0.005910
0.000000
0.000134
0.000000
0.011712
0.000000
0.000000
0.000000
0.005551
0.000000
0.000000
0.000000
RESIDUE 141 IS A CIS PROLINE.
SEE REMARK 8.
Buehner, M.
Hecht, H.J.
Hensel, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
91.30
90.00
169.200
85.380
180.180
C6 H14 O12 P2
340.116
n
1,6-di-O-phosphono-alpha-D-fructofuranose
ALPHA FRUCTOSE 1,6-DIPHOSPHATE; 1,6-di-O-phosphono-alpha-D-fructose; 1,6-di-O-phosphono-D-fructose; 1,6-di-O-phosphono-fructose
D-saccharide, alpha linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
S
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
S
C
N
12
N
O
N
13
R
C
N
14
N
O
N
15
N
C
N
16
N
O
N
17
N
P
N
18
N
O
N
19
N
O
N
20
N
O
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
N
N
36
S
C
N
37
N
C
N
38
N
O
N
39
N
C
N
40
N
O
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
N
N
58
N
N
N
59
N
O
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
N
N
93
S
C
N
94
N
C
N
95
N
O
N
96
N
C
N
97
N
C
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
N
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
S
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
O
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
Y
162
N
C
Y
163
N
N
Y
164
N
C
Y
165
N
C
Y
166
N
N
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
S
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
C
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
N
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
S
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
S
N
322
N
O
N
323
N
O
N
324
N
O
N
325
N
O
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
R
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
N
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
Y
161
N
sing
Y
162
N
doub
Y
163
N
doub
N
164
N
sing
Y
165
N
sing
N
166
N
sing
Y
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
Y
267
N
doub
Y
268
N
sing
Y
269
N
sing
N
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
Y
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
DK
Acta Crystallogr.,Sect.A
ACACEQ
0621
0108-7673
40
32
32
-1
STRUCTURE DETERMINATION OF THE ALLOSTERIC L-LACTATE DEHYDROGENASE FROM LACTOBACILLUS-CASEI AT 3A RESOLUTION.
1984
GE
Z.Kristallogr.
ZKKKAJ
0005
0044-2968
178
44
Die Strukturbestimmung Der Allosterischen L-Laktat-Dehydrogenase Aus Lactobacillus Casei Mittels Molekularem Ersatz. Phasenexpansion Und Phasenverfeinerung Mittels Nichtkristallographischer Symmetrie (German)
1987
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
134
503
The Complete Primary Structure of the Allosteric L-Lactate Dehydrogenase from Lactobacillus Casei
1983
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
162
189
Crystallization and Preliminary Crystallographic Analysis at Low Resolution of the Allosteric L-Lactate Dehydrogenase from Lactobacillus Casei
1982
10.2210/pdb1llc/pdb
pdb_00001llc
0.549566
0.000000
0.835454
0.835454
0.000000
-0.549476
0.000000
1.000000
0.000000
0.000000
0.000000
0.000000
1
x-ray
1
1.0
35479.359
L-LACTATE DEHYDROGENASE
1.1.1.27
1
man
polymer
340.116
1,6-di-O-phosphono-alpha-D-fructofuranose
1
man
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
no
no
ASITDKDHQKVILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVV
ITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQS
IAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIAT
ALARISKAILNDENAVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDAFAKND
IETRQ
ASITDKDHQKVILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVV
ITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQS
IAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIAT
ALARISKAILNDENAVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDAFAKND
IETRQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lactobacillus
sample
1582
Lactobacillus casei
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_nonpoly
struct_ref_seq_dif
struct_site
struct_site_gen
atom_site
atom_sites
cell
chem_comp
database_2
database_PDB_matrix
pdbx_struct_assembly
pdbx_struct_assembly_gen
pdbx_struct_assembly_prop
pdbx_struct_oper_list
pdbx_validate_main_chain_plane
pdbx_validate_peptide_omega
pdbx_validate_planes
pdbx_validate_rmsd_angle
pdbx_validate_rmsd_bond
pdbx_validate_torsion
struct_ncs_oper
pdbx_struct_assembly_gen
chem_comp_atom
chem_comp_bond
repository
Initial release
Carbohydrate remediation
repository
Remediation
Coordinates and associated ncs operations (if present) transformed into standard crystal frame
repository
Remediation
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Other
Structure summary
Atomic model
Data collection
Database references
Derived calculations
Other
Refinement description
Structure summary
Derived calculations
Data collection
1
0
1989-07-12
1
1
2008-03-03
1
2
2011-07-13
1
3
2020-07-29
2
0
2023-07-26
2
1
2023-08-02
2
2
2024-05-22
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_database_status.process_site
_pdbx_entity_nonpoly.name
_struct_ref_seq_dif.details
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_sites.fract_transf_matrix[1][1]
_atom_sites.fract_transf_matrix[1][2]
_atom_sites.fract_transf_matrix[1][3]
_atom_sites.fract_transf_matrix[2][2]
_atom_sites.fract_transf_matrix[2][3]
_atom_sites.fract_transf_matrix[3][1]
_atom_sites.fract_transf_matrix[3][2]
_atom_sites.fract_transf_matrix[3][3]
_cell.Z_PDB
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_database_PDB_matrix.origx[1][1]
_database_PDB_matrix.origx[1][3]
_database_PDB_matrix.origx[2][1]
_database_PDB_matrix.origx[2][2]
_database_PDB_matrix.origx[2][3]
_database_PDB_matrix.origx[3][2]
_database_PDB_matrix.origx[3][3]
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_validate_main_chain_plane.improper_torsion_angle
_pdbx_validate_planes.rmsd
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
_pdbx_struct_assembly_gen.assembly_id
a-D-Fruf1PO36PO3
SHEET
SHEET S2 CONTAINS A BIFURCATED STRAND. THIS IS REPRESENTED
ON THE *SHEET* RECORDS BELOW BY PRESENTING TWO SHEETS (S2A
AND S2B) THAT DIFFER ONLY IN ONE STRAND.
Y
BNL
1988-11-21
REL
REL
AFP
1,6-di-O-phosphono-alpha-D-fructofuranose
SO4
SULFATE ION
THE METAL ION BINDING SITE HAS NOT YET BEEN IDENTIFIED AND,
THEREFORE, NO COORDINATES FOR CO2+ ARE INCLUDED IN THIS
ENTRY.
FBP
1
2
AFP
AFP
1
A
SO4
2
3
SO4
SO4
2
A
ALA
13
n
1
ALA
13
A
SER
14
n
2
SER
14
A
ILE
15
n
3
ILE
15
A
THR
16
n
4
THR
16
A
ASP
17
n
5
ASP
17
A
LYS
18
n
6
LYS
18
A
ASP
19
n
7
ASP
19
A
HIS
20
n
8
HIS
20
A
GLN
22
n
9
GLN
22
A
LYS
23
n
10
LYS
23
A
VAL
24
n
11
VAL
24
A
ILE
25
n
12
ILE
25
A
LEU
26
n
13
LEU
26
A
VAL
27
n
14
VAL
27
A
GLY
28
n
15
GLY
28
A
ASP
29
n
16
ASP
29
A
GLY
30
n
17
GLY
30
A
ALA
31
n
18
ALA
31
A
VAL
32
n
19
VAL
32
A
GLY
33
n
20
GLY
33
A
SER
34
n
21
SER
34
A
SER
35
n
22
SER
35
A
TYR
36
n
23
TYR
36
A
ALA
37
n
24
ALA
37
A
PHE
38
n
25
PHE
38
A
ALA
39
n
26
ALA
39
A
MET
40
n
27
MET
40
A
VAL
41
n
28
VAL
41
A
LEU
42
n
29
LEU
42
A
GLN
43
n
30
GLN
43
A
GLY
44
n
31
GLY
44
A
ILE
45
n
32
ILE
45
A
ALA
46
n
33
ALA
46
A
GLN
47
n
34
GLN
47
A
GLU
48
n
35
GLU
48
A
ILE
49
n
36
ILE
49
A
GLY
50
n
37
GLY
50
A
ILE
51
n
38
ILE
51
A
VAL
52
n
39
VAL
52
A
ASP
53
n
40
ASP
53
A
ILE
54
n
41
ILE
54
A
PHE
55
n
42
PHE
55
A
LYS
56
n
43
LYS
56
A
ASP
57
n
44
ASP
57
A
LYS
58
n
45
LYS
58
A
THR
59
n
46
THR
59
A
LYS
60
n
47
LYS
60
A
GLY
61
n
48
GLY
61
A
ASP
62
n
49
ASP
62
A
ALA
63
n
50
ALA
63
A
ILE
64
n
51
ILE
64
A
ASP
65
n
52
ASP
65
A
LEU
66
n
53
LEU
66
A
SER
67
n
54
SER
67
A
ASN
68
n
55
ASN
68
A
ALA
69
n
56
ALA
69
A
LEU
70
n
57
LEU
70
A
PRO
71
n
58
PRO
71
A
PHE
72
n
59
PHE
72
A
THR
73
n
60
THR
73
A
SER
74
n
61
SER
74
A
PRO
75
n
62
PRO
75
A
LYS
76
n
63
LYS
76
A
LYS
77
n
64
LYS
77
A
ILE
78
n
65
ILE
78
A
TYR
79
n
66
TYR
79
A
SER
80
n
67
SER
80
A
ALA
81
n
68
ALA
81
A
GLU
84
n
69
GLU
84
A
TYR
85
n
70
TYR
85
A
SER
86
n
71
SER
86
A
ASP
87
n
72
ASP
87
A
ALA
88
n
73
ALA
88
A
LYS
89
n
74
LYS
89
A
ASP
90
n
75
ASP
90
A
ALA
91
n
76
ALA
91
A
ASP
92
n
77
ASP
92
A
LEU
93
n
78
LEU
93
A
VAL
94
n
79
VAL
94
A
VAL
95
n
80
VAL
95
A
ILE
96
n
81
ILE
96
A
THR
97
n
82
THR
97
A
ALA
98
n
83
ALA
98
A
GLY
99
n
84
GLY
99
A
ALA
100
n
85
ALA
100
A
PRO
101
n
86
PRO
101
A
LYS
102
n
87
LYS
102
A
GLN
103
n
88
GLN
103
A
PRO
105
n
89
PRO
105
A
GLY
106
n
90
GLY
106
A
GLU
107
n
91
GLU
107
A
THR
108
n
92
THR
108
A
ARG
109
n
93
ARG
109
A
LEU
110
n
94
LEU
110
A
ASP
111
n
95
ASP
111
A
LEU
112
n
96
LEU
112
A
VAL
113
n
97
VAL
113
A
ASN
114
n
98
ASN
114
A
LYS
115
n
99
LYS
115
A
ASN
116
n
100
ASN
116
A
LEU
117
n
101
LEU
117
A
LYS
118
n
102
LYS
118
A
ILE
119
n
103
ILE
119
A
LEU
120
n
104
LEU
120
A
LYS
121
n
105
LYS
121
A
SER
122
n
106
SER
122
A
ILE
123
n
107
ILE
123
A
VAL
124
n
108
VAL
124
A
ASP
125
n
109
ASP
125
A
PRO
126
n
110
PRO
126
A
ILE
127
n
111
ILE
127
A
VAL
128
n
112
VAL
128
A
ASP
129
n
113
ASP
129
A
SER
130
n
114
SER
130
A
GLY
131
n
115
GLY
131
A
PHE
132
n
116
A
PHE
132
A
ASN
132
n
117
B
ASN
132
A
LEU
133
n
118
LEU
133
A
ILE
134
n
119
ILE
134
A
PHE
135
n
120
PHE
135
A
LEU
136
n
121
LEU
136
A
VAL
137
n
122
VAL
137
A
ALA
138
n
123
ALA
138
A
ALA
139
n
124
ALA
139
A
ASN
140
n
125
ASN
140
A
PRO
141
n
126
PRO
141
A
VAL
142
n
127
VAL
142
A
ASP
143
n
128
ASP
143
A
ILE
144
n
129
ILE
144
A
LEU
145
n
130
LEU
145
A
THR
146
n
131
THR
146
A
TYR
147
n
132
TYR
147
A
ALA
148
n
133
ALA
148
A
THR
149
n
134
THR
149
A
TRP
150
n
135
TRP
150
A
LYS
151
n
136
LYS
151
A
LEU
152
n
137
LEU
152
A
SER
153
n
138
SER
153
A
GLY
154
n
139
GLY
154
A
PHE
155
n
140
PHE
155
A
PRO
156
n
141
PRO
156
A
LYS
157
n
142
LYS
157
A
ASN
158
n
143
ASN
158
A
ARG
159
n
144
ARG
159
A
VAL
160
n
145
VAL
160
A
VAL
161
n
146
VAL
161
A
GLY
162
n
147
GLY
162
A
SER
163
n
148
SER
163
A
GLY
164
n
149
GLY
164
A
THR
165
n
150
THR
165
A
SER
166
n
151
SER
166
A
LEU
167
n
152
LEU
167
A
ASP
168
n
153
ASP
168
A
THR
169
n
154
THR
169
A
ALA
170
n
155
ALA
170
A
ARG
171
n
156
ARG
171
A
PHE
172
n
157
PHE
172
A
ARG
173
n
158
ARG
173
A
GLN
174
n
159
GLN
174
A
SER
175
n
160
SER
175
A
ILE
176
n
161
ILE
176
A
ALA
177
n
162
ALA
177
A
GLU
178
n
163
GLU
178
A
MET
179
n
164
MET
179
A
VAL
180
n
165
VAL
180
A
ASN
181
n
166
ASN
181
A
VAL
182
n
167
VAL
182
A
ASP
183
n
168
ASP
183
A
ALA
184
n
169
ALA
184
A
ARG
185
n
170
ARG
185
A
SER
186
n
171
SER
186
A
VAL
187
n
172
VAL
187
A
HIS
188
n
173
HIS
188
A
ALA
189
n
174
ALA
189
A
TYR
190
n
175
TYR
190
A
ILE
191
n
176
ILE
191
A
MET
192
n
177
MET
192
A
GLY
193
n
178
GLY
193
A
GLU
194
n
179
GLU
194
A
HIS
195
n
180
HIS
195
A
GLY
196
n
181
GLY
196
A
ASP
197
n
182
ASP
197
A
THR
198
n
183
THR
198
A
GLU
199
n
184
GLU
199
A
PHE
200
n
185
PHE
200
A
PRO
201
n
186
PRO
201
A
VAL
202
n
187
VAL
202
A
TRP
203
n
188
TRP
203
A
SER
204
n
189
SER
204
A
HIS
205
n
190
HIS
205
A
ALA
206
n
191
ALA
206
A
ASN
207
n
192
ASN
207
A
ILE
208
n
193
ILE
208
A
GLY
209
n
194
A
GLY
209
A
GLY
209
n
195
B
GLY
209
A
VAL
209
n
196
C
VAL
209
A
THR
209
n
197
D
THR
209
A
ILE
210
n
198
A
ILE
210
A
ALA
210
n
199
B
ALA
210
A
GLU
211
n
200
GLU
211
A
TRP
212
n
201
TRP
212
A
VAL
213
n
202
VAL
213
A
LYS
214
n
203
LYS
214
A
ALA
215
n
204
ALA
215
A
HIS
216
n
205
HIS
216
A
PRO
217
n
206
PRO
217
A
GLU
218
n
207
GLU
218
A
ILE
219
n
208
ILE
219
A
LYS
220
n
209
LYS
220
A
GLU
221
n
210
GLU
221
A
ASP
222
n
211
ASP
222
A
LYS
223
n
212
LYS
223
A
LEU
225
n
213
LEU
225
A
VAL
226
n
214
VAL
226
A
LYS
227
n
215
LYS
227
A
MET
228
n
216
MET
228
A
PHE
229
n
217
PHE
229
A
GLU
230
n
218
GLU
230
A
ASP
231
n
219
ASP
231
A
VAL
232
n
220
VAL
232
A
ARG
233
n
221
ARG
233
A
ASP
234
n
222
ASP
234
A
ALA
235
n
223
ALA
235
A
ALA
236
n
224
ALA
236
A
TYR
237
n
225
TYR
237
A
GLU
238
n
226
GLU
238
A
ILE
239
n
227
ILE
239
A
ILE
240
n
228
ILE
240
A
LYS
241
n
229
LYS
241
A
LEU
242
n
230
LEU
242
A
LYS
243
n
231
LYS
243
A
GLY
244
n
232
GLY
244
A
ALA
245
n
233
ALA
245
A
THR
246
n
234
THR
246
A
PHE
247
n
235
PHE
247
A
TYR
248
n
236
TYR
248
A
GLY
249
n
237
GLY
249
A
ILE
250
n
238
ILE
250
A
ALA
251
n
239
ALA
251
A
THR
252
n
240
THR
252
A
ALA
253
n
241
ALA
253
A
LEU
254
n
242
LEU
254
A
ALA
255
n
243
ALA
255
A
ARG
256
n
244
ARG
256
A
ILE
257
n
245
ILE
257
A
SER
258
n
246
SER
258
A
LYS
259
n
247
LYS
259
A
ALA
260
n
248
ALA
260
A
ILE
261
n
249
ILE
261
A
LEU
262
n
250
LEU
262
A
ASN
263
n
251
ASN
263
A
ASP
264
n
252
ASP
264
A
GLU
265
n
253
GLU
265
A
ASN
266
n
254
ASN
266
A
ALA
267
n
255
ALA
267
A
VAL
268
n
256
VAL
268
A
LEU
269
n
257
LEU
269
A
PRO
270
n
258
PRO
270
A
LEU
271
n
259
LEU
271
A
SER
272
n
260
SER
272
A
VAL
273
n
261
VAL
273
A
TYR
274
n
262
TYR
274
A
MET
275
n
263
MET
275
A
ASP
276
n
264
ASP
276
A
GLY
277
n
265
GLY
277
A
GLN
278
n
266
GLN
278
A
TYR
279
n
267
TYR
279
A
GLY
280
n
268
GLY
280
A
ILE
281
n
269
ILE
281
A
ASN
282
n
270
ASN
282
A
ASP
283
n
271
ASP
283
A
LEU
285
n
272
LEU
285
A
TYR
286
n
273
TYR
286
A
ILE
287
n
274
ILE
287
A
GLY
288
n
275
GLY
288
A
THR
289
n
276
THR
289
A
PRO
290
n
277
PRO
290
A
ALA
291
n
278
ALA
291
A
VAL
292
n
279
VAL
292
A
ILE
293
n
280
ILE
293
A
ASN
294
n
281
ASN
294
A
ARG
295
n
282
ARG
295
A
ASN
296
n
283
ASN
296
A
GLY
297
n
284
GLY
297
A
ILE
298
n
285
ILE
298
A
GLN
299
n
286
GLN
299
A
ASN
301
n
287
ASN
301
A
ILE
302
n
288
ILE
302
A
LEU
303
n
289
LEU
303
A
GLU
304
n
290
GLU
304
A
ILE
305
n
291
ILE
305
A
PRO
306
n
292
PRO
306
A
LEU
307
n
293
LEU
307
A
THR
308
n
294
THR
308
A
ASP
309
n
295
ASP
309
A
HIS
310
n
296
HIS
310
A
GLU
311
n
297
GLU
311
A
GLU
312
n
298
GLU
312
A
GLU
313
n
299
GLU
313
A
SER
314
n
300
SER
314
A
MET
315
n
301
MET
315
A
GLN
316
n
302
GLN
316
A
LYS
317
n
303
LYS
317
A
SER
318
n
304
SER
318
A
ALA
319
n
305
ALA
319
A
SER
320
n
306
SER
320
A
GLN
321
n
307
GLN
321
A
LEU
322
n
308
LEU
322
A
LYS
323
n
309
LYS
323
A
LYS
324
n
310
LYS
324
A
VAL
325
n
311
VAL
325
A
LEU
326
n
312
LEU
326
A
THR
327
n
313
THR
327
A
ASP
328
n
314
ASP
328
A
ALA
329
n
315
ALA
329
A
PHE
330
n
316
A
PHE
330
A
ALA
330
n
317
B
ALA
330
A
LYS
331
n
318
LYS
331
A
ASN
332
n
319
ASN
332
A
ASP
333
n
320
ASP
333
A
ILE
334
n
321
ILE
334
A
n
322
335
A
n
323
336
A
n
324
337
A
n
325
338
A
complete point assembly
4
tetrameric
complete point assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.39602671
0.00000000
0.91816381
0.00000000
-1.00000000
0.00000000
0.91831418
0.00000000
0.39602671
point symmetry operation
0.00000
0.00000
0.00000
0.39602671
0.00000000
-0.91816381
0.00000000
-1.00000000
0.00000000
-0.91831418
0.00000000
-0.39602671
point symmetry operation
0.00000
0.00000
0.00000
-0.59264499
0.80488991
-0.03115019
-0.80541490
-0.59176878
0.03255789
0.00773546
0.04449300
0.99897263
point symmetry operation
43.18003
12.07871
121.07681
0.59264499
0.80488991
0.03115019
0.80541490
-0.59176878
-0.03255789
-0.00773546
0.04449300
-0.99897263
point symmetry operation
43.18003
12.07871
121.07681
-0.20609758
-0.80488991
0.55648149
-0.34886418
0.59176878
0.72660902
-0.91430729
-0.04449300
-0.40272226
point symmetry operation
43.18003
12.07871
121.07681
0.20609758
-0.80488991
-0.55648149
0.34886418
0.59176878
-0.72660902
0.91430729
-0.04449300
0.40272226
point symmetry operation
43.18003
12.07871
121.07681
A
O
LYS
77
A
O
LYS
64
A
N
ILE
49
A
N
ILE
36
A
O
GLU
48
A
O
GLU
35
A
N
VAL
24
A
N
VAL
11
A
N
ILE
25
A
N
ILE
12
A
O
LEU
93
A
O
LEU
78
A
N
VAL
94
A
N
VAL
79
A
O
ILE
134
A
O
ILE
119
A
N
PHE
135
A
N
PHE
120
A
O
ARG
159
A
O
ARG
144
A
O
TYR
190
A
O
TYR
175
A
N
VAL
202
A
N
VAL
187
A
O
HIS
188
A
O
HIS
173
A
N
ASN
207
A
N
ASN
192
A
O
ALA
206
A
O
ALA
191
A
A
N
ILE
210
A
N
ILE
198
A
N
LEU
269
A
N
LEU
257
A
O
ALA
291
A
O
ALA
278
A
N
VAL
292
A
N
VAL
279
A
O
ASN
301
A
O
ASN
287
1
A
CA
ILE
334
A
CA
ILE
321
1
Y
1
A
C
ILE
334
A
C
ILE
321
1
Y
1
A
O
ILE
334
A
O
ILE
321
1
Y
1
A
CB
ILE
334
A
CB
ILE
321
1
Y
1
A
CG1
ILE
334
A
CG1
ILE
321
1
Y
1
A
CG2
ILE
334
A
CG2
ILE
321
1
Y
1
A
CD1
ILE
334
A
CD1
ILE
321
1
Y
1
A
GLU
335
A
GLU
322
1
Y
1
A
THR
336
A
THR
323
1
Y
1
A
ARG
337
A
ARG
324
1
Y
1
A
GLN
338
A
GLN
325
1
Y
1
A
A
NE
O3
ARG
AFP
173
1
0.97
1
A
A
NH1
O4
ARG
AFP
173
1
1.36
1
A
A
CZ
C4
ARG
AFP
173
1
1.73
1
A
A
NH1
C4
ARG
AFP
173
1
1.77
1
A
A
NE
C3
ARG
AFP
173
1
1.90
1
A
A
CZ
O3
ARG
AFP
173
1
1.94
1
A
A
CD
O3
ARG
AFP
173
1
1.96
1
A
A
O
O5P
VAL
AFP
268
1
1.98
1
A
A
CD2
O2P
HIS
AFP
188
1
2.12
1
A
A
CZ
O4
ARG
AFP
173
1
2.19
1
A
ALA
13
10.66
1
A
ILE
15
16.67
1
A
THR
16
-10.56
1
A
HIS
20
-11.35
1
A
VAL
27
-10.21
1
A
GLN
43
-10.09
1
A
ALA
46
10.52
1
A
SER
80
13.46
1
A
ALA
81
16.59
1
A
GLU
84
13.82
1
A
SER
86
-11.63
1
A
ASP
87
10.57
1
A
ALA
88
-10.21
1
A
GLY
99
14.45
1
A
GLN
103
22.77
1
A
GLY
106
10.83
1
A
GLU
107
12.55
1
A
ASN
116
17.31
1
A
ILE
127
-10.51
1
A
GLY
131
-11.05
1
A
LEU
133
-12.99
1
A
ALA
138
10.59
1
A
ARG
159
-17.06
1
A
GLN
174
-11.35
1
A
SER
186
-15.60
1
A
ILE
191
10.62
1
A
ASN
207
-14.82
C
1
A
VAL
209
11.61
B
1
A
ALA
210
-11.85
1
A
ALA
215
-14.63
1
A
PHE
229
-12.44
1
A
ASP
231
-10.08
1
A
GLU
238
-10.26
1
A
LYS
243
-11.24
1
A
ALA
245
-10.67
1
A
THR
246
13.79
1
A
ILE
261
10.65
1
A
TYR
274
-10.77
1
A
ASN
282
-10.15
1
A
ASP
283
-12.73
1
A
LEU
285
-13.46
1
A
GLY
288
13.30
1
A
GLU
304
10.67
1
A
PRO
306
10.82
1
A
LEU
307
-13.09
1
A
GLN
321
-13.50
1
A
LYS
324
-11.20
1
A
A
ILE
THR
15
16
-136.78
1
A
A
THR
ASP
16
17
147.04
1
A
A
SER
ALA
80
81
-148.61
1
A
A
ALA
GLU
81
84
-136.40
1
A
A
GLN
PRO
103
105
-149.70
1
A
A
HIS
PRO
216
217
-144.23
1
A
A
LEU
TYR
285
286
144.03
1
A
A
GLY
THR
288
289
-146.95
1
A
A
GLN
LEU
321
322
146.44
1
A
GLN
22
0.074
SIDE CHAIN
1
A
ASP
29
0.074
SIDE CHAIN
1
A
ASP
62
0.081
SIDE CHAIN
1
A
GLU
84
0.074
SIDE CHAIN
1
A
ASN
116
0.073
SIDE CHAIN
1
A
ASN
181
0.089
SIDE CHAIN
1
A
GLU
194
0.095
SIDE CHAIN
1
A
ASP
197
0.073
SIDE CHAIN
1
A
GLU
199
0.096
SIDE CHAIN
1
A
ASN
207
0.098
SIDE CHAIN
1
A
GLU
218
0.071
SIDE CHAIN
1
A
GLU
221
0.073
SIDE CHAIN
1
A
TYR
274
0.098
SIDE CHAIN
1
A
ASN
294
0.076
SIDE CHAIN
1
A
GLN
321
0.071
SIDE CHAIN
1
A
ASP
333
0.079
SIDE CHAIN
1
9.43
1.50
119.30
128.73
A
A
A
C
N
CA
GLN
PRO
PRO
103
105
105
Y
1
A
A
NE1
CE2
TRP
TRP
150
150
-0.120
0.013
1.371
1.251
N
1
A
A
NE1
CE2
TRP
TRP
203
203
-0.101
0.013
1.371
1.270
N
1
A
A
NE1
CE2
TRP
TRP
212
212
-0.096
0.013
1.371
1.275
N
1
A
A
CG
OD1
LYS
ASP
18
264
0.69
1_555
2_555
1
A
A
CG
CG
LYS
ASP
18
264
0.93
1_555
2_555
1
A
A
CD
CG
LYS
ASP
18
264
1.38
1_555
2_555
1
A
A
CG
OD2
LYS
ASP
18
264
1.52
1_555
2_555
1
A
A
CD
OD2
LYS
ASP
18
264
1.59
1_555
2_555
1
A
A
CE
CA
LYS
ASP
18
264
1.69
1_555
2_555
1
A
A
CB
OD2
LYS
ASP
18
264
1.90
1_555
2_555
1
A
A
CB
OD1
LYS
ASP
18
264
1.98
1_555
2_555
1
A
A
CD
OD1
LYS
ASP
18
264
1.99
1_555
2_555
1
A
A
CE
CG
LYS
ASP
18
264
2.08
1_555
2_555
1
A
A
CE
CB
LYS
ASP
18
264
2.10
1_555
2_555
1
A
SER
14
-94.56
-135.86
1
A
ASP
17
176.05
61.39
1
A
LYS
18
-50.06
101.92
1
A
ASP
19
-126.17
-86.27
1
A
ASP
29
-81.10
46.60
1
A
ALA
31
-53.36
-76.13
1
A
GLU
48
167.10
121.56
1
A
ASP
53
164.07
134.73
1
A
ILE
54
-30.56
-12.67
1
A
PHE
55
-78.93
-161.73
1
A
LYS
56
-158.49
-26.75
1
A
ILE
64
-69.40
2.80
1
A
ALA
69
-84.78
43.47
1
A
LYS
76
-156.85
-152.91
1
A
TYR
79
-127.28
-133.26
1
A
ALA
81
-106.18
-73.76
1
A
GLU
84
49.38
-157.35
1
A
ASP
87
-66.39
86.95
1
A
ALA
88
-169.06
-34.64
1
A
ASP
90
63.39
-3.20
1
A
PRO
101
-63.51
-177.17
1
A
GLU
107
91.91
97.96
1
A
THR
108
-51.79
96.60
1
A
ARG
109
-82.09
-149.16
1
A
LEU
110
-117.06
-78.36
B
1
A
ASN
132
-164.37
36.82
1
A
LEU
133
-135.47
-156.99
1
A
PHE
155
-38.30
126.94
1
A
LYS
157
-58.61
-2.27
1
A
ARG
159
165.70
-24.14
1
A
SER
163
-172.36
-86.92
1
A
THR
165
-9.99
-49.50
1
A
SER
166
-29.88
-54.03
1
A
GLN
174
-92.35
34.93
1
A
ALA
177
-54.47
-113.13
1
A
GLU
178
-26.82
-30.20
1
A
VAL
180
-103.55
-157.89
1
A
ASP
183
-39.65
152.38
1
A
ARG
185
65.79
-9.57
1
A
SER
186
-96.34
-92.41
1
A
VAL
187
-4.34
106.39
1
A
ALA
189
163.41
148.05
1
A
GLU
194
-109.59
-115.83
1
A
ASP
197
48.49
6.74
1
A
THR
198
-137.69
-34.42
1
A
ALA
206
-4.03
106.55
C
1
A
VAL
209
-69.15
-166.04
D
1
A
THR
209
-170.72
138.34
B
1
A
ALA
210
75.45
35.08
1
A
ALA
215
63.88
99.68
1
A
HIS
216
46.80
-118.95
1
A
ILE
219
127.81
-25.91
1
A
LYS
220
-106.51
61.62
1
A
GLU
221
-165.16
-30.20
1
A
ASP
222
113.76
-39.85
1
A
LYS
223
-74.14
-80.32
1
A
LEU
225
-63.68
-165.14
1
A
VAL
226
68.76
-47.81
1
A
LYS
227
-37.24
-39.14
1
A
ILE
240
-88.84
31.85
1
A
LYS
241
-116.30
-79.59
1
A
LYS
243
112.80
-84.94
1
A
ALA
245
-68.56
75.28
1
A
LEU
262
100.99
-48.05
1
A
ASP
264
72.47
46.26
1
A
ASN
266
34.32
53.48
1
A
LEU
271
-172.07
116.34
1
A
SER
272
-29.00
99.02
1
A
VAL
273
-94.64
-64.67
1
A
TYR
274
151.72
-1.81
1
A
MET
275
45.16
92.72
1
A
TYR
279
154.77
-125.10
1
A
ASN
282
-23.16
136.40
1
A
ASP
283
97.00
10.96
1
A
PRO
290
-53.97
100.20
1
A
ASN
301
89.47
123.32
1
A
PRO
306
-64.13
99.81
1
A
THR
308
114.06
-80.20
1
A
ASP
309
-163.53
-29.30
1
A
ALA
319
-57.76
0.14
1
A
LYS
323
101.98
-4.10
1
A
LYS
331
-35.19
120.45
1
A
ASN
332
153.17
63.38
1
A
ASP
333
25.74
-118.37
THERE ARE THREE ZONES OF LOW (OR NO) DENSITY CONSISTING OF
LYS 102 - LEU 110 (ACTIVE SITE LOOP), GLU 211 - VAL 226
(CRYSTAL CONTACTS), AND ILE 334 - GLN 338 (C-TERMINUS).
NO COORDINATES ARE PRESENT IN THIS ENTRY FOR THE
C-TERMINUS.
0.3740000
3.0
10.0
1
3.0
10.0
0
2479
25
0
2454
refinement
EREF
STRUCTURE DETERMINATION OF THE ALLOSTERIC L-LACTATE DEHYDROGENASE FROM LACTOBACILLUS CASEI AT 3.0 ANGSTROMS RESOLUTION
1
N
N
2
N
N
3
N
N
IN SOLUTION AS WELL AS IN THE CRYSTAL, THE MOLECULE
CONSISTS OF A TETRAMER (FOUR SUBUNITS OF IDENTICAL
SEQUENCE). THERE ARE TWO CRYSTALLOGRAPHICALLY INDEPENDENT
MOLECULES IN THE CRYSTAL. ONE TETRAMER (CALLED *CENTRAL*)
SITS ON A CRYSTALLOGRAPHIC TW0-FOLD AXIS AND A SECOND
TETRAMER (CALLED *PERIPHERAL*) SITS IN A GENERAL POSITION.
THE ASYMMETRIC UNIT, THEREFORE, CONSISTS OF TWO SUBUNITS
FROM THE *CENTRAL* MOLECULE AND ALL FOUR SUBUNITS FROM THE
*PERIPHERAL* MOLECULE. THE THREE TRANSFORMATIONS PRESENTED
ON *MTRIX* RECORDS BELOW WILL GENERATE A FULL TETRAMERIC
MOLECULE WHEN APPLIED TO THE MONOMER PRESENTED IN THIS
ENTRY. THE MONOMER PRESENTED IN THIS ENTRY IS THE *RED*
SUBUNIT. *MTRIX 1* ROTATES THE *RED* SUBUNIT ABOUT THE P
AXIS TO GENERATE THE *BLUE* SUBUNIT. *MTRIX 2* ROTATES
THE *RED* SUBUNIT ABOUT THE Q AXIS TO GENERATE THE *YELLOW*
SUBUNIT. *MTRIX 3* ROTATES THE *RED* SUBUNIT ABOUT THE *R*
AXIS TO GENERATES THE *GREEN* SUBUNIT.
THE TETRAMERIC ENZYME CRYSTALLIZES IN SPACE GROUP C 2 WITH
SIX TETRAMERS IN THE UNIT CELL. THE OVERALL ARRANGEMENT IS
CLOSE TO SPACE GROUP P 31 2 1 (WHICH IS A SUPERGROUP OF
C 2), AND ALL TETRAMERS HAVE GOOD LOCAL 222 SYMMETRY. THE
*CENTRAL* AND *PERIPHERAL* TETRAMERS ARE RELATED BY AN
APPROXIMATE NONCRYSTALLOGRAPHIC 3(1) SCREW AXIS.
FRACTIONAL COORDINATES FOR THE ASYMMETRIC UNIT OF THE
CRYSTAL CAN BE GENERATED BY APPLYING THE FOLLOWING SIX
TRANSFORMATIONS TO THE MONOMER PRESENTED IN THIS ENTRY
.003360 .004864 0.000000 0.00000
0.000000 0.000000 .011712 0.00000
.004638 -.003051 0.000000 0.00000
-.003360 .004864 0.000000 0.00000
0.000000 0.000000 -.011712 0.00000
-.004638 -.003051 0.000000 0.00000
-.001966 -.002898 .004763 .27144
-.004865 -.008091 -.006931 .14147
.004657 -.003012 .000247 .67215
.001966 .002898 .004763 .27144
.004865 .008091 -.006931 .14147
-.004657 .003012 .000247 .67215
.001966 -.002898 -.004763 .27144
.004865 -.008091 .006931 .14147
-.004657 -.003012 -.000247 .67215
-.001966 .002898 -.004763 .27144
-.004865 .008091 .006931 .14147
.004657 .003012 -.000247 .67215
A
GLY
30
A
GLY
17
HELX_P
A
GLN
43
A
GLN
30
1
AB
14
A
LYS
56
A
LYS
43
HELX_P
A
ALA
69
A
ALA
56
1
AC
14
A
ASN
114
A
ASN
98
HELX_P
A
ILE
123
A
ILE
107
1
AD
10
A
ILE
123
A
ILE
107
HELX_P
A
GLY
131
A
GLY
115
1
AE
9
A
VAL
142
A
VAL
127
HELX_P
A
GLY
154
A
GLY
139
1
A1F
13
A
GLY
164
A
GLY
149
HELX_P
A
VAL
180
A
VAL
165
1
A2F
17
A
VAL
226
A
VAL
214
HELX_P
DISTORTED
A
ALA
235
A
ALA
223
1
A1G
10
A
ALA
236
A
ALA
224
HELX_P
DISTORTED
A
LEU
242
A
LEU
230
5
A2G
7
A
PHE
247
A
PHE
235
HELX_P
A
ASN
263
A
ASN
251
1
A3G
17
A
ASP
309
A
ASP
295
HELX_P
A
ALA
330
A
ALA
317
1
AH
23
B
OXIDOREDUCTASE(CHOH(D)-NAD(A))
OXIDOREDUCTASE(CHOH(D)-NAD(A))
A
ASN
140
A
ASN
125
1
A
PRO
141
A
PRO
126
-6.85
given
1.00000000
0.00000000
-0.00000000
0.00000000
1.00000000
0.00000000
-0.00000000
0.00000000
1.00000000
0.00000
0.00000
0.00000
generate
0.39602671
0.00000000
-0.91816381
0.00000000
-1.00000000
0.00000000
-0.91831418
0.00000000
-0.39602671
0.00000
0.00000
0.00000
generate
-0.59264499
0.80488991
-0.03115019
-0.80541490
-0.59176878
0.03255789
0.00773546
0.04449300
0.99897263
43.18003
12.07871
121.07681
generate
0.59264499
0.80488991
0.03115019
0.80541490
-0.59176878
-0.03255789
-0.00773546
0.04449300
-0.99897263
43.18003
12.07871
121.07681
generate
-0.20609758
-0.80488991
0.55648149
-0.34886418
0.59176878
0.72660902
-0.91430729
-0.04449300
-0.40272226
43.18003
12.07871
121.07681
generate
0.20609758
-0.80488991
-0.55648149
0.34886418
0.59176878
-0.72660902
0.91430729
-0.04449300
0.40272226
43.18003
12.07871
121.07681
LDH_LACCA
UNP
1
1
P00343
ASITDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVV
ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQS
IAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIAT
ALARISKAILNDENAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDAFAKND
IETRQ
1
325
1LLC
13
338
P00343
A
1
1
325
1
TYR
conflict
PHE
38
1LLC
A
P00343
UNP
25
25
1
GLN
conflict
LYS
102
1LLC
A
P00343
UNP
87
87
1
LYS
conflict
GLN
103
1LLC
A
P00343
UNP
88
88
1
GLY
conflict
LEU
133
1LLC
A
P00343
UNP
118
118
1
LEU
conflict
ILE
281
1LLC
A
P00343
UNP
269
269
1
ILE
conflict
LEU
285
1LLC
A
P00343
UNP
272
272
6
3
3
3
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
76
A
LYS
63
A
SER
80
A
SER
67
A
GLN
47
A
GLN
34
A
ASP
53
A
ASP
40
A
GLN
22
A
GLN
9
A
GLY
28
A
GLY
15
A
ASP
92
A
ASP
77
A
GLY
99
A
GLY
84
A
ILE
134
A
ILE
119
A
ALA
139
A
ALA
124
A
ARG
159
A
ARG
144
A
GLY
162
A
GLY
147
A
VAL
187
A
VAL
172
A
TYR
190
A
TYR
175
A
VAL
202
A
VAL
187
A
VAL
202
A
VAL
187
A
ILE
210
A
ILE
198
A
ILE
210
A
ILE
198
A
A
A
VAL
187
A
VAL
172
A
TYR
190
A
TYR
175
A
ALA
206
A
ALA
191
A
ASN
207
A
ASN
192
A
ILE
210
A
ILE
198
A
ILE
210
A
ILE
198
A
A
A
ALA
267
A
ALA
255
A
MET
275
A
MET
263
A
LEU
285
A
LEU
272
A
ILE
293
A
ILE
280
A
GLY
297
A
GLY
284
A
LEU
303
A
LEU
289
RESIDUES CLOSE TO THE MOLECULAR P AXIS THAT BIND THE ALLOSTERIC ACTIVATOR
Author
7
RESIDUES BINDING THE SULFATE
Author
3
A
THR
169
A
THR
154
7
1_555
A
ARG
173
A
ARG
158
7
1_555
A
HIS
188
A
HIS
173
7
1_555
A
TYR
190
A
TYR
175
7
1_555
A
ARG
256
A
ARG
244
7
1_555
A
VAL
268
A
VAL
256
7
1_555
A
LEU
269
A
LEU
257
7
1_555
A
ARG
171
A
ARG
156
3
1_555
A
HIS
195
A
HIS
180
3
1_555
A
THR
246
A
THR
234
3
1_555
5
C 1 2 1