0.015373 0.008876 0.000000 0.000000 0.017752 0.000000 0.000000 0.000000 0.006606 0.00000 0.00000 0.00000 Kreusch, A. Spraggon, G. Lee, C.C. Klock, H. McMullan, D. Ng, K. Shin, T. Vincent, J. Warner, I. Ericson, C. Lesley, S.A. Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 65.048 65.048 151.371 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H7 N O5 S 169.156 n CYSTEINESULFONIC ACID L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 R C N 252 N C N 253 N S N 254 N C N 255 N O N 256 N O N 257 N O N 258 N O N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C Y 272 N C Y 273 N C Y 274 N C Y 275 N C Y 276 N C Y 277 N C N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C N 312 N O N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 R C N 326 N O N 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C N 349 N O N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N N N 363 S C N 364 N C N 365 N O N 366 N C N 367 N C N 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N doub N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing Y 264 N doub Y 265 N sing Y 266 N sing N 267 N sing Y 268 N doub N 269 N sing Y 270 N doub N 271 N sing Y 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing Y 333 N doub Y 334 N sing Y 335 N sing N 336 N sing Y 337 N doub N 338 N sing Y 339 N doub N 340 N sing Y 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing UK J.MOL.BIOL. JMOBAK 0070 0022-2836 330 309 321 10.1016/S0022-2836(03)00596-5 12823970 Structure analysis of peptide deformylases from streptococcus pneumoniae,staphylococcus aureus, thermotoga maritima, and pseudomonas aeruginosa: snapshots of the oxygen sensitivity of peptide deformylase 2003 10.2210/pdb1lme/pdb pdb_00001lme 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2002-01-08 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.0 1.0 5.0.3 ALS 1.0 SYNCHROTRON ALS BEAMLINE 5.0.3 20563.771 peptide deformylase 3.5.1.88 2 man polymer 18.015 water 103 nat water PDF no yes MGSDKIHHHHHHMYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNGPVAV INPEILEIDPETEVAEEG(OCS)LSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRIS PAKRLLLRKKLMDIARTVKR MGSDKIHHHHHHMYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNGPVAV INPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKR LLLRKKLMDIARTVKR A,B 283518 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermotoga Escherichia sample 2336 Thermotoga maritima 562 Escherichia coli plasmid pMH1 1 2.25 45.26 VAPOR DIFFUSION, SITTING DROP 6.9 PEG 3350, potassium nitrate, pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description Data collection 1 0 2003-06-24 1 1 2008-04-28 1 2 2011-07-13 1 3 2023-08-16 1 4 2023-11-15 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 1lm4 IS THE PDF STRUCTURE FROM STAPHYLOCOCCUS AUREUS 1LM6 IS THE PDF STRUCTURE FROM STREPTOCOCCUS PNEUMONIAE Y RCSB Y RCSB 2002-05-01 REL HOH water 1BS4 PDB experimental model WAT 3 2 HOH HOH 165 A WAT 4 2 HOH HOH 166 A WAT 9 2 HOH HOH 167 A WAT 13 2 HOH HOH 168 A WAT 16 2 HOH HOH 169 A WAT 17 2 HOH HOH 170 A WAT 18 2 HOH HOH 171 A WAT 19 2 HOH HOH 172 A WAT 21 2 HOH HOH 173 A WAT 23 2 HOH HOH 174 A WAT 24 2 HOH HOH 175 A WAT 25 2 HOH HOH 176 A WAT 26 2 HOH HOH 177 A WAT 27 2 HOH HOH 178 A WAT 28 2 HOH HOH 179 A WAT 29 2 HOH HOH 180 A WAT 30 2 HOH HOH 181 A WAT 31 2 HOH HOH 182 A WAT 35 2 HOH HOH 183 A WAT 39 2 HOH HOH 184 A WAT 40 2 HOH HOH 185 A WAT 42 2 HOH HOH 186 A WAT 46 2 HOH HOH 187 A WAT 50 2 HOH HOH 188 A WAT 51 2 HOH HOH 189 A WAT 52 2 HOH HOH 190 A WAT 53 2 HOH HOH 191 A WAT 56 2 HOH HOH 192 A WAT 57 2 HOH HOH 193 A WAT 58 2 HOH HOH 194 A WAT 63 2 HOH HOH 195 A WAT 66 2 HOH HOH 196 A WAT 69 2 HOH HOH 197 A WAT 72 2 HOH HOH 198 A WAT 75 2 HOH HOH 199 A WAT 77 2 HOH HOH 200 A WAT 79 2 HOH HOH 201 A WAT 80 2 HOH HOH 202 A WAT 81 2 HOH HOH 203 A WAT 82 2 HOH HOH 204 A WAT 83 2 HOH HOH 205 A WAT 84 2 HOH HOH 206 A WAT 85 2 HOH HOH 207 A WAT 86 2 HOH HOH 208 A WAT 87 2 HOH HOH 209 A WAT 90 2 HOH HOH 210 A WAT 91 2 HOH HOH 211 A WAT 92 2 HOH HOH 212 A WAT 93 2 HOH HOH 213 A WAT 101 2 HOH HOH 214 A WAT 102 2 HOH HOH 215 A WAT 103 2 HOH HOH 216 A WAT 1 2 HOH HOH 165 B WAT 2 2 HOH HOH 166 B WAT 5 2 HOH HOH 167 B WAT 6 2 HOH HOH 168 B WAT 7 2 HOH HOH 169 B WAT 8 2 HOH HOH 170 B WAT 10 2 HOH HOH 171 B WAT 11 2 HOH HOH 172 B WAT 12 2 HOH HOH 173 B WAT 14 2 HOH HOH 174 B WAT 15 2 HOH HOH 175 B WAT 20 2 HOH HOH 176 B WAT 22 2 HOH HOH 177 B WAT 32 2 HOH HOH 178 B WAT 33 2 HOH HOH 179 B WAT 34 2 HOH HOH 180 B WAT 36 2 HOH HOH 181 B WAT 37 2 HOH HOH 182 B WAT 38 2 HOH HOH 183 B WAT 41 2 HOH HOH 184 B WAT 43 2 HOH HOH 185 B WAT 44 2 HOH HOH 186 B WAT 45 2 HOH HOH 187 B WAT 47 2 HOH HOH 188 B WAT 48 2 HOH HOH 189 B WAT 49 2 HOH HOH 190 B WAT 54 2 HOH HOH 191 B WAT 55 2 HOH HOH 192 B WAT 59 2 HOH HOH 193 B WAT 60 2 HOH HOH 194 B WAT 61 2 HOH HOH 195 B WAT 62 2 HOH HOH 196 B WAT 64 2 HOH HOH 197 B WAT 65 2 HOH HOH 198 B WAT 67 2 HOH HOH 199 B WAT 68 2 HOH HOH 200 B WAT 70 2 HOH HOH 201 B WAT 71 2 HOH HOH 202 B WAT 73 2 HOH HOH 203 B WAT 74 2 HOH HOH 204 B WAT 76 2 HOH HOH 205 B WAT 78 2 HOH HOH 206 B WAT 88 2 HOH HOH 207 B WAT 89 2 HOH HOH 208 B WAT 94 2 HOH HOH 209 B WAT 95 2 HOH HOH 210 B WAT 96 2 HOH HOH 211 B WAT 97 2 HOH HOH 212 B WAT 98 2 HOH HOH 213 B WAT 99 2 HOH HOH 214 B WAT 100 2 HOH HOH 215 B n 1 -11 A n 2 -10 A n 3 -9 A ASP 1 n 4 ASP -8 A LYS 2 n 5 LYS -7 A ILE 3 n 6 ILE -6 A HIS 4 n 7 HIS -5 A HIS 5 n 8 HIS -4 A HIS 6 n 9 HIS -3 A HIS 7 n 10 HIS -2 A HIS 8 n 11 HIS -1 A HIS 9 n 12 HIS 0 A MET 1 n 13 MET 1 A TYR 2 n 14 TYR 2 A ARG 3 n 15 ARG 3 A ILE 4 n 16 ILE 4 A ARG 5 n 17 ARG 5 A VAL 6 n 18 VAL 6 A PHE 7 n 19 PHE 7 A GLY 8 n 20 GLY 8 A ASP 9 n 21 ASP 9 A PRO 10 n 22 PRO 10 A VAL 11 n 23 VAL 11 A LEU 12 n 24 LEU 12 A ARG 13 n 25 ARG 13 A LYS 14 n 26 LYS 14 A ARG 15 n 27 ARG 15 A ALA 16 n 28 ALA 16 A LYS 17 n 29 LYS 17 A PRO 18 n 30 PRO 18 A VAL 19 n 31 VAL 19 A THR 20 n 32 THR 20 A LYS 21 n 33 LYS 21 A PHE 22 n 34 PHE 22 A ASP 23 n 35 ASP 23 A GLU 24 n 36 GLU 24 A ASN 25 n 37 ASN 25 A LEU 26 n 38 LEU 26 A LYS 27 n 39 LYS 27 A LYS 28 n 40 LYS 28 A THR 29 n 41 THR 29 A ILE 30 n 42 ILE 30 A GLU 31 n 43 GLU 31 A ARG 32 n 44 ARG 32 A MET 33 n 45 MET 33 A ILE 34 n 46 ILE 34 A GLU 35 n 47 GLU 35 A THR 36 n 48 THR 36 A MET 37 n 49 MET 37 A TYR 38 n 50 TYR 38 A HIS 39 n 51 HIS 39 A TYR 40 n 52 TYR 40 A ASP 41 n 53 ASP 41 A GLY 42 n 54 GLY 42 A VAL 43 n 55 VAL 43 A GLY 44 n 56 GLY 44 A LEU 45 n 57 LEU 45 A ALA 46 n 58 ALA 46 A ALA 47 n 59 ALA 47 A PRO 48 n 60 PRO 48 A GLN 49 n 61 GLN 49 A VAL 50 n 62 VAL 50 A GLY 51 n 63 GLY 51 A ILE 52 n 64 ILE 52 A SER 53 n 65 SER 53 A GLN 54 n 66 GLN 54 A ARG 55 n 67 ARG 55 A PHE 56 n 68 PHE 56 A PHE 57 n 69 PHE 57 A VAL 58 n 70 VAL 58 A MET 59 n 71 MET 59 A ASP 60 n 72 ASP 60 A VAL 61 n 73 VAL 61 A GLY 62 n 74 GLY 62 A ASN 63 n 75 ASN 63 A GLY 64 n 76 GLY 64 A PRO 65 n 77 PRO 65 A VAL 66 n 78 VAL 66 A ALA 67 n 79 ALA 67 A VAL 68 n 80 VAL 68 A ILE 69 n 81 ILE 69 A ASN 70 n 82 ASN 70 A PRO 71 n 83 PRO 71 A GLU 72 n 84 GLU 72 A ILE 73 n 85 ILE 73 A LEU 74 n 86 LEU 74 A GLU 75 n 87 GLU 75 A ILE 76 n 88 ILE 76 A ASP 77 n 89 ASP 77 A PRO 78 n 90 PRO 78 A GLU 79 n 91 GLU 79 A THR 80 n 92 THR 80 A GLU 81 n 93 GLU 81 A VAL 82 n 94 VAL 82 A ALA 83 n 95 ALA 83 A GLU 84 n 96 GLU 84 A GLU 85 n 97 GLU 85 A GLY 86 n 98 GLY 86 A CYA 87 n 99 OCS 87 A LEU 88 n 100 LEU 88 A SER 89 n 101 SER 89 A PHE 90 n 102 PHE 90 A PRO 91 n 103 PRO 91 A GLU 92 n 104 GLU 92 A ILE 93 n 105 ILE 93 A PHE 94 n 106 PHE 94 A VAL 95 n 107 VAL 95 A GLU 96 n 108 GLU 96 A ILE 97 n 109 ILE 97 A GLU 98 n 110 GLU 98 A ARG 99 n 111 ARG 99 A SER 100 n 112 SER 100 A LYS 101 n 113 LYS 101 A ARG 102 n 114 ARG 102 A ILE 103 n 115 ILE 103 A LYS 104 n 116 LYS 104 A VAL 105 n 117 VAL 105 A LYS 106 n 118 LYS 106 A TYR 107 n 119 TYR 107 A GLN 108 n 120 GLN 108 A ASN 109 n 121 ASN 109 A THR 110 n 122 THR 110 A ARG 111 n 123 ARG 111 A GLY 112 n 124 GLY 112 A GLU 113 n 125 GLU 113 A TYR 114 n 126 TYR 114 A VAL 115 n 127 VAL 115 A GLU 116 n 128 GLU 116 A GLU 117 n 129 GLU 117 A GLU 118 n 130 GLU 118 A LEU 119 n 131 LEU 119 A GLU 120 n 132 GLU 120 A GLY 121 n 133 GLY 121 A TYR 122 n 134 TYR 122 A ALA 123 n 135 ALA 123 A ALA 124 n 136 ALA 124 A ARG 125 n 137 ARG 125 A VAL 126 n 138 VAL 126 A PHE 127 n 139 PHE 127 A GLN 128 n 140 GLN 128 A HIS 129 n 141 HIS 129 A GLU 130 n 142 GLU 130 A PHE 131 n 143 PHE 131 A ASP 132 n 144 ASP 132 A HIS 133 n 145 HIS 133 A LEU 134 n 146 LEU 134 A ASN 135 n 147 ASN 135 A GLY 136 n 148 GLY 136 A VAL 137 n 149 VAL 137 A LEU 138 n 150 LEU 138 A ILE 139 n 151 ILE 139 A ILE 140 n 152 ILE 140 A ASP 141 n 153 ASP 141 A ARG 142 n 154 ARG 142 A ILE 143 n 155 ILE 143 A SER 144 n 156 SER 144 A PRO 145 n 157 PRO 145 A n 158 146 A n 159 147 A n 160 148 A n 161 149 A n 162 150 A n 163 151 A n 164 152 A n 165 153 A n 166 154 A n 167 155 A n 168 156 A n 169 157 A n 170 158 A n 171 159 A n 172 160 A n 173 161 A n 174 162 A n 175 163 A n 176 164 A n 1 -11 B n 2 -10 B n 3 -9 B n 4 -8 B n 5 -7 B n 6 -6 B n 7 -5 B n 8 -4 B n 9 -3 B n 10 -2 B HIS 1 n 11 HIS -1 B HIS 2 n 12 HIS 0 B MET 1 n 13 MET 1 B TYR 2 n 14 TYR 2 B ARG 3 n 15 ARG 3 B ILE 4 n 16 ILE 4 B ARG 5 n 17 ARG 5 B VAL 6 n 18 VAL 6 B PHE 7 n 19 PHE 7 B GLY 8 n 20 GLY 8 B ASP 9 n 21 ASP 9 B PRO 10 n 22 PRO 10 B VAL 11 n 23 VAL 11 B LEU 12 n 24 LEU 12 B ARG 13 n 25 ARG 13 B LYS 14 n 26 LYS 14 B ARG 15 n 27 ARG 15 B ALA 16 n 28 ALA 16 B LYS 17 n 29 LYS 17 B PRO 18 n 30 PRO 18 B VAL 19 n 31 VAL 19 B THR 20 n 32 THR 20 B LYS 21 n 33 LYS 21 B PHE 22 n 34 PHE 22 B ASP 23 n 35 ASP 23 B GLU 24 n 36 GLU 24 B ASN 25 n 37 ASN 25 B LEU 26 n 38 LEU 26 B LYS 27 n 39 LYS 27 B LYS 28 n 40 LYS 28 B THR 29 n 41 THR 29 B ILE 30 n 42 ILE 30 B GLU 31 n 43 GLU 31 B ARG 32 n 44 ARG 32 B MET 33 n 45 MET 33 B ILE 34 n 46 ILE 34 B GLU 35 n 47 GLU 35 B THR 36 n 48 THR 36 B MET 37 n 49 MET 37 B TYR 38 n 50 TYR 38 B HIS 39 n 51 HIS 39 B TYR 40 n 52 TYR 40 B ASP 41 n 53 ASP 41 B GLY 42 n 54 GLY 42 B VAL 43 n 55 VAL 43 B GLY 44 n 56 GLY 44 B LEU 45 n 57 LEU 45 B ALA 46 n 58 ALA 46 B ALA 47 n 59 ALA 47 B PRO 48 n 60 PRO 48 B GLN 49 n 61 GLN 49 B VAL 50 n 62 VAL 50 B GLY 51 n 63 GLY 51 B ILE 52 n 64 ILE 52 B SER 53 n 65 SER 53 B GLN 54 n 66 GLN 54 B ARG 55 n 67 ARG 55 B PHE 56 n 68 PHE 56 B PHE 57 n 69 PHE 57 B VAL 58 n 70 VAL 58 B MET 59 n 71 MET 59 B ASP 60 n 72 ASP 60 B VAL 61 n 73 VAL 61 B GLY 62 n 74 GLY 62 B ASN 63 n 75 ASN 63 B GLY 64 n 76 GLY 64 B PRO 65 n 77 PRO 65 B VAL 66 n 78 VAL 66 B ALA 67 n 79 ALA 67 B VAL 68 n 80 VAL 68 B ILE 69 n 81 ILE 69 B ASN 70 n 82 ASN 70 B PRO 71 n 83 PRO 71 B GLU 72 n 84 GLU 72 B ILE 73 n 85 ILE 73 B LEU 74 n 86 LEU 74 B GLU 75 n 87 GLU 75 B ILE 76 n 88 ILE 76 B ASP 77 n 89 ASP 77 B PRO 78 n 90 PRO 78 B GLU 79 n 91 GLU 79 B THR 80 n 92 THR 80 B GLU 81 n 93 GLU 81 B VAL 82 n 94 VAL 82 B ALA 83 n 95 ALA 83 B GLU 84 n 96 GLU 84 B GLU 85 n 97 GLU 85 B GLY 86 n 98 GLY 86 B CYA 87 n 99 OCS 87 B LEU 88 n 100 LEU 88 B SER 89 n 101 SER 89 B PHE 90 n 102 PHE 90 B PRO 91 n 103 PRO 91 B GLU 92 n 104 GLU 92 B ILE 93 n 105 ILE 93 B PHE 94 n 106 PHE 94 B VAL 95 n 107 VAL 95 B GLU 96 n 108 GLU 96 B ILE 97 n 109 ILE 97 B GLU 98 n 110 GLU 98 B ARG 99 n 111 ARG 99 B SER 100 n 112 SER 100 B LYS 101 n 113 LYS 101 B ARG 102 n 114 ARG 102 B ILE 103 n 115 ILE 103 B LYS 104 n 116 LYS 104 B VAL 105 n 117 VAL 105 B LYS 106 n 118 LYS 106 B TYR 107 n 119 TYR 107 B GLN 108 n 120 GLN 108 B ASN 109 n 121 ASN 109 B THR 110 n 122 THR 110 B ARG 111 n 123 ARG 111 B GLY 112 n 124 GLY 112 B GLU 113 n 125 GLU 113 B TYR 114 n 126 TYR 114 B VAL 115 n 127 VAL 115 B GLU 116 n 128 GLU 116 B GLU 117 n 129 GLU 117 B GLU 118 n 130 GLU 118 B LEU 119 n 131 LEU 119 B GLU 120 n 132 GLU 120 B GLY 121 n 133 GLY 121 B TYR 122 n 134 TYR 122 B ALA 123 n 135 ALA 123 B ALA 124 n 136 ALA 124 B ARG 125 n 137 ARG 125 B VAL 126 n 138 VAL 126 B PHE 127 n 139 PHE 127 B GLN 128 n 140 GLN 128 B HIS 129 n 141 HIS 129 B GLU 130 n 142 GLU 130 B PHE 131 n 143 PHE 131 B ASP 132 n 144 ASP 132 B HIS 133 n 145 HIS 133 B LEU 134 n 146 LEU 134 B ASN 135 n 147 ASN 135 B GLY 136 n 148 GLY 136 B VAL 137 n 149 VAL 137 B LEU 138 n 150 LEU 138 B ILE 139 n 151 ILE 139 B ILE 140 n 152 ILE 140 B ASP 141 n 153 ASP 141 B ARG 142 n 154 ARG 142 B ILE 143 n 155 ILE 143 B SER 144 n 156 SER 144 B PRO 145 n 157 PRO 145 B n 158 146 B n 159 147 B n 160 148 B n 161 149 B n 162 150 B n 163 151 B n 164 152 B n 165 153 B n 166 154 B n 167 155 B n 168 156 B n 169 157 B n 170 158 B n 171 159 B n 172 160 B n 173 161 B n 174 162 B n 175 163 B n 176 164 B author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric A OCS 87 CYSTEINESULFONIC ACID A OCS 99 CYS B OCS 87 CYSTEINESULFONIC ACID B OCS 99 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 45 A N LEU 57 A O VAL 58 A O VAL 70 A N MET 59 A N MET 71 A O VAL 66 A O VAL 78 A N ILE 69 A N ILE 81 A O GLN 108 A O GLN 120 A N VAL 105 A N VAL 117 A O GLU 117 A O GLU 129 A N GLU 85 A N GLU 97 A O VAL 95 A O VAL 107 B N LEU 45 B N LEU 57 B O VAL 58 B O VAL 70 B N PHE 57 B N PHE 69 B O VAL 68 B O VAL 80 B N ILE 69 B N ILE 81 B O GLN 108 B O GLN 120 B N TYR 107 B N TYR 119 B O VAL 115 B O VAL 127 B N ALA 83 B N ALA 95 B O ILE 97 B O ILE 109 1 A MET -11 A MET 1 1 Y 1 A GLY -10 A GLY 2 1 Y 1 A SER -9 A SER 3 1 Y 1 A ALA 146 A ALA 158 1 Y 1 A LYS 147 A LYS 159 1 Y 1 A ARG 148 A ARG 160 1 Y 1 A LEU 149 A LEU 161 1 Y 1 A LEU 150 A LEU 162 1 Y 1 A LEU 151 A LEU 163 1 Y 1 A ARG 152 A ARG 164 1 Y 1 A LYS 153 A LYS 165 1 Y 1 A LYS 154 A LYS 166 1 Y 1 A LEU 155 A LEU 167 1 Y 1 A MET 156 A MET 168 1 Y 1 A ASP 157 A ASP 169 1 Y 1 A ILE 158 A ILE 170 1 Y 1 A ALA 159 A ALA 171 1 Y 1 A ARG 160 A ARG 172 1 Y 1 A THR 161 A THR 173 1 Y 1 A VAL 162 A VAL 174 1 Y 1 A LYS 163 A LYS 175 1 Y 1 A ARG 164 A ARG 176 1 Y 1 B MET -11 B MET 1 1 Y 1 B GLY -10 B GLY 2 1 Y 1 B SER -9 B SER 3 1 Y 1 B ASP -8 B ASP 4 1 Y 1 B LYS -7 B LYS 5 1 Y 1 B ILE -6 B ILE 6 1 Y 1 B HIS -5 B HIS 7 1 Y 1 B HIS -4 B HIS 8 1 Y 1 B HIS -3 B HIS 9 1 Y 1 B HIS -2 B HIS 10 1 Y 1 B ALA 146 B ALA 158 1 Y 1 B LYS 147 B LYS 159 1 Y 1 B ARG 148 B ARG 160 1 Y 1 B LEU 149 B LEU 161 1 Y 1 B LEU 150 B LEU 162 1 Y 1 B LEU 151 B LEU 163 1 Y 1 B ARG 152 B ARG 164 1 Y 1 B LYS 153 B LYS 165 1 Y 1 B LYS 154 B LYS 166 1 Y 1 B LEU 155 B LEU 167 1 Y 1 B MET 156 B MET 168 1 Y 1 B ASP 157 B ASP 169 1 Y 1 B ILE 158 B ILE 170 1 Y 1 B ALA 159 B ALA 171 1 Y 1 B ARG 160 B ARG 172 1 Y 1 B THR 161 B THR 173 1 Y 1 B VAL 162 B VAL 174 1 Y 1 B LYS 163 B LYS 175 1 Y 1 B ARG 164 B ARG 176 1 Y 1 A TYR 40 0.071 SIDE CHAIN 1 A HIS 0 76.61 -53.51 1 B PHE 22 -105.55 77.15 1 B GLU 92 71.21 -0.51 PROTEIN_REP_NEW.PARAM PROTEIN_NEW.TOP WATER_REP.PARAM WATER.TOP 27.6 1.74 3.99 0.00 1.74 0.00 -3.49 0.249 0.008 0.198 0.198 2.20 45.19 985 19503 5.1 99.8 RANDOM 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT 1BS4 FLAT MODEL 29.2696 0.379437 0.31 0.24 5 0.23 0.16 2.20 45.19 103 2570 0 0 2467 0.010 1.6 24.4 1.37 0.276 0.022 0.21 2.34 161 2986 6 5.1 98.8 27.7 2.2 45.2 1LME 19503 -3.0 0.075 1 10.8 7.4 99.8 2.2 2.34 3137 0.327 98.9 data collection HKL-2000 data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 data reduction HKL-2000 Crystal Structure of Peptide Deformylase from Thermotoga maritima 1 N N 1 N N 2 N N 2 N N A ASP 9 A ASP 21 HELX_P A ARG 13 A ARG 25 5 1 5 A ASP 23 A ASP 35 HELX_P A TYR 40 A TYR 52 1 2 18 A PRO 48 A PRO 60 HELX_P A GLY 51 A GLY 63 5 3 4 A GLY 121 A GLY 133 HELX_P A ASN 135 A ASN 147 1 4 15 A LEU 138 A LEU 150 HELX_P A ILE 143 A ILE 155 5 5 6 B ASP 9 B ASP 21 HELX_P B LYS 14 B LYS 26 5 6 6 B ASP 23 B ASP 35 HELX_P B TYR 40 B TYR 52 1 7 18 B PRO 48 B PRO 60 HELX_P B GLY 51 B GLY 63 5 8 4 B GLY 121 B GLY 133 HELX_P B LEU 134 B LEU 146 1 9 14 B LEU 138 B LEU 150 HELX_P B ARG 142 B ARG 154 5 10 5 covale 1.330 both A GLY 86 A C GLY 98 1_555 A OCS 87 A N OCS 99 1_555 covale 1.332 both A OCS 87 A C OCS 99 1_555 A LEU 88 A N LEU 100 1_555 covale 1.324 both B GLY 86 B C GLY 98 1_555 B OCS 87 B N OCS 99 1_555 covale 1.326 both B OCS 87 B C OCS 99 1_555 B LEU 88 B N LEU 100 1_555 HYDROLASE thermophile, PDF, peptide deformylase, metalloenzyme, deformylation, Structural Genomics, PSI, Protein Structure Initiative, Joint Center for Structural Genomics, JCSG, HYDROLASE DEF_THEMA UNP 1 1 P96113 MYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNGPVAVINPEILEIDPET EVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR TVKR 1 164 1LME 1 164 P96113 A 1 13 176 1 164 1LME 1 164 P96113 B 1 13 176 1 SEE REMARK 999 MET -11 1LME A P96113 UNP 1 1 SEE REMARK 999 GLY -10 1LME A P96113 UNP 2 1 SEE REMARK 999 SER -9 1LME A P96113 UNP 3 1 SEE REMARK 999 ASP -8 1LME A P96113 UNP 4 1 SEE REMARK 999 LYS -7 1LME A P96113 UNP 5 1 SEE REMARK 999 ILE -6 1LME A P96113 UNP 6 1 SEE REMARK 999 HIS -5 1LME A P96113 UNP 7 1 SEE REMARK 999 HIS -4 1LME A P96113 UNP 8 1 SEE REMARK 999 HIS -3 1LME A P96113 UNP 9 1 SEE REMARK 999 HIS -2 1LME A P96113 UNP 10 1 SEE REMARK 999 HIS -1 1LME A P96113 UNP 11 1 SEE REMARK 999 HIS 0 1LME A P96113 UNP 12 1 CYS modified residue OCS 87 1LME A P96113 UNP 87 99 2 SEE REMARK 999 MET -11 1LME B P96113 UNP 1 2 SEE REMARK 999 GLY -10 1LME B P96113 UNP 2 2 SEE REMARK 999 SER -9 1LME B P96113 UNP 3 2 SEE REMARK 999 ASP -8 1LME B P96113 UNP 4 2 SEE REMARK 999 LYS -7 1LME B P96113 UNP 5 2 SEE REMARK 999 ILE -6 1LME B P96113 UNP 6 2 SEE REMARK 999 HIS -5 1LME B P96113 UNP 7 2 SEE REMARK 999 HIS -4 1LME B P96113 UNP 8 2 SEE REMARK 999 HIS -3 1LME B P96113 UNP 9 2 SEE REMARK 999 HIS -2 1LME B P96113 UNP 10 2 SEE REMARK 999 HIS -1 1LME B P96113 UNP 11 2 SEE REMARK 999 HIS 0 1LME B P96113 UNP 12 2 CYS modified residue OCS 87 1LME B P96113 UNP 87 99 5 2 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 44 A GLY 56 A ALA 46 A ALA 58 A PHE 56 A PHE 68 A MET 59 A MET 71 A VAL 66 A VAL 78 A ILE 76 A ILE 88 A ARG 102 A ARG 114 A GLN 108 A GLN 120 A TYR 114 A TYR 126 A GLU 120 A GLU 132 A THR 80 A THR 92 A GLU 85 A GLU 97 A VAL 95 A VAL 107 A SER 100 A SER 112 B GLY 44 B GLY 56 B ALA 46 B ALA 58 B PHE 56 B PHE 68 B MET 59 B MET 71 B VAL 66 B VAL 78 B ILE 76 B ILE 88 B ARG 102 B ARG 114 B GLN 108 B GLN 120 B TYR 114 B TYR 126 B GLU 120 B GLU 132 B THR 80 B THR 92 B GLU 85 B GLU 97 B VAL 95 B VAL 107 B SER 100 B SER 112 154 P 32 2 1