1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Dai, Q.-H. Tommos, C. Fuentes, E.J. Blomberg, M. Dutton, P.L. Wand, A.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Am.Chem.Soc. JACSAT 0004 0002-7863 124 10952 10953 10.1021/ja0264201 12224922 Structure of a De Novo Designed Protein Model of Radical Enzymes 2002 US Biochemistry BICHAW 0033 0006-2960 38 9495 9507 10.1021/bi990609g De novo proteins as models of radical enzymes 1999 10.2210/pdb1lq7/pdb pdb_00001lq7 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 Protein model for tryptophanyl radical 7562.899 Alpha3W 1 man polymer no no GSRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL GSRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia sample de novo design/synthetic gene: gene generated using overlapping PCR method from synthetic oligos 562 Escherichia coli DH5alpha PLASMID pET32 database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2002-06-05 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession sequence an appropriate sequence database reference was not available at the time of processing. RCSB Y RCSB 2002-05-09 REL lowest refinement function penalty, best chemical shift agreement 30 16 3D_13C-separated_NOESY 3D_13C-separated_NOESY 4D_13C-separated_NOESY HNHA 70 mM 5.5 ambient 301 K 70 mM 5.5 ambient 301 K 1130 NOEs, 43 phi restraints torsion angle dynamics 16 chemical shift 0.85 mM U-15N,13C-a3w, 20 mM acetate, 50 mM KCl 92% H2O/8% D2O 0.85 mM U-15N,13C-a3w, 20 mM acetate, 50 mM KCl 2% H2O/98% D2O Gntert, C. Mumenthaler, K. Wuthrich refinement DYANA 1.5 750 Varian INOVA GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A ARG 3 n 3 ARG 3 A VAL 4 n 4 VAL 4 A LYS 5 n 5 LYS 5 A ALA 6 n 6 ALA 6 A LEU 7 n 7 LEU 7 A GLU 8 n 8 GLU 8 A GLU 9 n 9 GLU 9 A LYS 10 n 10 LYS 10 A VAL 11 n 11 VAL 11 A LYS 12 n 12 LYS 12 A ALA 13 n 13 ALA 13 A LEU 14 n 14 LEU 14 A GLU 15 n 15 GLU 15 A GLU 16 n 16 GLU 16 A LYS 17 n 17 LYS 17 A VAL 18 n 18 VAL 18 A LYS 19 n 19 LYS 19 A ALA 20 n 20 ALA 20 A LEU 21 n 21 LEU 21 A GLY 22 n 22 GLY 22 A GLY 23 n 23 GLY 23 A GLY 24 n 24 GLY 24 A GLY 25 n 25 GLY 25 A ARG 26 n 26 ARG 26 A ILE 27 n 27 ILE 27 A GLU 28 n 28 GLU 28 A GLU 29 n 29 GLU 29 A LEU 30 n 30 LEU 30 A LYS 31 n 31 LYS 31 A LYS 32 n 32 LYS 32 A LYS 33 n 33 LYS 33 A TRP 34 n 34 TRP 34 A GLU 35 n 35 GLU 35 A GLU 36 n 36 GLU 36 A LEU 37 n 37 LEU 37 A LYS 38 n 38 LYS 38 A LYS 39 n 39 LYS 39 A LYS 40 n 40 LYS 40 A ILE 41 n 41 ILE 41 A GLU 42 n 42 GLU 42 A GLU 43 n 43 GLU 43 A LEU 44 n 44 LEU 44 A GLY 45 n 45 GLY 45 A GLY 46 n 46 GLY 46 A GLY 47 n 47 GLY 47 A GLY 48 n 48 GLY 48 A GLU 49 n 49 GLU 49 A VAL 50 n 50 VAL 50 A LYS 51 n 51 LYS 51 A LYS 52 n 52 LYS 52 A VAL 53 n 53 VAL 53 A GLU 54 n 54 GLU 54 A GLU 55 n 55 GLU 55 A GLU 56 n 56 GLU 56 A VAL 57 n 57 VAL 57 A LYS 58 n 58 LYS 58 A LYS 59 n 59 LYS 59 A LEU 60 n 60 LEU 60 A GLU 61 n 61 GLU 61 A GLU 62 n 62 GLU 62 A GLU 63 n 63 GLU 63 A ILE 64 n 64 ILE 64 A LYS 65 n 65 LYS 65 A LYS 66 n 66 LYS 66 A LEU 67 n 67 LEU 67 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H ILE LYS 27 31 1.44 1 A A O H LEU ILE 60 64 1.54 1 A A O H GLU LYS 61 65 1.56 1 A A O H VAL GLU 4 8 1.58 2 A A O H LEU TRP 30 34 1.52 2 A A O H LEU ILE 60 64 1.52 2 A A O H GLU ALA 16 20 1.59 2 A A O H LEU VAL 14 18 1.59 2 A A O H VAL GLU 4 8 1.60 3 A A O H VAL GLU 4 8 1.51 3 A A O H LEU TRP 30 34 1.51 3 A A O H LEU ILE 60 64 1.52 3 A A O H GLU LYS 8 12 1.58 3 A A O H LEU LYS 37 40 1.59 3 A A O H LYS LEU 10 14 1.59 4 A A O H ILE LYS 27 31 1.37 4 A A O H LEU ILE 60 64 1.55 4 A A O H VAL GLU 4 8 1.57 4 A A O H GLU LYS 8 12 1.58 4 A A O H LEU VAL 14 18 1.59 4 A A O H ALA LYS 13 17 1.60 5 A A O H ILE LYS 27 31 1.40 5 A A O H LEU ILE 60 64 1.46 5 A A O H LEU VAL 14 18 1.50 5 A A O H GLU LYS 8 12 1.56 5 A A O H VAL GLU 4 8 1.56 6 A A O H LEU ILE 60 64 1.48 6 A A O H LEU VAL 14 18 1.49 6 A A O H VAL GLU 4 8 1.55 7 A A O H LEU ILE 60 64 1.43 7 A A O H VAL GLU 4 8 1.50 7 A A O H LEU TRP 30 34 1.52 7 A A O H LEU VAL 14 18 1.54 7 A A O H GLU LYS 61 65 1.56 7 A A O H ALA LYS 13 17 1.58 7 A A O H GLU LYS 8 12 1.59 8 A A O H LEU ILE 60 64 1.49 8 A A O H LEU VAL 14 18 1.55 8 A A O H ALA LYS 13 17 1.56 8 A A O H GLU LYS 8 12 1.58 8 A A O H LEU TRP 30 34 1.59 9 A A O H ILE LYS 27 31 1.37 9 A A O H LEU TRP 30 34 1.48 9 A A O H LEU ILE 60 64 1.50 9 A A O H VAL GLU 4 8 1.55 9 A A O H LEU VAL 14 18 1.56 9 A A O H GLU LYS 8 12 1.57 9 A A O H GLU LEU 63 67 1.58 9 A A O H LYS LEU 10 14 1.59 10 A A O H LEU ILE 60 64 1.44 10 A A O H VAL GLU 4 8 1.53 10 A A O H LEU VAL 14 18 1.58 10 A A O H LEU TRP 30 34 1.59 10 A A O H GLU LYS 8 12 1.59 11 A A O H ILE LYS 27 31 1.39 11 A A O H LEU ILE 60 64 1.49 11 A A O H LYS LEU 33 37 1.50 11 A A O H GLU LYS 61 65 1.53 11 A A O H LEU TRP 30 34 1.54 11 A A O H LEU VAL 14 18 1.55 11 A A O H LYS LEU 10 14 1.56 11 A A O H VAL GLU 4 8 1.57 11 A A O H GLU LEU 63 67 1.60 12 A A O H ILE LYS 27 31 1.39 12 A A O H LYS LEU 33 37 1.51 12 A A O H LEU ILE 60 64 1.52 12 A A O H LYS LEU 10 14 1.54 12 A A O H GLU LEU 63 67 1.56 12 A A O H GLU LYS 61 65 1.56 12 A A O H LEU TRP 30 34 1.56 12 A A O H LEU VAL 14 18 1.57 13 A A O H ILE LYS 27 31 1.39 13 A A O H ALA LYS 13 17 1.51 13 A A O H LEU ILE 60 64 1.53 13 A A O H GLU LYS 8 12 1.54 13 A A O H LEU TRP 30 34 1.56 13 A A O H LEU VAL 14 18 1.56 14 A A O H ILE LYS 27 31 1.41 14 A A O H LEU ILE 60 64 1.47 14 A A O H LEU VAL 14 18 1.53 14 A A O H VAL GLU 4 8 1.56 14 A A O H GLU LYS 8 12 1.57 14 A A O H ALA LYS 13 17 1.59 15 A A O H ILE LYS 27 31 1.43 15 A A O H ALA LYS 13 17 1.52 15 A A O H LEU VAL 14 18 1.55 15 A A O H LEU ILE 60 64 1.55 15 A A O H GLU LYS 8 12 1.58 16 A A O H ILE LYS 27 31 1.47 16 A A O H LEU ILE 60 64 1.50 16 A A O H VAL GLU 4 8 1.52 16 A A O H LEU VAL 14 18 1.53 16 A A O H GLU LYS 8 12 1.53 1 A ARG 3 69.36 -59.28 1 A GLU 8 -36.59 -32.96 1 A ARG 26 177.46 -34.82 1 A GLU 29 -47.21 -73.68 1 A LEU 44 -43.48 99.99 1 A LYS 51 -37.58 -31.79 1 A LEU 60 -74.74 -70.12 2 A ARG 3 -127.90 -57.54 2 A GLU 8 -37.43 -32.38 2 A ARG 26 -62.10 -84.82 2 A LEU 44 -41.65 102.96 2 A GLU 49 -90.38 34.54 2 A LYS 51 -37.44 -31.71 2 A LEU 60 -73.52 -71.69 3 A SER 2 -100.61 78.66 3 A ARG 3 -148.08 -66.38 3 A GLU 8 -35.73 -33.15 3 A ARG 26 -63.35 -81.71 3 A LEU 44 -41.28 99.58 3 A GLU 49 -91.95 33.29 3 A LYS 51 -37.88 -31.57 3 A LEU 60 -68.85 -72.42 4 A SER 2 179.48 -53.67 4 A GLU 8 -36.49 -33.23 4 A ARG 26 -102.76 -77.51 4 A GLU 29 -44.43 -73.95 4 A LEU 44 -41.70 105.72 4 A GLU 49 -92.89 34.12 4 A LYS 51 -37.29 -32.33 4 A LEU 60 -72.07 -74.11 5 A SER 2 -178.62 68.71 5 A ARG 3 -146.90 -58.64 5 A GLU 8 -36.81 -33.85 5 A ARG 26 -143.68 -69.76 5 A GLU 29 -46.35 -74.53 5 A LEU 44 -41.28 101.55 5 A GLU 49 -90.58 34.12 5 A LYS 51 -37.95 -31.19 5 A VAL 53 -41.39 -71.67 5 A GLU 54 -38.13 -70.29 5 A LEU 60 -73.20 -72.57 6 A SER 2 71.31 -61.08 6 A ARG 3 -98.04 -61.52 6 A GLU 8 -37.81 -31.73 6 A ARG 26 -166.28 -84.36 6 A LEU 44 -43.30 99.25 6 A GLU 49 -94.38 36.37 6 A LYS 51 -37.84 -31.13 6 A VAL 53 -41.92 -70.60 6 A LEU 60 -78.76 -72.27 7 A SER 2 -154.83 -54.20 7 A ARG 3 70.16 -63.68 7 A GLU 8 -37.98 -30.78 7 A LEU 21 -47.71 151.16 7 A ARG 26 -72.55 -84.05 7 A LYS 32 -70.95 -70.16 7 A LEU 44 -41.38 105.20 7 A GLU 49 -89.29 39.13 7 A LYS 51 -36.76 -32.36 7 A LEU 60 -62.78 -71.88 8 A ARG 3 66.22 -68.38 8 A GLU 8 -36.63 -32.81 8 A ARG 26 -69.47 -84.03 8 A GLU 28 -39.48 -27.25 8 A LEU 44 -41.21 106.48 8 A GLU 49 -89.12 39.30 8 A LYS 51 -37.74 -31.05 8 A VAL 53 -41.52 -70.49 8 A GLU 54 -38.99 -70.15 8 A LEU 60 -77.72 -70.95 9 A ARG 3 -122.72 -60.91 9 A GLU 8 -36.44 -34.52 9 A ARG 26 178.11 -79.73 9 A GLU 29 -50.30 -73.19 9 A LEU 44 -41.01 97.32 9 A GLU 49 -89.32 38.52 9 A LYS 51 -37.56 -31.82 9 A LEU 60 -76.71 -71.47 10 A SER 2 -152.06 -64.79 10 A GLU 8 -36.11 -33.65 10 A ARG 26 -179.30 -81.01 10 A LYS 32 -69.57 -70.25 10 A LEU 44 -41.82 97.70 10 A GLU 49 -95.10 33.58 10 A LYS 51 -37.78 -31.43 10 A LEU 60 -70.33 -73.24 11 A SER 2 -63.94 91.50 11 A ARG 3 -179.74 -71.93 11 A GLU 8 -35.90 -34.02 11 A LEU 21 -39.61 137.77 11 A ARG 26 -163.95 -78.45 11 A GLU 29 -50.52 -73.39 11 A LEU 44 -42.12 99.56 11 A GLU 49 -94.62 37.71 11 A LYS 51 -37.74 -31.89 11 A VAL 53 -41.30 -70.41 11 A LEU 60 -73.58 -70.61 12 A SER 2 -85.17 -75.68 12 A ARG 3 -149.92 -83.81 12 A GLU 8 -37.58 -31.09 12 A ARG 26 -158.20 -73.72 12 A GLU 29 -53.64 -72.50 12 A LEU 44 -42.20 100.07 12 A GLU 49 -95.12 30.26 12 A LYS 51 -37.60 -31.63 12 A LEU 60 -68.54 -72.79 13 A SER 2 169.12 138.63 13 A ARG 3 76.32 -70.76 13 A VAL 4 -92.82 -66.87 13 A GLU 8 -36.69 -32.16 13 A ARG 26 -168.08 -78.15 13 A GLU 29 -45.55 -73.98 13 A LEU 44 -41.18 107.42 13 A GLU 49 -90.94 40.69 13 A LYS 51 -37.95 -31.18 13 A LEU 60 -73.86 -72.80 14 A SER 2 52.86 73.89 14 A ARG 3 -137.21 -62.56 14 A GLU 8 -35.87 -34.07 14 A ARG 26 -163.45 -77.62 14 A GLU 29 -49.90 -73.94 14 A GLU 49 -95.09 33.41 14 A LYS 51 -37.70 -32.02 14 A LEU 60 -74.94 -72.37 15 A SER 2 -142.74 56.83 15 A ARG 3 -150.33 -69.86 15 A GLU 8 -36.23 -34.10 15 A ARG 26 176.17 -34.53 15 A GLU 29 -44.93 -73.89 15 A LEU 44 -41.31 105.39 15 A GLU 49 -91.19 36.35 15 A LYS 51 -37.86 -31.25 15 A LEU 60 -75.28 -71.81 16 A ARG 3 65.18 -69.60 16 A GLU 8 -36.06 -38.39 16 A ARG 26 174.77 -33.50 16 A GLU 29 -50.68 -73.37 16 A LEU 44 -41.66 109.75 16 A LYS 51 -37.75 -31.52 16 A LEU 60 -75.40 -70.66 De Novo Designed Protein Model of Radical Enzymes 1 N N A ARG 3 A ARG 3 HELX_P A LEU 21 A LEU 21 1 1 19 A ARG 26 A ARG 26 HELX_P A LEU 44 A LEU 44 1 2 19 A GLU 49 A GLU 49 HELX_P A LEU 67 A LEU 67 1 3 19 DE NOVO PROTEIN three helix bundle, DE NOVO PROTEIN 1LQ7 PDB 1 1LQ7 1 67 1LQ7 1 67 1LQ7 A 1 1 67