0.017146
0.000000
0.000000
0.000000
0.009671
0.000000
0.000000
0.000000
0.013526
0.00000
0.00000
0.00000
Wu, N.
Pai, E.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.322
103.405
73.931
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O3 S
137.158
n
S-HYDROXYCYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
28080
28087
10.1074/jbc.M202362200
12011084
Crystal structures of inhibitor complexes reveal an alternate binding mode in orotidine-5'-monophosphate decarboxylase.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-03-15
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
14-BM-C
APS
1.0
SYNCHROTRON
APS BEAMLINE 14-BM-C
24882.658
orotidine 5'-monophosphate decarboxylase
4.1.1.23
1
man
polymer
324.181
URIDINE-5'-MONOPHOSPHATE
1
syn
non-polymer
18.015
water
193
nat
water
OMP decarboxylase, ompdecase, ompdcase
no
yes
LRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFG(CSO)RIIADFKVADI
PETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVG
PSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLNP
LRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETN
EKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR
PERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLNP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
delta H
Escherichia
sample
2157
Archaea
562
Escherichia coli
plasmid
pET15b
1
2.24
45.06
VAPOR DIFFUSION, HANGING DROP
7.5
trisodium citrate, dioxane, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 25K
298.0
exptl_crystal_grow
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Experimental preparation
1
0
2002-08-07
1
1
2008-04-28
1
2
2011-07-13
1
3
2018-01-31
_exptl_crystal_grow.temp
orotidine monophoshate decarboxylase complexed with XMP
orotidine monophoshate decarboxylase complexed with BMP
orotidine monophoshate decarboxylase mutant delta R203A complexed with 6-azaUMP
orotidine monophoshate decarboxylase complexed with CMP
sequence
Authors state that although residue 1 is MET
and residue 101 is ARG according to the
SwissProt entry, residue 1 was LEU and residue
101 was PRO in the original construct cloned
of MT genomic DNA.
RCSB
Y
RCSB
2002-05-06
REL
REL
U
URIDINE-5'-MONOPHOSPHATE
HOH
water
UMP
2001
2
U
U
2001
A
TIP
3001
3
HOH
HOH
3001
A
TIP
3002
3
HOH
HOH
3002
A
TIP
3003
3
HOH
HOH
3003
A
TIP
3004
3
HOH
HOH
3004
A
TIP
3005
3
HOH
HOH
3005
A
TIP
3006
3
HOH
HOH
3006
A
TIP
3007
3
HOH
HOH
3007
A
TIP
3008
3
HOH
HOH
3008
A
TIP
3009
3
HOH
HOH
3009
A
TIP
3010
3
HOH
HOH
3010
A
TIP
3011
3
HOH
HOH
3011
A
TIP
3012
3
HOH
HOH
3012
A
TIP
3013
3
HOH
HOH
3013
A
TIP
3014
3
HOH
HOH
3014
A
TIP
3015
3
HOH
HOH
3015
A
TIP
3016
3
HOH
HOH
3016
A
TIP
3017
3
HOH
HOH
3017
A
TIP
3018
3
HOH
HOH
3018
A
TIP
3019
3
HOH
HOH
3019
A
TIP
3020
3
HOH
HOH
3020
A
TIP
3021
3
HOH
HOH
3021
A
TIP
3022
3
HOH
HOH
3022
A
TIP
3023
3
HOH
HOH
3023
A
TIP
3024
3
HOH
HOH
3024
A
TIP
3025
3
HOH
HOH
3025
A
TIP
3026
3
HOH
HOH
3026
A
TIP
3027
3
HOH
HOH
3027
A
TIP
3028
3
HOH
HOH
3028
A
TIP
3029
3
HOH
HOH
3029
A
TIP
3030
3
HOH
HOH
3030
A
TIP
3031
3
HOH
HOH
3031
A
TIP
3032
3
HOH
HOH
3032
A
TIP
3033
3
HOH
HOH
3033
A
TIP
3034
3
HOH
HOH
3034
A
TIP
3035
3
HOH
HOH
3035
A
TIP
3036
3
HOH
HOH
3036
A
TIP
3037
3
HOH
HOH
3037
A
TIP
3038
3
HOH
HOH
3038
A
TIP
3039
3
HOH
HOH
3039
A
TIP
3040
3
HOH
HOH
3040
A
TIP
3041
3
HOH
HOH
3041
A
TIP
3042
3
HOH
HOH
3042
A
TIP
3043
3
HOH
HOH
3043
A
TIP
3044
3
HOH
HOH
3044
A
TIP
3045
3
HOH
HOH
3045
A
TIP
3046
3
HOH
HOH
3046
A
TIP
3047
3
HOH
HOH
3047
A
TIP
3048
3
HOH
HOH
3048
A
TIP
3049
3
HOH
HOH
3049
A
TIP
3050
3
HOH
HOH
3050
A
TIP
3051
3
HOH
HOH
3051
A
TIP
3052
3
HOH
HOH
3052
A
TIP
3053
3
HOH
HOH
3053
A
TIP
3054
3
HOH
HOH
3054
A
TIP
3055
3
HOH
HOH
3055
A
TIP
3056
3
HOH
HOH
3056
A
TIP
3057
3
HOH
HOH
3057
A
TIP
3058
3
HOH
HOH
3058
A
TIP
3059
3
HOH
HOH
3059
A
TIP
3060
3
HOH
HOH
3060
A
TIP
3061
3
HOH
HOH
3061
A
TIP
3062
3
HOH
HOH
3062
A
TIP
3063
3
HOH
HOH
3063
A
TIP
3064
3
HOH
HOH
3064
A
TIP
3065
3
HOH
HOH
3065
A
TIP
3066
3
HOH
HOH
3066
A
TIP
3067
3
HOH
HOH
3067
A
TIP
3068
3
HOH
HOH
3068
A
TIP
3069
3
HOH
HOH
3069
A
TIP
3070
3
HOH
HOH
3070
A
TIP
3071
3
HOH
HOH
3071
A
TIP
3072
3
HOH
HOH
3072
A
TIP
3073
3
HOH
HOH
3073
A
TIP
3074
3
HOH
HOH
3074
A
TIP
3075
3
HOH
HOH
3075
A
TIP
3076
3
HOH
HOH
3076
A
TIP
3077
3
HOH
HOH
3077
A
TIP
3078
3
HOH
HOH
3078
A
TIP
3079
3
HOH
HOH
3079
A
TIP
3080
3
HOH
HOH
3080
A
TIP
3081
3
HOH
HOH
3081
A
TIP
3082
3
HOH
HOH
3082
A
TIP
3083
3
HOH
HOH
3083
A
TIP
3084
3
HOH
HOH
3084
A
TIP
3085
3
HOH
HOH
3085
A
TIP
3086
3
HOH
HOH
3086
A
TIP
3087
3
HOH
HOH
3087
A
TIP
3088
3
HOH
HOH
3088
A
TIP
3089
3
HOH
HOH
3089
A
TIP
3090
3
HOH
HOH
3090
A
TIP
3091
3
HOH
HOH
3091
A
TIP
3092
3
HOH
HOH
3092
A
TIP
3093
3
HOH
HOH
3093
A
TIP
3094
3
HOH
HOH
3094
A
TIP
3095
3
HOH
HOH
3095
A
TIP
3096
3
HOH
HOH
3096
A
TIP
3097
3
HOH
HOH
3097
A
TIP
3098
3
HOH
HOH
3098
A
TIP
3099
3
HOH
HOH
3099
A
TIP
3100
3
HOH
HOH
3100
A
TIP
3101
3
HOH
HOH
3101
A
TIP
3102
3
HOH
HOH
3102
A
TIP
3103
3
HOH
HOH
3103
A
TIP
3104
3
HOH
HOH
3104
A
TIP
3105
3
HOH
HOH
3105
A
TIP
3106
3
HOH
HOH
3106
A
TIP
3107
3
HOH
HOH
3107
A
TIP
3108
3
HOH
HOH
3108
A
TIP
3109
3
HOH
HOH
3109
A
TIP
3110
3
HOH
HOH
3110
A
TIP
3111
3
HOH
HOH
3111
A
TIP
3112
3
HOH
HOH
3112
A
TIP
3113
3
HOH
HOH
3113
A
TIP
3114
3
HOH
HOH
3114
A
TIP
3115
3
HOH
HOH
3115
A
TIP
3116
3
HOH
HOH
3116
A
TIP
3117
3
HOH
HOH
3117
A
TIP
3118
3
HOH
HOH
3118
A
TIP
3119
3
HOH
HOH
3119
A
TIP
3120
3
HOH
HOH
3120
A
TIP
3121
3
HOH
HOH
3121
A
TIP
3122
3
HOH
HOH
3122
A
TIP
3123
3
HOH
HOH
3123
A
TIP
3124
3
HOH
HOH
3124
A
TIP
3125
3
HOH
HOH
3125
A
TIP
3126
3
HOH
HOH
3126
A
TIP
3127
3
HOH
HOH
3127
A
TIP
3128
3
HOH
HOH
3128
A
TIP
3129
3
HOH
HOH
3129
A
TIP
3130
3
HOH
HOH
3130
A
TIP
3131
3
HOH
HOH
3131
A
TIP
3132
3
HOH
HOH
3132
A
TIP
3133
3
HOH
HOH
3133
A
TIP
3134
3
HOH
HOH
3134
A
TIP
3135
3
HOH
HOH
3135
A
TIP
3136
3
HOH
HOH
3136
A
TIP
3137
3
HOH
HOH
3137
A
TIP
3138
3
HOH
HOH
3138
A
TIP
3139
3
HOH
HOH
3139
A
TIP
3140
3
HOH
HOH
3140
A
TIP
3141
3
HOH
HOH
3141
A
TIP
3142
3
HOH
HOH
3142
A
TIP
3143
3
HOH
HOH
3143
A
TIP
3144
3
HOH
HOH
3144
A
TIP
3145
3
HOH
HOH
3145
A
TIP
3146
3
HOH
HOH
3146
A
TIP
3147
3
HOH
HOH
3147
A
TIP
3148
3
HOH
HOH
3148
A
TIP
3149
3
HOH
HOH
3149
A
TIP
3150
3
HOH
HOH
3150
A
TIP
3151
3
HOH
HOH
3151
A
TIP
3152
3
HOH
HOH
3152
A
TIP
3153
3
HOH
HOH
3153
A
TIP
3154
3
HOH
HOH
3154
A
TIP
3155
3
HOH
HOH
3155
A
TIP
3156
3
HOH
HOH
3156
A
TIP
3157
3
HOH
HOH
3157
A
TIP
3158
3
HOH
HOH
3158
A
TIP
3159
3
HOH
HOH
3159
A
TIP
3160
3
HOH
HOH
3160
A
TIP
3161
3
HOH
HOH
3161
A
TIP
3162
3
HOH
HOH
3162
A
TIP
3163
3
HOH
HOH
3163
A
TIP
3164
3
HOH
HOH
3164
A
TIP
3165
3
HOH
HOH
3165
A
TIP
3166
3
HOH
HOH
3166
A
TIP
3167
3
HOH
HOH
3167
A
TIP
3168
3
HOH
HOH
3168
A
TIP
3169
3
HOH
HOH
3169
A
TIP
3170
3
HOH
HOH
3170
A
TIP
3171
3
HOH
HOH
3171
A
TIP
3172
3
HOH
HOH
3172
A
TIP
3173
3
HOH
HOH
3173
A
TIP
3174
3
HOH
HOH
3174
A
TIP
3175
3
HOH
HOH
3175
A
TIP
3176
3
HOH
HOH
3176
A
TIP
3177
3
HOH
HOH
3177
A
TIP
3178
3
HOH
HOH
3178
A
TIP
3179
3
HOH
HOH
3179
A
TIP
3180
3
HOH
HOH
3180
A
TIP
3181
3
HOH
HOH
3181
A
TIP
3182
3
HOH
HOH
3182
A
TIP
3183
3
HOH
HOH
3183
A
TIP
3184
3
HOH
HOH
3184
A
TIP
3185
3
HOH
HOH
3185
A
TIP
3186
3
HOH
HOH
3186
A
TIP
3187
3
HOH
HOH
3187
A
TIP
3188
3
HOH
HOH
3188
A
TIP
3189
3
HOH
HOH
3189
A
TIP
3190
3
HOH
HOH
3190
A
TIP
3191
3
HOH
HOH
3191
A
TIP
3192
3
HOH
HOH
3192
A
TIP
3193
3
HOH
HOH
3193
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
ILE
16
n
16
ILE
16
A
LEU
17
n
17
LEU
17
A
ALA
18
n
18
ALA
18
A
MET
19
n
19
MET
19
A
ASP
20
n
20
ASP
20
A
LEU
21
n
21
LEU
21
A
MET
22
n
22
MET
22
A
ASN
23
n
23
ASN
23
A
ARG
24
n
24
ARG
24
A
ASP
25
n
25
ASP
25
A
ASP
26
n
26
ASP
26
A
ALA
27
n
27
ALA
27
A
LEU
28
n
28
LEU
28
A
ARG
29
n
29
ARG
29
A
VAL
30
n
30
VAL
30
A
THR
31
n
31
THR
31
A
GLY
32
n
32
GLY
32
A
GLU
33
n
33
GLU
33
A
VAL
34
n
34
VAL
34
A
ARG
35
n
35
ARG
35
A
GLU
36
n
36
GLU
36
A
TYR
37
n
37
TYR
37
A
ILE
38
n
38
ILE
38
A
ASP
39
n
39
ASP
39
A
THR
40
n
40
THR
40
A
VAL
41
n
41
VAL
41
A
LYS
42
n
42
LYS
42
A
ILE
43
n
43
ILE
43
A
GLY
44
n
44
GLY
44
A
TYR
45
n
45
TYR
45
A
PRO
46
n
46
PRO
46
A
LEU
47
n
47
LEU
47
A
VAL
48
n
48
VAL
48
A
LEU
49
n
49
LEU
49
A
SER
50
n
50
SER
50
A
GLU
51
n
51
GLU
51
A
GLY
52
n
52
GLY
52
A
MET
53
n
53
MET
53
A
ASP
54
n
54
ASP
54
A
ILE
55
n
55
ILE
55
A
ILE
56
n
56
ILE
56
A
ALA
57
n
57
ALA
57
A
GLU
58
n
58
GLU
58
A
PHE
59
n
59
PHE
59
A
ARG
60
n
60
ARG
60
A
LYS
61
n
61
LYS
61
A
ARG
62
n
62
ARG
62
A
PHE
63
n
63
PHE
63
A
GLY
64
n
64
GLY
64
A
CYO
65
n
65
CSO
65
A
ARG
66
n
66
ARG
66
A
ILE
67
n
67
ILE
67
A
ILE
68
n
68
ILE
68
A
ALA
69
n
69
ALA
69
A
ASP
70
n
70
ASP
70
A
PHE
71
n
71
PHE
71
A
LYS
72
n
72
LYS
72
A
VAL
73
n
73
VAL
73
A
ALA
74
n
74
ALA
74
A
ASP
75
n
75
ASP
75
A
ILE
76
n
76
ILE
76
A
PRO
77
n
77
PRO
77
A
GLU
78
n
78
GLU
78
A
THR
79
n
79
THR
79
A
ASN
80
n
80
ASN
80
A
GLU
81
n
81
GLU
81
A
LYS
82
n
82
LYS
82
A
ILE
83
n
83
ILE
83
A
CYS
84
n
84
CYS
84
A
ARG
85
n
85
ARG
85
A
ALA
86
n
86
ALA
86
A
THR
87
n
87
THR
87
A
PHE
88
n
88
PHE
88
A
LYS
89
n
89
LYS
89
A
ALA
90
n
90
ALA
90
A
GLY
91
n
91
GLY
91
A
ALA
92
n
92
ALA
92
A
ASP
93
n
93
ASP
93
A
ALA
94
n
94
ALA
94
A
ILE
95
n
95
ILE
95
A
ILE
96
n
96
ILE
96
A
VAL
97
n
97
VAL
97
A
HIS
98
n
98
HIS
98
A
GLY
99
n
99
GLY
99
A
PHE
100
n
100
PHE
100
A
PRO
101
n
101
PRO
101
A
GLY
102
n
102
GLY
102
A
ALA
103
n
103
ALA
103
A
ASP
104
n
104
ASP
104
A
SER
105
n
105
SER
105
A
VAL
106
n
106
VAL
106
A
ARG
107
n
107
ARG
107
A
ALA
108
n
108
ALA
108
A
CYS
109
n
109
CYS
109
A
LEU
110
n
110
LEU
110
A
ASN
111
n
111
ASN
111
A
VAL
112
n
112
VAL
112
A
ALA
113
n
113
ALA
113
A
GLU
114
n
114
GLU
114
A
GLU
115
n
115
GLU
115
A
MET
116
n
116
MET
116
A
GLY
117
n
117
GLY
117
A
ARG
118
n
118
ARG
118
A
GLU
119
n
119
GLU
119
A
VAL
120
n
120
VAL
120
A
PHE
121
n
121
PHE
121
A
LEU
122
n
122
LEU
122
A
LEU
123
n
123
LEU
123
A
THR
124
n
124
THR
124
A
GLU
125
n
125
GLU
125
A
MET
126
n
126
MET
126
A
SER
127
n
127
SER
127
A
HIS
128
n
128
HIS
128
A
PRO
129
n
129
PRO
129
A
GLY
130
n
130
GLY
130
A
ALA
131
n
131
ALA
131
A
GLU
132
n
132
GLU
132
A
MET
133
n
133
MET
133
A
PHE
134
n
134
PHE
134
A
ILE
135
n
135
ILE
135
A
GLN
136
n
136
GLN
136
A
GLY
137
n
137
GLY
137
A
ALA
138
n
138
ALA
138
A
ALA
139
n
139
ALA
139
A
ASP
140
n
140
ASP
140
A
GLU
141
n
141
GLU
141
A
ILE
142
n
142
ILE
142
A
ALA
143
n
143
ALA
143
A
ARG
144
n
144
ARG
144
A
MET
145
n
145
MET
145
A
GLY
146
n
146
GLY
146
A
VAL
147
n
147
VAL
147
A
ASP
148
n
148
ASP
148
A
LEU
149
n
149
LEU
149
A
GLY
150
n
150
GLY
150
A
VAL
151
n
151
VAL
151
A
LYS
152
n
152
LYS
152
A
ASN
153
n
153
ASN
153
A
TYR
154
n
154
TYR
154
A
VAL
155
n
155
VAL
155
A
GLY
156
n
156
GLY
156
A
PRO
157
n
157
PRO
157
A
SER
158
n
158
SER
158
A
THR
159
n
159
THR
159
A
ARG
160
n
160
ARG
160
A
PRO
161
n
161
PRO
161
A
GLU
162
n
162
GLU
162
A
ARG
163
n
163
ARG
163
A
LEU
164
n
164
LEU
164
A
SER
165
n
165
SER
165
A
ARG
166
n
166
ARG
166
A
LEU
167
n
167
LEU
167
A
ARG
168
n
168
ARG
168
A
GLU
169
n
169
GLU
169
A
ILE
170
n
170
ILE
170
A
ILE
171
n
171
ILE
171
A
GLY
172
n
172
GLY
172
A
GLN
173
n
173
GLN
173
A
ASP
174
n
174
ASP
174
A
SER
175
n
175
SER
175
A
PHE
176
n
176
PHE
176
A
LEU
177
n
177
LEU
177
A
ILE
178
n
178
ILE
178
A
SER
179
n
179
SER
179
A
PRO
180
n
180
PRO
180
A
GLY
181
n
181
GLY
181
A
VAL
182
n
182
VAL
182
A
GLY
183
n
183
GLY
183
A
ALA
184
n
184
ALA
184
A
GLN
185
n
185
GLN
185
A
GLY
186
n
186
GLY
186
A
GLY
187
n
187
GLY
187
A
ASP
188
n
188
ASP
188
A
PRO
189
n
189
PRO
189
A
GLY
190
n
190
GLY
190
A
GLU
191
n
191
GLU
191
A
THR
192
n
192
THR
192
A
LEU
193
n
193
LEU
193
A
ARG
194
n
194
ARG
194
A
PHE
195
n
195
PHE
195
A
ALA
196
n
196
ALA
196
A
ASP
197
n
197
ASP
197
A
ALA
198
n
198
ALA
198
A
ILE
199
n
199
ILE
199
A
ILE
200
n
200
ILE
200
A
VAL
201
n
201
VAL
201
A
GLY
202
n
202
GLY
202
A
ARG
203
n
203
ARG
203
A
SER
204
n
204
SER
204
A
ILE
205
n
205
ILE
205
A
TYR
206
n
206
TYR
206
A
LEU
207
n
207
LEU
207
A
ALA
208
n
208
ALA
208
A
ASP
209
n
209
ASP
209
A
ASN
210
n
210
ASN
210
A
PRO
211
n
211
PRO
211
A
ALA
212
n
212
ALA
212
A
ALA
213
n
213
ALA
213
A
ALA
214
n
214
ALA
214
A
ALA
215
n
215
ALA
215
A
ALA
216
n
216
ALA
216
A
GLY
217
n
217
GLY
217
A
ILE
218
n
218
ILE
218
A
ILE
219
n
219
ILE
219
A
GLU
220
n
220
GLU
220
A
SER
221
n
221
SER
221
A
ILE
222
n
222
ILE
222
A
n
223
223
A
n
224
224
A
n
225
225
A
n
226
226
A
n
227
227
A
n
228
228
A
author_defined_assembly
2
dimeric
software_defined_assembly
PISA,PQS
2
dimeric
3310
-27
15320
A
CSO
65
S-HYDROXYCYSTEINE
A
CSO
65
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_656
-x+1,y,-z+3/2
crystal symmetry operation
58.3220000000
0.0000000000
110.8965000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_566
x,-y+1,-z+1
crystal symmetry operation
0.0000000000
103.4050000000
73.9310000000
A
N
LEU
17
A
N
LEU
17
A
O
LYS
42
A
O
LYS
42
A
N
VAL
41
A
N
VAL
41
A
O
ARG
66
A
O
ARG
66
A
N
ALA
69
A
N
ALA
69
A
O
ALA
94
A
O
ALA
94
A
N
VAL
97
A
N
VAL
97
A
O
LEU
123
A
O
LEU
123
A
N
LEU
122
A
N
LEU
122
A
O
ASN
153
A
O
ASN
153
A
N
TYR
154
A
N
TYR
154
A
O
PHE
176
A
O
PHE
176
A
N
SER
179
A
N
SER
179
A
O
ILE
200
A
O
ILE
200
A
O
ILE
199
A
O
ILE
199
A
N
ILE
16
A
N
ILE
16
1
A
HOH
3001
C
HOH
1
A
HOH
3015
C
HOH
1
A
LEU
1
A
LEU
1
1
Y
1
A
ARG
2
A
ARG
2
1
Y
1
A
SER
3
A
SER
3
1
Y
1
A
ARG
4
A
ARG
4
1
Y
1
A
ARG
5
A
ARG
5
1
Y
1
A
VAL
6
A
VAL
6
1
Y
1
A
ASP
7
A
ASP
7
1
Y
1
A
VAL
8
A
VAL
8
1
Y
1
A
MET
9
A
MET
9
1
Y
1
A
ASP
10
A
ASP
10
1
Y
1
A
VAL
11
A
VAL
11
1
Y
1
A
MET
12
A
MET
12
1
Y
1
A
ASN
13
A
ASN
13
1
Y
1
A
LYS
223
A
LYS
223
1
Y
1
A
ASP
224
A
ASP
224
1
Y
1
A
LEU
225
A
LEU
225
1
Y
1
A
LEU
226
A
LEU
226
1
Y
1
A
ASN
227
A
ASN
227
1
Y
1
A
PRO
228
A
PRO
228
1
Y
1
A
A
OE2
O
GLU
HOH
78
3184
1.58
1
A
A
N
O
ARG
HOH
14
3185
1.62
1
A
A
OE2
O
GLU
HOH
125
3182
1.63
1
A
A
OE2
O
GLU
HOH
115
3186
2.16
1
A
A
NH1
NH1
ARG
ARG
144
144
2.01
1_555
3_756
1
A
ALA
74
-148.71
49.66
1
A
PHE
134
-132.26
-38.16
PROTEIN.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
U5P.PARAM
U5P.TOP
16.6
-0.61
0.00
0.00
-3.76
0.00
4.37
0.1980000
0.004
0.1730000
0.1730000
0.1730000
1.50
29.89
2538
33965
33965
7.5
93.8
RANDOM
683106.06
683106.06
0
1
RESTRAINED
THROUGHOUT
0
MOLECULAR REPLACEMENT
FLAT MODEL
27.9784
0.393402
0.17
0.07
1.50
29.89
193
1797
21
0
1583
0.010
1.6
22.6
1.21
1.59
1.50
2.13
2.00
2.97
2.00
4.15
2.50
0.2080000
0.014
0.1920000
1.59
235
4291
6
5.2
76.2
15.3
1.5
30
1LOQ
34387
34387
0
0
1
95.2
1.5
1.55
1
73.9
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
orotidine monophosphate decarboxylase, (E.C.4.1.1.23)
Crystal structure of orotidine monophosphate decarboxylase complexed with product UMP
1
N
N
2
N
N
3
N
N
The second part of the biological dimer is generated by the two fold axis -x, y, -z+1/2
A
ASN
23
A
ASN
23
HELX_P
A
ARG
35
A
ARG
35
1
1
13
A
GLU
36
A
GLU
36
HELX_P
A
ILE
38
A
ILE
38
5
2
3
A
TYR
45
A
TYR
45
HELX_P
A
GLY
52
A
GLY
52
1
3
8
A
MET
53
A
MET
53
HELX_P
A
GLY
64
A
GLY
64
1
4
12
A
ILE
76
A
ILE
76
HELX_P
A
ALA
90
A
ALA
90
1
5
15
A
GLY
102
A
GLY
102
HELX_P
A
GLY
117
A
GLY
117
1
6
16
A
HIS
128
A
HIS
128
HELX_P
A
MET
133
A
MET
133
5
7
6
A
PHE
134
A
PHE
134
HELX_P
A
GLY
150
A
GLY
150
1
8
17
A
ARG
160
A
ARG
160
HELX_P
A
GLY
172
A
GLY
172
1
9
13
A
ASP
188
A
ASP
188
HELX_P
A
LEU
193
A
LEU
193
1
10
6
A
GLY
202
A
GLY
202
HELX_P
A
LEU
207
A
LEU
207
1
11
6
A
ASN
210
A
ASN
210
HELX_P
A
SER
221
A
SER
221
1
12
12
covale
1.329
A
GLY
64
A
C
GLY
64
1_555
A
CSO
65
A
N
CSO
65
1_555
covale
1.327
A
CSO
65
A
C
CSO
65
1_555
A
ARG
66
A
N
ARG
66
1_555
LYASE
TIM barrel, Lyase
PYRF_METTH
UNP
1
1
O26232
MRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETN
EKICRATFKAGADAIIVHGFRGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR
PERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLNP
1
228
1LOQ
1
228
O26232
A
1
1
228
1
MET
SEE REMARK 999
LEU
1
1LOQ
A
O26232
UNP
1
1
1
CYS
MODIFIED RESIDUE
CSO
65
1LOQ
A
O26232
UNP
65
65
1
ARG
SEE REMARK 999
PRO
101
1LOQ
A
O26232
UNP
101
101
9
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
LEU
15
A
LEU
15
A
MET
19
A
MET
19
A
THR
40
A
THR
40
A
GLY
44
A
GLY
44
A
ARG
66
A
ARG
66
A
VAL
73
A
VAL
73
A
ALA
94
A
ALA
94
A
HIS
98
A
HIS
98
A
GLU
119
A
GLU
119
A
LEU
123
A
LEU
123
A
ASN
153
A
ASN
153
A
VAL
155
A
VAL
155
A
PHE
176
A
PHE
176
A
SER
179
A
SER
179
A
ALA
198
A
ALA
198
A
VAL
201
A
VAL
201
A
LEU
15
A
LEU
15
A
MET
19
A
MET
19
BINDING SITE FOR RESIDUE U A 2001
Software
19
A
ASP
20
A
ASP
20
19
1_555
A
LYS
42
A
LYS
42
19
1_555
A
ASP
70
A
ASP
70
19
1_555
A
LYS
72
A
LYS
72
19
1_555
A
ASP
75
A
ASP
75
19
4_566
A
ILE
76
A
ILE
76
19
4_566
A
THR
79
A
THR
79
19
4_566
A
MET
126
A
MET
126
19
1_555
A
SER
127
A
SER
127
19
1_555
A
PRO
180
A
PRO
180
19
1_555
A
GLN
185
A
GLN
185
19
1_555
A
GLY
202
A
GLY
202
19
1_555
A
ARG
203
A
ARG
203
19
1_555
A
HOH
3006
C
HOH
19
1_555
A
HOH
3009
C
HOH
19
1_555
A
HOH
3011
C
HOH
19
1_555
A
HOH
3012
C
HOH
19
1_555
A
HOH
3013
C
HOH
19
1_555
A
HOH
3014
C
HOH
19
1_555
20
C 2 2 21