0.018003 0.010394 0.000000 0.000000 0.020788 0.000000 0.000000 0.000000 0.006421 0.00000 0.00000 0.00000 Hogbom, M. Eklund, M. Nygren, P.A. Nordlund, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 55.546 55.546 155.749 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N MG N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C Y 222 N C Y 223 N C Y 224 N C Y 225 N C Y 226 N C Y 227 N C N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 S C N 259 N C N 260 N O N 261 N C N 262 N O N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N S N 272 N O N 273 N O N 274 N O N 275 N O N 276 N N N 277 S C N 278 N C N 279 N O N 280 R C N 281 N O N 282 N C N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N N Y 302 N C Y 303 N C Y 304 N C Y 305 N C Y 306 N C N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C N 331 N O N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N N N 345 S C N 346 N C N 347 N O N 348 N C N 349 N C N 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing Y 216 N doub Y 217 N sing Y 218 N sing N 219 N sing Y 220 N doub N 221 N sing Y 222 N doub N 223 N sing Y 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N doub Y 290 N sing Y 291 N sing N 292 N sing Y 293 N doub Y 294 N sing Y 295 N sing N 296 N sing Y 297 N sing Y 298 N doub N 299 N sing Y 300 N doub N 301 N sing Y 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub N 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 100 3191 3196 10.1073/pnas.0436100100 12604795 Structural basis for recognition by an in vitro evolved affibody. 2003 10.2210/pdb1lp1/pdb pdb_00001lp1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-10-01 MARRESEARCH asymmetrically cut Si(111) monochromator SINGLE WAVELENGTH M x-ray 1 1.098 1.0 I711 MAX II 1.098 SYNCHROTRON MAX II BEAMLINE I711 6447.263 Affibody binding protein Z In vitro selected binding protein 1 man polymer 6648.316 Immunoglobulin G binding protein A RESIDUES 2-58 A1V, G29A 1 man polymer 96.063 SULFATE ION 4 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 182 nat water no no VDNKFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK VDNKFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK A polypeptide(L) no no VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Staphylococcus Escherichia sample 1280 Staphylococcus aureus 562 Escherichia coli Staphylococcus Escherichia sample 1280 Staphylococcus aureus 562 Escherichia coli 1 2.32 46.45 VAPOR DIFFUSION, SITTING DROP 6.5 MgSO4, MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 diffrn_source database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Data collection Refinement description 1 0 2003-03-18 1 1 2008-04-28 1 2 2011-07-13 1 3 2018-05-23 1 4 2021-11-10 1 5 2023-10-25 _diffrn_source.pdbx_synchrotron_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NMR structure of protein Z, one of the proteins in the complex RCSB Y PDBJ 2002-05-07 REL REL SO4 SULFATE ION MG MAGNESIUM ION HOH water 1DEE Polyserine model of PDB entry 1DEE, chain G PDB experimental model SO4 1 3 SO4 SO4 301 A SO4 4 3 SO4 SO4 304 A SO4 2 3 SO4 SO4 302 B SO4 3 3 SO4 SO4 303 B MG2 1 4 MG MG 401 B HOH 1 5 HOH HOH 305 A HOH 10 5 HOH HOH 306 A HOH 11 5 HOH HOH 307 A HOH 17 5 HOH HOH 308 A HOH 21 5 HOH HOH 309 A HOH 56 5 HOH HOH 310 A HOH 60 5 HOH HOH 311 A HOH 64 5 HOH HOH 312 A HOH 75 5 HOH HOH 313 A HOH 76 5 HOH HOH 314 A HOH 78 5 HOH HOH 315 A HOH 79 5 HOH HOH 316 A HOH 81 5 HOH HOH 317 A HOH 82 5 HOH HOH 318 A HOH 84 5 HOH HOH 319 A HOH 85 5 HOH HOH 320 A HOH 86 5 HOH HOH 321 A HOH 88 5 HOH HOH 322 A HOH 89 5 HOH HOH 323 A HOH 90 5 HOH HOH 324 A HOH 91 5 HOH HOH 325 A HOH 95 5 HOH HOH 326 A HOH 101 5 HOH HOH 327 A HOH 106 5 HOH HOH 328 A HOH 107 5 HOH HOH 329 A HOH 109 5 HOH HOH 330 A HOH 112 5 HOH HOH 331 A HOH 114 5 HOH HOH 332 A HOH 115 5 HOH HOH 333 A HOH 119 5 HOH HOH 334 A HOH 120 5 HOH HOH 335 A HOH 122 5 HOH HOH 336 A HOH 123 5 HOH HOH 337 A HOH 124 5 HOH HOH 338 A HOH 125 5 HOH HOH 339 A HOH 127 5 HOH HOH 340 A HOH 129 5 HOH HOH 341 A HOH 130 5 HOH HOH 342 A HOH 131 5 HOH HOH 343 A HOH 133 5 HOH HOH 344 A HOH 137 5 HOH HOH 345 A HOH 140 5 HOH HOH 346 A HOH 144 5 HOH HOH 347 A HOH 146 5 HOH HOH 348 A HOH 147 5 HOH HOH 349 A HOH 149 5 HOH HOH 350 A HOH 150 5 HOH HOH 351 A HOH 151 5 HOH HOH 352 A HOH 152 5 HOH HOH 353 A HOH 153 5 HOH HOH 354 A HOH 155 5 HOH HOH 355 A HOH 157 5 HOH HOH 356 A HOH 160 5 HOH HOH 357 A HOH 161 5 HOH HOH 358 A HOH 165 5 HOH HOH 359 A HOH 170 5 HOH HOH 360 A HOH 171 5 HOH HOH 361 A HOH 175 5 HOH HOH 362 A HOH 182 5 HOH HOH 363 A HOH 183 5 HOH HOH 364 A HOH 184 5 HOH HOH 365 A HOH 190 5 HOH HOH 366 A HOH 192 5 HOH HOH 367 A HOH 193 5 HOH HOH 368 A HOH 194 5 HOH HOH 369 A HOH 196 5 HOH HOH 370 A HOH 198 5 HOH HOH 371 A HOH 199 5 HOH HOH 372 A HOH 201 5 HOH HOH 373 A HOH 208 5 HOH HOH 374 A HOH 212 5 HOH HOH 375 A HOH 218 5 HOH HOH 376 A HOH 228 5 HOH HOH 377 A HOH 229 5 HOH HOH 378 A HOH 230 5 HOH HOH 379 A HOH 231 5 HOH HOH 380 A HOH 232 5 HOH HOH 381 A HOH 234 5 HOH HOH 382 A HOH 235 5 HOH HOH 383 A HOH 236 5 HOH HOH 384 A HOH 239 5 HOH HOH 385 A HOH 240 5 HOH HOH 386 A HOH 241 5 HOH HOH 387 A HOH 242 5 HOH HOH 388 A HOH 243 5 HOH HOH 389 A HOH 244 5 HOH HOH 390 A HOH 245 5 HOH HOH 391 A HOH 247 5 HOH HOH 392 A HOH 248 5 HOH HOH 393 A HOH 249 5 HOH HOH 394 A HOH 253 5 HOH HOH 395 A HOH 254 5 HOH HOH 396 A HOH 257 5 HOH HOH 397 A HOH 113 5 HOH HOH 398 A HOH 128 5 HOH HOH 399 A HOH 136 5 HOH HOH 400 A HOH 172 5 HOH HOH 401 A HOH 186 5 HOH HOH 402 A HOH 213 5 HOH HOH 403 A HOH 2 5 HOH HOH 402 B HOH 20 5 HOH HOH 403 B HOH 73 5 HOH HOH 404 B HOH 77 5 HOH HOH 405 B HOH 80 5 HOH HOH 406 B HOH 83 5 HOH HOH 407 B HOH 87 5 HOH HOH 408 B HOH 92 5 HOH HOH 409 B HOH 93 5 HOH HOH 410 B HOH 96 5 HOH HOH 411 B HOH 97 5 HOH HOH 412 B HOH 99 5 HOH HOH 413 B HOH 102 5 HOH HOH 414 B HOH 104 5 HOH HOH 415 B HOH 108 5 HOH HOH 416 B HOH 110 5 HOH HOH 417 B HOH 111 5 HOH HOH 418 B HOH 116 5 HOH HOH 419 B HOH 117 5 HOH HOH 420 B HOH 118 5 HOH HOH 421 B HOH 121 5 HOH HOH 422 B HOH 126 5 HOH HOH 423 B HOH 132 5 HOH HOH 424 B HOH 134 5 HOH HOH 425 B HOH 135 5 HOH HOH 426 B HOH 138 5 HOH HOH 427 B HOH 139 5 HOH HOH 428 B HOH 141 5 HOH HOH 429 B HOH 142 5 HOH HOH 430 B HOH 143 5 HOH HOH 431 B HOH 145 5 HOH HOH 432 B HOH 148 5 HOH HOH 433 B HOH 154 5 HOH HOH 434 B HOH 156 5 HOH HOH 435 B HOH 158 5 HOH HOH 436 B HOH 159 5 HOH HOH 437 B HOH 162 5 HOH HOH 438 B HOH 164 5 HOH HOH 439 B HOH 166 5 HOH HOH 440 B HOH 167 5 HOH HOH 441 B HOH 169 5 HOH HOH 442 B HOH 173 5 HOH HOH 443 B HOH 176 5 HOH HOH 444 B HOH 177 5 HOH HOH 445 B HOH 178 5 HOH HOH 446 B HOH 179 5 HOH HOH 447 B HOH 180 5 HOH HOH 448 B HOH 181 5 HOH HOH 449 B HOH 185 5 HOH HOH 450 B HOH 188 5 HOH HOH 451 B HOH 189 5 HOH HOH 452 B HOH 191 5 HOH HOH 453 B HOH 195 5 HOH HOH 454 B HOH 197 5 HOH HOH 455 B HOH 202 5 HOH HOH 456 B HOH 203 5 HOH HOH 457 B HOH 204 5 HOH HOH 458 B HOH 205 5 HOH HOH 459 B HOH 206 5 HOH HOH 460 B HOH 207 5 HOH HOH 461 B HOH 209 5 HOH HOH 462 B HOH 210 5 HOH HOH 463 B HOH 211 5 HOH HOH 464 B HOH 214 5 HOH HOH 465 B HOH 215 5 HOH HOH 466 B HOH 216 5 HOH HOH 467 B HOH 217 5 HOH HOH 468 B HOH 219 5 HOH HOH 469 B HOH 220 5 HOH HOH 470 B HOH 221 5 HOH HOH 471 B HOH 222 5 HOH HOH 472 B HOH 224 5 HOH HOH 473 B HOH 225 5 HOH HOH 474 B HOH 226 5 HOH HOH 475 B HOH 227 5 HOH HOH 476 B HOH 233 5 HOH HOH 477 B HOH 246 5 HOH HOH 478 B HOH 250 5 HOH HOH 479 B HOH 251 5 HOH HOH 480 B HOH 252 5 HOH HOH 481 B HOH 255 5 HOH HOH 482 B HOH 256 5 HOH HOH 483 B HOH 105 5 HOH HOH 484 B n 1 1 A n 2 2 A n 3 3 A LYS 4 n 4 LYS 4 A PHE 5 n 5 PHE 5 A ASN 6 n 6 ASN 6 A LYS 7 n 7 LYS 7 A GLU 8 n 8 GLU 8 A LEU 9 n 9 LEU 9 A SER 10 n 10 SER 10 A VAL 11 n 11 VAL 11 A ALA 12 n 12 ALA 12 A GLY 13 n 13 GLY 13 A ARG 14 n 14 ARG 14 A GLU 15 n 15 GLU 15 A ILE 16 n 16 ILE 16 A VAL 17 n 17 VAL 17 A THR 18 n 18 THR 18 A LEU 19 n 19 LEU 19 A PRO 20 n 20 PRO 20 A ASN 21 n 21 ASN 21 A LEU 22 n 22 LEU 22 A ASN 23 n 23 ASN 23 A ASP 24 n 24 ASP 24 A PRO 25 n 25 PRO 25 A GLN 26 n 26 GLN 26 A LYS 27 n 27 LYS 27 A LYS 28 n 28 LYS 28 A ALA 29 n 29 ALA 29 A PHE 30 n 30 PHE 30 A ILE 31 n 31 ILE 31 A PHE 32 n 32 PHE 32 A SER 33 n 33 SER 33 A LEU 34 n 34 LEU 34 A TRP 35 n 35 TRP 35 A ASP 36 n 36 ASP 36 A ASP 37 n 37 ASP 37 A PRO 38 n 38 PRO 38 A SER 39 n 39 SER 39 A GLN 40 n 40 GLN 40 A SER 41 n 41 SER 41 A ALA 42 n 42 ALA 42 A ASN 43 n 43 ASN 43 A LEU 44 n 44 LEU 44 A LEU 45 n 45 LEU 45 A ALA 46 n 46 ALA 46 A GLU 47 n 47 GLU 47 A ALA 48 n 48 ALA 48 A LYS 49 n 49 LYS 49 A LYS 50 n 50 LYS 50 A LEU 51 n 51 LEU 51 A ASN 52 n 52 ASN 52 A ASP 53 n 53 ASP 53 A ALA 54 n 54 ALA 54 A GLN 55 n 55 GLN 55 A ALA 56 n 56 ALA 56 A PRO 57 n 57 PRO 57 A LYS 58 n 58 LYS 58 A n 1 1 B n 2 2 B n 3 3 B LYS 4 n 4 LYS 4 B PHE 5 n 5 PHE 5 B ASN 6 n 6 ASN 6 B LYS 7 n 7 LYS 7 B GLU 8 n 8 GLU 8 B GLN 9 n 9 GLN 9 B GLN 10 n 10 GLN 10 B ASN 11 n 11 ASN 11 B ALA 12 n 12 ALA 12 B PHE 13 n 13 PHE 13 B TYR 14 n 14 TYR 14 B GLU 15 n 15 GLU 15 B ILE 16 n 16 ILE 16 B LEU 17 n 17 LEU 17 B HIS 18 n 18 HIS 18 B LEU 19 n 19 LEU 19 B PRO 20 n 20 PRO 20 B ASN 21 n 21 ASN 21 B LEU 22 n 22 LEU 22 B ASN 23 n 23 ASN 23 B GLU 24 n 24 GLU 24 B GLU 25 n 25 GLU 25 B GLN 26 n 26 GLN 26 B ARG 27 n 27 ARG 27 B ASN 28 n 28 ASN 28 B ALA 29 n 29 ALA 29 B PHE 30 n 30 PHE 30 B ILE 31 n 31 ILE 31 B GLN 32 n 32 GLN 32 B SER 33 n 33 SER 33 B LEU 34 n 34 LEU 34 B LYS 35 n 35 LYS 35 B ASP 36 n 36 ASP 36 B ASP 37 n 37 ASP 37 B PRO 38 n 38 PRO 38 B SER 39 n 39 SER 39 B GLN 40 n 40 GLN 40 B SER 41 n 41 SER 41 B ALA 42 n 42 ALA 42 B ASN 43 n 43 ASN 43 B LEU 44 n 44 LEU 44 B LEU 45 n 45 LEU 45 B ALA 46 n 46 ALA 46 B GLU 47 n 47 GLU 47 B ALA 48 n 48 ALA 48 B LYS 49 n 49 LYS 49 B LYS 50 n 50 LYS 50 B LEU 51 n 51 LEU 51 B ASN 52 n 52 ASN 52 B ASP 53 n 53 ASP 53 B ALA 54 n 54 ALA 54 B GLN 55 n 55 GLN 55 B ALA 56 n 56 ALA 56 B PRO 57 n 57 PRO 57 B n 58 58 B author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 4 tetrameric 2350 -55 6280 6360 -128 10890 B GLU 25 B OE1 GLU 25 1_555 B MG 401 G MG MG 1_555 B SO4 302 E O1 SO4 1_555 130.5 B GLU 25 B OE1 GLU 25 1_555 B MG 401 G MG MG 1_555 B SO4 302 E O3 SO4 1_555 92.9 B SO4 302 E O1 SO4 1_555 B MG 401 G MG MG 1_555 B SO4 302 E O3 SO4 1_555 50.6 B GLU 25 B OE1 GLU 25 1_555 B MG 401 G MG MG 1_555 B SO4 303 F S SO4 1_555 116.3 B SO4 302 E O1 SO4 1_555 B MG 401 G MG MG 1_555 B SO4 303 F S SO4 1_555 105.9 B SO4 302 E O3 SO4 1_555 B MG 401 G MG MG 1_555 B SO4 303 F S SO4 1_555 150.6 B GLU 25 B OE1 GLU 25 1_555 B MG 401 G MG MG 1_555 B SO4 303 F O3 SO4 1_555 103.7 B SO4 302 E O1 SO4 1_555 B MG 401 G MG MG 1_555 B SO4 303 F O3 SO4 1_555 125.8 B SO4 302 E O3 SO4 1_555 B MG 401 G MG MG 1_555 B SO4 303 F O3 SO4 1_555 141.8 B SO4 303 F S SO4 1_555 B MG 401 G MG MG 1_555 B SO4 303 F O3 SO4 1_555 32.3 B GLU 25 B OE1 GLU 25 1_555 B MG 401 G MG MG 1_555 B SO4 303 F O4 SO4 1_555 141.9 B SO4 302 E O1 SO4 1_555 B MG 401 G MG MG 1_555 B SO4 303 F O4 SO4 1_555 73.3 B SO4 302 E O3 SO4 1_555 B MG 401 G MG MG 1_555 B SO4 303 F O4 SO4 1_555 121.6 B SO4 303 F S SO4 1_555 B MG 401 G MG MG 1_555 B SO4 303 F O4 SO4 1_555 32.7 B SO4 303 F O3 SO4 1_555 B MG 401 G MG MG 1_555 B SO4 303 F O4 SO4 1_555 60.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_555 x,x-y,-z+1/6 crystal symmetry operation 0.0000000000 0.0000000000 25.9581666667 1 A VAL 1 A VAL 1 1 Y 1 A ASP 2 A ASP 2 1 Y 1 A ASN 3 A ASN 3 1 Y 1 B VAL 1 B VAL 1 1 Y 1 B ASP 2 B ASP 2 1 Y 1 B ASN 3 B ASN 3 1 Y 1 B LYS 58 B LYS 58 1 Y 1 A PHE 5 -58.74 9.45 1 A GLN 40 -98.74 34.06 1 B ASP 37 -115.11 76.01 1 B PRO 38 -41.80 -16.94 0.256 0.224 0.225 0.225 2.3 20 327 6865 6865 RANDOM 1 0 MOLECULAR REPLACEMENT Polyserine model of PDB entry 1DEE, chain G Engh & Huber 2.3 20 182 1071 21 0 868 1.165 0.006 51.3 2.3 30 1LP1 6899 6899 0 0 0.05 1 8.3 99.8 0.296 2.30 2.38 99.8 data reduction DENZO data scaling SCALEPACK phasing EPMR refinement CNS Protein Z in complex with an in vitro selected affibody 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N 5 N N A LYS 4 A LYS 4 HELX_P A THR 18 A THR 18 1 1 15 A ASN 23 A ASN 23 HELX_P A ASP 37 A ASP 37 1 2 15 A GLN 40 A GLN 40 HELX_P A GLN 55 A GLN 55 1 3 16 B PHE 5 B PHE 5 HELX_P B LEU 17 B LEU 17 1 4 13 B ASN 23 B ASN 23 HELX_P B ASP 37 B ASP 37 1 5 15 B GLN 40 B GLN 40 HELX_P B GLN 55 B GLN 55 1 6 16 metalc 2.609 B GLU 25 B OE1 GLU 25 1_555 B MG 401 G MG MG 1_555 metalc 2.903 B SO4 302 E O1 SO4 1_555 B MG 401 G MG MG 1_555 metalc 2.780 B SO4 302 E O3 SO4 1_555 B MG 401 G MG MG 1_555 metalc 2.746 B SO4 303 F S SO4 1_555 B MG 401 G MG MG 1_555 metalc 2.531 B SO4 303 F O3 SO4 1_555 B MG 401 G MG MG 1_555 metalc 2.316 B SO4 303 F O4 SO4 1_555 B MG 401 G MG MG 1_555 IMMUNE SYSTEM in vitro evolved, protein-protein complex, three-helix bundle, affibody, IMMUNE SYSTEM SPA2_STAAU UNP 2 212 P38507 ADNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQAPK 1LP1 PDB 1 1LP1 212 269 1LP1 1 58 P38507 B 1 1 58 1 58 1LP1 1 58 1LP1 A 2 1 58 1 ALA engineered mutation VAL 1 1LP1 B P38507 UNP 212 1 1 GLY engineered mutation ALA 29 1LP1 B P38507 UNP 240 29 BINDING SITE FOR RESIDUE SO4 A 301 A SO4 301 Software 5 BINDING SITE FOR RESIDUE SO4 B 302 B SO4 302 Software 5 BINDING SITE FOR RESIDUE SO4 B 303 B SO4 303 Software 9 BINDING SITE FOR RESIDUE SO4 A 304 A SO4 304 Software 5 BINDING SITE FOR RESIDUE MG B 401 B MG 401 Software 4 A ARG 14 A ARG 14 5 1_555 A HOH 317 H HOH 5 1_555 A HOH 322 H HOH 5 1_555 A HOH 386 H HOH 5 1_555 B ARG 27 B ARG 27 5 1_555 B ASN 23 B ASN 23 5 1_555 B GLU 24 B GLU 24 5 1_555 B SO4 303 F SO4 5 1_555 B MG 401 G MG 5 1_555 B HOH 439 I HOH 5 1_555 A ASP 36 A ASP 36 9 8_565 A HOH 336 H HOH 9 8_565 B ASN 6 B ASN 6 9 8_565 B GLN 10 B GLN 10 9 8_565 B GLU 25 B GLU 25 9 1_555 B SO4 302 E SO4 9 1_555 B MG 401 G MG 9 1_555 B HOH 414 I HOH 9 1_555 B HOH 444 I HOH 9 1_555 A ASN 23 A ASN 23 5 1_555 A ASP 24 A ASP 24 5 1_555 A PRO 25 A PRO 25 5 1_555 A HOH 340 H HOH 5 8_665 A HOH 403 H HOH 5 1_555 B ASN 23 B ASN 23 4 1_555 B GLU 25 B GLU 25 4 1_555 B SO4 302 E SO4 4 1_555 B SO4 303 F SO4 4 1_555 178 P 61 2 2