1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bernard, C.
Corzo, G.
Adachi-Akahane, S.
Foures, G.
Kanemaru, K.
Furukawa, Y.
Nakajima, T.
Darbon, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins: STRUCT.,FUNCT.,GENET.
PSFGEY
0867
0887-3585
54
195
205
10.1002/prot.10513
14696181
Solution structure of ADO1, a toxin extracted from the saliva of the assassin bug, Agriosphodrus dohrni
2004
10.2210/pdb1lmr/pdb
pdb_00001lmr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
3792.394
TOXIN ADO1
1
nat
polymer
no
no
ADDDCLPRGSKCLGENKQCCKGTTCMFYANRCVGV
ADDDCLPRGSKCLGENKQCCKGTTCMFYANRCVGV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Agriosphodrus
sample
184613
Agriosphodrus dohrni
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-08-19
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2002-05-02
REL
structures with the lowest energy
30
21
DQF-COSY
2D TOCSY
2D NOESY
DQF-COSY
2D TOCSY
2D NOESY
3.2
ambient
290
K
3.2
ambient
300
K
distance geometry, simulated annealing
21
minimized average structure
2 mm
A.T. BRUNGER ET AL.
refinement
CNS
1.0
collection
XwinNMR
2.6
processing
XwinNMR
2.6
Bartels
data analysis
XEASY
1.3
Gnthert
structure solution
DIANA
2.8
500
Bruker
DRX
ALA
1
n
1
ALA
1
A
ASP
2
n
2
ASP
2
A
ASP
3
n
3
ASP
3
A
ASP
4
n
4
ASP
4
A
CYS
5
n
5
CYS
5
A
LEU
6
n
6
LEU
6
A
PRO
7
n
7
PRO
7
A
ARG
8
n
8
ARG
8
A
GLY
9
n
9
GLY
9
A
SER
10
n
10
SER
10
A
LYS
11
n
11
LYS
11
A
CYS
12
n
12
CYS
12
A
LEU
13
n
13
LEU
13
A
GLY
14
n
14
GLY
14
A
GLU
15
n
15
GLU
15
A
ASN
16
n
16
ASN
16
A
LYS
17
n
17
LYS
17
A
GLN
18
n
18
GLN
18
A
CYS
19
n
19
CYS
19
A
CYS
20
n
20
CYS
20
A
LYS
21
n
21
LYS
21
A
GLY
22
n
22
GLY
22
A
THR
23
n
23
THR
23
A
THR
24
n
24
THR
24
A
CYS
25
n
25
CYS
25
A
MET
26
n
26
MET
26
A
PHE
27
n
27
PHE
27
A
TYR
28
n
28
TYR
28
A
ALA
29
n
29
ALA
29
A
ASN
30
n
30
ASN
30
A
ARG
31
n
31
ARG
31
A
CYS
32
n
32
CYS
32
A
VAL
33
n
33
VAL
33
A
GLY
34
n
34
GLY
34
A
VAL
35
n
35
VAL
35
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
24
A
N
THR
24
A
O
VAL
33
A
O
VAL
33
1
A
ASP
4
-67.97
-154.84
1
A
ARG
8
-68.95
77.39
1
A
CYS
12
-173.09
53.02
1
A
LEU
13
-68.68
-70.40
1
A
CYS
19
-69.95
-177.07
1
A
ARG
31
-174.46
129.04
2
A
ASP
2
-60.44
-176.89
2
A
ASP
4
-60.79
-79.52
2
A
CYS
5
-60.38
-174.45
2
A
ARG
8
-68.64
72.53
2
A
LEU
13
-69.90
-78.72
2
A
CYS
19
-69.89
-176.71
3
A
ASP
4
-68.04
-154.90
3
A
CYS
5
56.93
-162.83
3
A
ARG
8
-68.10
75.57
3
A
CYS
12
-177.72
54.02
3
A
LEU
13
-69.54
-72.04
3
A
CYS
19
-69.92
-162.79
4
A
ASP
3
-74.05
-168.18
4
A
ASP
4
-67.60
-154.84
4
A
ARG
8
-68.80
76.12
4
A
CYS
12
-170.69
51.16
4
A
LEU
13
-69.85
-72.53
4
A
ARG
31
-174.61
145.83
5
A
ASP
2
-98.87
31.67
5
A
ASP
4
-68.02
-154.86
5
A
CYS
5
58.13
-161.71
5
A
ARG
8
-68.68
72.17
5
A
CYS
12
-142.36
25.30
5
A
LEU
13
-77.86
-81.68
5
A
ARG
31
-173.49
139.65
6
A
ARG
8
-68.77
79.86
6
A
CYS
12
-154.82
39.69
6
A
LEU
13
-72.62
-73.77
6
A
ARG
31
-171.79
148.73
7
A
ASP
4
-68.00
-154.96
7
A
ARG
8
-68.78
78.23
7
A
CYS
12
-142.79
26.96
7
A
LEU
13
-69.91
-82.37
8
A
ASP
4
-60.35
-79.68
8
A
CYS
5
49.79
-169.04
8
A
ARG
8
-69.82
24.55
8
A
CYS
12
-141.51
22.80
8
A
LEU
13
-69.74
-76.54
9
A
CYS
5
58.64
-169.79
9
A
ARG
8
-68.82
76.54
9
A
CYS
12
-144.50
37.39
9
A
LEU
13
-69.86
-148.56
9
A
GLU
15
-37.48
130.88
9
A
ARG
31
-170.63
136.21
10
A
ASP
2
-176.51
131.47
10
A
ASP
4
-57.85
-78.39
10
A
CYS
5
-59.64
-170.25
10
A
ARG
8
-68.68
81.47
10
A
CYS
12
-150.95
41.26
10
A
LEU
13
-69.71
-74.46
11
A
ASP
2
-98.37
35.39
11
A
ASP
3
-148.92
35.56
11
A
ASP
4
-68.08
-154.87
11
A
ARG
8
-68.49
82.16
11
A
LEU
13
-69.16
-148.98
11
A
GLU
15
-37.96
125.20
11
A
ARG
31
-175.30
132.35
12
A
ASP
3
-60.35
-173.95
12
A
ARG
8
-68.74
81.62
12
A
CYS
12
-142.15
17.72
12
A
ARG
31
-170.00
148.80
13
A
CYS
5
58.92
-169.07
13
A
ARG
8
-68.76
77.56
13
A
CYS
12
-156.80
33.28
13
A
LEU
13
-69.93
-71.16
13
A
ARG
31
-175.10
137.24
14
A
ARG
8
-68.78
72.09
14
A
CYS
12
-140.32
21.58
14
A
LEU
13
-69.96
-81.35
14
A
CYS
19
-69.96
-166.65
15
A
ASP
2
-60.32
-177.39
15
A
ASP
3
-69.81
-169.39
15
A
ASP
4
-61.05
-80.52
15
A
CYS
5
-87.81
-87.09
15
A
LEU
6
-168.96
83.66
15
A
ARG
8
-68.67
78.08
15
A
CYS
12
-156.12
26.20
15
A
LEU
13
-71.09
-71.64
15
A
ARG
31
-176.48
148.03
16
A
ASP
3
-65.55
79.18
16
A
CYS
5
-58.73
-167.21
16
A
ARG
8
-68.75
73.55
16
A
CYS
12
-153.18
42.37
16
A
LEU
13
-69.59
-75.20
16
A
ARG
31
-174.58
139.81
17
A
ASP
4
-68.04
-154.88
17
A
CYS
5
59.11
-169.19
17
A
ARG
8
-68.82
76.19
17
A
CYS
12
-161.14
46.38
17
A
LEU
13
-69.90
-78.89
17
A
CYS
19
-69.98
-167.25
17
A
ARG
31
-174.99
135.46
18
A
ASP
4
-58.11
-79.09
18
A
CYS
5
58.31
-170.28
18
A
ARG
8
-68.69
79.12
18
A
CYS
12
-151.83
39.37
18
A
LEU
13
-69.86
-80.90
18
A
CYS
19
-69.93
-179.93
18
A
ARG
31
-179.55
124.59
19
A
CYS
5
58.55
-163.73
19
A
ARG
8
-68.64
72.48
19
A
CYS
12
-143.66
36.88
19
A
LEU
13
-69.55
-76.48
20
A
ASP
2
-150.75
80.22
20
A
ASP
4
-68.02
-154.92
20
A
CYS
5
57.95
-163.38
20
A
ARG
8
-68.33
78.78
20
A
CYS
12
-162.17
46.83
20
A
LEU
13
-69.89
-73.13
20
A
CYS
19
-69.93
-172.03
21
A
ASP
2
-111.68
-165.82
21
A
ASP
3
64.62
70.99
21
A
ASP
4
-61.62
-76.28
21
A
CYS
5
65.00
-172.06
21
A
ARG
8
-68.65
71.12
21
A
CYS
12
-155.65
29.12
21
A
LEU
13
-84.95
-82.87
21
A
ARG
31
-171.39
140.74
minimized average
Solution of ADO1, a Toxin from the Assassin Bugs Agriosphodrus dohrni that Blocks the Voltage Sensitive Calcium Channel L-type
1
N
N
disulf
2.031
A
CYS
5
A
SG
CYS
5
1_555
A
CYS
20
A
SG
CYS
20
1_555
disulf
2.029
A
CYS
12
A
SG
CYS
12
1_555
A
CYS
25
A
SG
CYS
25
1_555
disulf
2.031
A
CYS
19
A
SG
CYS
19
1_555
A
CYS
32
A
SG
CYS
32
1_555
TOXIN
ICK, TOXIN
ADO1_AGRDO
UNP
1
1
P58608
ADDDCLPRGSKCLGENKQCCKGTTCMFYANRCVGV
1
35
1LMR
1
35
P58608
A
1
1
35
2
anti-parallel
A
THR
23
A
THR
23
A
MET
26
A
MET
26
A
ARG
31
A
ARG
31
A
GLY
34
A
GLY
34