0.026938
-0.000000
0.007333
0.000000
0.012739
-0.000000
0.000000
0.000000
0.024263
0.00000
0.00000
0.00000
Kurinov, I.V.
Rajamohan, F.
Uckun, F.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.
105.228
90.
37.122
78.498
42.715
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H12 N5 O6 P
329.206
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
CYCLIC AMP; CAMP
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
R
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
S
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
S
C
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
N
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
S
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
R
C
N
322
N
O
N
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
N
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
N
372
N
O
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
N
390
N
C
N
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
Y
92
N
sing
Y
93
N
sing
Y
94
N
doub
N
95
N
sing
Y
96
N
sing
Y
97
N
sing
Y
98
N
doub
N
99
N
sing
Y
100
N
doub
N
101
N
sing
N
102
N
sing
Y
103
N
sing
Y
104
N
doub
N
105
N
sing
Y
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
Y
264
N
doub
Y
265
N
sing
Y
266
N
sing
N
267
N
sing
Y
268
N
doub
N
269
N
sing
Y
270
N
doub
N
271
N
sing
Y
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
Y
333
N
doub
Y
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
GE
Arzneimittelforschung
0004-4172
54
692
702
15553110
High resolution X-ray structure and potent anti-HIV activity of recombinant dianthin antiviral protein.
2004
10.2210/pdb1lpc/pdb
pdb_00001lpc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
290.00
1
IMAGE PLATE
2000-12-23
RIGAKU RAXIS IV
Yale mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RU300
28603.588
DIANTHIN 30
3.2.2.22
1
man
polymer
329.206
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
1
syn
non-polymer
18.015
water
175
nat
water
Antiviral protein DAP-30, rRNA N-glycosylase, rRNA N-glycosidase, Ribosome-inactivating protein
no
no
ATAYTLNLANPSASQYSSFLDQIRNNVRDTSLIYGGTDVEVIGAPSTTDKFLRLNFQGPRGTVSLGLRRENLYVVAYLAM
DNANVNRAYYFKNQITSAELTALFPEVVVANQKQLEYGEDYQAIEKNAKITTGDQSRKELGLGINLLITMIDGVNKKVRV
VKDEARFLLIAIQMTAEAARFRYIQNLVTKNFPNKFDSENKVIQFQVSWSKISTAIFGDCKNGVFNKDYDFGFGKVRQAK
DLQMGLLKYLGRPK
ATAYTLNLANPSASQYSSFLDQIRNNVRDTSLIYGGTDVEVIGAPSTTDKFLRLNFQGPRGTVSLGLRRENLYVVAYLAM
DNANVNRAYYFKNQITSAELTALFPEVVVANQKQLEYGEDYQAIEKNAKITTGDQSRKELGLGINLLITMIDGVNKKVRV
VKDEARFLLIAIQMTAEAARFRYIQNLVTKNFPNKFDSENKVIQFQVSWSKISTAIFGDCKNGVFNKDYDFGFGKVRQAK
DLQMGLLKYLGRPK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
clove pink
Dianthus
Escherichia
sample
3570
Dianthus caryophyllus
562
Escherichia coli
1
2.10
41.41
VAPOR DIFFUSION, HANGING DROP
8
26% PEG3350, 0.1M CaCl2, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-05-11
1
1
2008-04-28
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
HIGH RESOLUTION STRUCTURE OF RECOMBINANT DIANTHIN ANTIVIRAL PROTEIN-POTENT ANTI-HIV AGENT
High Resolution Structure of Recombinant Dianthin Antiviral Protein-Agent (complex with adenine)
RCSB
Y
RCSB
2002-05-07
REL
CMP
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
HOH
water
1LP8
PDB ENTRY 1LP8
PDB
experimental model
CAP
901
2
CMP
CMP
901
A
WAT
1
3
HOH
HOH
902
A
WAT
2
3
HOH
HOH
903
A
WAT
3
3
HOH
HOH
904
A
WAT
4
3
HOH
HOH
905
A
WAT
5
3
HOH
HOH
906
A
WAT
8
3
HOH
HOH
907
A
WAT
9
3
HOH
HOH
908
A
WAT
10
3
HOH
HOH
909
A
WAT
11
3
HOH
HOH
910
A
WAT
13
3
HOH
HOH
911
A
WAT
14
3
HOH
HOH
912
A
WAT
15
3
HOH
HOH
913
A
WAT
17
3
HOH
HOH
914
A
WAT
18
3
HOH
HOH
915
A
WAT
19
3
HOH
HOH
916
A
WAT
20
3
HOH
HOH
917
A
WAT
22
3
HOH
HOH
918
A
WAT
23
3
HOH
HOH
919
A
WAT
24
3
HOH
HOH
920
A
WAT
26
3
HOH
HOH
921
A
WAT
27
3
HOH
HOH
922
A
WAT
28
3
HOH
HOH
923
A
WAT
29
3
HOH
HOH
924
A
WAT
30
3
HOH
HOH
925
A
WAT
31
3
HOH
HOH
926
A
WAT
32
3
HOH
HOH
927
A
WAT
34
3
HOH
HOH
928
A
WAT
35
3
HOH
HOH
929
A
WAT
36
3
HOH
HOH
930
A
WAT
37
3
HOH
HOH
931
A
WAT
39
3
HOH
HOH
932
A
WAT
41
3
HOH
HOH
933
A
WAT
42
3
HOH
HOH
934
A
WAT
44
3
HOH
HOH
935
A
WAT
46
3
HOH
HOH
936
A
WAT
47
3
HOH
HOH
937
A
WAT
49
3
HOH
HOH
938
A
WAT
52
3
HOH
HOH
939
A
WAT
60
3
HOH
HOH
940
A
WAT
78
3
HOH
HOH
941
A
WAT
84
3
HOH
HOH
942
A
WAT
96
3
HOH
HOH
943
A
WAT
107
3
HOH
HOH
944
A
WAT
126
3
HOH
HOH
945
A
WAT
181
3
HOH
HOH
946
A
WAT
248
3
HOH
HOH
947
A
WAT
293
3
HOH
HOH
948
A
WAT
324
3
HOH
HOH
949
A
WAT
501
3
HOH
HOH
950
A
WAT
510
3
HOH
HOH
951
A
WAT
513
3
HOH
HOH
952
A
WAT
515
3
HOH
HOH
953
A
WAT
520
3
HOH
HOH
954
A
WAT
525
3
HOH
HOH
955
A
WAT
557
3
HOH
HOH
956
A
WAT
707
3
HOH
HOH
957
A
WAT
506
3
HOH
HOH
958
A
WAT
513
3
HOH
HOH
959
A
WAT
515
3
HOH
HOH
960
A
WAT
517
3
HOH
HOH
961
A
WAT
518
3
HOH
HOH
962
A
WAT
522
3
HOH
HOH
963
A
WAT
523
3
HOH
HOH
964
A
WAT
524
3
HOH
HOH
965
A
WAT
525
3
HOH
HOH
966
A
WAT
529
3
HOH
HOH
967
A
WAT
530
3
HOH
HOH
968
A
WAT
531
3
HOH
HOH
969
A
WAT
533
3
HOH
HOH
970
A
WAT
534
3
HOH
HOH
971
A
WAT
535
3
HOH
HOH
972
A
WAT
536
3
HOH
HOH
973
A
WAT
538
3
HOH
HOH
974
A
WAT
540
3
HOH
HOH
975
A
WAT
541
3
HOH
HOH
976
A
WAT
545
3
HOH
HOH
977
A
WAT
547
3
HOH
HOH
978
A
WAT
550
3
HOH
HOH
979
A
WAT
551
3
HOH
HOH
980
A
WAT
553
3
HOH
HOH
981
A
WAT
559
3
HOH
HOH
982
A
WAT
560
3
HOH
HOH
983
A
WAT
561
3
HOH
HOH
984
A
WAT
562
3
HOH
HOH
985
A
WAT
566
3
HOH
HOH
986
A
WAT
567
3
HOH
HOH
987
A
WAT
569
3
HOH
HOH
988
A
WAT
570
3
HOH
HOH
989
A
WAT
571
3
HOH
HOH
990
A
WAT
574
3
HOH
HOH
991
A
WAT
575
3
HOH
HOH
992
A
WAT
576
3
HOH
HOH
993
A
WAT
577
3
HOH
HOH
994
A
WAT
578
3
HOH
HOH
995
A
WAT
579
3
HOH
HOH
996
A
WAT
581
3
HOH
HOH
997
A
WAT
582
3
HOH
HOH
998
A
WAT
583
3
HOH
HOH
999
A
WAT
585
3
HOH
HOH
1000
A
WAT
588
3
HOH
HOH
1001
A
WAT
589
3
HOH
HOH
1002
A
WAT
590
3
HOH
HOH
1003
A
WAT
591
3
HOH
HOH
1004
A
WAT
592
3
HOH
HOH
1005
A
WAT
593
3
HOH
HOH
1006
A
WAT
594
3
HOH
HOH
1007
A
WAT
596
3
HOH
HOH
1008
A
WAT
599
3
HOH
HOH
1009
A
WAT
600
3
HOH
HOH
1010
A
WAT
603
3
HOH
HOH
1011
A
WAT
604
3
HOH
HOH
1012
A
WAT
606
3
HOH
HOH
1013
A
WAT
607
3
HOH
HOH
1014
A
WAT
608
3
HOH
HOH
1015
A
WAT
610
3
HOH
HOH
1016
A
WAT
611
3
HOH
HOH
1017
A
WAT
612
3
HOH
HOH
1018
A
WAT
614
3
HOH
HOH
1019
A
WAT
616
3
HOH
HOH
1020
A
WAT
617
3
HOH
HOH
1021
A
WAT
623
3
HOH
HOH
1022
A
WAT
624
3
HOH
HOH
1023
A
WAT
625
3
HOH
HOH
1024
A
WAT
626
3
HOH
HOH
1025
A
WAT
629
3
HOH
HOH
1026
A
WAT
631
3
HOH
HOH
1027
A
WAT
632
3
HOH
HOH
1028
A
WAT
633
3
HOH
HOH
1029
A
WAT
634
3
HOH
HOH
1030
A
WAT
635
3
HOH
HOH
1031
A
WAT
636
3
HOH
HOH
1032
A
WAT
637
3
HOH
HOH
1033
A
WAT
638
3
HOH
HOH
1034
A
WAT
639
3
HOH
HOH
1035
A
WAT
640
3
HOH
HOH
1036
A
WAT
641
3
HOH
HOH
1037
A
WAT
642
3
HOH
HOH
1038
A
WAT
643
3
HOH
HOH
1039
A
WAT
646
3
HOH
HOH
1040
A
WAT
647
3
HOH
HOH
1041
A
WAT
648
3
HOH
HOH
1042
A
WAT
649
3
HOH
HOH
1043
A
WAT
650
3
HOH
HOH
1044
A
WAT
652
3
HOH
HOH
1045
A
WAT
653
3
HOH
HOH
1046
A
WAT
654
3
HOH
HOH
1047
A
WAT
655
3
HOH
HOH
1048
A
WAT
657
3
HOH
HOH
1049
A
WAT
658
3
HOH
HOH
1050
A
WAT
660
3
HOH
HOH
1051
A
WAT
661
3
HOH
HOH
1052
A
WAT
662
3
HOH
HOH
1053
A
WAT
663
3
HOH
HOH
1054
A
WAT
664
3
HOH
HOH
1055
A
WAT
665
3
HOH
HOH
1056
A
WAT
666
3
HOH
HOH
1057
A
WAT
668
3
HOH
HOH
1058
A
WAT
669
3
HOH
HOH
1059
A
WAT
670
3
HOH
HOH
1060
A
WAT
671
3
HOH
HOH
1061
A
WAT
673
3
HOH
HOH
1062
A
WAT
677
3
HOH
HOH
1063
A
WAT
678
3
HOH
HOH
1064
A
WAT
679
3
HOH
HOH
1065
A
WAT
680
3
HOH
HOH
1066
A
WAT
681
3
HOH
HOH
1067
A
WAT
682
3
HOH
HOH
1068
A
WAT
683
3
HOH
HOH
1069
A
WAT
684
3
HOH
HOH
1070
A
WAT
685
3
HOH
HOH
1071
A
WAT
689
3
HOH
HOH
1072
A
WAT
690
3
HOH
HOH
1073
A
WAT
695
3
HOH
HOH
1074
A
WAT
698
3
HOH
HOH
1075
A
WAT
700
3
HOH
HOH
1076
A
ALA
1
n
1
ALA
1
A
THR
2
n
2
THR
2
A
ALA
3
n
3
ALA
3
A
TYR
4
n
4
TYR
4
A
THR
5
n
5
THR
5
A
LEU
6
n
6
LEU
6
A
ASN
7
n
7
ASN
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ASN
10
n
10
ASN
10
A
PRO
11
n
11
PRO
11
A
SER
12
n
12
SER
12
A
ALA
13
n
13
ALA
13
A
SER
14
n
14
SER
14
A
GLN
15
n
15
GLN
15
A
TYR
16
n
16
TYR
16
A
SER
17
n
17
SER
17
A
SER
18
n
18
SER
18
A
PHE
19
n
19
PHE
19
A
LEU
20
n
20
LEU
20
A
ASP
21
n
21
ASP
21
A
GLN
22
n
22
GLN
22
A
ILE
23
n
23
ILE
23
A
ARG
24
n
24
ARG
24
A
ASN
25
n
25
ASN
25
A
ASN
26
n
26
ASN
26
A
VAL
27
n
27
VAL
27
A
ARG
28
n
28
ARG
28
A
ASP
29
n
29
ASP
29
A
THR
30
n
30
THR
30
A
SER
31
n
31
SER
31
A
LEU
32
n
32
LEU
32
A
ILE
33
n
33
ILE
33
A
TYR
34
n
34
TYR
34
A
GLY
35
n
35
GLY
35
A
GLY
36
n
36
GLY
36
A
THR
37
n
37
THR
37
A
ASP
38
n
38
ASP
38
A
VAL
39
n
39
VAL
39
A
GLU
40
n
40
GLU
40
A
VAL
41
n
41
VAL
41
A
ILE
42
n
42
ILE
42
A
GLY
43
n
43
GLY
43
A
ALA
44
n
44
ALA
44
A
PRO
45
n
45
PRO
45
A
SER
46
n
46
SER
46
A
THR
47
n
47
THR
47
A
THR
48
n
48
THR
48
A
ASP
49
n
49
ASP
49
A
LYS
50
n
50
LYS
50
A
PHE
51
n
51
PHE
51
A
LEU
52
n
52
LEU
52
A
ARG
53
n
53
ARG
53
A
LEU
54
n
54
LEU
54
A
ASN
55
n
55
ASN
55
A
PHE
56
n
56
PHE
56
A
GLN
57
n
57
GLN
57
A
GLY
58
n
58
GLY
58
A
PRO
59
n
59
PRO
59
A
ARG
60
n
60
ARG
60
A
GLY
61
n
61
GLY
61
A
THR
62
n
62
THR
62
A
VAL
63
n
63
VAL
63
A
SER
64
n
64
SER
64
A
LEU
65
n
65
LEU
65
A
GLY
66
n
66
GLY
66
A
LEU
67
n
67
LEU
67
A
ARG
68
n
68
ARG
68
A
ARG
69
n
69
ARG
69
A
GLU
70
n
70
GLU
70
A
ASN
71
n
71
ASN
71
A
LEU
72
n
72
LEU
72
A
TYR
73
n
73
TYR
73
A
VAL
74
n
74
VAL
74
A
VAL
75
n
75
VAL
75
A
ALA
76
n
76
ALA
76
A
TYR
77
n
77
TYR
77
A
LEU
78
n
78
LEU
78
A
ALA
79
n
79
ALA
79
A
MET
80
n
80
MET
80
A
ASP
81
n
81
ASP
81
A
ASN
82
n
82
ASN
82
A
ALA
83
n
83
ALA
83
A
ASN
84
n
84
ASN
84
A
VAL
85
n
85
VAL
85
A
ASN
86
n
86
ASN
86
A
ARG
87
n
87
ARG
87
A
ALA
88
n
88
ALA
88
A
TYR
89
n
89
TYR
89
A
TYR
90
n
90
TYR
90
A
PHE
91
n
91
PHE
91
A
LYS
92
n
92
LYS
92
A
ASN
93
n
93
ASN
93
A
GLN
94
n
94
GLN
94
A
ILE
95
n
95
ILE
95
A
THR
96
n
96
THR
96
A
SER
97
n
97
SER
97
A
ALA
98
n
98
ALA
98
A
GLU
99
n
99
GLU
99
A
LEU
100
n
100
LEU
100
A
THR
101
n
101
THR
101
A
ALA
102
n
102
ALA
102
A
LEU
103
n
103
LEU
103
A
PHE
104
n
104
PHE
104
A
PRO
105
n
105
PRO
105
A
GLU
106
n
106
GLU
106
A
VAL
107
n
107
VAL
107
A
VAL
108
n
108
VAL
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
ASN
111
n
111
ASN
111
A
GLN
112
n
112
GLN
112
A
LYS
113
n
113
LYS
113
A
GLN
114
n
114
GLN
114
A
LEU
115
n
115
LEU
115
A
GLU
116
n
116
GLU
116
A
TYR
117
n
117
TYR
117
A
GLY
118
n
118
GLY
118
A
GLU
119
n
119
GLU
119
A
ASP
120
n
120
ASP
120
A
TYR
121
n
121
TYR
121
A
GLN
122
n
122
GLN
122
A
ALA
123
n
123
ALA
123
A
ILE
124
n
124
ILE
124
A
GLU
125
n
125
GLU
125
A
LYS
126
n
126
LYS
126
A
ASN
127
n
127
ASN
127
A
ALA
128
n
128
ALA
128
A
LYS
129
n
129
LYS
129
A
ILE
130
n
130
ILE
130
A
THR
131
n
131
THR
131
A
THR
132
n
132
THR
132
A
GLY
133
n
133
GLY
133
A
ASP
134
n
134
ASP
134
A
GLN
135
n
135
GLN
135
A
SER
136
n
136
SER
136
A
ARG
137
n
137
ARG
137
A
LYS
138
n
138
LYS
138
A
GLU
139
n
139
GLU
139
A
LEU
140
n
140
LEU
140
A
GLY
141
n
141
GLY
141
A
LEU
142
n
142
LEU
142
A
GLY
143
n
143
GLY
143
A
ILE
144
n
144
ILE
144
A
ASN
145
n
145
ASN
145
A
LEU
146
n
146
LEU
146
A
LEU
147
n
147
LEU
147
A
ILE
148
n
148
ILE
148
A
THR
149
n
149
THR
149
A
MET
150
n
150
MET
150
A
ILE
151
n
151
ILE
151
A
ASP
152
n
152
ASP
152
A
GLY
153
n
153
GLY
153
A
VAL
154
n
154
VAL
154
A
ASN
155
n
155
ASN
155
A
LYS
156
n
156
LYS
156
A
LYS
157
n
157
LYS
157
A
VAL
158
n
158
VAL
158
A
ARG
159
n
159
ARG
159
A
VAL
160
n
160
VAL
160
A
VAL
161
n
161
VAL
161
A
LYS
162
n
162
LYS
162
A
ASP
163
n
163
ASP
163
A
GLU
164
n
164
GLU
164
A
ALA
165
n
165
ALA
165
A
ARG
166
n
166
ARG
166
A
PHE
167
n
167
PHE
167
A
LEU
168
n
168
LEU
168
A
LEU
169
n
169
LEU
169
A
ILE
170
n
170
ILE
170
A
ALA
171
n
171
ALA
171
A
ILE
172
n
172
ILE
172
A
GLN
173
n
173
GLN
173
A
MET
174
n
174
MET
174
A
THR
175
n
175
THR
175
A
ALA
176
n
176
ALA
176
A
GLU
177
n
177
GLU
177
A
ALA
178
n
178
ALA
178
A
ALA
179
n
179
ALA
179
A
ARG
180
n
180
ARG
180
A
PHE
181
n
181
PHE
181
A
ARG
182
n
182
ARG
182
A
TYR
183
n
183
TYR
183
A
ILE
184
n
184
ILE
184
A
GLN
185
n
185
GLN
185
A
ASN
186
n
186
ASN
186
A
LEU
187
n
187
LEU
187
A
VAL
188
n
188
VAL
188
A
THR
189
n
189
THR
189
A
LYS
190
n
190
LYS
190
A
ASN
191
n
191
ASN
191
A
PHE
192
n
192
PHE
192
A
PRO
193
n
193
PRO
193
A
ASN
194
n
194
ASN
194
A
LYS
195
n
195
LYS
195
A
PHE
196
n
196
PHE
196
A
ASP
197
n
197
ASP
197
A
SER
198
n
198
SER
198
A
GLU
199
n
199
GLU
199
A
ASN
200
n
200
ASN
200
A
LYS
201
n
201
LYS
201
A
VAL
202
n
202
VAL
202
A
ILE
203
n
203
ILE
203
A
GLN
204
n
204
GLN
204
A
PHE
205
n
205
PHE
205
A
GLN
206
n
206
GLN
206
A
VAL
207
n
207
VAL
207
A
SER
208
n
208
SER
208
A
TRP
209
n
209
TRP
209
A
SER
210
n
210
SER
210
A
LYS
211
n
211
LYS
211
A
ILE
212
n
212
ILE
212
A
SER
213
n
213
SER
213
A
THR
214
n
214
THR
214
A
ALA
215
n
215
ALA
215
A
ILE
216
n
216
ILE
216
A
PHE
217
n
217
PHE
217
A
GLY
218
n
218
GLY
218
A
ASP
219
n
219
ASP
219
A
CYS
220
n
220
CYS
220
A
LYS
221
n
221
LYS
221
A
ASN
222
n
222
ASN
222
A
GLY
223
n
223
GLY
223
A
VAL
224
n
224
VAL
224
A
PHE
225
n
225
PHE
225
A
ASN
226
n
226
ASN
226
A
LYS
227
n
227
LYS
227
A
ASP
228
n
228
ASP
228
A
TYR
229
n
229
TYR
229
A
ASP
230
n
230
ASP
230
A
PHE
231
n
231
PHE
231
A
GLY
232
n
232
GLY
232
A
PHE
233
n
233
PHE
233
A
GLY
234
n
234
GLY
234
A
LYS
235
n
235
LYS
235
A
VAL
236
n
236
VAL
236
A
ARG
237
n
237
ARG
237
A
GLN
238
n
238
GLN
238
A
ALA
239
n
239
ALA
239
A
LYS
240
n
240
LYS
240
A
ASP
241
n
241
ASP
241
A
LEU
242
n
242
LEU
242
A
GLN
243
n
243
GLN
243
A
MET
244
n
244
MET
244
A
GLY
245
n
245
GLY
245
A
LEU
246
n
246
LEU
246
A
LEU
247
n
247
LEU
247
A
LYS
248
n
248
LYS
248
A
TYR
249
n
249
TYR
249
A
LEU
250
n
250
LEU
250
A
GLY
251
n
251
GLY
251
A
ARG
252
n
252
ARG
252
A
PRO
253
n
253
PRO
253
A
LYS
254
n
254
LYS
254
A
0.195
0.19
0.24
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
6
A
N
LEU
6
A
O
ASN
55
A
O
ASN
55
A
N
PHE
56
A
N
PHE
56
A
O
VAL
63
A
O
VAL
63
A
N
GLY
66
A
N
GLY
66
A
O
VAL
75
A
O
VAL
75
A
N
TYR
77
A
N
TYR
77
A
O
TYR
89
A
O
TYR
89
A
N
ALA
88
A
N
ALA
88
A
O
LYS
113
A
O
LYS
113
A
N
LYS
221
A
N
LYS
221
A
O
VAL
224
A
O
VAL
224
A
N
TYR
229
A
N
TYR
229
A
O
VAL
236
A
O
VAL
236
1
A
ASN
93
-81.11
30.83
1
A
THR
175
-116.24
-77.23
1
A
ASP
219
-141.60
39.40
16.8
0.24
0.19
0.195
0.195
1.70
8.00
2398
24193
24002
10
RANDOM
1
Isotropic
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 1LP8
Engh & Huber
1.70
8.00
175
2213
22
0
2016
0.005
1.145
0.984
1.70
20.00
1LPC
26030
24357
0.00
0.00
0.044
1
53.7
93.6
0.097
1.70
1.76
81.2
data reduction
DENZO
data scaling
SCALEPACK
model building
X-PLOR
refinement
X-PLOR
3.851
phasing
X-PLOR
HIGH RESOLUTION STRUCTURE OF RECOMBINANT DIANTHIN ANTIVIRAL PROTEIN-POTENT ANTI-HIV AGENT (COMPLEX WITH CYCLIC AMP)
1
N
N
2
N
N
3
N
N
A
SER
12
A
SER
12
HELX_P
A
ARG
28
A
ARG
28
1
1
17
A
LYS
92
A
LYS
92
HELX_P
A
ILE
95
A
ILE
95
5
2
4
A
THR
96
A
THR
96
HELX_P
A
PHE
104
A
PHE
104
1
3
9
A
VAL
108
A
VAL
108
HELX_P
A
ALA
110
A
ALA
110
5
4
3
A
ASP
120
A
ASP
120
HELX_P
A
LYS
129
A
LYS
129
1
5
10
A
SER
136
A
SER
136
HELX_P
A
GLY
141
A
GLY
141
5
6
6
A
GLY
143
A
GLY
143
HELX_P
A
GLY
153
A
GLY
153
1
7
11
A
VAL
160
A
VAL
160
HELX_P
A
THR
175
A
THR
175
1
8
16
A
THR
175
A
THR
175
HELX_P
A
PHE
181
A
PHE
181
1
9
7
A
PHE
181
A
PHE
181
HELX_P
A
ASN
191
A
ASN
191
1
10
11
A
GLU
199
A
GLU
199
HELX_P
A
SER
208
A
SER
208
1
11
10
A
SER
208
A
SER
208
HELX_P
A
ASP
219
A
ASP
219
1
12
12
A
LYS
240
A
LYS
240
HELX_P
A
GLN
243
A
GLN
243
5
13
4
ANTIVIRAL PROTEIN
DIANTHIN ANTIVIRAL PROTEIN, RIBOSOME INACTIVATING PROTEIN, ANTI-HIV AGENT, HIV-1 INTEGRASE INHIBITOR, POLYNUCLEOTIDE:ADENOSINE GLYCOSIDASE, ANTIVIRAL PROTEIN
A
PHE
192
A
PHE
192
1
A
PRO
193
A
PRO
193
-0.15
RIP0_DIACA
UNP
1
24
P24476
ATAYTLNLANPSASQYSSFLDQIRNNVRDTSLIYGGTDVEVIGAPSTTDKFLRLNFQGPRGTVSLGLRRENLYVVAYLAM
DNANVNRAYYFKNQITSAELTALFPEVVVANQKQLEYGEDYQAIEKNAKITTGDQSRKELGLGINLLITMIDGVNKKVRV
VKDEARFLLIAIQMTAEAARFRYIQNLVTKNFPNKFDSENKVIQFQVSWSKISTAIFGDCKNGVFNKDYDFGFGKVRQAK
DLQMGLLKYLGRPK
24
277
1LPC
1
254
P24476
A
1
1
254
6
3
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ALA
3
A
ALA
3
A
ASN
7
A
ASN
7
A
PHE
51
A
PHE
51
A
GLY
58
A
GLY
58
A
GLY
61
A
GLY
61
A
ARG
68
A
ARG
68
A
VAL
74
A
VAL
74
A
MET
80
A
MET
80
A
ASN
86
A
ASN
86
A
TYR
90
A
TYR
90
A
GLN
112
A
GLN
112
A
GLN
114
A
GLN
114
A
CYS
220
A
CYS
220
A
LYS
221
A
LYS
221
A
VAL
224
A
VAL
224
A
ASP
230
A
ASP
230
A
LYS
235
A
LYS
235
A
GLN
238
A
GLN
238
BINDING SITE FOR RESIDUE CMP A 901
A
CMP
901
Software
13
A
LEU
72
A
LEU
72
13
1_555
A
TYR
73
A
TYR
73
13
1_555
A
VAL
74
A
VAL
74
13
1_555
A
GLU
119
A
GLU
119
13
1_555
A
TYR
121
A
TYR
121
13
1_555
A
ILE
172
A
ILE
172
13
1_555
A
GLU
177
A
GLU
177
13
1_555
A
ARG
180
A
ARG
180
13
1_555
A
GLN
206
A
GLN
206
13
1_555
A
VAL
207
A
VAL
207
13
1_555
A
TRP
209
A
TRP
209
13
1_555
A
SER
210
A
SER
210
13
1_555
A
HOH
950
C
HOH
13
1_555
4
P 1 21 1