1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Dai, Q.-H.
Tommos, C.
Fuentes, E.J.
Blomberg, M.
Dutton, P.L.
Wand, A.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
124
10952
10953
10.1021/ja0264201
12224922
Structure of a De Novo Designed Protein Model of Radical Enzymes
2002
US
Biochemistry
BICHAW
0033
0006-2960
38
9495
9507
10.1021/bi990609g
De novo proteins as models of radical enzymes
1999
10.2210/pdb1lq7/pdb
pdb_00001lq7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
Protein model for tryptophanyl radical
7562.899
Alpha3W
1
man
polymer
no
no
GSRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL
GSRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
de novo design/synthetic gene: gene generated using overlapping PCR method from synthetic oligos
562
Escherichia coli
DH5alpha
PLASMID
pET32
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2002-06-05
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
sequence
an appropriate sequence database reference
was not available at the time of processing.
RCSB
Y
RCSB
2002-05-09
REL
lowest refinement function penalty, best chemical shift agreement
30
16
3D_13C-separated_NOESY
3D_13C-separated_NOESY
4D_13C-separated_NOESY
HNHA
70 mM
5.5
ambient
301
K
70 mM
5.5
ambient
301
K
1130 NOEs, 43 phi restraints
torsion angle dynamics
16
chemical shift
0.85 mM U-15N,13C-a3w,
20 mM acetate,
50 mM KCl
92% H2O/8% D2O
0.85 mM U-15N,13C-a3w,
20 mM acetate,
50 mM KCl
2% H2O/98% D2O
Gntert, C. Mumenthaler, K. Wuthrich
refinement
DYANA
1.5
750
Varian
INOVA
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
ARG
3
n
3
ARG
3
A
VAL
4
n
4
VAL
4
A
LYS
5
n
5
LYS
5
A
ALA
6
n
6
ALA
6
A
LEU
7
n
7
LEU
7
A
GLU
8
n
8
GLU
8
A
GLU
9
n
9
GLU
9
A
LYS
10
n
10
LYS
10
A
VAL
11
n
11
VAL
11
A
LYS
12
n
12
LYS
12
A
ALA
13
n
13
ALA
13
A
LEU
14
n
14
LEU
14
A
GLU
15
n
15
GLU
15
A
GLU
16
n
16
GLU
16
A
LYS
17
n
17
LYS
17
A
VAL
18
n
18
VAL
18
A
LYS
19
n
19
LYS
19
A
ALA
20
n
20
ALA
20
A
LEU
21
n
21
LEU
21
A
GLY
22
n
22
GLY
22
A
GLY
23
n
23
GLY
23
A
GLY
24
n
24
GLY
24
A
GLY
25
n
25
GLY
25
A
ARG
26
n
26
ARG
26
A
ILE
27
n
27
ILE
27
A
GLU
28
n
28
GLU
28
A
GLU
29
n
29
GLU
29
A
LEU
30
n
30
LEU
30
A
LYS
31
n
31
LYS
31
A
LYS
32
n
32
LYS
32
A
LYS
33
n
33
LYS
33
A
TRP
34
n
34
TRP
34
A
GLU
35
n
35
GLU
35
A
GLU
36
n
36
GLU
36
A
LEU
37
n
37
LEU
37
A
LYS
38
n
38
LYS
38
A
LYS
39
n
39
LYS
39
A
LYS
40
n
40
LYS
40
A
ILE
41
n
41
ILE
41
A
GLU
42
n
42
GLU
42
A
GLU
43
n
43
GLU
43
A
LEU
44
n
44
LEU
44
A
GLY
45
n
45
GLY
45
A
GLY
46
n
46
GLY
46
A
GLY
47
n
47
GLY
47
A
GLY
48
n
48
GLY
48
A
GLU
49
n
49
GLU
49
A
VAL
50
n
50
VAL
50
A
LYS
51
n
51
LYS
51
A
LYS
52
n
52
LYS
52
A
VAL
53
n
53
VAL
53
A
GLU
54
n
54
GLU
54
A
GLU
55
n
55
GLU
55
A
GLU
56
n
56
GLU
56
A
VAL
57
n
57
VAL
57
A
LYS
58
n
58
LYS
58
A
LYS
59
n
59
LYS
59
A
LEU
60
n
60
LEU
60
A
GLU
61
n
61
GLU
61
A
GLU
62
n
62
GLU
62
A
GLU
63
n
63
GLU
63
A
ILE
64
n
64
ILE
64
A
LYS
65
n
65
LYS
65
A
LYS
66
n
66
LYS
66
A
LEU
67
n
67
LEU
67
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
H
ILE
LYS
27
31
1.44
1
A
A
O
H
LEU
ILE
60
64
1.54
1
A
A
O
H
GLU
LYS
61
65
1.56
1
A
A
O
H
VAL
GLU
4
8
1.58
2
A
A
O
H
LEU
TRP
30
34
1.52
2
A
A
O
H
LEU
ILE
60
64
1.52
2
A
A
O
H
GLU
ALA
16
20
1.59
2
A
A
O
H
LEU
VAL
14
18
1.59
2
A
A
O
H
VAL
GLU
4
8
1.60
3
A
A
O
H
VAL
GLU
4
8
1.51
3
A
A
O
H
LEU
TRP
30
34
1.51
3
A
A
O
H
LEU
ILE
60
64
1.52
3
A
A
O
H
GLU
LYS
8
12
1.58
3
A
A
O
H
LEU
LYS
37
40
1.59
3
A
A
O
H
LYS
LEU
10
14
1.59
4
A
A
O
H
ILE
LYS
27
31
1.37
4
A
A
O
H
LEU
ILE
60
64
1.55
4
A
A
O
H
VAL
GLU
4
8
1.57
4
A
A
O
H
GLU
LYS
8
12
1.58
4
A
A
O
H
LEU
VAL
14
18
1.59
4
A
A
O
H
ALA
LYS
13
17
1.60
5
A
A
O
H
ILE
LYS
27
31
1.40
5
A
A
O
H
LEU
ILE
60
64
1.46
5
A
A
O
H
LEU
VAL
14
18
1.50
5
A
A
O
H
GLU
LYS
8
12
1.56
5
A
A
O
H
VAL
GLU
4
8
1.56
6
A
A
O
H
LEU
ILE
60
64
1.48
6
A
A
O
H
LEU
VAL
14
18
1.49
6
A
A
O
H
VAL
GLU
4
8
1.55
7
A
A
O
H
LEU
ILE
60
64
1.43
7
A
A
O
H
VAL
GLU
4
8
1.50
7
A
A
O
H
LEU
TRP
30
34
1.52
7
A
A
O
H
LEU
VAL
14
18
1.54
7
A
A
O
H
GLU
LYS
61
65
1.56
7
A
A
O
H
ALA
LYS
13
17
1.58
7
A
A
O
H
GLU
LYS
8
12
1.59
8
A
A
O
H
LEU
ILE
60
64
1.49
8
A
A
O
H
LEU
VAL
14
18
1.55
8
A
A
O
H
ALA
LYS
13
17
1.56
8
A
A
O
H
GLU
LYS
8
12
1.58
8
A
A
O
H
LEU
TRP
30
34
1.59
9
A
A
O
H
ILE
LYS
27
31
1.37
9
A
A
O
H
LEU
TRP
30
34
1.48
9
A
A
O
H
LEU
ILE
60
64
1.50
9
A
A
O
H
VAL
GLU
4
8
1.55
9
A
A
O
H
LEU
VAL
14
18
1.56
9
A
A
O
H
GLU
LYS
8
12
1.57
9
A
A
O
H
GLU
LEU
63
67
1.58
9
A
A
O
H
LYS
LEU
10
14
1.59
10
A
A
O
H
LEU
ILE
60
64
1.44
10
A
A
O
H
VAL
GLU
4
8
1.53
10
A
A
O
H
LEU
VAL
14
18
1.58
10
A
A
O
H
LEU
TRP
30
34
1.59
10
A
A
O
H
GLU
LYS
8
12
1.59
11
A
A
O
H
ILE
LYS
27
31
1.39
11
A
A
O
H
LEU
ILE
60
64
1.49
11
A
A
O
H
LYS
LEU
33
37
1.50
11
A
A
O
H
GLU
LYS
61
65
1.53
11
A
A
O
H
LEU
TRP
30
34
1.54
11
A
A
O
H
LEU
VAL
14
18
1.55
11
A
A
O
H
LYS
LEU
10
14
1.56
11
A
A
O
H
VAL
GLU
4
8
1.57
11
A
A
O
H
GLU
LEU
63
67
1.60
12
A
A
O
H
ILE
LYS
27
31
1.39
12
A
A
O
H
LYS
LEU
33
37
1.51
12
A
A
O
H
LEU
ILE
60
64
1.52
12
A
A
O
H
LYS
LEU
10
14
1.54
12
A
A
O
H
GLU
LEU
63
67
1.56
12
A
A
O
H
GLU
LYS
61
65
1.56
12
A
A
O
H
LEU
TRP
30
34
1.56
12
A
A
O
H
LEU
VAL
14
18
1.57
13
A
A
O
H
ILE
LYS
27
31
1.39
13
A
A
O
H
ALA
LYS
13
17
1.51
13
A
A
O
H
LEU
ILE
60
64
1.53
13
A
A
O
H
GLU
LYS
8
12
1.54
13
A
A
O
H
LEU
TRP
30
34
1.56
13
A
A
O
H
LEU
VAL
14
18
1.56
14
A
A
O
H
ILE
LYS
27
31
1.41
14
A
A
O
H
LEU
ILE
60
64
1.47
14
A
A
O
H
LEU
VAL
14
18
1.53
14
A
A
O
H
VAL
GLU
4
8
1.56
14
A
A
O
H
GLU
LYS
8
12
1.57
14
A
A
O
H
ALA
LYS
13
17
1.59
15
A
A
O
H
ILE
LYS
27
31
1.43
15
A
A
O
H
ALA
LYS
13
17
1.52
15
A
A
O
H
LEU
VAL
14
18
1.55
15
A
A
O
H
LEU
ILE
60
64
1.55
15
A
A
O
H
GLU
LYS
8
12
1.58
16
A
A
O
H
ILE
LYS
27
31
1.47
16
A
A
O
H
LEU
ILE
60
64
1.50
16
A
A
O
H
VAL
GLU
4
8
1.52
16
A
A
O
H
LEU
VAL
14
18
1.53
16
A
A
O
H
GLU
LYS
8
12
1.53
1
A
ARG
3
69.36
-59.28
1
A
GLU
8
-36.59
-32.96
1
A
ARG
26
177.46
-34.82
1
A
GLU
29
-47.21
-73.68
1
A
LEU
44
-43.48
99.99
1
A
LYS
51
-37.58
-31.79
1
A
LEU
60
-74.74
-70.12
2
A
ARG
3
-127.90
-57.54
2
A
GLU
8
-37.43
-32.38
2
A
ARG
26
-62.10
-84.82
2
A
LEU
44
-41.65
102.96
2
A
GLU
49
-90.38
34.54
2
A
LYS
51
-37.44
-31.71
2
A
LEU
60
-73.52
-71.69
3
A
SER
2
-100.61
78.66
3
A
ARG
3
-148.08
-66.38
3
A
GLU
8
-35.73
-33.15
3
A
ARG
26
-63.35
-81.71
3
A
LEU
44
-41.28
99.58
3
A
GLU
49
-91.95
33.29
3
A
LYS
51
-37.88
-31.57
3
A
LEU
60
-68.85
-72.42
4
A
SER
2
179.48
-53.67
4
A
GLU
8
-36.49
-33.23
4
A
ARG
26
-102.76
-77.51
4
A
GLU
29
-44.43
-73.95
4
A
LEU
44
-41.70
105.72
4
A
GLU
49
-92.89
34.12
4
A
LYS
51
-37.29
-32.33
4
A
LEU
60
-72.07
-74.11
5
A
SER
2
-178.62
68.71
5
A
ARG
3
-146.90
-58.64
5
A
GLU
8
-36.81
-33.85
5
A
ARG
26
-143.68
-69.76
5
A
GLU
29
-46.35
-74.53
5
A
LEU
44
-41.28
101.55
5
A
GLU
49
-90.58
34.12
5
A
LYS
51
-37.95
-31.19
5
A
VAL
53
-41.39
-71.67
5
A
GLU
54
-38.13
-70.29
5
A
LEU
60
-73.20
-72.57
6
A
SER
2
71.31
-61.08
6
A
ARG
3
-98.04
-61.52
6
A
GLU
8
-37.81
-31.73
6
A
ARG
26
-166.28
-84.36
6
A
LEU
44
-43.30
99.25
6
A
GLU
49
-94.38
36.37
6
A
LYS
51
-37.84
-31.13
6
A
VAL
53
-41.92
-70.60
6
A
LEU
60
-78.76
-72.27
7
A
SER
2
-154.83
-54.20
7
A
ARG
3
70.16
-63.68
7
A
GLU
8
-37.98
-30.78
7
A
LEU
21
-47.71
151.16
7
A
ARG
26
-72.55
-84.05
7
A
LYS
32
-70.95
-70.16
7
A
LEU
44
-41.38
105.20
7
A
GLU
49
-89.29
39.13
7
A
LYS
51
-36.76
-32.36
7
A
LEU
60
-62.78
-71.88
8
A
ARG
3
66.22
-68.38
8
A
GLU
8
-36.63
-32.81
8
A
ARG
26
-69.47
-84.03
8
A
GLU
28
-39.48
-27.25
8
A
LEU
44
-41.21
106.48
8
A
GLU
49
-89.12
39.30
8
A
LYS
51
-37.74
-31.05
8
A
VAL
53
-41.52
-70.49
8
A
GLU
54
-38.99
-70.15
8
A
LEU
60
-77.72
-70.95
9
A
ARG
3
-122.72
-60.91
9
A
GLU
8
-36.44
-34.52
9
A
ARG
26
178.11
-79.73
9
A
GLU
29
-50.30
-73.19
9
A
LEU
44
-41.01
97.32
9
A
GLU
49
-89.32
38.52
9
A
LYS
51
-37.56
-31.82
9
A
LEU
60
-76.71
-71.47
10
A
SER
2
-152.06
-64.79
10
A
GLU
8
-36.11
-33.65
10
A
ARG
26
-179.30
-81.01
10
A
LYS
32
-69.57
-70.25
10
A
LEU
44
-41.82
97.70
10
A
GLU
49
-95.10
33.58
10
A
LYS
51
-37.78
-31.43
10
A
LEU
60
-70.33
-73.24
11
A
SER
2
-63.94
91.50
11
A
ARG
3
-179.74
-71.93
11
A
GLU
8
-35.90
-34.02
11
A
LEU
21
-39.61
137.77
11
A
ARG
26
-163.95
-78.45
11
A
GLU
29
-50.52
-73.39
11
A
LEU
44
-42.12
99.56
11
A
GLU
49
-94.62
37.71
11
A
LYS
51
-37.74
-31.89
11
A
VAL
53
-41.30
-70.41
11
A
LEU
60
-73.58
-70.61
12
A
SER
2
-85.17
-75.68
12
A
ARG
3
-149.92
-83.81
12
A
GLU
8
-37.58
-31.09
12
A
ARG
26
-158.20
-73.72
12
A
GLU
29
-53.64
-72.50
12
A
LEU
44
-42.20
100.07
12
A
GLU
49
-95.12
30.26
12
A
LYS
51
-37.60
-31.63
12
A
LEU
60
-68.54
-72.79
13
A
SER
2
169.12
138.63
13
A
ARG
3
76.32
-70.76
13
A
VAL
4
-92.82
-66.87
13
A
GLU
8
-36.69
-32.16
13
A
ARG
26
-168.08
-78.15
13
A
GLU
29
-45.55
-73.98
13
A
LEU
44
-41.18
107.42
13
A
GLU
49
-90.94
40.69
13
A
LYS
51
-37.95
-31.18
13
A
LEU
60
-73.86
-72.80
14
A
SER
2
52.86
73.89
14
A
ARG
3
-137.21
-62.56
14
A
GLU
8
-35.87
-34.07
14
A
ARG
26
-163.45
-77.62
14
A
GLU
29
-49.90
-73.94
14
A
GLU
49
-95.09
33.41
14
A
LYS
51
-37.70
-32.02
14
A
LEU
60
-74.94
-72.37
15
A
SER
2
-142.74
56.83
15
A
ARG
3
-150.33
-69.86
15
A
GLU
8
-36.23
-34.10
15
A
ARG
26
176.17
-34.53
15
A
GLU
29
-44.93
-73.89
15
A
LEU
44
-41.31
105.39
15
A
GLU
49
-91.19
36.35
15
A
LYS
51
-37.86
-31.25
15
A
LEU
60
-75.28
-71.81
16
A
ARG
3
65.18
-69.60
16
A
GLU
8
-36.06
-38.39
16
A
ARG
26
174.77
-33.50
16
A
GLU
29
-50.68
-73.37
16
A
LEU
44
-41.66
109.75
16
A
LYS
51
-37.75
-31.52
16
A
LEU
60
-75.40
-70.66
De Novo Designed Protein Model of Radical Enzymes
1
N
N
A
ARG
3
A
ARG
3
HELX_P
A
LEU
21
A
LEU
21
1
1
19
A
ARG
26
A
ARG
26
HELX_P
A
LEU
44
A
LEU
44
1
2
19
A
GLU
49
A
GLU
49
HELX_P
A
LEU
67
A
LEU
67
1
3
19
DE NOVO PROTEIN
three helix bundle, DE NOVO PROTEIN
1LQ7
PDB
1
1LQ7
1
67
1LQ7
1
67
1LQ7
A
1
1
67