0.020533
0.000000
0.000000
0.000000
0.012445
0.000000
0.000000
0.000000
0.007993
0.00000
0.00000
0.00000
Hugot, M.
Reymond, J.L.
Baumann, U.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
48.703
80.355
125.103
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
99
9674
9678
10.1073/pnas.142286599
12093912
A structural basis for the activity of retro-Diels-Alder catalytic antibodies: evidence for a catalytic aromatic residue.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
Yale mirrors
IMAGE PLATE
1999-10-10
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
23994.537
If kappa light chain
Fab fragment
1
nat
polymer
23656.791
Ig gamma 2a heavy chain
1
nat
polymer
18.015
water
19
nat
water
Catalytic antibody 9D9
no
no
DVLLTQTPLSLPVSLGDQASISCRSSQTIVHTNGNTYFEWYLQKPGQSPHLLIYKVSNRLSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGLYYCFQGSHSPWTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
DVLLTQTPLSLPVSLGDQASISCRSSQTIVHTNGNTYFEWYLQKPGQSPHLLIYKVSNRLSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGLYYCFQGSHSPWTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
L
polypeptide(L)
no
no
ELKLVETGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTL
QMSRLRSEDTAIYYCARGTSFVRYFDVWGAGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN
SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTQVDKKIVPRAA
ELKLVETGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTL
QMSRLRSEDTAIYYCARGTSFVRYFDVWGAGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN
SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTQVDKKIVPRAA
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
The antibodies were isolated from hybridoma cells and Fab fragments were generated by papain digestion.
Mus
sample
10090
Mus musculus
house mouse
The antibodies were isolated from hybridoma cells and Fab fragments were generated by papain digestion.
Mus
sample
10090
Mus musculus
1
2.57
52.09
VAPOR DIFFUSION, HANGING DROP
7.8
PEG4000, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
software
repository
Initial release
Version format compliance
Version format compliance
Data collection
Refinement description
1
0
2002-07-03
1
1
2008-04-28
1
2
2011-07-13
1
3
2019-07-24
_software.classification
_software.name
_software.version
Catalytic Retro-Diels-Alderase Transition State Analogue Complex
Retro-Diels-Alderase Catalytic Antibody
Retro-Diels-Alderase Catalytic Antibody
At the time of processing, this sequence has not yet
been deposited in a sequence database.
RCSB
Y
RCSB
2002-05-06
REL
HOH
water
HOH
3
3
HOH
HOH
218
L
HOH
4
3
HOH
HOH
219
L
HOH
5
3
HOH
HOH
220
L
HOH
6
3
HOH
HOH
221
L
HOH
7
3
HOH
HOH
222
L
HOH
8
3
HOH
HOH
223
L
HOH
10
3
HOH
HOH
224
L
HOH
13
3
HOH
HOH
225
L
HOH
14
3
HOH
HOH
226
L
HOH
16
3
HOH
HOH
227
L
HOH
19
3
HOH
HOH
228
L
HOH
1
3
HOH
HOH
221
H
HOH
2
3
HOH
HOH
222
H
HOH
9
3
HOH
HOH
223
H
HOH
11
3
HOH
HOH
224
H
HOH
12
3
HOH
HOH
225
H
HOH
15
3
HOH
HOH
226
H
HOH
17
3
HOH
HOH
227
H
HOH
18
3
HOH
HOH
228
H
ASP
1
n
1
ASP
1
L
VAL
2
n
2
VAL
2
L
LEU
3
n
3
LEU
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
THR
7
n
7
THR
7
L
PRO
8
n
8
PRO
8
L
LEU
9
n
9
LEU
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
PRO
12
n
12
PRO
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
ASP
17
n
17
ASP
17
L
GLN
18
n
18
GLN
18
L
ALA
19
n
19
ALA
19
L
SER
20
n
20
SER
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
THR
28
n
28
THR
28
L
ILE
29
n
29
ILE
29
L
VAL
30
n
30
VAL
30
L
HIS
31
n
31
HIS
31
L
THR
32
n
32
THR
32
L
ASN
33
n
33
ASN
33
L
GLY
34
n
34
GLY
34
L
ASN
35
n
35
ASN
35
L
THR
36
n
36
THR
36
L
TYR
37
n
37
TYR
37
L
PHE
38
n
38
PHE
38
L
GLU
39
n
39
GLU
39
L
TRP
40
n
40
TRP
40
L
TYR
41
n
41
TYR
41
L
LEU
42
n
42
LEU
42
L
GLN
43
n
43
GLN
43
L
LYS
44
n
44
LYS
44
L
PRO
45
n
45
PRO
45
L
GLY
46
n
46
GLY
46
L
GLN
47
n
47
GLN
47
L
SER
48
n
48
SER
48
L
PRO
49
n
49
PRO
49
L
HIS
50
n
50
HIS
50
L
LEU
51
n
51
LEU
51
L
LEU
52
n
52
LEU
52
L
ILE
53
n
53
ILE
53
L
TYR
54
n
54
TYR
54
L
LYS
55
n
55
LYS
55
L
VAL
56
n
56
VAL
56
L
SER
57
n
57
SER
57
L
ASN
58
n
58
ASN
58
L
ARG
59
n
59
ARG
59
L
LEU
60
n
60
LEU
60
L
SER
61
n
61
SER
61
L
GLY
62
n
62
GLY
62
L
VAL
63
n
63
VAL
63
L
PRO
64
n
64
PRO
64
L
ASP
65
n
65
ASP
65
L
ARG
66
n
66
ARG
66
L
PHE
67
n
67
PHE
67
L
SER
68
n
68
SER
68
L
GLY
69
n
69
GLY
69
L
SER
70
n
70
SER
70
L
GLY
71
n
71
GLY
71
L
SER
72
n
72
SER
72
L
GLY
73
n
73
GLY
73
L
THR
74
n
74
THR
74
L
ASP
75
n
75
ASP
75
L
PHE
76
n
76
PHE
76
L
THR
77
n
77
THR
77
L
LEU
78
n
78
LEU
78
L
LYS
79
n
79
LYS
79
L
ILE
80
n
80
ILE
80
L
SER
81
n
81
SER
81
L
ARG
82
n
82
ARG
82
L
VAL
83
n
83
VAL
83
L
GLU
84
n
84
GLU
84
L
ALA
85
n
85
ALA
85
L
GLU
86
n
86
GLU
86
L
ASP
87
n
87
ASP
87
L
LEU
88
n
88
LEU
88
L
GLY
89
n
89
GLY
89
L
LEU
90
n
90
LEU
90
L
TYR
91
n
91
TYR
91
L
TYR
92
n
92
TYR
92
L
CYS
93
n
93
CYS
93
L
PHE
94
n
94
PHE
94
L
GLN
95
n
95
GLN
95
L
GLY
96
n
96
GLY
96
L
SER
97
n
97
SER
97
L
HIS
98
n
98
HIS
98
L
SER
99
n
99
SER
99
L
PRO
100
n
100
PRO
100
L
TRP
101
n
101
TRP
101
L
THR
102
n
102
THR
102
L
PHE
103
n
103
PHE
103
L
GLY
104
n
104
GLY
104
L
GLY
105
n
105
GLY
105
L
GLY
106
n
106
GLY
106
L
THR
107
n
107
THR
107
L
LYS
108
n
108
LYS
108
L
LEU
109
n
109
LEU
109
L
GLU
110
n
110
GLU
110
L
LEU
111
n
111
LEU
111
L
LYS
112
n
112
LYS
112
L
ARG
113
n
113
ARG
113
L
ALA
114
n
114
ALA
114
L
ASP
115
n
115
ASP
115
L
ALA
116
n
116
ALA
116
L
ALA
117
n
117
ALA
117
L
PRO
118
n
118
PRO
118
L
THR
119
n
119
THR
119
L
VAL
120
n
120
VAL
120
L
SER
121
n
121
SER
121
L
ILE
122
n
122
ILE
122
L
PHE
123
n
123
PHE
123
L
PRO
124
n
124
PRO
124
L
PRO
125
n
125
PRO
125
L
SER
126
n
126
SER
126
L
SER
127
n
127
SER
127
L
GLU
128
n
128
GLU
128
L
GLN
129
n
129
GLN
129
L
LEU
130
n
130
LEU
130
L
THR
131
n
131
THR
131
L
SER
132
n
132
SER
132
L
GLY
133
n
133
GLY
133
L
GLY
134
n
134
GLY
134
L
ALA
135
n
135
ALA
135
L
SER
136
n
136
SER
136
L
VAL
137
n
137
VAL
137
L
VAL
138
n
138
VAL
138
L
CYS
139
n
139
CYS
139
L
PHE
140
n
140
PHE
140
L
LEU
141
n
141
LEU
141
L
ASN
142
n
142
ASN
142
L
ASN
143
n
143
ASN
143
L
PHE
144
n
144
PHE
144
L
TYR
145
n
145
TYR
145
L
PRO
146
n
146
PRO
146
L
LYS
147
n
147
LYS
147
L
ASP
148
n
148
ASP
148
L
ILE
149
n
149
ILE
149
L
ASN
150
n
150
ASN
150
L
VAL
151
n
151
VAL
151
L
LYS
152
n
152
LYS
152
L
TRP
153
n
153
TRP
153
L
LYS
154
n
154
LYS
154
L
ILE
155
n
155
ILE
155
L
ASP
156
n
156
ASP
156
L
GLY
157
n
157
GLY
157
L
SER
158
n
158
SER
158
L
GLU
159
n
159
GLU
159
L
ARG
160
n
160
ARG
160
L
GLN
161
n
161
GLN
161
L
ASN
162
n
162
ASN
162
L
GLY
163
n
163
GLY
163
L
VAL
164
n
164
VAL
164
L
LEU
165
n
165
LEU
165
L
ASN
166
n
166
ASN
166
L
SER
167
n
167
SER
167
L
TRP
168
n
168
TRP
168
L
THR
169
n
169
THR
169
L
ASP
170
n
170
ASP
170
L
GLN
171
n
171
GLN
171
L
ASP
172
n
172
ASP
172
L
SER
173
n
173
SER
173
L
LYS
174
n
174
LYS
174
L
ASP
175
n
175
ASP
175
L
SER
176
n
176
SER
176
L
THR
177
n
177
THR
177
L
TYR
178
n
178
TYR
178
L
SER
179
n
179
SER
179
L
MET
180
n
180
MET
180
L
SER
181
n
181
SER
181
L
SER
182
n
182
SER
182
L
THR
183
n
183
THR
183
L
LEU
184
n
184
LEU
184
L
THR
185
n
185
THR
185
L
LEU
186
n
186
LEU
186
L
THR
187
n
187
THR
187
L
LYS
188
n
188
LYS
188
L
ASP
189
n
189
ASP
189
L
GLU
190
n
190
GLU
190
L
TYR
191
n
191
TYR
191
L
GLU
192
n
192
GLU
192
L
ARG
193
n
193
ARG
193
L
HIS
194
n
194
HIS
194
L
ASN
195
n
195
ASN
195
L
SER
196
n
196
SER
196
L
TYR
197
n
197
TYR
197
L
THR
198
n
198
THR
198
L
CYS
199
n
199
CYS
199
L
GLU
200
n
200
GLU
200
L
ALA
201
n
201
ALA
201
L
THR
202
n
202
THR
202
L
HIS
203
n
203
HIS
203
L
LYS
204
n
204
LYS
204
L
THR
205
n
205
THR
205
L
SER
206
n
206
SER
206
L
THR
207
n
207
THR
207
L
SER
208
n
208
SER
208
L
PRO
209
n
209
PRO
209
L
ILE
210
n
210
ILE
210
L
VAL
211
n
211
VAL
211
L
LYS
212
n
212
LYS
212
L
SER
213
n
213
SER
213
L
PHE
214
n
214
PHE
214
L
ASN
215
n
215
ASN
215
L
ARG
216
n
216
ARG
216
L
ASN
217
n
217
ASN
217
L
GLU
1
n
1
GLU
1
H
LEU
2
n
2
LEU
2
H
LYS
3
n
3
LYS
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLU
6
n
6
GLU
6
H
THR
7
n
7
THR
7
H
GLY
8
n
8
GLY
8
H
GLY
9
n
9
GLY
9
H
ASP
10
n
10
ASP
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
GLY
16
n
16
GLY
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
THR
19
n
19
THR
19
H
LEU
20
n
20
LEU
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
GLU
23
n
23
GLU
23
H
ALA
24
n
24
ALA
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
PHE
27
n
27
PHE
27
H
THR
28
n
28
THR
28
H
LEU
29
n
29
LEU
29
H
ARG
30
n
30
ARG
30
H
THR
31
n
31
THR
31
H
TYR
32
n
32
TYR
32
H
GLY
33
n
33
GLY
33
H
MET
34
n
34
MET
34
H
SER
35
n
35
SER
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ARG
38
n
38
ARG
38
H
GLN
39
n
39
GLN
39
H
THR
40
n
40
THR
40
H
PRO
41
n
41
PRO
41
H
GLN
42
n
42
GLN
42
H
MET
43
n
43
MET
43
H
ARG
44
n
44
ARG
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
VAL
48
n
48
VAL
48
H
ALA
49
n
49
ALA
49
H
SER
50
n
50
SER
50
H
ILE
51
n
51
ILE
51
H
SER
52
n
52
SER
52
H
TYR
53
n
53
TYR
53
H
GLY
54
n
54
GLY
54
H
GLY
55
n
55
GLY
55
H
LEU
56
n
56
LEU
56
H
LEU
57
n
57
LEU
57
H
TYR
58
n
58
TYR
58
H
PHE
59
n
59
PHE
59
H
SER
60
n
60
SER
60
H
ASP
61
n
61
ASP
61
H
SER
62
n
62
SER
62
H
VAL
63
n
63
VAL
63
H
LYS
64
n
64
LYS
64
H
GLY
65
n
65
GLY
65
H
ARG
66
n
66
ARG
66
H
PHE
67
n
67
PHE
67
H
THR
68
n
68
THR
68
H
ILE
69
n
69
ILE
69
H
SER
70
n
70
SER
70
H
ARG
71
n
71
ARG
71
H
ASP
72
n
72
ASP
72
H
ILE
73
n
73
ILE
73
H
VAL
74
n
74
VAL
74
H
ARG
75
n
75
ARG
75
H
ASN
76
n
76
ASN
76
H
ILE
77
n
77
ILE
77
H
LEU
78
n
78
LEU
78
H
THR
79
n
79
THR
79
H
LEU
80
n
80
LEU
80
H
GLN
81
n
81
GLN
81
H
MET
82
n
82
MET
82
H
SER
83
n
83
SER
83
H
ARG
84
n
84
ARG
84
H
LEU
85
n
85
LEU
85
H
ARG
86
n
86
ARG
86
H
SER
87
n
87
SER
87
H
GLU
88
n
88
GLU
88
H
ASP
89
n
89
ASP
89
H
THR
90
n
90
THR
90
H
ALA
91
n
91
ALA
91
H
ILE
92
n
92
ILE
92
H
TYR
93
n
93
TYR
93
H
TYR
94
n
94
TYR
94
H
CYS
95
n
95
CYS
95
H
ALA
96
n
96
ALA
96
H
ARG
97
n
97
ARG
97
H
GLY
98
n
98
GLY
98
H
THR
99
n
99
THR
99
H
SER
100
n
100
SER
100
H
PHE
101
n
101
PHE
101
H
VAL
102
n
102
VAL
102
H
ARG
103
n
103
ARG
103
H
TYR
104
n
104
TYR
104
H
PHE
105
n
105
PHE
105
H
ASP
106
n
106
ASP
106
H
VAL
107
n
107
VAL
107
H
TRP
108
n
108
TRP
108
H
GLY
109
n
109
GLY
109
H
ALA
110
n
110
ALA
110
H
GLY
111
n
111
GLY
111
H
THR
112
n
112
THR
112
H
THR
113
n
113
THR
113
H
VAL
114
n
114
VAL
114
H
THR
115
n
115
THR
115
H
VAL
116
n
116
VAL
116
H
SER
117
n
117
SER
117
H
SER
118
n
118
SER
118
H
ALA
119
n
119
ALA
119
H
LYS
120
n
120
LYS
120
H
THR
121
n
121
THR
121
H
THR
122
n
122
THR
122
H
ALA
123
n
123
ALA
123
H
PRO
124
n
124
PRO
124
H
SER
125
n
125
SER
125
H
VAL
126
n
126
VAL
126
H
TYR
127
n
127
TYR
127
H
PRO
128
n
128
PRO
128
H
LEU
129
n
129
LEU
129
H
ALA
130
n
130
ALA
130
H
PRO
131
n
131
PRO
131
H
VAL
132
n
132
VAL
132
H
CYS
133
n
133
CYS
133
H
GLY
134
n
134
GLY
134
H
ASP
135
n
135
ASP
135
H
THR
136
n
136
THR
136
H
THR
137
n
137
THR
137
H
GLY
138
n
138
GLY
138
H
SER
139
n
139
SER
139
H
SER
140
n
140
SER
140
H
VAL
141
n
141
VAL
141
H
THR
142
n
142
THR
142
H
LEU
143
n
143
LEU
143
H
GLY
144
n
144
GLY
144
H
CYS
145
n
145
CYS
145
H
LEU
146
n
146
LEU
146
H
VAL
147
n
147
VAL
147
H
LYS
148
n
148
LYS
148
H
GLY
149
n
149
GLY
149
H
TYR
150
n
150
TYR
150
H
PHE
151
n
151
PHE
151
H
PRO
152
n
152
PRO
152
H
GLU
153
n
153
GLU
153
H
PRO
154
n
154
PRO
154
H
VAL
155
n
155
VAL
155
H
THR
156
n
156
THR
156
H
LEU
157
n
157
LEU
157
H
THR
158
n
158
THR
158
H
TRP
159
n
159
TRP
159
H
ASN
160
n
160
ASN
160
H
SER
161
n
161
SER
161
H
GLY
162
n
162
GLY
162
H
SER
163
n
163
SER
163
H
LEU
164
n
164
LEU
164
H
SER
165
n
165
SER
165
H
SER
166
n
166
SER
166
H
GLY
167
n
167
GLY
167
H
VAL
168
n
168
VAL
168
H
HIS
169
n
169
HIS
169
H
THR
170
n
170
THR
170
H
PHE
171
n
171
PHE
171
H
PRO
172
n
172
PRO
172
H
ALA
173
n
173
ALA
173
H
VAL
174
n
174
VAL
174
H
LEU
175
n
175
LEU
175
H
GLN
176
n
176
GLN
176
H
SER
177
n
177
SER
177
H
ASP
178
n
178
ASP
178
H
LEU
179
n
179
LEU
179
H
TYR
180
n
180
TYR
180
H
THR
181
n
181
THR
181
H
LEU
182
n
182
LEU
182
H
SER
183
n
183
SER
183
H
SER
184
n
184
SER
184
H
SER
185
n
185
SER
185
H
VAL
186
n
186
VAL
186
H
THR
187
n
187
THR
187
H
VAL
188
n
188
VAL
188
H
THR
189
n
189
THR
189
H
SER
190
n
190
SER
190
H
SER
191
n
191
SER
191
H
THR
192
n
192
THR
192
H
TRP
193
n
193
TRP
193
H
PRO
194
n
194
PRO
194
H
SER
195
n
195
SER
195
H
GLN
196
n
196
GLN
196
H
SER
197
n
197
SER
197
H
ILE
198
n
198
ILE
198
H
THR
199
n
199
THR
199
H
CYS
200
n
200
CYS
200
H
ASN
201
n
201
ASN
201
H
VAL
202
n
202
VAL
202
H
ALA
203
n
203
ALA
203
H
HIS
204
n
204
HIS
204
H
PRO
205
n
205
PRO
205
H
ALA
206
n
206
ALA
206
H
SER
207
n
207
SER
207
H
SER
208
n
208
SER
208
H
THR
209
n
209
THR
209
H
GLN
210
n
210
GLN
210
H
VAL
211
n
211
VAL
211
H
ASP
212
n
212
ASP
212
H
LYS
213
n
213
LYS
213
H
LYS
214
n
214
LYS
214
H
ILE
215
n
215
ILE
215
H
VAL
216
n
216
VAL
216
H
PRO
217
n
217
PRO
217
H
ARG
218
n
218
ARG
218
H
ALA
219
n
219
ALA
219
H
ALA
220
n
220
ALA
220
H
4.1341
2.7516
-1.7311
3.3573
-1.0216
3.4098
0.1622
0.3579
0.1974
0.2748
0.1686
0.3046
-0.3744
-0.2862
-0.3308
0.0687
0.0856
0.0439
0.1126
0.0363
0.0860
refined
79.2355
-44.4279
-60.5643
X-RAY DIFFRACTION
2.2495
1.4391
0.1137
3.7050
0.4418
2.3294
-0.0702
0.1265
-0.1038
-0.3281
0.0609
-0.2262
0.1819
0.0576
0.0093
0.1446
0.0337
0.0070
0.0971
0.0210
0.0832
refined
96.8031
-51.1445
-89.5422
X-RAY DIFFRACTION
L
1
A
1
L
112
A
112
X-RAY DIFFRACTION
1
H
1
B
1
H
119
B
119
X-RAY DIFFRACTION
1
L
113
A
113
L
217
A
217
X-RAY DIFFRACTION
2
H
120
B
120
H
220
B
220
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
3810
-25
19650
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
N
THR
5
A
N
THR
5
L
O
ARG
24
A
O
ARG
24
L
N
CYS
23
A
N
CYS
23
L
O
PHE
76
A
O
PHE
76
L
O
LYS
79
A
O
LYS
79
L
N
SER
68
A
N
SER
68
L
N
LEU
11
A
N
LEU
11
L
O
LYS
108
A
O
LYS
108
L
O
THR
107
A
O
THR
107
L
N
TYR
91
A
N
TYR
91
L
O
TYR
92
A
O
TYR
92
L
N
TYR
41
A
N
TYR
41
L
N
TRP
40
A
N
TRP
40
L
O
LEU
52
A
O
LEU
52
L
N
TYR
54
A
N
TYR
54
L
O
ASN
58
A
O
ASN
58
L
N
LEU
11
A
N
LEU
11
L
O
LYS
108
A
O
LYS
108
L
O
THR
107
A
O
THR
107
L
N
TYR
91
A
N
TYR
91
L
N
GLN
95
A
N
GLN
95
L
O
THR
102
A
O
THR
102
L
N
PHE
123
A
N
PHE
123
L
O
VAL
138
A
O
VAL
138
L
N
PHE
144
A
N
PHE
144
L
O
TYR
178
A
O
TYR
178
L
O
THR
183
A
O
THR
183
L
N
LEU
165
A
N
LEU
165
L
O
SER
158
A
O
SER
158
L
N
ILE
155
A
N
ILE
155
L
N
LYS
152
A
N
LYS
152
L
O
GLU
200
A
O
GLU
200
L
N
CYS
199
A
N
CYS
199
L
O
LYS
212
A
O
LYS
212
H
N
THR
7
B
N
THR
7
H
O
SER
21
B
O
SER
21
H
N
LEU
18
B
N
LEU
18
H
O
MET
82
B
O
MET
82
H
O
THR
79
B
O
THR
79
H
N
SER
70
B
N
SER
70
H
O
TYR
58
B
O
TYR
58
H
N
SER
50
B
N
SER
50
H
O
GLU
46
B
O
GLU
46
H
N
ARG
38
B
N
ARG
38
H
N
VAL
37
B
N
VAL
37
H
O
TYR
94
B
O
TYR
94
H
N
ARG
97
B
N
ARG
97
H
O
ASP
106
B
O
ASP
106
H
O
TYR
58
B
O
TYR
58
H
N
SER
50
B
N
SER
50
H
O
GLU
46
B
O
GLU
46
H
N
ARG
38
B
N
ARG
38
H
N
VAL
37
B
N
VAL
37
H
O
TYR
94
B
O
TYR
94
H
N
TYR
93
B
N
TYR
93
H
O
THR
112
B
O
THR
112
H
O
THR
115
B
O
THR
115
H
N
VAL
12
B
N
VAL
12
H
N
TYR
127
B
N
TYR
127
H
O
LEU
146
B
O
LEU
146
H
N
TYR
150
B
N
TYR
150
H
O
TYR
180
B
O
TYR
180
H
O
SER
185
B
O
SER
185
H
N
HIS
169
B
N
HIS
169
H
N
TYR
127
B
N
TYR
127
H
O
LEU
146
B
O
LEU
146
H
N
TYR
150
B
N
TYR
150
H
O
TYR
180
B
O
TYR
180
H
O
THR
181
B
O
THR
181
H
N
VAL
174
B
N
VAL
174
H
N
THR
158
B
N
THR
158
H
O
ASN
201
B
O
ASN
201
H
N
CYS
200
B
N
CYS
200
H
O
LYS
213
B
O
LYS
213
1
L
L
CD1
OE1
LEU
GLN
88
171
2.11
1
L
L
THR
PRO
7
8
-44.99
1
7.65
0.90
118.30
125.95
L
L
L
CB
CG
OD2
ASP
ASP
ASP
65
65
65
N
1
-13.93
2.30
115.30
101.37
L
L
L
CA
CB
CG
LEU
LEU
LEU
111
111
111
N
1
6.52
0.90
118.30
124.82
L
L
L
CB
CG
OD2
ASP
ASP
ASP
115
115
115
N
1
5.83
0.90
118.30
124.13
L
L
L
CB
CG
OD2
ASP
ASP
ASP
189
189
189
N
1
5.92
0.90
118.30
124.22
H
H
H
CB
CG
OD1
ASP
ASP
ASP
10
10
10
N
1
6.18
0.90
118.30
124.48
H
H
H
CB
CG
OD2
ASP
ASP
ASP
61
61
61
N
1
5.60
0.90
118.30
123.90
H
H
H
CB
CG
OD2
ASP
ASP
ASP
89
89
89
N
1
7.51
0.90
118.30
125.81
H
H
H
CB
CG
OD2
ASP
ASP
ASP
212
212
212
N
1
L
ASP
17
-69.10
-176.97
1
L
ILE
29
-146.07
52.84
1
L
LEU
52
-120.13
-62.15
1
L
LYS
55
38.92
60.42
1
L
VAL
56
67.45
-52.70
1
L
ARG
82
55.40
73.57
1
L
ASN
143
61.92
62.74
1
L
ARG
216
-52.08
-3.69
1
H
ARG
30
-25.97
-63.96
1
H
ASN
76
71.96
48.93
1
H
ALA
91
179.53
164.82
1
H
SER
100
-31.58
137.81
1
H
PHE
101
49.66
8.42
1
H
CYS
133
164.26
-36.19
1
H
ASP
135
-77.51
35.31
1
H
THR
136
-159.71
-1.40
1
H
ARG
218
-93.71
-147.67
1
H
ALA
219
67.62
117.07
26.887
3.18
0.00
0.00
-0.74
0.00
-2.44
0.920
0.865
0.3079
0.23532
0.2391
0.23917
2.40
38.35
1053
18630
18630
5.3
100.00
9.885
9.885
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.466
0.320
0.80
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.40
38.35
19
3371
0
0
3352
0.018
0.021
3435
1.906
1.948
4681
7.934
3.000
435
21.844
15.000
597
0.164
0.200
537
0.003
0.020
2575
0.286
0.300
1532
0.150
0.500
353
0.341
0.300
53
0.270
0.500
1
2.728
1.500
2173
4.008
2.000
3531
5.465
2.500
1262
6.680
3.000
1150
0.391
0.269
2.462
68
1352
20
45
2.40
40
1LO4
19718
0
0.027
1
30.2
99
0.116
2.40
2.53
10.6
98.3
refinement
REFMAC
5.0
data scaling
SCALA
refinement
CNS
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
CNS
If kappa light chain, Ig gamma 2a heavy chain
Retro-Diels-Alderase Catalytic antibody 9D9
1
N
N
2
N
N
3
N
N
3
N
N
L
GLU
84
A
GLU
84
HELX_P
L
LEU
88
A
LEU
88
5
1
5
L
SER
126
A
SER
126
HELX_P
L
SER
132
A
SER
132
1
2
7
L
LYS
188
A
LYS
188
HELX_P
L
GLU
192
A
GLU
192
1
3
5
H
ARG
86
B
ARG
86
HELX_P
H
THR
90
B
THR
90
5
4
5
H
SER
161
B
SER
161
HELX_P
H
SER
163
B
SER
163
5
5
3
H
PRO
205
B
PRO
205
HELX_P
H
SER
208
B
SER
208
5
6
4
disulf
2.045
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
93
A
SG
CYS
93
1_555
disulf
2.080
L
CYS
139
A
SG
CYS
139
1_555
L
CYS
199
A
SG
CYS
199
1_555
disulf
2.039
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
95
B
SG
CYS
95
1_555
disulf
2.044
H
CYS
145
B
SG
CYS
145
1_555
H
CYS
200
B
SG
CYS
200
1_555
IMMUNE SYSTEM
Fab, catalytic antibody, retro-Deils-Alderase, IMMUNE SYSTEM
L
SER
99
A
SER
99
1
L
PRO
100
A
PRO
100
-7.06
L
TYR
145
A
TYR
145
1
L
PRO
146
A
PRO
146
-0.26
H
PHE
151
B
PHE
151
1
H
PRO
152
B
PRO
152
-6.11
H
GLU
153
B
GLU
153
1
H
PRO
154
B
PRO
154
-3.50
H
TRP
193
B
TRP
193
1
H
PRO
194
B
PRO
194
3.96
Q99M37
UNP
1
24
Q99M37
1LO4
PDB
2
1LO4
24
236
1LO4
5
217
Q99M37
L
1
5
217
1
220
1LO4
1
220
1LO4
H
2
1
220
4
6
4
4
4
4
5
6
4
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
LEU
4
A
LEU
4
L
THR
7
A
THR
7
L
ALA
19
A
ALA
19
L
SER
25
A
SER
25
L
ASP
75
A
ASP
75
L
ILE
80
A
ILE
80
L
PHE
67
A
PHE
67
L
SER
72
A
SER
72
L
SER
10
A
SER
10
L
SER
14
A
SER
14
L
THR
107
A
THR
107
L
LYS
112
A
LYS
112
L
GLY
89
A
GLY
89
L
GLN
95
A
GLN
95
L
PHE
38
A
PHE
38
L
GLN
43
A
GLN
43
L
PRO
49
A
PRO
49
L
TYR
54
A
TYR
54
L
ASN
58
A
ASN
58
L
ARG
59
A
ARG
59
L
SER
10
A
SER
10
L
SER
14
A
SER
14
L
THR
107
A
THR
107
L
LYS
112
A
LYS
112
L
GLY
89
A
GLY
89
L
GLN
95
A
GLN
95
L
THR
102
A
THR
102
L
PHE
103
A
PHE
103
L
THR
119
A
THR
119
L
PHE
123
A
PHE
123
L
GLY
134
A
GLY
134
L
PHE
144
A
PHE
144
L
TYR
178
A
TYR
178
L
THR
187
A
THR
187
L
VAL
164
A
VAL
164
L
TRP
168
A
TRP
168
L
SER
158
A
SER
158
L
ARG
160
A
ARG
160
L
ASN
150
A
ASN
150
L
ILE
155
A
ILE
155
L
SER
196
A
SER
196
L
THR
202
A
THR
202
L
ILE
210
A
ILE
210
L
ASN
215
A
ASN
215
H
LYS
3
B
LYS
3
H
THR
7
B
THR
7
H
LEU
18
B
LEU
18
H
SER
25
B
SER
25
H
ILE
77
B
ILE
77
H
MET
82
B
MET
82
H
THR
68
B
THR
68
H
ASP
72
B
ASP
72
H
LEU
57
B
LEU
57
H
PHE
59
B
PHE
59
H
LEU
45
B
LEU
45
H
ILE
51
B
ILE
51
H
GLY
33
B
GLY
33
H
GLN
39
B
GLN
39
H
ALA
91
B
ALA
91
H
THR
99
B
THR
99
H
ARG
103
B
ARG
103
H
TRP
108
B
TRP
108
H
LEU
57
B
LEU
57
H
PHE
59
B
PHE
59
H
LEU
45
B
LEU
45
H
ILE
51
B
ILE
51
H
GLY
33
B
GLY
33
H
GLN
39
B
GLN
39
H
ALA
91
B
ALA
91
H
THR
99
B
THR
99
H
THR
112
B
THR
112
H
VAL
116
B
VAL
116
H
LEU
11
B
LEU
11
H
VAL
12
B
VAL
12
H
SER
125
B
SER
125
H
LEU
129
B
LEU
129
H
SER
140
B
SER
140
H
TYR
150
B
TYR
150
H
LEU
179
B
LEU
179
H
THR
189
B
THR
189
H
VAL
168
B
VAL
168
H
THR
170
B
THR
170
H
SER
125
B
SER
125
H
LEU
129
B
LEU
129
H
SER
140
B
SER
140
H
TYR
150
B
TYR
150
H
LEU
179
B
LEU
179
H
THR
189
B
THR
189
H
VAL
174
B
VAL
174
H
GLN
176
B
GLN
176
H
THR
156
B
THR
156
H
TRP
159
B
TRP
159
H
THR
199
B
THR
199
H
HIS
204
B
HIS
204
H
THR
209
B
THR
209
H
LYS
214
B
LYS
214
19
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