0.018003
0.010394
0.000000
0.000000
0.020788
0.000000
0.000000
0.000000
0.006421
0.00000
0.00000
0.00000
Hogbom, M.
Eklund, M.
Nygren, P.A.
Nordlund, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
55.546
55.546
155.749
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
MG
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
Y
227
N
C
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
O
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
S
N
272
N
O
N
273
N
O
N
274
N
O
N
275
N
O
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
R
C
N
281
N
O
N
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
N
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
N
331
N
O
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
C
N
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
doub
Y
217
N
sing
Y
218
N
sing
N
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
doub
Y
290
N
sing
Y
291
N
sing
N
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
sing
N
296
N
sing
Y
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
100
3191
3196
10.1073/pnas.0436100100
12604795
Structural basis for recognition by an in vitro evolved affibody.
2003
10.2210/pdb1lp1/pdb
pdb_00001lp1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-10-01
MARRESEARCH
asymmetrically cut Si(111) monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.098
1.0
I711
MAX II
1.098
SYNCHROTRON
MAX II BEAMLINE I711
6447.263
Affibody binding protein Z
In vitro selected binding protein
1
man
polymer
6648.316
Immunoglobulin G binding protein A
RESIDUES 2-58
A1V, G29A
1
man
polymer
96.063
SULFATE ION
4
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
182
nat
water
no
no
VDNKFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK
VDNKFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK
A
polypeptide(L)
no
no
VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK
VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Staphylococcus
Escherichia
sample
1280
Staphylococcus aureus
562
Escherichia coli
Staphylococcus
Escherichia
sample
1280
Staphylococcus aureus
562
Escherichia coli
1
2.32
46.45
VAPOR DIFFUSION, SITTING DROP
6.5
MgSO4, MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
diffrn_source
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
Refinement description
1
0
2003-03-18
1
1
2008-04-28
1
2
2011-07-13
1
3
2018-05-23
1
4
2021-11-10
1
5
2023-10-25
_diffrn_source.pdbx_synchrotron_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NMR structure of protein Z, one of the proteins in the complex
RCSB
Y
PDBJ
2002-05-07
REL
REL
SO4
SULFATE ION
MG
MAGNESIUM ION
HOH
water
1DEE
Polyserine model of PDB entry 1DEE, chain G
PDB
experimental model
SO4
1
3
SO4
SO4
301
A
SO4
4
3
SO4
SO4
304
A
SO4
2
3
SO4
SO4
302
B
SO4
3
3
SO4
SO4
303
B
MG2
1
4
MG
MG
401
B
HOH
1
5
HOH
HOH
305
A
HOH
10
5
HOH
HOH
306
A
HOH
11
5
HOH
HOH
307
A
HOH
17
5
HOH
HOH
308
A
HOH
21
5
HOH
HOH
309
A
HOH
56
5
HOH
HOH
310
A
HOH
60
5
HOH
HOH
311
A
HOH
64
5
HOH
HOH
312
A
HOH
75
5
HOH
HOH
313
A
HOH
76
5
HOH
HOH
314
A
HOH
78
5
HOH
HOH
315
A
HOH
79
5
HOH
HOH
316
A
HOH
81
5
HOH
HOH
317
A
HOH
82
5
HOH
HOH
318
A
HOH
84
5
HOH
HOH
319
A
HOH
85
5
HOH
HOH
320
A
HOH
86
5
HOH
HOH
321
A
HOH
88
5
HOH
HOH
322
A
HOH
89
5
HOH
HOH
323
A
HOH
90
5
HOH
HOH
324
A
HOH
91
5
HOH
HOH
325
A
HOH
95
5
HOH
HOH
326
A
HOH
101
5
HOH
HOH
327
A
HOH
106
5
HOH
HOH
328
A
HOH
107
5
HOH
HOH
329
A
HOH
109
5
HOH
HOH
330
A
HOH
112
5
HOH
HOH
331
A
HOH
114
5
HOH
HOH
332
A
HOH
115
5
HOH
HOH
333
A
HOH
119
5
HOH
HOH
334
A
HOH
120
5
HOH
HOH
335
A
HOH
122
5
HOH
HOH
336
A
HOH
123
5
HOH
HOH
337
A
HOH
124
5
HOH
HOH
338
A
HOH
125
5
HOH
HOH
339
A
HOH
127
5
HOH
HOH
340
A
HOH
129
5
HOH
HOH
341
A
HOH
130
5
HOH
HOH
342
A
HOH
131
5
HOH
HOH
343
A
HOH
133
5
HOH
HOH
344
A
HOH
137
5
HOH
HOH
345
A
HOH
140
5
HOH
HOH
346
A
HOH
144
5
HOH
HOH
347
A
HOH
146
5
HOH
HOH
348
A
HOH
147
5
HOH
HOH
349
A
HOH
149
5
HOH
HOH
350
A
HOH
150
5
HOH
HOH
351
A
HOH
151
5
HOH
HOH
352
A
HOH
152
5
HOH
HOH
353
A
HOH
153
5
HOH
HOH
354
A
HOH
155
5
HOH
HOH
355
A
HOH
157
5
HOH
HOH
356
A
HOH
160
5
HOH
HOH
357
A
HOH
161
5
HOH
HOH
358
A
HOH
165
5
HOH
HOH
359
A
HOH
170
5
HOH
HOH
360
A
HOH
171
5
HOH
HOH
361
A
HOH
175
5
HOH
HOH
362
A
HOH
182
5
HOH
HOH
363
A
HOH
183
5
HOH
HOH
364
A
HOH
184
5
HOH
HOH
365
A
HOH
190
5
HOH
HOH
366
A
HOH
192
5
HOH
HOH
367
A
HOH
193
5
HOH
HOH
368
A
HOH
194
5
HOH
HOH
369
A
HOH
196
5
HOH
HOH
370
A
HOH
198
5
HOH
HOH
371
A
HOH
199
5
HOH
HOH
372
A
HOH
201
5
HOH
HOH
373
A
HOH
208
5
HOH
HOH
374
A
HOH
212
5
HOH
HOH
375
A
HOH
218
5
HOH
HOH
376
A
HOH
228
5
HOH
HOH
377
A
HOH
229
5
HOH
HOH
378
A
HOH
230
5
HOH
HOH
379
A
HOH
231
5
HOH
HOH
380
A
HOH
232
5
HOH
HOH
381
A
HOH
234
5
HOH
HOH
382
A
HOH
235
5
HOH
HOH
383
A
HOH
236
5
HOH
HOH
384
A
HOH
239
5
HOH
HOH
385
A
HOH
240
5
HOH
HOH
386
A
HOH
241
5
HOH
HOH
387
A
HOH
242
5
HOH
HOH
388
A
HOH
243
5
HOH
HOH
389
A
HOH
244
5
HOH
HOH
390
A
HOH
245
5
HOH
HOH
391
A
HOH
247
5
HOH
HOH
392
A
HOH
248
5
HOH
HOH
393
A
HOH
249
5
HOH
HOH
394
A
HOH
253
5
HOH
HOH
395
A
HOH
254
5
HOH
HOH
396
A
HOH
257
5
HOH
HOH
397
A
HOH
113
5
HOH
HOH
398
A
HOH
128
5
HOH
HOH
399
A
HOH
136
5
HOH
HOH
400
A
HOH
172
5
HOH
HOH
401
A
HOH
186
5
HOH
HOH
402
A
HOH
213
5
HOH
HOH
403
A
HOH
2
5
HOH
HOH
402
B
HOH
20
5
HOH
HOH
403
B
HOH
73
5
HOH
HOH
404
B
HOH
77
5
HOH
HOH
405
B
HOH
80
5
HOH
HOH
406
B
HOH
83
5
HOH
HOH
407
B
HOH
87
5
HOH
HOH
408
B
HOH
92
5
HOH
HOH
409
B
HOH
93
5
HOH
HOH
410
B
HOH
96
5
HOH
HOH
411
B
HOH
97
5
HOH
HOH
412
B
HOH
99
5
HOH
HOH
413
B
HOH
102
5
HOH
HOH
414
B
HOH
104
5
HOH
HOH
415
B
HOH
108
5
HOH
HOH
416
B
HOH
110
5
HOH
HOH
417
B
HOH
111
5
HOH
HOH
418
B
HOH
116
5
HOH
HOH
419
B
HOH
117
5
HOH
HOH
420
B
HOH
118
5
HOH
HOH
421
B
HOH
121
5
HOH
HOH
422
B
HOH
126
5
HOH
HOH
423
B
HOH
132
5
HOH
HOH
424
B
HOH
134
5
HOH
HOH
425
B
HOH
135
5
HOH
HOH
426
B
HOH
138
5
HOH
HOH
427
B
HOH
139
5
HOH
HOH
428
B
HOH
141
5
HOH
HOH
429
B
HOH
142
5
HOH
HOH
430
B
HOH
143
5
HOH
HOH
431
B
HOH
145
5
HOH
HOH
432
B
HOH
148
5
HOH
HOH
433
B
HOH
154
5
HOH
HOH
434
B
HOH
156
5
HOH
HOH
435
B
HOH
158
5
HOH
HOH
436
B
HOH
159
5
HOH
HOH
437
B
HOH
162
5
HOH
HOH
438
B
HOH
164
5
HOH
HOH
439
B
HOH
166
5
HOH
HOH
440
B
HOH
167
5
HOH
HOH
441
B
HOH
169
5
HOH
HOH
442
B
HOH
173
5
HOH
HOH
443
B
HOH
176
5
HOH
HOH
444
B
HOH
177
5
HOH
HOH
445
B
HOH
178
5
HOH
HOH
446
B
HOH
179
5
HOH
HOH
447
B
HOH
180
5
HOH
HOH
448
B
HOH
181
5
HOH
HOH
449
B
HOH
185
5
HOH
HOH
450
B
HOH
188
5
HOH
HOH
451
B
HOH
189
5
HOH
HOH
452
B
HOH
191
5
HOH
HOH
453
B
HOH
195
5
HOH
HOH
454
B
HOH
197
5
HOH
HOH
455
B
HOH
202
5
HOH
HOH
456
B
HOH
203
5
HOH
HOH
457
B
HOH
204
5
HOH
HOH
458
B
HOH
205
5
HOH
HOH
459
B
HOH
206
5
HOH
HOH
460
B
HOH
207
5
HOH
HOH
461
B
HOH
209
5
HOH
HOH
462
B
HOH
210
5
HOH
HOH
463
B
HOH
211
5
HOH
HOH
464
B
HOH
214
5
HOH
HOH
465
B
HOH
215
5
HOH
HOH
466
B
HOH
216
5
HOH
HOH
467
B
HOH
217
5
HOH
HOH
468
B
HOH
219
5
HOH
HOH
469
B
HOH
220
5
HOH
HOH
470
B
HOH
221
5
HOH
HOH
471
B
HOH
222
5
HOH
HOH
472
B
HOH
224
5
HOH
HOH
473
B
HOH
225
5
HOH
HOH
474
B
HOH
226
5
HOH
HOH
475
B
HOH
227
5
HOH
HOH
476
B
HOH
233
5
HOH
HOH
477
B
HOH
246
5
HOH
HOH
478
B
HOH
250
5
HOH
HOH
479
B
HOH
251
5
HOH
HOH
480
B
HOH
252
5
HOH
HOH
481
B
HOH
255
5
HOH
HOH
482
B
HOH
256
5
HOH
HOH
483
B
HOH
105
5
HOH
HOH
484
B
n
1
1
A
n
2
2
A
n
3
3
A
LYS
4
n
4
LYS
4
A
PHE
5
n
5
PHE
5
A
ASN
6
n
6
ASN
6
A
LYS
7
n
7
LYS
7
A
GLU
8
n
8
GLU
8
A
LEU
9
n
9
LEU
9
A
SER
10
n
10
SER
10
A
VAL
11
n
11
VAL
11
A
ALA
12
n
12
ALA
12
A
GLY
13
n
13
GLY
13
A
ARG
14
n
14
ARG
14
A
GLU
15
n
15
GLU
15
A
ILE
16
n
16
ILE
16
A
VAL
17
n
17
VAL
17
A
THR
18
n
18
THR
18
A
LEU
19
n
19
LEU
19
A
PRO
20
n
20
PRO
20
A
ASN
21
n
21
ASN
21
A
LEU
22
n
22
LEU
22
A
ASN
23
n
23
ASN
23
A
ASP
24
n
24
ASP
24
A
PRO
25
n
25
PRO
25
A
GLN
26
n
26
GLN
26
A
LYS
27
n
27
LYS
27
A
LYS
28
n
28
LYS
28
A
ALA
29
n
29
ALA
29
A
PHE
30
n
30
PHE
30
A
ILE
31
n
31
ILE
31
A
PHE
32
n
32
PHE
32
A
SER
33
n
33
SER
33
A
LEU
34
n
34
LEU
34
A
TRP
35
n
35
TRP
35
A
ASP
36
n
36
ASP
36
A
ASP
37
n
37
ASP
37
A
PRO
38
n
38
PRO
38
A
SER
39
n
39
SER
39
A
GLN
40
n
40
GLN
40
A
SER
41
n
41
SER
41
A
ALA
42
n
42
ALA
42
A
ASN
43
n
43
ASN
43
A
LEU
44
n
44
LEU
44
A
LEU
45
n
45
LEU
45
A
ALA
46
n
46
ALA
46
A
GLU
47
n
47
GLU
47
A
ALA
48
n
48
ALA
48
A
LYS
49
n
49
LYS
49
A
LYS
50
n
50
LYS
50
A
LEU
51
n
51
LEU
51
A
ASN
52
n
52
ASN
52
A
ASP
53
n
53
ASP
53
A
ALA
54
n
54
ALA
54
A
GLN
55
n
55
GLN
55
A
ALA
56
n
56
ALA
56
A
PRO
57
n
57
PRO
57
A
LYS
58
n
58
LYS
58
A
n
1
1
B
n
2
2
B
n
3
3
B
LYS
4
n
4
LYS
4
B
PHE
5
n
5
PHE
5
B
ASN
6
n
6
ASN
6
B
LYS
7
n
7
LYS
7
B
GLU
8
n
8
GLU
8
B
GLN
9
n
9
GLN
9
B
GLN
10
n
10
GLN
10
B
ASN
11
n
11
ASN
11
B
ALA
12
n
12
ALA
12
B
PHE
13
n
13
PHE
13
B
TYR
14
n
14
TYR
14
B
GLU
15
n
15
GLU
15
B
ILE
16
n
16
ILE
16
B
LEU
17
n
17
LEU
17
B
HIS
18
n
18
HIS
18
B
LEU
19
n
19
LEU
19
B
PRO
20
n
20
PRO
20
B
ASN
21
n
21
ASN
21
B
LEU
22
n
22
LEU
22
B
ASN
23
n
23
ASN
23
B
GLU
24
n
24
GLU
24
B
GLU
25
n
25
GLU
25
B
GLN
26
n
26
GLN
26
B
ARG
27
n
27
ARG
27
B
ASN
28
n
28
ASN
28
B
ALA
29
n
29
ALA
29
B
PHE
30
n
30
PHE
30
B
ILE
31
n
31
ILE
31
B
GLN
32
n
32
GLN
32
B
SER
33
n
33
SER
33
B
LEU
34
n
34
LEU
34
B
LYS
35
n
35
LYS
35
B
ASP
36
n
36
ASP
36
B
ASP
37
n
37
ASP
37
B
PRO
38
n
38
PRO
38
B
SER
39
n
39
SER
39
B
GLN
40
n
40
GLN
40
B
SER
41
n
41
SER
41
B
ALA
42
n
42
ALA
42
B
ASN
43
n
43
ASN
43
B
LEU
44
n
44
LEU
44
B
LEU
45
n
45
LEU
45
B
ALA
46
n
46
ALA
46
B
GLU
47
n
47
GLU
47
B
ALA
48
n
48
ALA
48
B
LYS
49
n
49
LYS
49
B
LYS
50
n
50
LYS
50
B
LEU
51
n
51
LEU
51
B
ASN
52
n
52
ASN
52
B
ASP
53
n
53
ASP
53
B
ALA
54
n
54
ALA
54
B
GLN
55
n
55
GLN
55
B
ALA
56
n
56
ALA
56
B
PRO
57
n
57
PRO
57
B
n
58
58
B
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
2350
-55
6280
6360
-128
10890
B
GLU
25
B
OE1
GLU
25
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
302
E
O1
SO4
1_555
130.5
B
GLU
25
B
OE1
GLU
25
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
302
E
O3
SO4
1_555
92.9
B
SO4
302
E
O1
SO4
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
302
E
O3
SO4
1_555
50.6
B
GLU
25
B
OE1
GLU
25
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
S
SO4
1_555
116.3
B
SO4
302
E
O1
SO4
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
S
SO4
1_555
105.9
B
SO4
302
E
O3
SO4
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
S
SO4
1_555
150.6
B
GLU
25
B
OE1
GLU
25
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
O3
SO4
1_555
103.7
B
SO4
302
E
O1
SO4
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
O3
SO4
1_555
125.8
B
SO4
302
E
O3
SO4
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
O3
SO4
1_555
141.8
B
SO4
303
F
S
SO4
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
O3
SO4
1_555
32.3
B
GLU
25
B
OE1
GLU
25
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
O4
SO4
1_555
141.9
B
SO4
302
E
O1
SO4
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
O4
SO4
1_555
73.3
B
SO4
302
E
O3
SO4
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
O4
SO4
1_555
121.6
B
SO4
303
F
S
SO4
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
O4
SO4
1_555
32.7
B
SO4
303
F
O3
SO4
1_555
B
MG
401
G
MG
MG
1_555
B
SO4
303
F
O4
SO4
1_555
60.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_555
x,x-y,-z+1/6
crystal symmetry operation
0.0000000000
0.0000000000
25.9581666667
1
A
VAL
1
A
VAL
1
1
Y
1
A
ASP
2
A
ASP
2
1
Y
1
A
ASN
3
A
ASN
3
1
Y
1
B
VAL
1
B
VAL
1
1
Y
1
B
ASP
2
B
ASP
2
1
Y
1
B
ASN
3
B
ASN
3
1
Y
1
B
LYS
58
B
LYS
58
1
Y
1
A
PHE
5
-58.74
9.45
1
A
GLN
40
-98.74
34.06
1
B
ASP
37
-115.11
76.01
1
B
PRO
38
-41.80
-16.94
0.256
0.224
0.225
0.225
2.3
20
327
6865
6865
RANDOM
1
0
MOLECULAR REPLACEMENT
Polyserine model of PDB entry 1DEE, chain G
Engh & Huber
2.3
20
182
1071
21
0
868
1.165
0.006
51.3
2.3
30
1LP1
6899
6899
0
0
0.05
1
8.3
99.8
0.296
2.30
2.38
99.8
data reduction
DENZO
data scaling
SCALEPACK
phasing
EPMR
refinement
CNS
Protein Z in complex with an in vitro selected affibody
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
LYS
4
A
LYS
4
HELX_P
A
THR
18
A
THR
18
1
1
15
A
ASN
23
A
ASN
23
HELX_P
A
ASP
37
A
ASP
37
1
2
15
A
GLN
40
A
GLN
40
HELX_P
A
GLN
55
A
GLN
55
1
3
16
B
PHE
5
B
PHE
5
HELX_P
B
LEU
17
B
LEU
17
1
4
13
B
ASN
23
B
ASN
23
HELX_P
B
ASP
37
B
ASP
37
1
5
15
B
GLN
40
B
GLN
40
HELX_P
B
GLN
55
B
GLN
55
1
6
16
metalc
2.609
B
GLU
25
B
OE1
GLU
25
1_555
B
MG
401
G
MG
MG
1_555
metalc
2.903
B
SO4
302
E
O1
SO4
1_555
B
MG
401
G
MG
MG
1_555
metalc
2.780
B
SO4
302
E
O3
SO4
1_555
B
MG
401
G
MG
MG
1_555
metalc
2.746
B
SO4
303
F
S
SO4
1_555
B
MG
401
G
MG
MG
1_555
metalc
2.531
B
SO4
303
F
O3
SO4
1_555
B
MG
401
G
MG
MG
1_555
metalc
2.316
B
SO4
303
F
O4
SO4
1_555
B
MG
401
G
MG
MG
1_555
IMMUNE SYSTEM
in vitro evolved, protein-protein complex, three-helix bundle, affibody, IMMUNE SYSTEM
SPA2_STAAU
UNP
2
212
P38507
ADNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQAPK
1LP1
PDB
1
1LP1
212
269
1LP1
1
58
P38507
B
1
1
58
1
58
1LP1
1
58
1LP1
A
2
1
58
1
ALA
engineered mutation
VAL
1
1LP1
B
P38507
UNP
212
1
1
GLY
engineered mutation
ALA
29
1LP1
B
P38507
UNP
240
29
BINDING SITE FOR RESIDUE SO4 A 301
A
SO4
301
Software
5
BINDING SITE FOR RESIDUE SO4 B 302
B
SO4
302
Software
5
BINDING SITE FOR RESIDUE SO4 B 303
B
SO4
303
Software
9
BINDING SITE FOR RESIDUE SO4 A 304
A
SO4
304
Software
5
BINDING SITE FOR RESIDUE MG B 401
B
MG
401
Software
4
A
ARG
14
A
ARG
14
5
1_555
A
HOH
317
H
HOH
5
1_555
A
HOH
322
H
HOH
5
1_555
A
HOH
386
H
HOH
5
1_555
B
ARG
27
B
ARG
27
5
1_555
B
ASN
23
B
ASN
23
5
1_555
B
GLU
24
B
GLU
24
5
1_555
B
SO4
303
F
SO4
5
1_555
B
MG
401
G
MG
5
1_555
B
HOH
439
I
HOH
5
1_555
A
ASP
36
A
ASP
36
9
8_565
A
HOH
336
H
HOH
9
8_565
B
ASN
6
B
ASN
6
9
8_565
B
GLN
10
B
GLN
10
9
8_565
B
GLU
25
B
GLU
25
9
1_555
B
SO4
302
E
SO4
9
1_555
B
MG
401
G
MG
9
1_555
B
HOH
414
I
HOH
9
1_555
B
HOH
444
I
HOH
9
1_555
A
ASN
23
A
ASN
23
5
1_555
A
ASP
24
A
ASP
24
5
1_555
A
PRO
25
A
PRO
25
5
1_555
A
HOH
340
H
HOH
5
8_665
A
HOH
403
H
HOH
5
1_555
B
ASN
23
B
ASN
23
4
1_555
B
GLU
25
B
GLU
25
4
1_555
B
SO4
302
E
SO4
4
1_555
B
SO4
303
F
SO4
4
1_555
178
P 61 2 2