0.017445
0.010072
0.000000
0.000000
0.020143
0.000000
0.000000
0.000000
0.014105
0.00000
0.00000
0.00000
Ostheimer, G.J.
Barkan, A.
Matthews, B.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
57.324
57.324
70.895
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
O
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
R
C
N
286
N
O
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
UK
Structure
STRUE6
2005
0969-2126
10
1593
1601
10.1016/S0969-2126(02)00886-9
12429100
Crystal structure of E. coli YhbY: a representative of a novel class of RNA binding proteins
2002
10.2210/pdb1ln4/pdb
pdb_00001ln4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
1
CCD
2001-06-28
ADSC QUANTUM 4
CCD
2001-06-28
ADSC QUANTUM 4
DOUBLE CRYSTAL SI
MAD
M
x-ray
1
SINGLE CRYSTAL SI CYLINDRICALLY BENT
SINGLE WAVELENGTH
M
x-ray
1
0.9611
1.0
0.9793
1.0
0.9792
1.0
1.000
1.0
5.0.2
ALS
0.9611,0.9793,0.9792
SYNCHROTRON
ALS BEAMLINE 5.0.2
5.0.1
ALS
1.000
SYNCHROTRON
ALS BEAMLINE 5.0.1
11717.667
Hypothetical protein yhbY
N2D,R97L
1
man
polymer
18.015
water
107
nat
water
yhbY
no
no
MDLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGK
TLVLYRPTKERKISLPLEHHHHHH
MDLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGK
TLVLYRPTKERKISLPLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
YHBY
562
Escherichia coli
562
Escherichia coli
BL21 (DE3) Gold
plasmid
pET28b
1
2.87
57.12
VAPOR DIFFUSION, HANGING DROP
8.5
PEG 200, sodium chloride, tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Data collection
1
0
2002-05-15
1
1
2008-04-28
1
2
2011-07-13
1
3
2021-10-27
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2002-05-02
REL
REL
HOH
water
HOH
1
2
HOH
HOH
105
A
HOH
2
2
HOH
HOH
106
A
HOH
3
2
HOH
HOH
107
A
HOH
4
2
HOH
HOH
108
A
HOH
5
2
HOH
HOH
109
A
HOH
6
2
HOH
HOH
110
A
HOH
7
2
HOH
HOH
111
A
HOH
8
2
HOH
HOH
112
A
HOH
9
2
HOH
HOH
113
A
HOH
10
2
HOH
HOH
114
A
HOH
11
2
HOH
HOH
115
A
HOH
12
2
HOH
HOH
116
A
HOH
13
2
HOH
HOH
117
A
HOH
14
2
HOH
HOH
118
A
HOH
15
2
HOH
HOH
119
A
HOH
16
2
HOH
HOH
120
A
HOH
17
2
HOH
HOH
121
A
HOH
18
2
HOH
HOH
122
A
HOH
19
2
HOH
HOH
123
A
HOH
20
2
HOH
HOH
124
A
HOH
21
2
HOH
HOH
125
A
HOH
22
2
HOH
HOH
126
A
HOH
23
2
HOH
HOH
127
A
HOH
24
2
HOH
HOH
128
A
HOH
25
2
HOH
HOH
129
A
HOH
26
2
HOH
HOH
130
A
HOH
27
2
HOH
HOH
131
A
HOH
28
2
HOH
HOH
132
A
HOH
29
2
HOH
HOH
133
A
HOH
30
2
HOH
HOH
134
A
HOH
31
2
HOH
HOH
135
A
HOH
32
2
HOH
HOH
136
A
HOH
33
2
HOH
HOH
137
A
HOH
34
2
HOH
HOH
138
A
HOH
35
2
HOH
HOH
139
A
HOH
36
2
HOH
HOH
140
A
HOH
37
2
HOH
HOH
141
A
HOH
38
2
HOH
HOH
142
A
HOH
39
2
HOH
HOH
143
A
HOH
40
2
HOH
HOH
144
A
HOH
41
2
HOH
HOH
145
A
HOH
42
2
HOH
HOH
146
A
HOH
43
2
HOH
HOH
147
A
HOH
44
2
HOH
HOH
148
A
HOH
45
2
HOH
HOH
149
A
HOH
46
2
HOH
HOH
150
A
HOH
47
2
HOH
HOH
151
A
HOH
48
2
HOH
HOH
152
A
HOH
49
2
HOH
HOH
153
A
HOH
50
2
HOH
HOH
154
A
HOH
51
2
HOH
HOH
155
A
HOH
52
2
HOH
HOH
156
A
HOH
53
2
HOH
HOH
157
A
HOH
54
2
HOH
HOH
158
A
HOH
55
2
HOH
HOH
159
A
HOH
56
2
HOH
HOH
160
A
HOH
57
2
HOH
HOH
161
A
HOH
58
2
HOH
HOH
162
A
HOH
59
2
HOH
HOH
163
A
HOH
60
2
HOH
HOH
164
A
HOH
61
2
HOH
HOH
165
A
HOH
62
2
HOH
HOH
166
A
HOH
63
2
HOH
HOH
167
A
HOH
64
2
HOH
HOH
168
A
HOH
65
2
HOH
HOH
169
A
HOH
66
2
HOH
HOH
170
A
HOH
67
2
HOH
HOH
171
A
HOH
68
2
HOH
HOH
172
A
HOH
69
2
HOH
HOH
173
A
HOH
70
2
HOH
HOH
174
A
HOH
71
2
HOH
HOH
175
A
HOH
72
2
HOH
HOH
176
A
HOH
73
2
HOH
HOH
177
A
HOH
74
2
HOH
HOH
178
A
HOH
75
2
HOH
HOH
179
A
HOH
76
2
HOH
HOH
180
A
HOH
77
2
HOH
HOH
181
A
HOH
78
2
HOH
HOH
182
A
HOH
79
2
HOH
HOH
183
A
HOH
80
2
HOH
HOH
184
A
HOH
81
2
HOH
HOH
185
A
HOH
82
2
HOH
HOH
186
A
HOH
83
2
HOH
HOH
187
A
HOH
84
2
HOH
HOH
188
A
HOH
85
2
HOH
HOH
189
A
HOH
86
2
HOH
HOH
190
A
HOH
87
2
HOH
HOH
191
A
HOH
88
2
HOH
HOH
192
A
HOH
89
2
HOH
HOH
193
A
HOH
90
2
HOH
HOH
194
A
HOH
91
2
HOH
HOH
195
A
HOH
92
2
HOH
HOH
196
A
HOH
93
2
HOH
HOH
197
A
HOH
94
2
HOH
HOH
198
A
HOH
95
2
HOH
HOH
199
A
HOH
96
2
HOH
HOH
200
A
HOH
97
2
HOH
HOH
201
A
HOH
98
2
HOH
HOH
202
A
HOH
99
2
HOH
HOH
203
A
HOH
100
2
HOH
HOH
204
A
HOH
101
2
HOH
HOH
205
A
HOH
102
2
HOH
HOH
206
A
HOH
103
2
HOH
HOH
207
A
HOH
104
2
HOH
HOH
208
A
HOH
105
2
HOH
HOH
209
A
HOH
106
2
HOH
HOH
210
A
HOH
107
2
HOH
HOH
211
A
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
LEU
3
n
3
LEU
3
A
SER
4
n
4
SER
4
A
THR
5
n
5
THR
5
A
LYS
6
n
6
LYS
6
A
GLN
7
n
7
GLN
7
A
LYS
8
n
8
LYS
8
A
GLN
9
n
9
GLN
9
A
HIS
10
n
10
HIS
10
A
LEU
11
n
11
LEU
11
A
LYS
12
n
12
LYS
12
A
GLY
13
n
13
GLY
13
A
LEU
14
n
14
LEU
14
A
ALA
15
n
15
ALA
15
A
HIS
16
n
16
HIS
16
A
PRO
17
n
17
PRO
17
A
LEU
18
n
18
LEU
18
A
LYS
19
n
19
LYS
19
A
PRO
20
n
20
PRO
20
A
VAL
21
n
21
VAL
21
A
VAL
22
n
22
VAL
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
GLY
25
n
25
GLY
25
A
SER
26
n
26
SER
26
A
ASN
27
n
27
ASN
27
A
GLY
28
n
28
GLY
28
A
LEU
29
n
29
LEU
29
A
THR
30
n
30
THR
30
A
GLU
31
n
31
GLU
31
A
GLY
32
n
32
GLY
32
A
VAL
33
n
33
VAL
33
A
LEU
34
n
34
LEU
34
A
ALA
35
n
35
ALA
35
A
GLU
36
n
36
GLU
36
A
ILE
37
n
37
ILE
37
A
GLU
38
n
38
GLU
38
A
GLN
39
n
39
GLN
39
A
ALA
40
n
40
ALA
40
A
LEU
41
n
41
LEU
41
A
GLU
42
n
42
GLU
42
A
HIS
43
n
43
HIS
43
A
HIS
44
n
44
HIS
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ILE
47
n
47
ILE
47
A
LYS
48
n
48
LYS
48
A
VAL
49
n
49
VAL
49
A
LYS
50
n
50
LYS
50
A
ILE
51
n
51
ILE
51
A
ALA
52
n
52
ALA
52
A
THR
53
n
53
THR
53
A
GLU
54
n
54
GLU
54
A
ASP
55
n
55
ASP
55
A
ARG
56
n
56
ARG
56
A
GLU
57
n
57
GLU
57
A
THR
58
n
58
THR
58
A
LYS
59
n
59
LYS
59
A
THR
60
n
60
THR
60
A
LEU
61
n
61
LEU
61
A
ILE
62
n
62
ILE
62
A
VAL
63
n
63
VAL
63
A
GLU
64
n
64
GLU
64
A
ALA
65
n
65
ALA
65
A
ILE
66
n
66
ILE
66
A
VAL
67
n
67
VAL
67
A
ARG
68
n
68
ARG
68
A
GLU
69
n
69
GLU
69
A
THR
70
n
70
THR
70
A
GLY
71
n
71
GLY
71
A
ALA
72
n
72
ALA
72
A
CYS
73
n
73
CYS
73
A
ASN
74
n
74
ASN
74
A
VAL
75
n
75
VAL
75
A
GLN
76
n
76
GLN
76
A
VAL
77
n
77
VAL
77
A
ILE
78
n
78
ILE
78
A
GLY
79
n
79
GLY
79
A
LYS
80
n
80
LYS
80
A
THR
81
n
81
THR
81
A
LEU
82
n
82
LEU
82
A
VAL
83
n
83
VAL
83
A
LEU
84
n
84
LEU
84
A
TYR
85
n
85
TYR
85
A
ARG
86
n
86
ARG
86
A
PRO
87
n
87
PRO
87
A
THR
88
n
88
THR
88
A
LYS
89
n
89
LYS
89
A
GLU
90
n
90
GLU
90
A
ARG
91
n
91
ARG
91
A
LYS
92
n
92
LYS
92
A
ILE
93
n
93
ILE
93
A
SER
94
n
94
SER
94
A
LEU
95
n
95
LEU
95
A
PRO
96
n
96
PRO
96
A
LEU
97
n
97
LEU
97
A
GLU
98
n
98
GLU
98
A
n
99
99
A
n
100
100
A
n
101
101
A
n
102
102
A
n
103
103
A
n
104
104
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
24
A
N
LEU
24
A
O
LYS
50
A
O
LYS
50
A
N
VAL
49
A
N
VAL
49
A
O
LEU
82
A
O
LEU
82
A
O
THR
81
A
O
THR
81
A
N
ILE
78
A
N
ILE
78
1
A
HIS
99
A
HIS
99
1
Y
1
A
HIS
100
A
HIS
100
1
Y
1
A
HIS
101
A
HIS
101
1
Y
1
A
HIS
102
A
HIS
102
1
Y
1
A
HIS
103
A
HIS
103
1
Y
1
A
HIS
104
A
HIS
104
1
Y
1
-5.81
0.90
118.30
112.49
A
A
A
CB
CG
OD2
ASP
ASP
ASP
2
2
2
N
1
8.57
0.90
118.30
126.87
A
A
A
CB
CG
OD1
ASP
ASP
ASP
55
55
55
N
1
3.10
0.50
120.30
123.40
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
56
56
56
N
1
-3.05
0.50
120.30
117.25
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
68
68
68
N
1
-3.34
0.50
120.30
116.96
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
86
86
86
N
1
A
A
CD
OE2
GLU
GLU
57
57
0.068
0.011
1.252
1.320
N
1
A
GLU
45
69.92
-52.10
PHASES WERE DETERMINED USING A 3-WAVELENGTH MAD DATASET COLLECTED ON A SINGLE CRYSTAL. THE STRUCTURE WAS REFINED AGAINST AN ADDITIONAL MONOCHROMATIC DATASET THAT WAS COLLECTED USING THE SAME CRYSTAL.
0.223
0.192
0.193
0.193
1.5
20.0
1119
22103
22061
5
100
random
1
TNT BCORREL V1.0
THROUGHOUT
0
0
MAD
TNT GEOMETRY V1.0
207.501
0.82848
1.5
20.0
107
876
0
0
769
0.015
777
0.400
2.766
1044
0.500
16.125
487
0.00
0
0.004
19
2.00
0.011
106
4.00
6.360
777
0.100
0.018
11
10.00
14
1.5
20.0
1LN4
22101
22089
0
0
0.074
0.074
1,2
4.5
10.6
99.9
0.139
1.5
1.58
4.5
3170
0.139
10.6
99.9
data reduction
MOSFLM
phasing
SOLVE
data scaling
SCALA
refinement
TNT
5F
data scaling
CCP4
(SCALA)
CRYSTAL STRUCTURE OF E. COLI YHBY
1
N
N
2
N
N
A
SER
4
A
SER
4
HELX_P
A
HIS
16
A
HIS
16
1
1
13
A
THR
30
A
THR
30
HELX_P
A
GLU
45
A
GLU
45
1
2
16
A
ASP
55
A
ASP
55
HELX_P
A
GLY
71
A
GLY
71
1
3
17
RNA BINDING PROTEIN
PUTATIVE RNA-BINDING PROTEIN; PUTATIVE TRANSLATION FACTOR, RNA BINDING PROTEIN
YHBY_ECOLI
UNP
1
1
P42550
MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGK
TLVLYRPTKERKISLPR
1
97
1LN4
1
97
P42550
A
1
1
97
1
ASN
engineered mutation
ASP
2
1LN4
A
P42550
UNP
2
2
1
ARG
engineered mutation
LEU
97
1LN4
A
P42550
UNP
97
97
1
expression tag
GLU
98
1LN4
A
P42550
UNP
98
1
expression tag
HIS
99
1LN4
A
P42550
UNP
99
1
expression tag
HIS
100
1LN4
A
P42550
UNP
100
1
expression tag
HIS
101
1LN4
A
P42550
UNP
101
1
expression tag
HIS
102
1LN4
A
P42550
UNP
102
1
expression tag
HIS
103
1LN4
A
P42550
UNP
103
1
expression tag
HIS
104
1LN4
A
P42550
UNP
104
4
parallel
anti-parallel
anti-parallel
A
VAL
22
A
VAL
22
A
LEU
24
A
LEU
24
A
LEU
46
A
LEU
46
A
ILE
51
A
ILE
51
A
THR
81
A
THR
81
A
TYR
85
A
TYR
85
A
CYS
73
A
CYS
73
A
ILE
78
A
ILE
78
154
P 32 2 1