0.013079 0.007551 0.000000 0.000000 0.015102 0.000000 0.000000 0.000000 0.018443 0.000000 0.000000 0.000000 Karlsen, S. Hough, E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 76.460 76.460 54.220 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 51 962 978 10.1107/S0907444995005105 15299765 Crystal structures of three complexes between chito-oligosaccharides and lysozyme from the rainbow trout. How distorted is the NAG sugar in site D? 1995 To be Published 0353 The Refined Crystal Structure of Lysozyme from Rainbow Trout (Oncorhynchus Mykiss) IX Eur.J.Biochem. EJBCAI 0262 0014-2956 173 269 Purification and Characterization of Two Lysozymes from Rainbow Trout (Salmo Gairdneri) 1988 10.2210/pdb1lmo/pdb pdb_00001lmo NAG B 2 HAS WRONG CHIRALITY AT ATOM C2 0.866025 0.500000 0.000000 -0.500000 0.866025 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1 DIFFRACTOMETER 1993-10 ENRAF-NONIUS FAST M x-ray 1 1.5418 1.0 1.5418 14303.068 LYSOZYME 3.2.1.17 1 nat polymer 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 18.015 water 113 nat water MUCOPEPTIDE N-ACETYLMURAMYLHYDROLASE no no KVYDRCELARALKASGMDGYAGNSLPNWVCLSKWESSYNTQATNRNTDGSTDYGIFQINSRYWCDDGRTPGAKNVCGIRC SQLLTDDLTVAIRCAKRVVLDPNGIGAWVAWRLHCQNQDLRSYVAGCGV KVYDRCELARALKASGMDGYAGNSLPNWVCLSKWESSYNTQATNRNTDGSTDYGIFQINSRYWCDDGRTPGAKNVCGIRC SQLLTDDLTVAIRCAKRVVLDPNGIGAWVAWRLHCQNQDLRSYVAGCGV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n rainbow trout Oncorhynchus sample 8022 KIDNEY Oncorhynchus mykiss 1 3.20 61.54 diffrn_detector pdbx_database_status atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_validate_chiral pdbx_validate_close_contact struct_asym struct_conn struct_ref_seq_dif struct_site struct_site_gen atom_site atom_sites chem_comp database_2 database_PDB_matrix pdbx_database_remark pdbx_validate_planes pdbx_validate_rmsd_angle struct_conn repository Initial release Carbohydrate remediation repository Remediation Coordinates and associated ncs operations (if present) transformed into standard crystal frame repository Remediation Version format compliance Advisory Version format compliance Data collection Other Advisory Atomic model Data collection Database references Derived calculations Structure summary Advisory Atomic model Data collection Database references Derived calculations Other Structure summary 1 0 1996-01-01 1 1 2008-03-24 1 2 2011-07-13 1 3 2018-04-18 2 0 2020-07-29 3 0 2023-07-26 _diffrn_detector.detector _pdbx_database_status.process_site _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.auth_seq_id_2 _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_ref_seq_dif.details _atom_site.Cartn_x _atom_site.Cartn_y _atom_sites.fract_transf_matrix[1][1] _atom_sites.fract_transf_matrix[1][2] _atom_sites.fract_transf_matrix[2][1] _atom_sites.fract_transf_matrix[2][2] _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _database_PDB_matrix.origx[1][1] _database_PDB_matrix.origx[1][2] _database_PDB_matrix.origx[2][1] _database_PDB_matrix.origx[2][2] _pdbx_validate_planes.rmsd _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_value _struct_conn.pdbx_dist_value NAG 131 n B NAG 1 NAG 130 n B NAG 2 DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Y BNL 1994-10-25 REL REL oligosaccharide DGlcpNAcb1-4DGlcpNAcb1-ROH 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 2 PDB2Glycan 1.1.0 WURCS [][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}} 2 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing n n HOH water HOH 134 3 HOH HOH 134 A HOH 135 3 HOH HOH 135 A HOH 136 3 HOH HOH 136 A HOH 137 3 HOH HOH 137 A HOH 138 3 HOH HOH 138 A HOH 139 3 HOH HOH 139 A HOH 140 3 HOH HOH 140 A HOH 141 3 HOH HOH 141 A HOH 142 3 HOH HOH 142 A HOH 143 3 HOH HOH 143 A HOH 144 3 HOH HOH 144 A HOH 145 3 HOH HOH 145 A HOH 146 3 HOH HOH 146 A HOH 147 3 HOH HOH 147 A HOH 148 3 HOH HOH 148 A HOH 149 3 HOH HOH 149 A HOH 150 3 HOH HOH 150 A HOH 151 3 HOH HOH 151 A HOH 152 3 HOH HOH 152 A HOH 153 3 HOH HOH 153 A HOH 154 3 HOH HOH 154 A HOH 155 3 HOH HOH 155 A HOH 156 3 HOH HOH 156 A HOH 157 3 HOH HOH 157 A HOH 158 3 HOH HOH 158 A HOH 159 3 HOH HOH 159 A HOH 160 3 HOH HOH 160 A HOH 161 3 HOH HOH 161 A HOH 162 3 HOH HOH 162 A HOH 163 3 HOH HOH 163 A HOH 164 3 HOH HOH 164 A HOH 165 3 HOH HOH 165 A HOH 166 3 HOH HOH 166 A HOH 167 3 HOH HOH 167 A HOH 168 3 HOH HOH 168 A HOH 169 3 HOH HOH 169 A HOH 170 3 HOH HOH 170 A HOH 171 3 HOH HOH 171 A HOH 172 3 HOH HOH 172 A HOH 173 3 HOH HOH 173 A HOH 174 3 HOH HOH 174 A HOH 175 3 HOH HOH 175 A HOH 176 3 HOH HOH 176 A HOH 177 3 HOH HOH 177 A HOH 178 3 HOH HOH 178 A HOH 179 3 HOH HOH 179 A HOH 180 3 HOH HOH 180 A HOH 181 3 HOH HOH 181 A HOH 182 3 HOH HOH 182 A HOH 183 3 HOH HOH 183 A HOH 184 3 HOH HOH 184 A HOH 185 3 HOH HOH 185 A HOH 186 3 HOH HOH 186 A HOH 187 3 HOH HOH 187 A HOH 188 3 HOH HOH 188 A HOH 189 3 HOH HOH 189 A HOH 190 3 HOH HOH 190 A HOH 191 3 HOH HOH 191 A HOH 192 3 HOH HOH 192 A HOH 193 3 HOH HOH 193 A HOH 194 3 HOH HOH 194 A HOH 195 3 HOH HOH 195 A HOH 196 3 HOH HOH 196 A HOH 197 3 HOH HOH 197 A HOH 198 3 HOH HOH 198 A HOH 199 3 HOH HOH 199 A HOH 200 3 HOH HOH 200 A HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A TYR 3 n 3 TYR 3 A ASP 4 n 4 ASP 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ARG 10 n 10 ARG 10 A ALA 11 n 11 ALA 11 A LEU 12 n 12 LEU 12 A LYS 13 n 13 LYS 13 A ALA 14 n 14 ALA 14 A SER 15 n 15 SER 15 A GLY 16 n 16 GLY 16 A MET 17 n 17 MET 17 A ASP 18 n 18 ASP 18 A GLY 19 n 19 GLY 19 A TYR 20 n 20 TYR 20 A ALA 21 n 21 ALA 21 A GLY 22 n 22 GLY 22 A ASN 23 n 23 ASN 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A PRO 26 n 26 PRO 26 A ASN 27 n 27 ASN 27 A TRP 28 n 28 TRP 28 A VAL 29 n 29 VAL 29 A CYS 30 n 30 CYS 30 A LEU 31 n 31 LEU 31 A SER 32 n 32 SER 32 A LYS 33 n 33 LYS 33 A TRP 34 n 34 TRP 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A SER 37 n 37 SER 37 A TYR 38 n 38 TYR 38 A ASN 39 n 39 ASN 39 A THR 40 n 40 THR 40 A GLN 41 n 41 GLN 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A ARG 45 n 45 ARG 45 A ASN 46 n 46 ASN 46 A THR 47 n 47 THR 47 A ASP 48 n 48 ASP 48 A GLY 49 n 49 GLY 49 A SER 50 n 50 SER 50 A THR 51 n 51 THR 51 A ASP 52 n 52 ASP 52 A TYR 53 n 53 TYR 53 A GLY 54 n 54 GLY 54 A ILE 55 n 55 ILE 55 A PHE 56 n 56 PHE 56 A GLN 57 n 57 GLN 57 A ILE 58 n 58 ILE 58 A ASN 59 n 59 ASN 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A TYR 62 n 62 TYR 62 A TRP 63 n 63 TRP 63 A CYS 64 n 64 CYS 64 A ASP 65 n 65 ASP 65 A ASP 66 n 66 ASP 66 A GLY 67 n 67 GLY 67 A ARG 68 n 68 ARG 68 A THR 69 n 69 THR 69 A PRO 70 n 70 PRO 70 A GLY 71 n 71 GLY 71 A ALA 72 n 72 ALA 72 A LYS 73 n 73 LYS 73 A ASN 74 n 74 ASN 74 A VAL 75 n 75 VAL 75 A CYS 76 n 76 CYS 76 A GLY 77 n 77 GLY 77 A ILE 78 n 78 ILE 78 A ARG 79 n 79 ARG 79 A CYS 80 n 80 CYS 80 A SER 81 n 81 SER 81 A GLN 82 n 82 GLN 82 A LEU 83 n 83 LEU 83 A LEU 84 n 84 LEU 84 A THR 85 n 85 THR 85 A ASP 86 n 86 ASP 86 A ASP 87 n 87 ASP 87 A LEU 88 n 88 LEU 88 A THR 89 n 89 THR 89 A VAL 90 n 90 VAL 90 A ALA 91 n 91 ALA 91 A ILE 92 n 92 ILE 92 A ARG 93 n 93 ARG 93 A CYS 94 n 94 CYS 94 A ALA 95 n 95 ALA 95 A LYS 96 n 96 LYS 96 A ARG 97 n 97 ARG 97 A VAL 98 n 98 VAL 98 A VAL 99 n 99 VAL 99 A LEU 100 n 100 LEU 100 A ASP 101 n 101 ASP 101 A PRO 102 n 102 PRO 102 A ASN 103 n 103 ASN 103 A GLY 104 n 104 GLY 104 A ILE 105 n 105 ILE 105 A GLY 106 n 106 GLY 106 A ALA 107 n 107 ALA 107 A TRP 108 n 108 TRP 108 A VAL 109 n 109 VAL 109 A ALA 110 n 110 ALA 110 A TRP 111 n 111 TRP 111 A ARG 112 n 112 ARG 112 A LEU 113 n 113 LEU 113 A HIS 114 n 114 HIS 114 A CYS 115 n 115 CYS 115 A GLN 116 n 116 GLN 116 A ASN 117 n 117 ASN 117 A GLN 118 n 118 GLN 118 A ASP 119 n 119 ASP 119 A LEU 120 n 120 LEU 120 A ARG 121 n 121 ARG 121 A SER 122 n 122 SER 122 A TYR 123 n 123 TYR 123 A VAL 124 n 124 VAL 124 A ALA 125 n 125 ALA 125 A GLY 126 n 126 GLY 126 A CYS 127 n 127 CYS 127 A GLY 128 n 128 GLY 128 A VAL 129 n 129 VAL 129 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASN 44 A O ASN 44 A N ASP 52 A N ASP 52 1 B C2 NAG 2 PLANAR 1 A A O O HOH HOH 236 237 2.11 1 B B O4 O5 NAG NAG 1 2 2.11 1 A ARG 61 0.100 SIDE CHAIN 1 A ARG 79 0.110 SIDE CHAIN 1 A ARG 93 0.142 SIDE CHAIN 1 -7.08 0.90 118.30 111.22 A A A CB CG OD1 ASP ASP ASP 4 4 4 N 1 3.36 0.50 120.30 123.66 A A A NE CZ NH1 ARG ARG ARG 5 5 5 N 1 -3.61 0.50 120.30 116.69 A A A NE CZ NH2 ARG ARG ARG 5 5 5 N 1 6.36 0.90 118.30 124.66 A A A CB CG OD1 ASP ASP ASP 18 18 18 N 1 6.12 0.90 118.30 124.42 A A A CB CG OD1 ASP ASP ASP 48 48 48 N 1 -6.01 0.90 118.30 112.29 A A A CB CG OD2 ASP ASP ASP 48 48 48 N 1 6.87 0.90 118.30 125.17 A A A CB CG OD1 ASP ASP ASP 52 52 52 N 1 4.81 0.50 120.30 125.11 A A A NE CZ NH1 ARG ARG ARG 61 61 61 N 1 -4.92 0.50 120.30 115.38 A A A NE CZ NH2 ARG ARG ARG 61 61 61 N 1 3.34 0.50 120.30 123.64 A A A NE CZ NH1 ARG ARG ARG 79 79 79 N 1 4.84 0.50 120.30 125.14 A A A NE CZ NH1 ARG ARG ARG 93 93 93 N 1 -5.79 0.50 120.30 114.51 A A A NE CZ NH2 ARG ARG ARG 93 93 93 N 1 8.33 0.50 120.30 128.63 A A A NE CZ NH1 ARG ARG ARG 97 97 97 N 1 -5.19 0.50 120.30 115.11 A A A NE CZ NH2 ARG ARG ARG 97 97 97 N 1 11.70 1.60 110.90 122.60 A A A CG1 CB CG2 VAL VAL VAL 99 99 99 N 1 -6.62 0.90 118.30 111.68 A A A CB CG OD2 ASP ASP ASP 119 119 119 N 1 5.26 0.50 120.30 125.56 A A A NE CZ NH1 ARG ARG ARG 121 121 121 N 1 -3.27 0.50 120.30 117.03 A A A NE CZ NH2 ARG ARG ARG 121 121 121 N 1 A A O O HOH HOH 170 170 1.18 1_555 4_556 1 A A O O HOH HOH 144 144 1.60 1_555 4_556 0.166 1.8 8.0 15737 1 3.0 1.8 8.0 113 1141 29 0 999 0.013 0.020 0.045 0.040 0.074 0.050 0.013 0.020 0.039 0.060 0.181 0.030 0.189 0.300 0.232 0.300 4.5 3.0 16.6 15.0 16.8 20.0 1LMO 15737 3. 0.033 1 91.3 data collection MADNES refinement PROLSQ data reduction MADNES THE CRYSTAL STRUCTURES OF THREE COMPLEXES BETWEEN CHITOOLIGOSACCHARIDES AND LYSOZYME FROM THE RAINBOW TROUT 1 N N 2 N N 3 N N A ARG 5 A ARG 5 HELX_P A ALA 14 A ALA 14 1 1 10 A TYR 20 A TYR 20 HELX_P A GLY 22 A GLY 22 5 2 3 A LEU 25 A LEU 25 HELX_P A SER 36 A SER 36 1 3 12 A CYS 80 A CYS 80 HELX_P A LEU 83 A LEU 83 5 4 4 A THR 89 A THR 89 HELX_P A LEU 100 A LEU 100 1 5 12 A GLY 104 A GLY 104 HELX_P A ALA 107 A ALA 107 5 6 4 A VAL 109 A VAL 109 HELX_P A HIS 114 A HIS 114 1 7 6 A ARG 121 A ARG 121 HELX_P A TYR 123 A TYR 123 5 8 3 disulf 2.002 A CYS 6 A SG CYS 6 1_555 A CYS 127 A SG CYS 127 1_555 disulf 2.029 A CYS 30 A SG CYS 30 1_555 A CYS 115 A SG CYS 115 1_555 disulf 2.038 A CYS 64 A SG CYS 64 1_555 A CYS 80 A SG CYS 80 1_555 disulf 2.026 A CYS 76 A SG CYS 76 1_555 A CYS 94 A SG CYS 94 1_555 covale 1.390 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 HYDROLASE (O-GLYCOSYL) HYDROLASE (O-GLYCOSYL) LYC2_ONCMY UNP 1 1 P11941 MRAVVVLLLVAVASAKVYDRCELARALKASGMDGYAGNSLPNWVCLSKWESSYNTQATNRNTDGSTDYGIFQINSRYWCD DGRTPGAKNVCGIRCSQLLTADLTVAIRCAKRVVLDPNGIGAWVAWRLHCQNQDLRSYVAGCGV 16 144 1LMO 1 129 P11941 A 1 1 129 1 ALA conflict ASP 86 1LMO A P11941 UNP 101 86 2 anti-parallel A THR 43 A THR 43 A ARG 45 A ARG 45 A THR 51 A THR 51 A TYR 53 A TYR 53 152 P 31 2 1