
SER
62
1
13
10
B
ASP
69
B
ASP
69
HELX_P
B
VAL
73
B
VAL
73
5
14
5
B
ALA
99
B
ALA
99
HELX_P
B
VAL
109
B
VAL
109
1
15
11
B
SER
120
B
SER
120
HELX_P
B
GLN
122
B
GLN
122
5
16
3
B
ALA
139
B
ALA
139
HELX_P
B
LEU
150
B
LEU
150
1
17
12
B
ASP
178
B
ASP
178
HELX_P
B
ALA
188
B
ALA
188
1
18
11
covale
1.330
A
MSE
1
A
C
MSE
1
1_555
A
THR
2
A
N
THR
2
1_555
covale
1.335
A
THR
41
A
C
THR
41
1_555
A
MSE
42
A
N
MSE
42
1_555
covale
1.329
A
MSE
42
A
C
MSE
42
1_555
A
LYS
43
A
N
LYS
43
1_555
covale
1.330
A
HIS
89
A
C
HIS
89
1_555
A
MSE
90
A
N
MSE
90
1_555
covale
1.325
A
MSE
90
A
C
MSE
90
1_555
A
GLN
91
A
N
GLN
91
1_555
covale
1.332
A
GLN
91
A
C
GLN
91
1_555
A
MSE
92
A
N
MSE
92
1_555
covale
1.327
A
MSE
92
A
C
MSE
92
1_555
A
ILE
93
A
N
ILE
93
1_555
covale
1.335
A
PRO
137
A
C
PRO
137
1_555
A
MSE
138
A
N
MSE
138
1_555
covale
1.323
A
MSE
138
A
C
MSE
138
1_555
A
ALA
139
A
N
ALA
139
1_555
covale
1.328
A
GLY
173
A
C
GLY
173
1_555
A
MSE
174
A
N
MSE
174
1_555
covale
1.328
A
MSE
174
A
C
MSE
174
1_555
A
GLU
175
A
N
GLU
175
1_555
covale
1.331
A
ALA
181
A
C
ALA
181
1_555
A
MSE
182
A
N
MSE
182
1_555
covale
1.329
A
MSE
182
A
C
MSE
182
1_555
A
GLU
183
A
N
GLU
183
1_555
covale
1.329
B
MSE
1
B
C
MSE
1
1_555
B
THR
2
B
N
THR
2
1_555
covale
1.328
B
THR
41
B
C
THR
41
1_555
B
MSE
42
B
N
MSE
42
1_555
covale
1.330
B
MSE
42
B
C
MSE
42
1_555
B
LYS
43
B
N
LYS
43
1_555
covale
1.329
B
HIS
89
B
C
HIS
89
1_555
B
MSE
90
B
N
MSE
90
1_555
covale
1.321
B
MSE
90
B
C
MSE
90
1_555
B
GLN
91
B
N
GLN
91
1_555
covale
1.325
B
GLN
91
B
C
GLN
91
1_555
B
MSE
92
B
N
MSE
92
1_555
covale
1.328
B
MSE
92
B
C
MSE
92
1_555
B
ILE
93
B
N
ILE
93
1_555
covale
1.331
B
PRO
137
B
C
PRO
137
1_555
B
MSE
138
B
N
MSE
138
1_555
covale
1.328
B
MSE
138
B
C
MSE
138
1_555
B
ALA
139
B
N
ALA
139
1_555
covale
1.324
B
GLY
173
B
C
GLY
173
1_555
B
MSE
174
B
N
MSE
174
1_555
covale
1.328
B
MSE
174
B
C
MSE
174
1_555
B
GLU
175
B
N
GLU
175
1_555
covale
1.328
B
ALA
181
B
C
ALA
181
1_555
B
MSE
182
B
N
MSE
182
1_555
covale
1.324
B
MSE
182
B
C
MSE
182
1_555
B
GLU
183
B
N
GLU
183
1_555
ISOMERASE
ribose phosphate isomerase, RpiA, Montreal-Kingston Bacterial Structural Genomics Initiative, BSGI, Structural Genomics, ISOMERASE
RPIA_ECOLI
UNP
1
1
P0A7Z0
MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYV
DGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGV
VTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK
1
219
1LKZ
1
219
P0A7Z0
A
1
1
219
1
219
1LKZ
1
219
P0A7Z0
B
1
1
219
1
MET
MODIFIED RESIDUE
MSE
1
1LKZ
A
P0A7Z0
UNP
1
1
1
MET
MODIFIED RESIDUE
MSE
42
1LKZ
A
P0A7Z0
UNP
42
42
1
MET
MODIFIED RESIDUE
MSE
90
1LKZ
A
P0A7Z0
UNP
90
90
1
MET
MODIFIED RESIDUE
MSE
92
1LKZ
A
P0A7Z0
UNP
92
92
1
MET
MODIFIED RESIDUE
MSE
138
1LKZ
A
P0A7Z0
UNP
138
138
1
MET
MODIFIED RESIDUE
MSE
174
1LKZ
A
P0A7Z0
UNP
174
174
1
MET
MODIFIED RESIDUE
MSE
182
1LKZ
A
P0A7Z0
UNP
182
182
2
MET
MODIFIED RESIDUE
MSE
1
1LKZ
B
P0A7Z0
UNP
1
1
2
MET
MODIFIED RESIDUE
MSE
42
1LKZ
B
P0A7Z0
UNP
42
42
2
MET
MODIFIED RESIDUE
MSE
90
1LKZ
B
P0A7Z0
UNP
90
90
2
MET
MODIFIED RESIDUE
MSE
92
1LKZ
B
P0A7Z0
UNP
92
92
2
MET
MODIFIED RESIDUE
MSE
138
1LKZ
B
P0A7Z0
UNP
138
138
2
MET
MODIFIED RESIDUE
MSE
174
1LKZ
B
P0A7Z0
UNP
174
174
2
MET
MODIFIED RESIDUE
MSE
182
1LKZ
B
P0A7Z0
UNP
182
182
7
3
4
7
3
4
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
67
A
VAL
67
A
PHE
68
A
PHE
68
A
GLY
48
A
GLY
48
A
SER
51
A
SER
51
A
ILE
23
A
ILE
23
A
VAL
26
A
VAL
26
A
LEU
76
A
LEU
76
A
ASP
81
A
ASP
81
A
ALA
110
A
ALA
110
A
ASP
118
A
ASP
118
A
VAL
205
A
VAL
205
A
THR
210
A
THR
210
A
GLY
213
A
GLY
213
A
VAL
218
A
VAL
218
A
GLU
85
A
GLU
85
A
ILE
86
A
ILE
86
A
MSE
92
A
MSE
92
A
ILE
93
A
ILE
93
A
LEU
197
A
LEU
197
A
PHE
198
A
PHE
198
A
ARG
153
A
ARG
153
A
TYR
156
A
TYR
156
A
VAL
167
A
VAL
167
A
HIS
172
A
HIS
172
A
LEU
131
A
LEU
131
A
VAL
135
A
VAL
135
A
VAL
192
A
VAL
192
A
VAL
195
A
VAL
195
B
VAL
67
B
VAL
67
B
PHE
68
B
PHE
68
B
GLY
48
B
GLY
48
B
SER
51
B
SER
51
B
ILE
23
B
ILE
23
B
VAL
26
B
VAL
26
B
LEU
76
B
LEU
76
B
ASP
81
B
ASP
81
B
ALA
110
B
ALA
110
B
ASP
118
B
ASP
118
B
VAL
205
B
VAL
205
B
THR
210
B
THR
210
B
GLY
213
B
GLY
213
B
VAL
218
B
VAL
218
B
GLU
85
B
GLU
85
B
ILE
86
B
ILE
86
B
MSE
92
B
MSE
92
B
ILE
93
B
ILE
93
B
LEU
197
B
LEU
197
B
PHE
198
B
PHE
198
B
ARG
153
B
ARG
153
B
TYR
156
B
TYR
156
B
VAL
167
B
VAL
167
B
HIS
172
B
HIS
172
B
LEU
131
B
LEU
131
B
VAL
135
B
VAL
135
B
VAL
192
B
VAL
192
B
VAL
195
B
VAL
195
20
C 2 2 21