0.020533 0.000000 0.000000 0.000000 0.012445 0.000000 0.000000 0.000000 0.007993 0.00000 0.00000 0.00000 Hugot, M. Reymond, J.L. Baumann, U. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 48.703 80.355 125.103 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 99 9674 9678 10.1073/pnas.142286599 12093912 A structural basis for the activity of retro-Diels-Alder catalytic antibodies: evidence for a catalytic aromatic residue. 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 Yale mirrors IMAGE PLATE 1999-10-10 RIGAKU RAXIS IV SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 23994.537 If kappa light chain Fab fragment 1 nat polymer 23656.791 Ig gamma 2a heavy chain 1 nat polymer 18.015 water 19 nat water Catalytic antibody 9D9 no no DVLLTQTPLSLPVSLGDQASISCRSSQTIVHTNGNTYFEWYLQKPGQSPHLLIYKVSNRLSGVPDRFSGSGSGTDFTLKI SRVEAEDLGLYYCFQGSHSPWTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN DVLLTQTPLSLPVSLGDQASISCRSSQTIVHTNGNTYFEWYLQKPGQSPHLLIYKVSNRLSGVPDRFSGSGSGTDFTLKI SRVEAEDLGLYYCFQGSHSPWTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN L polypeptide(L) no no ELKLVETGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTL QMSRLRSEDTAIYYCARGTSFVRYFDVWGAGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTQVDKKIVPRAA ELKLVETGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTL QMSRLRSEDTAIYYCARGTSFVRYFDVWGAGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTQVDKKIVPRAA H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse The antibodies were isolated from hybridoma cells and Fab fragments were generated by papain digestion. Mus sample 10090 Mus musculus house mouse The antibodies were isolated from hybridoma cells and Fab fragments were generated by papain digestion. Mus sample 10090 Mus musculus 1 2.57 52.09 VAPOR DIFFUSION, HANGING DROP 7.8 PEG4000, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 290K 290 software repository Initial release Version format compliance Version format compliance Data collection Refinement description 1 0 2002-07-03 1 1 2008-04-28 1 2 2011-07-13 1 3 2019-07-24 _software.classification _software.name _software.version Catalytic Retro-Diels-Alderase Transition State Analogue Complex Retro-Diels-Alderase Catalytic Antibody Retro-Diels-Alderase Catalytic Antibody At the time of processing, this sequence has not yet been deposited in a sequence database. RCSB Y RCSB 2002-05-06 REL HOH water HOH 3 3 HOH HOH 218 L HOH 4 3 HOH HOH 219 L HOH 5 3 HOH HOH 220 L HOH 6 3 HOH HOH 221 L HOH 7 3 HOH HOH 222 L HOH 8 3 HOH HOH 223 L HOH 10 3 HOH HOH 224 L HOH 13 3 HOH HOH 225 L HOH 14 3 HOH HOH 226 L HOH 16 3 HOH HOH 227 L HOH 19 3 HOH HOH 228 L HOH 1 3 HOH HOH 221 H HOH 2 3 HOH HOH 222 H HOH 9 3 HOH HOH 223 H HOH 11 3 HOH HOH 224 H HOH 12 3 HOH HOH 225 H HOH 15 3 HOH HOH 226 H HOH 17 3 HOH HOH 227 H HOH 18 3 HOH HOH 228 H ASP 1 n 1 ASP 1 L VAL 2 n 2 VAL 2 L LEU 3 n 3 LEU 3 L LEU 4 n 4 LEU 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L THR 7 n 7 THR 7 L PRO 8 n 8 PRO 8 L LEU 9 n 9 LEU 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L PRO 12 n 12 PRO 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L ASP 17 n 17 ASP 17 L GLN 18 n 18 GLN 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L THR 28 n 28 THR 28 L ILE 29 n 29 ILE 29 L VAL 30 n 30 VAL 30 L HIS 31 n 31 HIS 31 L THR 32 n 32 THR 32 L ASN 33 n 33 ASN 33 L GLY 34 n 34 GLY 34 L ASN 35 n 35 ASN 35 L THR 36 n 36 THR 36 L TYR 37 n 37 TYR 37 L PHE 38 n 38 PHE 38 L GLU 39 n 39 GLU 39 L TRP 40 n 40 TRP 40 L TYR 41 n 41 TYR 41 L LEU 42 n 42 LEU 42 L GLN 43 n 43 GLN 43 L LYS 44 n 44 LYS 44 L PRO 45 n 45 PRO 45 L GLY 46 n 46 GLY 46 L GLN 47 n 47 GLN 47 L SER 48 n 48 SER 48 L PRO 49 n 49 PRO 49 L HIS 50 n 50 HIS 50 L LEU 51 n 51 LEU 51 L LEU 52 n 52 LEU 52 L ILE 53 n 53 ILE 53 L TYR 54 n 54 TYR 54 L LYS 55 n 55 LYS 55 L VAL 56 n 56 VAL 56 L SER 57 n 57 SER 57 L ASN 58 n 58 ASN 58 L ARG 59 n 59 ARG 59 L LEU 60 n 60 LEU 60 L SER 61 n 61 SER 61 L GLY 62 n 62 GLY 62 L VAL 63 n 63 VAL 63 L PRO 64 n 64 PRO 64 L ASP 65 n 65 ASP 65 L ARG 66 n 66 ARG 66 L PHE 67 n 67 PHE 67 L SER 68 n 68 SER 68 L GLY 69 n 69 GLY 69 L SER 70 n 70 SER 70 L GLY 71 n 71 GLY 71 L SER 72 n 72 SER 72 L GLY 73 n 73 GLY 73 L THR 74 n 74 THR 74 L ASP 75 n 75 ASP 75 L PHE 76 n 76 PHE 76 L THR 77 n 77 THR 77 L LEU 78 n 78 LEU 78 L LYS 79 n 79 LYS 79 L ILE 80 n 80 ILE 80 L SER 81 n 81 SER 81 L ARG 82 n 82 ARG 82 L VAL 83 n 83 VAL 83 L GLU 84 n 84 GLU 84 L ALA 85 n 85 ALA 85 L GLU 86 n 86 GLU 86 L ASP 87 n 87 ASP 87 L LEU 88 n 88 LEU 88 L GLY 89 n 89 GLY 89 L LEU 90 n 90 LEU 90 L TYR 91 n 91 TYR 91 L TYR 92 n 92 TYR 92 L CYS 93 n 93 CYS 93 L PHE 94 n 94 PHE 94 L GLN 95 n 95 GLN 95 L GLY 96 n 96 GLY 96 L SER 97 n 97 SER 97 L HIS 98 n 98 HIS 98 L SER 99 n 99 SER 99 L PRO 100 n 100 PRO 100 L TRP 101 n 101 TRP 101 L THR 102 n 102 THR 102 L PHE 103 n 103 PHE 103 L GLY 104 n 104 GLY 104 L GLY 105 n 105 GLY 105 L GLY 106 n 106 GLY 106 L THR 107 n 107 THR 107 L LYS 108 n 108 LYS 108 L LEU 109 n 109 LEU 109 L GLU 110 n 110 GLU 110 L LEU 111 n 111 LEU 111 L LYS 112 n 112 LYS 112 L ARG 113 n 113 ARG 113 L ALA 114 n 114 ALA 114 L ASP 115 n 115 ASP 115 L ALA 116 n 116 ALA 116 L ALA 117 n 117 ALA 117 L PRO 118 n 118 PRO 118 L THR 119 n 119 THR 119 L VAL 120 n 120 VAL 120 L SER 121 n 121 SER 121 L ILE 122 n 122 ILE 122 L PHE 123 n 123 PHE 123 L PRO 124 n 124 PRO 124 L PRO 125 n 125 PRO 125 L SER 126 n 126 SER 126 L SER 127 n 127 SER 127 L GLU 128 n 128 GLU 128 L GLN 129 n 129 GLN 129 L LEU 130 n 130 LEU 130 L THR 131 n 131 THR 131 L SER 132 n 132 SER 132 L GLY 133 n 133 GLY 133 L GLY 134 n 134 GLY 134 L ALA 135 n 135 ALA 135 L SER 136 n 136 SER 136 L VAL 137 n 137 VAL 137 L VAL 138 n 138 VAL 138 L CYS 139 n 139 CYS 139 L PHE 140 n 140 PHE 140 L LEU 141 n 141 LEU 141 L ASN 142 n 142 ASN 142 L ASN 143 n 143 ASN 143 L PHE 144 n 144 PHE 144 L TYR 145 n 145 TYR 145 L PRO 146 n 146 PRO 146 L LYS 147 n 147 LYS 147 L ASP 148 n 148 ASP 148 L ILE 149 n 149 ILE 149 L ASN 150 n 150 ASN 150 L VAL 151 n 151 VAL 151 L LYS 152 n 152 LYS 152 L TRP 153 n 153 TRP 153 L LYS 154 n 154 LYS 154 L ILE 155 n 155 ILE 155 L ASP 156 n 156 ASP 156 L GLY 157 n 157 GLY 157 L SER 158 n 158 SER 158 L GLU 159 n 159 GLU 159 L ARG 160 n 160 ARG 160 L GLN 161 n 161 GLN 161 L ASN 162 n 162 ASN 162 L GLY 163 n 163 GLY 163 L VAL 164 n 164 VAL 164 L LEU 165 n 165 LEU 165 L ASN 166 n 166 ASN 166 L SER 167 n 167 SER 167 L TRP 168 n 168 TRP 168 L THR 169 n 169 THR 169 L ASP 170 n 170 ASP 170 L GLN 171 n 171 GLN 171 L ASP 172 n 172 ASP 172 L SER 173 n 173 SER 173 L LYS 174 n 174 LYS 174 L ASP 175 n 175 ASP 175 L SER 176 n 176 SER 176 L THR 177 n 177 THR 177 L TYR 178 n 178 TYR 178 L SER 179 n 179 SER 179 L MET 180 n 180 MET 180 L SER 181 n 181 SER 181 L SER 182 n 182 SER 182 L THR 183 n 183 THR 183 L LEU 184 n 184 LEU 184 L THR 185 n 185 THR 185 L LEU 186 n 186 LEU 186 L THR 187 n 187 THR 187 L LYS 188 n 188 LYS 188 L ASP 189 n 189 ASP 189 L GLU 190 n 190 GLU 190 L TYR 191 n 191 TYR 191 L GLU 192 n 192 GLU 192 L ARG 193 n 193 ARG 193 L HIS 194 n 194 HIS 194 L ASN 195 n 195 ASN 195 L SER 196 n 196 SER 196 L TYR 197 n 197 TYR 197 L THR 198 n 198 THR 198 L CYS 199 n 199 CYS 199 L GLU 200 n 200 GLU 200 L ALA 201 n 201 ALA 201 L THR 202 n 202 THR 202 L HIS 203 n 203 HIS 203 L LYS 204 n 204 LYS 204 L THR 205 n 205 THR 205 L SER 206 n 206 SER 206 L THR 207 n 207 THR 207 L SER 208 n 208 SER 208 L PRO 209 n 209 PRO 209 L ILE 210 n 210 ILE 210 L VAL 211 n 211 VAL 211 L LYS 212 n 212 LYS 212 L SER 213 n 213 SER 213 L PHE 214 n 214 PHE 214 L ASN 215 n 215 ASN 215 L ARG 216 n 216 ARG 216 L ASN 217 n 217 ASN 217 L GLU 1 n 1 GLU 1 H LEU 2 n 2 LEU 2 H LYS 3 n 3 LYS 3 H LEU 4 n 4 LEU 4 H VAL 5 n 5 VAL 5 H GLU 6 n 6 GLU 6 H THR 7 n 7 THR 7 H GLY 8 n 8 GLY 8 H GLY 9 n 9 GLY 9 H ASP 10 n 10 ASP 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H GLY 15 n 15 GLY 15 H GLY 16 n 16 GLY 16 H SER 17 n 17 SER 17 H LEU 18 n 18 LEU 18 H THR 19 n 19 THR 19 H LEU 20 n 20 LEU 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H GLU 23 n 23 GLU 23 H ALA 24 n 24 ALA 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H THR 28 n 28 THR 28 H LEU 29 n 29 LEU 29 H ARG 30 n 30 ARG 30 H THR 31 n 31 THR 31 H TYR 32 n 32 TYR 32 H GLY 33 n 33 GLY 33 H MET 34 n 34 MET 34 H SER 35 n 35 SER 35 H TRP 36 n 36 TRP 36 H VAL 37 n 37 VAL 37 H ARG 38 n 38 ARG 38 H GLN 39 n 39 GLN 39 H THR 40 n 40 THR 40 H PRO 41 n 41 PRO 41 H GLN 42 n 42 GLN 42 H MET 43 n 43 MET 43 H ARG 44 n 44 ARG 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H VAL 48 n 48 VAL 48 H ALA 49 n 49 ALA 49 H SER 50 n 50 SER 50 H ILE 51 n 51 ILE 51 H SER 52 n 52 SER 52 H TYR 53 n 53 TYR 53 H GLY 54 n 54 GLY 54 H GLY 55 n 55 GLY 55 H LEU 56 n 56 LEU 56 H LEU 57 n 57 LEU 57 H TYR 58 n 58 TYR 58 H PHE 59 n 59 PHE 59 H SER 60 n 60 SER 60 H ASP 61 n 61 ASP 61 H SER 62 n 62 SER 62 H VAL 63 n 63 VAL 63 H LYS 64 n 64 LYS 64 H GLY 65 n 65 GLY 65 H ARG 66 n 66 ARG 66 H PHE 67 n 67 PHE 67 H THR 68 n 68 THR 68 H ILE 69 n 69 ILE 69 H SER 70 n 70 SER 70 H ARG 71 n 71 ARG 71 H ASP 72 n 72 ASP 72 H ILE 73 n 73 ILE 73 H VAL 74 n 74 VAL 74 H ARG 75 n 75 ARG 75 H ASN 76 n 76 ASN 76 H ILE 77 n 77 ILE 77 H LEU 78 n 78 LEU 78 H THR 79 n 79 THR 79 H LEU 80 n 80 LEU 80 H GLN 81 n 81 GLN 81 H MET 82 n 82 MET 82 H SER 83 n 83 SER 83 H ARG 84 n 84 ARG 84 H LEU 85 n 85 LEU 85 H ARG 86 n 86 ARG 86 H SER 87 n 87 SER 87 H GLU 88 n 88 GLU 88 H ASP 89 n 89 ASP 89 H THR 90 n 90 THR 90 H ALA 91 n 91 ALA 91 H ILE 92 n 92 ILE 92 H TYR 93 n 93 TYR 93 H TYR 94 n 94 TYR 94 H CYS 95 n 95 CYS 95 H ALA 96 n 96 ALA 96 H ARG 97 n 97 ARG 97 H GLY 98 n 98 GLY 98 H THR 99 n 99 THR 99 H SER 100 n 100 SER 100 H PHE 101 n 101 PHE 101 H VAL 102 n 102 VAL 102 H ARG 103 n 103 ARG 103 H TYR 104 n 104 TYR 104 H PHE 105 n 105 PHE 105 H ASP 106 n 106 ASP 106 H VAL 107 n 107 VAL 107 H TRP 108 n 108 TRP 108 H GLY 109 n 109 GLY 109 H ALA 110 n 110 ALA 110 H GLY 111 n 111 GLY 111 H THR 112 n 112 THR 112 H THR 113 n 113 THR 113 H VAL 114 n 114 VAL 114 H THR 115 n 115 THR 115 H VAL 116 n 116 VAL 116 H SER 117 n 117 SER 117 H SER 118 n 118 SER 118 H ALA 119 n 119 ALA 119 H LYS 120 n 120 LYS 120 H THR 121 n 121 THR 121 H THR 122 n 122 THR 122 H ALA 123 n 123 ALA 123 H PRO 124 n 124 PRO 124 H SER 125 n 125 SER 125 H VAL 126 n 126 VAL 126 H TYR 127 n 127 TYR 127 H PRO 128 n 128 PRO 128 H LEU 129 n 129 LEU 129 H ALA 130 n 130 ALA 130 H PRO 131 n 131 PRO 131 H VAL 132 n 132 VAL 132 H CYS 133 n 133 CYS 133 H GLY 134 n 134 GLY 134 H ASP 135 n 135 ASP 135 H THR 136 n 136 THR 136 H THR 137 n 137 THR 137 H GLY 138 n 138 GLY 138 H SER 139 n 139 SER 139 H SER 140 n 140 SER 140 H VAL 141 n 141 VAL 141 H THR 142 n 142 THR 142 H LEU 143 n 143 LEU 143 H GLY 144 n 144 GLY 144 H CYS 145 n 145 CYS 145 H LEU 146 n 146 LEU 146 H VAL 147 n 147 VAL 147 H LYS 148 n 148 LYS 148 H GLY 149 n 149 GLY 149 H TYR 150 n 150 TYR 150 H PHE 151 n 151 PHE 151 H PRO 152 n 152 PRO 152 H GLU 153 n 153 GLU 153 H PRO 154 n 154 PRO 154 H VAL 155 n 155 VAL 155 H THR 156 n 156 THR 156 H LEU 157 n 157 LEU 157 H THR 158 n 158 THR 158 H TRP 159 n 159 TRP 159 H ASN 160 n 160 ASN 160 H SER 161 n 161 SER 161 H GLY 162 n 162 GLY 162 H SER 163 n 163 SER 163 H LEU 164 n 164 LEU 164 H SER 165 n 165 SER 165 H SER 166 n 166 SER 166 H GLY 167 n 167 GLY 167 H VAL 168 n 168 VAL 168 H HIS 169 n 169 HIS 169 H THR 170 n 170 THR 170 H PHE 171 n 171 PHE 171 H PRO 172 n 172 PRO 172 H ALA 173 n 173 ALA 173 H VAL 174 n 174 VAL 174 H LEU 175 n 175 LEU 175 H GLN 176 n 176 GLN 176 H SER 177 n 177 SER 177 H ASP 178 n 178 ASP 178 H LEU 179 n 179 LEU 179 H TYR 180 n 180 TYR 180 H THR 181 n 181 THR 181 H LEU 182 n 182 LEU 182 H SER 183 n 183 SER 183 H SER 184 n 184 SER 184 H SER 185 n 185 SER 185 H VAL 186 n 186 VAL 186 H THR 187 n 187 THR 187 H VAL 188 n 188 VAL 188 H THR 189 n 189 THR 189 H SER 190 n 190 SER 190 H SER 191 n 191 SER 191 H THR 192 n 192 THR 192 H TRP 193 n 193 TRP 193 H PRO 194 n 194 PRO 194 H SER 195 n 195 SER 195 H GLN 196 n 196 GLN 196 H SER 197 n 197 SER 197 H ILE 198 n 198 ILE 198 H THR 199 n 199 THR 199 H CYS 200 n 200 CYS 200 H ASN 201 n 201 ASN 201 H VAL 202 n 202 VAL 202 H ALA 203 n 203 ALA 203 H HIS 204 n 204 HIS 204 H PRO 205 n 205 PRO 205 H ALA 206 n 206 ALA 206 H SER 207 n 207 SER 207 H SER 208 n 208 SER 208 H THR 209 n 209 THR 209 H GLN 210 n 210 GLN 210 H VAL 211 n 211 VAL 211 H ASP 212 n 212 ASP 212 H LYS 213 n 213 LYS 213 H LYS 214 n 214 LYS 214 H ILE 215 n 215 ILE 215 H VAL 216 n 216 VAL 216 H PRO 217 n 217 PRO 217 H ARG 218 n 218 ARG 218 H ALA 219 n 219 ALA 219 H ALA 220 n 220 ALA 220 H 4.1341 2.7516 -1.7311 3.3573 -1.0216 3.4098 0.1622 0.3579 0.1974 0.2748 0.1686 0.3046 -0.3744 -0.2862 -0.3308 0.0687 0.0856 0.0439 0.1126 0.0363 0.0860 refined 79.2355 -44.4279 -60.5643 X-RAY DIFFRACTION 2.2495 1.4391 0.1137 3.7050 0.4418 2.3294 -0.0702 0.1265 -0.1038 -0.3281 0.0609 -0.2262 0.1819 0.0576 0.0093 0.1446 0.0337 0.0070 0.0971 0.0210 0.0832 refined 96.8031 -51.1445 -89.5422 X-RAY DIFFRACTION L 1 A 1 L 112 A 112 X-RAY DIFFRACTION 1 H 1 B 1 H 119 B 119 X-RAY DIFFRACTION 1 L 113 A 113 L 217 A 217 X-RAY DIFFRACTION 2 H 120 B 120 H 220 B 220 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 2 dimeric 3810 -25 19650 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L N THR 5 A N THR 5 L O ARG 24 A O ARG 24 L N CYS 23 A N CYS 23 L O PHE 76 A O PHE 76 L O LYS 79 A O LYS 79 L N SER 68 A N SER 68 L N LEU 11 A N LEU 11 L O LYS 108 A O LYS 108 L O THR 107 A O THR 107 L N TYR 91 A N TYR 91 L O TYR 92 A O TYR 92 L N TYR 41 A N TYR 41 L N TRP 40 A N TRP 40 L O LEU 52 A O LEU 52 L N TYR 54 A N TYR 54 L O ASN 58 A O ASN 58 L N LEU 11 A N LEU 11 L O LYS 108 A O LYS 108 L O THR 107 A O THR 107 L N TYR 91 A N TYR 91 L N GLN 95 A N GLN 95 L O THR 102 A O THR 102 L N PHE 123 A N PHE 123 L O VAL 138 A O VAL 138 L N PHE 144 A N PHE 144 L O TYR 178 A O TYR 178 L O THR 183 A O THR 183 L N LEU 165 A N LEU 165 L O SER 158 A O SER 158 L N ILE 155 A N ILE 155 L N LYS 152 A N LYS 152 L O GLU 200 A O GLU 200 L N CYS 199 A N CYS 199 L O LYS 212 A O LYS 212 H N THR 7 B N THR 7 H O SER 21 B O SER 21 H N LEU 18 B N LEU 18 H O MET 82 B O MET 82 H O THR 79 B O THR 79 H N SER 70 B N SER 70 H O TYR 58 B O TYR 58 H N SER 50 B N SER 50 H O GLU 46 B O GLU 46 H N ARG 38 B N ARG 38 H N VAL 37 B N VAL 37 H O TYR 94 B O TYR 94 H N ARG 97 B N ARG 97 H O ASP 106 B O ASP 106 H O TYR 58 B O TYR 58 H N SER 50 B N SER 50 H O GLU 46 B O GLU 46 H N ARG 38 B N ARG 38 H N VAL 37 B N VAL 37 H O TYR 94 B O TYR 94 H N TYR 93 B N TYR 93 H O THR 112 B O THR 112 H O THR 115 B O THR 115 H N VAL 12 B N VAL 12 H N TYR 127 B N TYR 127 H O LEU 146 B O LEU 146 H N TYR 150 B N TYR 150 H O TYR 180 B O TYR 180 H O SER 185 B O SER 185 H N HIS 169 B N HIS 169 H N TYR 127 B N TYR 127 H O LEU 146 B O LEU 146 H N TYR 150 B N TYR 150 H O TYR 180 B O TYR 180 H O THR 181 B O THR 181 H N VAL 174 B N VAL 174 H N THR 158 B N THR 158 H O ASN 201 B O ASN 201 H N CYS 200 B N CYS 200 H O LYS 213 B O LYS 213 1 L L CD1 OE1 LEU GLN 88 171 2.11 1 L L THR PRO 7 8 -44.99 1 7.65 0.90 118.30 125.95 L L L CB CG OD2 ASP ASP ASP 65 65 65 N 1 -13.93 2.30 115.30 101.37 L L L CA CB CG LEU LEU LEU 111 111 111 N 1 6.52 0.90 118.30 124.82 L L L CB CG OD2 ASP ASP ASP 115 115 115 N 1 5.83 0.90 118.30 124.13 L L L CB CG OD2 ASP ASP ASP 189 189 189 N 1 5.92 0.90 118.30 124.22 H H H CB CG OD1 ASP ASP ASP 10 10 10 N 1 6.18 0.90 118.30 124.48 H H H CB CG OD2 ASP ASP ASP 61 61 61 N 1 5.60 0.90 118.30 123.90 H H H CB CG OD2 ASP ASP ASP 89 89 89 N 1 7.51 0.90 118.30 125.81 H H H CB CG OD2 ASP ASP ASP 212 212 212 N 1 L ASP 17 -69.10 -176.97 1 L ILE 29 -146.07 52.84 1 L LEU 52 -120.13 -62.15 1 L LYS 55 38.92 60.42 1 L VAL 56 67.45 -52.70 1 L ARG 82 55.40 73.57 1 L ASN 143 61.92 62.74 1 L ARG 216 -52.08 -3.69 1 H ARG 30 -25.97 -63.96 1 H ASN 76 71.96 48.93 1 H ALA 91 179.53 164.82 1 H SER 100 -31.58 137.81 1 H PHE 101 49.66 8.42 1 H CYS 133 164.26 -36.19 1 H ASP 135 -77.51 35.31 1 H THR 136 -159.71 -1.40 1 H ARG 218 -93.71 -147.67 1 H ALA 219 67.62 117.07 26.887 3.18 0.00 0.00 -0.74 0.00 -2.44 0.920 0.865 0.3079 0.23532 0.2391 0.23917 2.40 38.35 1053 18630 18630 5.3 100.00 9.885 9.885 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.466 0.320 0.80 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.40 38.35 19 3371 0 0 3352 0.018 0.021 3435 1.906 1.948 4681 7.934 3.000 435 21.844 15.000 597 0.164 0.200 537 0.003 0.020 2575 0.286 0.300 1532 0.150 0.500 353 0.341 0.300 53 0.270 0.500 1 2.728 1.500 2173 4.008 2.000 3531 5.465 2.500 1262 6.680 3.000 1150 0.391 0.269 2.462 68 1352 20 45 2.40 40 1LO4 19718 0 0.027 1 30.2 99 0.116 2.40 2.53 10.6 98.3 refinement REFMAC 5.0 data scaling SCALA refinement CNS data reduction MOSFLM data scaling CCP4 (SCALA) phasing CNS If kappa light chain, Ig gamma 2a heavy chain Retro-Diels-Alderase Catalytic antibody 9D9 1 N N 2 N N 3 N N 3 N N L GLU 84 A GLU 84 HELX_P L LEU 88 A LEU 88 5 1 5 L SER 126 A SER 126 HELX_P L SER 132 A SER 132 1 2 7 L LYS 188 A LYS 188 HELX_P L GLU 192 A GLU 192 1 3 5 H ARG 86 B ARG 86 HELX_P H THR 90 B THR 90 5 4 5 H SER 161 B SER 161 HELX_P H SER 163 B SER 163 5 5 3 H PRO 205 B PRO 205 HELX_P H SER 208 B SER 208 5 6 4 disulf 2.045 L CYS 23 A SG CYS 23 1_555 L CYS 93 A SG CYS 93 1_555 disulf 2.080 L CYS 139 A SG CYS 139 1_555 L CYS 199 A SG CYS 199 1_555 disulf 2.039 H CYS 22 B SG CYS 22 1_555 H CYS 95 B SG CYS 95 1_555 disulf 2.044 H CYS 145 B SG CYS 145 1_555 H CYS 200 B SG CYS 200 1_555 IMMUNE SYSTEM Fab, catalytic antibody, retro-Deils-Alderase, IMMUNE SYSTEM L SER 99 A SER 99 1 L PRO 100 A PRO 100 -7.06 L TYR 145 A TYR 145 1 L PRO 146 A PRO 146 -0.26 H PHE 151 B PHE 151 1 H PRO 152 B PRO 152 -6.11 H GLU 153 B GLU 153 1 H PRO 154 B PRO 154 -3.50 H TRP 193 B TRP 193 1 H PRO 194 B PRO 194 3.96 Q99M37 UNP 1 24 Q99M37 1LO4 PDB 2 1LO4 24 236 1LO4 5 217 Q99M37 L 1 5 217 1 220 1LO4 1 220 1LO4 H 2 1 220 4 6 4 4 4 4 5 6 4 4 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L LEU 4 A LEU 4 L THR 7 A THR 7 L ALA 19 A ALA 19 L SER 25 A SER 25 L ASP 75 A ASP 75 L ILE 80 A ILE 80 L PHE 67 A PHE 67 L SER 72 A SER 72 L SER 10 A SER 10 L SER 14 A SER 14 L THR 107 A THR 107 L LYS 112 A LYS 112 L GLY 89 A GLY 89 L GLN 95 A GLN 95 L PHE 38 A PHE 38 L GLN 43 A GLN 43 L PRO 49 A PRO 49 L TYR 54 A TYR 54 L ASN 58 A ASN 58 L ARG 59 A ARG 59 L SER 10 A SER 10 L SER 14 A SER 14 L THR 107 A THR 107 L LYS 112 A LYS 112 L GLY 89 A GLY 89 L GLN 95 A GLN 95 L THR 102 A THR 102 L PHE 103 A PHE 103 L THR 119 A THR 119 L PHE 123 A PHE 123 L GLY 134 A GLY 134 L PHE 144 A PHE 144 L TYR 178 A TYR 178 L THR 187 A THR 187 L VAL 164 A VAL 164 L TRP 168 A TRP 168 L SER 158 A SER 158 L ARG 160 A ARG 160 L ASN 150 A ASN 150 L ILE 155 A ILE 155 L SER 196 A SER 196 L THR 202 A THR 202 L ILE 210 A ILE 210 L ASN 215 A ASN 215 H LYS 3 B LYS 3 H THR 7 B THR 7 H LEU 18 B LEU 18 H SER 25 B SER 25 H ILE 77 B ILE 77 H MET 82 B MET 82 H THR 68 B THR 68 H ASP 72 B ASP 72 H LEU 57 B LEU 57 H PHE 59 B PHE 59 H LEU 45 B LEU 45 H ILE 51 B ILE 51 H GLY 33 B GLY 33 H GLN 39 B GLN 39 H ALA 91 B ALA 91 H THR 99 B THR 99 H ARG 103 B ARG 103 H TRP 108 B TRP 108 H LEU 57 B LEU 57 H PHE 59 B PHE 59 H LEU 45 B LEU 45 H ILE 51 B ILE 51 H GLY 33 B GLY 33 H GLN 39 B GLN 39 H ALA 91 B ALA 91 H THR 99 B THR 99 H THR 112 B THR 112 H VAL 116 B VAL 116 H LEU 11 B LEU 11 H VAL 12 B VAL 12 H SER 125 B SER 125 H LEU 129 B LEU 129 H SER 140 B SER 140 H TYR 150 B TYR 150 H LEU 179 B LEU 179 H THR 189 B THR 189 H VAL 168 B VAL 168 H THR 170 B THR 170 H SER 125 B SER 125 H LEU 129 B LEU 129 H SER 140 B SER 140 H TYR 150 B TYR 150 H LEU 179 B LEU 179 H THR 189 B THR 189 H VAL 174 B VAL 174 H GLN 176 B GLN 176 H THR 156 B THR 156 H TRP 159 B TRP 159 H THR 199 B THR 199 H HIS 204 B HIS 204 H THR 209 B THR 209 H LYS 214 B LYS 214 19 P 21 21 21