0.010623
0.000000
0.000000
0.000000
0.008205
0.000000
0.000000
0.000000
0.021018
0.00000
0.00000
0.00000
Baldwin, E.T.
Harris, M.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
94.131
121.873
47.579
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
31163
31171
10.1074/jbc.M202750200
12048187
Crystal Structure of Type II peptide deformylase from Staphylococcus aureus
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
unfocused
CCD
1998-07-12
BRUKER
Si 111 reflection
MAD
M
x-ray
1
1.03321
1.0
0.97939
1.0
0.97928
1.0
17-ID
APS
1.03321, 0.97939, 0.97928
SYNCHROTRON
APS BEAMLINE 17-ID
20981.064
PROTEIN (S.aureus peptide deformylase)
3.5.1.27
R127K
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
18.015
water
427
nat
water
no
yes
(MSE)LT(MSE)KDIIRDGHPTLRQKAAELELPLTKEEKETLIA(MSE)REFLVNSQDEEIAKRYGLRSGVGLAAPQINI
SKR(MSE)IAVLIPDDGSGKSYDY(MSE)LVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNKITIKAKDIEGNDI
QLRLKGYPAIVFQHEIDHLNGV(MSE)FYDHIDKDHPLQPHTDAVEVH
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDD
GSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLN
GVMFYDHIDKDHPLQPHTDAVEVH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Staphylococcus
Escherichia
sample
DEF
1280
Staphylococcus aureus
562
Escherichia coli
JM109
pQE60
1
3.585
65.7
VAPOR DIFFUSION, HANGING DROP
8.5
10% PEG4000; 200mM MgCl2; 100mM Tris HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Version format compliance
Version format compliance
1
0
2002-06-12
1
1
2008-04-28
1
2
2011-07-13
sequence
Author has indicated that protein sequence is not
yet publically available and that residue Arg 127
was mutated to Lys 127
RCSB
Y
RCSB
2002-05-01
REL
ZN
ZINC ION
HOH
water
ZN
184
2
ZN
ZN
185
A
HOH
185
3
HOH
HOH
186
A
HOH
186
3
HOH
HOH
187
A
HOH
187
3
HOH
HOH
188
A
HOH
401
3
HOH
HOH
189
A
HOH
188
3
HOH
HOH
190
A
HOH
189
3
HOH
HOH
191
A
HOH
190
3
HOH
HOH
192
A
HOH
191
3
HOH
HOH
193
A
HOH
192
3
HOH
HOH
194
A
HOH
193
3
HOH
HOH
195
A
HOH
194
3
HOH
HOH
196
A
HOH
195
3
HOH
HOH
197
A
HOH
196
3
HOH
HOH
198
A
HOH
197
3
HOH
HOH
199
A
HOH
198
3
HOH
HOH
200
A
HOH
199
3
HOH
HOH
201
A
HOH
200
3
HOH
HOH
202
A
HOH
201
3
HOH
HOH
203
A
HOH
202
3
HOH
HOH
204
A
HOH
203
3
HOH
HOH
205
A
HOH
204
3
HOH
HOH
206
A
HOH
205
3
HOH
HOH
207
A
HOH
206
3
HOH
HOH
208
A
HOH
207
3
HOH
HOH
209
A
HOH
208
3
HOH
HOH
210
A
HOH
209
3
HOH
HOH
211
A
HOH
210
3
HOH
HOH
212
A
HOH
211
3
HOH
HOH
213
A
HOH
212
3
HOH
HOH
214
A
HOH
213
3
HOH
HOH
215
A
HOH
214
3
HOH
HOH
216
A
HOH
215
3
HOH
HOH
217
A
HOH
216
3
HOH
HOH
218
A
HOH
217
3
HOH
HOH
219
A
HOH
218
3
HOH
HOH
220
A
HOH
219
3
HOH
HOH
221
A
HOH
220
3
HOH
HOH
222
A
HOH
221
3
HOH
HOH
223
A
HOH
222
3
HOH
HOH
224
A
HOH
223
3
HOH
HOH
225
A
HOH
224
3
HOH
HOH
226
A
HOH
225
3
HOH
HOH
227
A
HOH
226
3
HOH
HOH
228
A
HOH
227
3
HOH
HOH
229
A
HOH
228
3
HOH
HOH
230
A
HOH
229
3
HOH
HOH
231
A
HOH
230
3
HOH
HOH
232
A
HOH
231
3
HOH
HOH
233
A
HOH
232
3
HOH
HOH
234
A
HOH
233
3
HOH
HOH
235
A
HOH
234
3
HOH
HOH
236
A
HOH
235
3
HOH
HOH
237
A
HOH
236
3
HOH
HOH
238
A
HOH
237
3
HOH
HOH
239
A
HOH
238
3
HOH
HOH
240
A
HOH
239
3
HOH
HOH
241
A
HOH
240
3
HOH
HOH
242
A
HOH
241
3
HOH
HOH
243
A
HOH
242
3
HOH
HOH
244
A
HOH
243
3
HOH
HOH
245
A
HOH
244
3
HOH
HOH
246
A
HOH
245
3
HOH
HOH
247
A
HOH
246
3
HOH
HOH
248
A
HOH
247
3
HOH
HOH
249
A
HOH
248
3
HOH
HOH
250
A
HOH
249
3
HOH
HOH
251
A
HOH
250
3
HOH
HOH
252
A
HOH
251
3
HOH
HOH
253
A
HOH
252
3
HOH
HOH
254
A
HOH
253
3
HOH
HOH
255
A
HOH
254
3
HOH
HOH
256
A
HOH
255
3
HOH
HOH
257
A
HOH
256
3
HOH
HOH
258
A
HOH
257
3
HOH
HOH
259
A
HOH
258
3
HOH
HOH
260
A
HOH
259
3
HOH
HOH
261
A
HOH
260
3
HOH
HOH
262
A
HOH
261
3
HOH
HOH
263
A
HOH
262
3
HOH
HOH
264
A
HOH
263
3
HOH
HOH
265
A
HOH
264
3
HOH
HOH
266
A
HOH
265
3
HOH
HOH
267
A
HOH
266
3
HOH
HOH
268
A
HOH
267
3
HOH
HOH
269
A
HOH
268
3
HOH
HOH
270
A
HOH
269
3
HOH
HOH
271
A
HOH
270
3
HOH
HOH
272
A
HOH
271
3
HOH
HOH
273
A
HOH
272
3
HOH
HOH
274
A
HOH
273
3
HOH
HOH
275
A
HOH
274
3
HOH
HOH
276
A
HOH
275
3
HOH
HOH
277
A
HOH
276
3
HOH
HOH
278
A
HOH
277
3
HOH
HOH
279
A
HOH
278
3
HOH
HOH
280
A
HOH
279
3
HOH
HOH
281
A
HOH
280
3
HOH
HOH
282
A
HOH
281
3
HOH
HOH
283
A
HOH
282
3
HOH
HOH
284
A
HOH
283
3
HOH
HOH
285
A
HOH
284
3
HOH
HOH
286
A
HOH
285
3
HOH
HOH
287
A
HOH
286
3
HOH
HOH
288
A
HOH
287
3
HOH
HOH
289
A
HOH
288
3
HOH
HOH
290
A
HOH
289
3
HOH
HOH
291
A
HOH
291
3
HOH
HOH
292
A
HOH
292
3
HOH
HOH
293
A
HOH
293
3
HOH
HOH
294
A
HOH
294
3
HOH
HOH
295
A
HOH
295
3
HOH
HOH
296
A
HOH
296
3
HOH
HOH
297
A
HOH
297
3
HOH
HOH
298
A
HOH
298
3
HOH
HOH
299
A
HOH
299
3
HOH
HOH
300
A
HOH
300
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
335
3
HOH
HOH
334
A
HOH
336
3
HOH
HOH
335
A
HOH
337
3
HOH
HOH
336
A
HOH
338
3
HOH
HOH
337
A
HOH
339
3
HOH
HOH
338
A
HOH
340
3
HOH
HOH
339
A
HOH
341
3
HOH
HOH
340
A
HOH
342
3
HOH
HOH
341
A
HOH
343
3
HOH
HOH
342
A
HOH
344
3
HOH
HOH
343
A
HOH
345
3
HOH
HOH
344
A
HOH
346
3
HOH
HOH
345
A
HOH
347
3
HOH
HOH
346
A
HOH
348
3
HOH
HOH
347
A
HOH
349
3
HOH
HOH
348
A
HOH
350
3
HOH
HOH
349
A
HOH
351
3
HOH
HOH
350
A
HOH
352
3
HOH
HOH
351
A
HOH
353
3
HOH
HOH
352
A
HOH
354
3
HOH
HOH
353
A
HOH
355
3
HOH
HOH
354
A
HOH
356
3
HOH
HOH
355
A
HOH
357
3
HOH
HOH
356
A
HOH
358
3
HOH
HOH
357
A
HOH
359
3
HOH
HOH
358
A
HOH
360
3
HOH
HOH
359
A
HOH
361
3
HOH
HOH
360
A
HOH
362
3
HOH
HOH
361
A
HOH
363
3
HOH
HOH
362
A
HOH
364
3
HOH
HOH
363
A
HOH
365
3
HOH
HOH
364
A
HOH
366
3
HOH
HOH
365
A
HOH
367
3
HOH
HOH
366
A
HOH
368
3
HOH
HOH
367
A
HOH
369
3
HOH
HOH
368
A
HOH
371
3
HOH
HOH
369
A
HOH
372
3
HOH
HOH
370
A
HOH
373
3
HOH
HOH
371
A
HOH
374
3
HOH
HOH
372
A
HOH
375
3
HOH
HOH
373
A
HOH
376
3
HOH
HOH
374
A
HOH
377
3
HOH
HOH
375
A
HOH
378
3
HOH
HOH
376
A
HOH
379
3
HOH
HOH
377
A
HOH
380
3
HOH
HOH
378
A
HOH
381
3
HOH
HOH
379
A
HOH
382
3
HOH
HOH
380
A
HOH
383
3
HOH
HOH
381
A
HOH
384
3
HOH
HOH
382
A
HOH
385
3
HOH
HOH
383
A
HOH
386
3
HOH
HOH
384
A
HOH
387
3
HOH
HOH
385
A
HOH
388
3
HOH
HOH
386
A
HOH
389
3
HOH
HOH
387
A
HOH
390
3
HOH
HOH
388
A
HOH
391
3
HOH
HOH
389
A
HOH
392
3
HOH
HOH
390
A
HOH
393
3
HOH
HOH
391
A
HOH
402
3
HOH
HOH
392
A
HOH
403
3
HOH
HOH
393
A
HOH
404
3
HOH
HOH
394
A
HOH
405
3
HOH
HOH
395
A
HOH
406
3
HOH
HOH
396
A
HOH
407
3
HOH
HOH
397
A
HOH
408
3
HOH
HOH
398
A
HOH
409
3
HOH
HOH
399
A
HOH
410
3
HOH
HOH
400
A
HOH
411
3
HOH
HOH
401
A
HOH
412
3
HOH
HOH
402
A
HOH
413
3
HOH
HOH
403
A
HOH
414
3
HOH
HOH
404
A
HOH
415
3
HOH
HOH
405
A
HOH
416
3
HOH
HOH
406
A
HOH
417
3
HOH
HOH
407
A
HOH
418
3
HOH
HOH
408
A
HOH
419
3
HOH
HOH
409
A
HOH
420
3
HOH
HOH
410
A
HOH
421
3
HOH
HOH
411
A
HOH
422
3
HOH
HOH
412
A
HOH
423
3
HOH
HOH
413
A
HOH
424
3
HOH
HOH
414
A
HOH
425
3
HOH
HOH
415
A
HOH
426
3
HOH
HOH
416
A
HOH
427
3
HOH
HOH
417
A
HOH
428
3
HOH
HOH
418
A
HOH
429
3
HOH
HOH
419
A
HOH
430
3
HOH
HOH
420
A
HOH
431
3
HOH
HOH
421
A
HOH
432
3
HOH
HOH
422
A
HOH
433
3
HOH
HOH
423
A
HOH
434
3
HOH
HOH
424
A
HOH
435
3
HOH
HOH
425
A
HOH
436
3
HOH
HOH
426
A
HOH
437
3
HOH
HOH
427
A
HOH
438
3
HOH
HOH
428
A
HOH
439
3
HOH
HOH
429
A
HOH
440
3
HOH
HOH
430
A
HOH
441
3
HOH
HOH
431
A
HOH
442
3
HOH
HOH
432
A
HOH
443
3
HOH
HOH
433
A
HOH
444
3
HOH
HOH
434
A
HOH
445
3
HOH
HOH
435
A
HOH
446
3
HOH
HOH
436
A
HOH
447
3
HOH
HOH
437
A
HOH
448
3
HOH
HOH
438
A
HOH
449
3
HOH
HOH
439
A
HOH
450
3
HOH
HOH
440
A
HOH
451
3
HOH
HOH
441
A
HOH
452
3
HOH
HOH
442
A
HOH
453
3
HOH
HOH
443
A
HOH
454
3
HOH
HOH
444
A
HOH
455
3
HOH
HOH
445
A
HOH
456
3
HOH
HOH
446
A
HOH
457
3
HOH
HOH
447
A
HOH
458
3
HOH
HOH
448
A
HOH
459
3
HOH
HOH
449
A
HOH
460
3
HOH
HOH
450
A
HOH
461
3
HOH
HOH
451
A
HOH
462
3
HOH
HOH
452
A
HOH
463
3
HOH
HOH
453
A
HOH
464
3
HOH
HOH
454
A
HOH
465
3
HOH
HOH
455
A
HOH
466
3
HOH
HOH
456
A
HOH
467
3
HOH
HOH
457
A
HOH
468
3
HOH
HOH
458
A
HOH
469
3
HOH
HOH
459
A
HOH
470
3
HOH
HOH
460
A
HOH
471
3
HOH
HOH
461
A
HOH
472
3
HOH
HOH
462
A
HOH
473
3
HOH
HOH
463
A
HOH
474
3
HOH
HOH
464
A
HOH
475
3
HOH
HOH
465
A
HOH
476
3
HOH
HOH
466
A
HOH
477
3
HOH
HOH
467
A
HOH
478
3
HOH
HOH
468
A
HOH
479
3
HOH
HOH
469
A
HOH
480
3
HOH
HOH
470
A
HOH
481
3
HOH
HOH
471
A
HOH
482
3
HOH
HOH
472
A
HOH
483
3
HOH
HOH
473
A
HOH
484
3
HOH
HOH
474
A
HOH
485
3
HOH
HOH
475
A
HOH
486
3
HOH
HOH
476
A
HOH
487
3
HOH
HOH
477
A
HOH
488
3
HOH
HOH
478
A
HOH
489
3
HOH
HOH
479
A
HOH
490
3
HOH
HOH
480
A
HOH
491
3
HOH
HOH
481
A
HOH
492
3
HOH
HOH
482
A
HOH
493
3
HOH
HOH
483
A
HOH
494
3
HOH
HOH
484
A
HOH
495
3
HOH
HOH
485
A
HOH
496
3
HOH
HOH
486
A
HOH
497
3
HOH
HOH
487
A
HOH
498
3
HOH
HOH
488
A
HOH
499
3
HOH
HOH
489
A
HOH
500
3
HOH
HOH
490
A
HOH
501
3
HOH
HOH
491
A
HOH
502
3
HOH
HOH
492
A
HOH
503
3
HOH
HOH
493
A
HOH
504
3
HOH
HOH
494
A
HOH
505
3
HOH
HOH
495
A
HOH
506
3
HOH
HOH
496
A
HOH
507
3
HOH
HOH
497
A
HOH
508
3
HOH
HOH
498
A
HOH
509
3
HOH
HOH
499
A
HOH
510
3
HOH
HOH
500
A
HOH
511
3
HOH
HOH
501
A
HOH
512
3
HOH
HOH
502
A
HOH
513
3
HOH
HOH
503
A
HOH
514
3
HOH
HOH
504
A
HOH
515
3
HOH
HOH
505
A
HOH
516
3
HOH
HOH
506
A
HOH
517
3
HOH
HOH
507
A
HOH
518
3
HOH
HOH
508
A
HOH
519
3
HOH
HOH
509
A
HOH
520
3
HOH
HOH
510
A
HOH
521
3
HOH
HOH
511
A
HOH
522
3
HOH
HOH
512
A
HOH
523
3
HOH
HOH
513
A
HOH
524
3
HOH
HOH
514
A
HOH
525
3
HOH
HOH
515
A
HOH
526
3
HOH
HOH
516
A
HOH
527
3
HOH
HOH
517
A
HOH
528
3
HOH
HOH
518
A
HOH
529
3
HOH
HOH
519
A
HOH
530
3
HOH
HOH
520
A
HOH
531
3
HOH
HOH
521
A
HOH
532
3
HOH
HOH
522
A
HOH
533
3
HOH
HOH
523
A
HOH
534
3
HOH
HOH
524
A
HOH
535
3
HOH
HOH
525
A
HOH
536
3
HOH
HOH
526
A
HOH
537
3
HOH
HOH
527
A
HOH
538
3
HOH
HOH
528
A
HOH
539
3
HOH
HOH
529
A
HOH
540
3
HOH
HOH
530
A
HOH
541
3
HOH
HOH
531
A
HOH
542
3
HOH
HOH
532
A
HOH
543
3
HOH
HOH
533
A
HOH
544
3
HOH
HOH
534
A
HOH
545
3
HOH
HOH
535
A
HOH
546
3
HOH
HOH
536
A
HOH
547
3
HOH
HOH
537
A
HOH
548
3
HOH
HOH
538
A
HOH
549
3
HOH
HOH
539
A
HOH
550
3
HOH
HOH
540
A
HOH
551
3
HOH
HOH
541
A
HOH
552
3
HOH
HOH
542
A
HOH
553
3
HOH
HOH
543
A
HOH
554
3
HOH
HOH
544
A
HOH
555
3
HOH
HOH
545
A
HOH
556
3
HOH
HOH
546
A
HOH
557
3
HOH
HOH
547
A
HOH
558
3
HOH
HOH
548
A
HOH
559
3
HOH
HOH
549
A
HOH
560
3
HOH
HOH
550
A
HOH
561
3
HOH
HOH
551
A
HOH
562
3
HOH
HOH
552
A
HOH
563
3
HOH
HOH
553
A
HOH
564
3
HOH
HOH
554
A
HOH
565
3
HOH
HOH
555
A
HOH
566
3
HOH
HOH
556
A
HOH
567
3
HOH
HOH
557
A
HOH
568
3
HOH
HOH
558
A
HOH
569
3
HOH
HOH
559
A
HOH
570
3
HOH
HOH
560
A
HOH
571
3
HOH
HOH
561
A
HOH
572
3
HOH
HOH
562
A
HOH
573
3
HOH
HOH
563
A
HOH
574
3
HOH
HOH
564
A
HOH
575
3
HOH
HOH
565
A
HOH
576
3
HOH
HOH
566
A
HOH
577
3
HOH
HOH
567
A
HOH
578
3
HOH
HOH
568
A
HOH
579
3
HOH
HOH
569
A
HOH
580
3
HOH
HOH
570
A
HOH
581
3
HOH
HOH
571
A
HOH
582
3
HOH
HOH
572
A
HOH
583
3
HOH
HOH
573
A
HOH
584
3
HOH
HOH
574
A
HOH
585
3
HOH
HOH
575
A
HOH
586
3
HOH
HOH
576
A
HOH
587
3
HOH
HOH
577
A
HOH
588
3
HOH
HOH
578
A
HOH
589
3
HOH
HOH
579
A
HOH
590
3
HOH
HOH
580
A
HOH
591
3
HOH
HOH
581
A
HOH
592
3
HOH
HOH
582
A
HOH
593
3
HOH
HOH
583
A
HOH
594
3
HOH
HOH
584
A
HOH
595
3
HOH
HOH
585
A
HOH
596
3
HOH
HOH
586
A
HOH
597
3
HOH
HOH
587
A
HOH
598
3
HOH
HOH
588
A
HOH
599
3
HOH
HOH
589
A
HOH
600
3
HOH
HOH
590
A
HOH
601
3
HOH
HOH
591
A
HOH
602
3
HOH
HOH
592
A
HOH
603
3
HOH
HOH
593
A
HOH
604
3
HOH
HOH
594
A
HOH
605
3
HOH
HOH
595
A
HOH
606
3
HOH
HOH
596
A
HOH
607
3
HOH
HOH
597
A
HOH
608
3
HOH
HOH
598
A
HOH
609
3
HOH
HOH
599
A
HOH
610
3
HOH
HOH
600
A
HOH
611
3
HOH
HOH
601
A
HOH
612
3
HOH
HOH
602
A
HOH
613
3
HOH
HOH
603
A
HOH
614
3
HOH
HOH
604
A
HOH
615
3
HOH
HOH
605
A
HOH
616
3
HOH
HOH
606
A
HOH
617
3
HOH
HOH
607
A
HOH
618
3
HOH
HOH
608
A
HOH
619
3
HOH
HOH
609
A
HOH
620
3
HOH
HOH
610
A
HOH
621
3
HOH
HOH
611
A
HOH
622
3
HOH
HOH
612
A
MSE
1
n
1
MSE
1
A
LEU
2
n
2
LEU
2
A
THR
3
n
3
THR
3
A
MSE
4
n
4
MSE
4
A
LYS
5
n
5
LYS
5
A
ASP
6
n
6
ASP
6
A
ILE
7
n
7
ILE
7
A
ILE
8
n
8
ILE
8
A
ARG
9
n
9
ARG
9
A
ASP
10
n
10
ASP
10
A
GLY
11
n
11
GLY
11
A
HIS
12
n
12
HIS
12
A
PRO
13
n
13
PRO
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
ARG
16
n
16
ARG
16
A
GLN
17
n
17
GLN
17
A
LYS
18
n
18
LYS
18
A
ALA
19
n
19
ALA
19
A
ALA
20
n
20
ALA
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
GLU
23
n
23
GLU
23
A
LEU
24
n
24
LEU
24
A
PRO
25
n
25
PRO
25
A
LEU
26
n
26
LEU
26
A
THR
27
n
27
THR
27
A
LYS
28
n
28
LYS
28
A
GLU
29
n
29
GLU
29
A
GLU
30
n
30
GLU
30
A
LYS
31
n
31
LYS
31
A
GLU
32
n
32
GLU
32
A
THR
33
n
33
THR
33
A
LEU
34
n
34
LEU
34
A
ILE
35
n
35
ILE
35
A
ALA
36
n
36
ALA
36
A
MSE
37
n
37
MSE
37
A
ARG
38
n
38
ARG
38
A
GLU
39
n
39
GLU
39
A
PHE
40
n
40
PHE
40
A
LEU
41
n
41
LEU
41
A
VAL
42
n
42
VAL
42
A
ASN
43
n
43
ASN
43
A
SER
44
n
44
SER
44
A
GLN
45
n
45
GLN
45
A
ASP
46
n
46
ASP
46
A
GLU
47
n
47
GLU
47
A
GLU
48
n
48
GLU
48
A
ILE
49
n
49
ILE
49
A
ALA
50
n
50
ALA
50
A
LYS
51
n
51
LYS
51
A
ARG
52
n
52
ARG
52
A
TYR
53
n
53
TYR
53
A
GLY
54
n
54
GLY
54
A
LEU
55
n
55
LEU
55
A
ARG
56
n
56
ARG
56
A
SER
57
n
57
SER
57
A
GLY
58
n
58
GLY
58
A
VAL
59
n
59
VAL
59
A
GLY
60
n
60
GLY
60
A
LEU
61
n
61
LEU
61
A
ALA
62
n
62
ALA
62
A
ALA
63
n
63
ALA
63
A
PRO
64
n
64
PRO
64
A
GLN
65
n
65
GLN
65
A
ILE
66
n
66
ILE
66
A
ASN
67
n
67
ASN
67
A
ILE
68
n
68
ILE
68
A
SER
69
n
69
SER
69
A
LYS
70
n
70
LYS
70
A
ARG
71
n
71
ARG
71
A
MSE
72
n
72
MSE
72
A
ILE
73
n
73
ILE
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
ILE
77
n
77
ILE
77
A
PRO
78
n
78
PRO
78
A
ASP
79
n
79
ASP
79
A
ASP
80
n
80
ASP
80
A
GLY
81
n
81
GLY
81
A
SER
82
n
82
SER
82
A
GLY
83
n
83
GLY
83
A
LYS
84
n
84
LYS
84
A
SER
85
n
85
SER
85
A
TYR
86
n
86
TYR
86
A
ASP
87
n
87
ASP
87
A
TYR
88
n
88
TYR
88
A
MSE
89
n
89
MSE
89
A
LEU
90
n
90
LEU
90
A
VAL
91
n
91
VAL
91
A
ASN
92
n
92
ASN
92
A
PRO
93
n
93
PRO
93
A
LYS
94
n
94
LYS
94
A
ILE
95
n
95
ILE
95
A
VAL
96
n
96
VAL
96
A
SER
97
n
97
SER
97
A
HIS
98
n
98
HIS
98
A
SER
99
n
99
SER
99
A
VAL
100
n
100
VAL
100
A
GLN
101
n
101
GLN
101
A
GLU
102
n
102
GLU
102
A
ALA
103
n
103
ALA
103
A
TYR
104
n
104
TYR
104
A
LEU
105
n
105
LEU
105
A
PRO
106
n
106
PRO
106
A
THR
107
n
107
THR
107
A
GLY
108
n
108
GLY
108
A
GLU
109
n
109
GLU
109
A
GLY
110
n
110
GLY
110
A
CYS
111
n
111
CYS
111
A
LEU
112
n
112
LEU
112
A
SER
113
n
113
SER
113
A
VAL
114
n
114
VAL
114
A
ASP
115
n
115
ASP
115
A
ASP
116
n
116
ASP
116
A
ASN
117
n
117
ASN
117
A
VAL
118
n
118
VAL
118
A
ALA
119
n
119
ALA
119
A
GLY
120
n
120
GLY
120
A
LEU
121
n
121
LEU
121
A
VAL
122
n
122
VAL
122
A
HIS
123
n
123
HIS
123
A
ARG
124
n
124
ARG
124
A
HIS
125
n
125
HIS
125
A
ASN
126
n
126
ASN
126
A
LYS
127
n
127
LYS
127
A
ILE
128
n
128
ILE
128
A
THR
129
n
129
THR
129
A
ILE
130
n
130
ILE
130
A
LYS
131
n
131
LYS
131
A
ALA
132
n
132
ALA
132
A
LYS
133
n
133
LYS
133
A
ASP
134
n
134
ASP
134
A
ILE
135
n
135
ILE
135
A
GLU
136
n
136
GLU
136
A
GLY
137
n
137
GLY
137
A
ASN
138
n
138
ASN
138
A
ASP
139
n
139
ASP
139
A
ILE
140
n
140
ILE
140
A
GLN
141
n
141
GLN
141
A
LEU
142
n
142
LEU
142
A
ARG
143
n
143
ARG
143
A
LEU
144
n
144
LEU
144
A
LYS
145
n
145
LYS
145
A
GLY
146
n
146
GLY
146
A
TYR
147
n
147
TYR
147
A
PRO
148
n
148
PRO
148
A
ALA
149
n
149
ALA
149
A
ILE
150
n
150
ILE
150
A
VAL
151
n
151
VAL
151
A
PHE
152
n
152
PHE
152
A
GLN
153
n
153
GLN
153
A
HIS
154
n
154
HIS
154
A
GLU
155
n
155
GLU
155
A
ILE
156
n
156
ILE
156
A
ASP
157
n
157
ASP
157
A
HIS
158
n
158
HIS
158
A
LEU
159
n
159
LEU
159
A
ASN
160
n
160
ASN
160
A
GLY
161
n
161
GLY
161
A
VAL
162
n
162
VAL
162
A
MSE
163
n
163
MSE
163
A
PHE
164
n
164
PHE
164
A
TYR
165
n
165
TYR
165
A
ASP
166
n
166
ASP
166
A
HIS
167
n
167
HIS
167
A
ILE
168
n
168
ILE
168
A
ASP
169
n
169
ASP
169
A
LYS
170
n
170
LYS
170
A
ASP
171
n
171
ASP
171
A
HIS
172
n
172
HIS
172
A
PRO
173
n
173
PRO
173
A
LEU
174
n
174
LEU
174
A
GLN
175
n
175
GLN
175
A
PRO
176
n
176
PRO
176
A
HIS
177
n
177
HIS
177
A
THR
178
n
178
THR
178
A
ASP
179
n
179
ASP
179
A
ALA
180
n
180
ALA
180
A
VAL
181
n
181
VAL
181
A
GLU
182
n
182
GLU
182
A
VAL
183
n
183
VAL
183
A
HIS
184
n
184
HIS
184
A
author_defined_assembly
1
monomeric
A
HIS
158
A
NE2
HIS
158
1_555
A
ZN
185
B
ZN
ZN
1_555
A
HOH
186
C
O
HOH
1_555
93.9
A
HIS
158
A
NE2
HIS
158
1_555
A
ZN
185
B
ZN
ZN
1_555
A
HIS
154
A
NE2
HIS
154
1_555
101.1
A
HOH
186
C
O
HOH
1_555
A
ZN
185
B
ZN
ZN
1_555
A
HIS
154
A
NE2
HIS
154
1_555
114.1
A
HIS
158
A
NE2
HIS
158
1_555
A
ZN
185
B
ZN
ZN
1_555
A
HOH
281
C
O
HOH
1_555
166.0
A
HOH
186
C
O
HOH
1_555
A
ZN
185
B
ZN
ZN
1_555
A
HOH
281
C
O
HOH
1_555
77.3
A
HIS
154
A
NE2
HIS
154
1_555
A
ZN
185
B
ZN
ZN
1_555
A
HOH
281
C
O
HOH
1_555
73.3
A
HIS
158
A
NE2
HIS
158
1_555
A
ZN
185
B
ZN
ZN
1_555
A
CYS
111
A
SG
CYS
111
1_555
90.4
A
HOH
186
C
O
HOH
1_555
A
ZN
185
B
ZN
ZN
1_555
A
CYS
111
A
SG
CYS
111
1_555
126.7
A
HIS
154
A
NE2
HIS
154
1_555
A
ZN
185
B
ZN
ZN
1_555
A
CYS
111
A
SG
CYS
111
1_555
117.0
A
HOH
281
C
O
HOH
1_555
A
ZN
185
B
ZN
ZN
1_555
A
CYS
111
A
SG
CYS
111
1_555
103.6
A
MSE
1
SELENOMETHIONINE
A
MSE
1
MET
A
MSE
4
SELENOMETHIONINE
A
MSE
4
MET
A
MSE
37
SELENOMETHIONINE
A
MSE
37
MET
A
MSE
72
SELENOMETHIONINE
A
MSE
72
MET
A
MSE
89
SELENOMETHIONINE
A
MSE
89
MET
A
MSE
163
SELENOMETHIONINE
A
MSE
163
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
61
A
N
LEU
61
A
O
ALA
74
A
O
ALA
74
A
N
VAL
75
A
N
VAL
75
A
O
TYR
88
A
O
TYR
88
A
N
VAL
91
A
N
VAL
91
A
O
LYS
133
A
O
LYS
133
A
N
ILE
128
A
N
ILE
128
A
O
LEU
144
A
O
LEU
144
A
O
ARG
124
A
O
ARG
124
A
N
ALA
103
A
N
ALA
103
A
N
TYR
104
A
N
TYR
104
A
O
VAL
181
A
O
VAL
181
1
A
A
O
O
HOH
HOH
608
608
1.01
1_555
3_656
1
A
A
O
O
HOH
HOH
369
369
1.99
1_555
3_656
1
A
A
CD1
CD1
ILE
ILE
140
140
2.08
1_555
3_656
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
GLYCEROL.PRM
GLYCEROL.TOP
18.8
5.89
0.00
0.00
-5.04
0.00
-0.85
0.212
0.005
0.18
1.90
9.99
2067
20886
9.9
95.5
RANDOM
1085747.93
1085747.93
0.00
1
RESTRAINED
THROUGHOUT
0.0
MAD
Engh & Huber
FLAT MODEL
75.0392
0.459536
0.22
0.10
1.90
9.99
427
1880
1
0
1452
0.004
1.3
22.9
0.71
0.53
1.50
0.92
2.00
0.72
2.00
1.16
2.50
0.231
0.013
0.192
2.02
310
2764
6
10.1
85.4
7.2
1.9
10
1LMH
0.042
1
7.97
4.5
97.52
1.899
1.968
0.107
data scaling
SAINT
data reduction
SAINT
phasing
MLPHARE
refinement
CNX
2000.1
Peptide deformylase
Crystal Structure of S. aureus peptide deformylase
1
N
N
2
N
N
3
N
N
A
THR
3
A
THR
3
HELX_P
A
ILE
7
A
ILE
7
5
1
5
A
HIS
12
A
HIS
12
HELX_P
A
GLN
17
A
GLN
17
5
2
6
A
THR
27
A
THR
27
HELX_P
A
GLN
45
A
GLN
45
1
3
19
A
ASP
46
A
ASP
46
HELX_P
A
TYR
53
A
TYR
53
1
4
8
A
PRO
64
A
PRO
64
HELX_P
A
ASN
67
A
ASN
67
5
5
4
A
GLY
146
A
GLY
146
HELX_P
A
ASN
160
A
ASN
160
1
6
15
A
MSE
163
A
MSE
163
HELX_P
A
ILE
168
A
ILE
168
5
7
6
covale
1.327
A
MSE
1
A
C
MSE
1
1_555
A
LEU
2
A
N
LEU
2
1_555
covale
1.329
A
THR
3
A
C
THR
3
1_555
A
MSE
4
A
N
MSE
4
1_555
covale
1.329
A
MSE
4
A
C
MSE
4
1_555
A
LYS
5
A
N
LYS
5
1_555
covale
1.330
A
ALA
36
A
C
ALA
36
1_555
A
MSE
37
A
N
MSE
37
1_555
covale
1.330
A
MSE
37
A
C
MSE
37
1_555
A
ARG
38
A
N
ARG
38
1_555
covale
1.331
A
ARG
71
A
C
ARG
71
1_555
A
MSE
72
A
N
MSE
72
1_555
covale
1.327
A
MSE
72
A
C
MSE
72
1_555
A
ILE
73
A
N
ILE
73
1_555
covale
1.328
A
TYR
88
A
C
TYR
88
1_555
A
MSE
89
A
N
MSE
89
1_555
covale
1.330
A
MSE
89
A
C
MSE
89
1_555
A
LEU
90
A
N
LEU
90
1_555
covale
1.331
A
VAL
162
A
C
VAL
162
1_555
A
MSE
163
A
N
MSE
163
1_555
covale
1.329
A
MSE
163
A
C
MSE
163
1_555
A
PHE
164
A
N
PHE
164
1_555
metalc
2.283
A
ZN
185
B
ZN
ZN
1_555
A
HIS
158
A
NE2
HIS
158
1_555
metalc
2.300
A
ZN
185
B
ZN
ZN
1_555
A
HOH
186
C
O
HOH
1_555
metalc
2.290
A
ZN
185
B
ZN
ZN
1_555
A
HIS
154
A
NE2
HIS
154
1_555
metalc
2.449
A
ZN
185
B
ZN
ZN
1_555
A
HOH
281
C
O
HOH
1_555
metalc
2.484
A
ZN
185
B
ZN
ZN
1_555
A
CYS
111
A
SG
CYS
111
1_555
HYDROLASE
zinc peptidase, HYDROLASE
A
LEU
24
A
LEU
24
1
A
PRO
25
A
PRO
25
0.00
DEF_STAAM
UNP
1
1
Q9F4L4
1
183
1LMH
1
183
Q9F4L4
A
1
1
183
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
GLY
60
A
GLY
60
A
ALA
62
A
ALA
62
A
MSE
72
A
MSE
72
A
ILE
77
A
ILE
77
A
TYR
86
A
TYR
86
A
HIS
98
A
HIS
98
A
LYS
127
A
LYS
127
A
LYS
133
A
LYS
133
A
ASP
139
A
ASP
139
A
LYS
145
A
LYS
145
A
ARG
124
A
ARG
124
A
HIS
125
A
HIS
125
A
GLU
102
A
GLU
102
A
TYR
104
A
TYR
104
A
VAL
181
A
VAL
181
A
GLU
182
A
GLU
182
BINDING SITE FOR RESIDUE ZN A 185
Software
6
A
GLN
65
A
GLN
65
6
1_555
A
CYS
111
A
CYS
111
6
1_555
A
HIS
154
A
HIS
154
6
1_555
A
HIS
158
A
HIS
158
6
1_555
A
HOH
186
C
HOH
6
1_555
A
HOH
281
C
HOH
6
1_555
20
C 2 2 21