0.016966
0.000000
0.000000
0.000000
0.016966
0.000000
0.000000
0.000000
0.004109
0.00000
0.00000
0.00000
Hon, W.C.
Wilson, M.I.
Harlos, K.
Claridge, T.D.
Schofield, C.J.
Pugh, C.W.
Maxwell, P.H.
Ratcliffe, P.J.
Stuart, D.I.
Jones, E.Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.940
58.940
243.380
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C5 H9 N O3
131.130
n
4-HYDROXYPROLINE
HYDROXYPROLINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
N
166
R
C
N
167
N
C
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
S
C
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
N
N
202
S
C
N
203
N
C
N
204
N
O
N
205
N
C
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
N
N
232
N
O
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
S
N
255
N
C
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
O
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
S
N
323
N
O
N
324
N
O
N
325
N
O
N
326
N
O
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
R
C
N
332
N
O
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
N
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
N
382
N
O
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
Y
266
N
doub
Y
267
N
sing
Y
268
N
sing
N
269
N
sing
Y
270
N
doub
N
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
Y
339
N
doub
Y
340
N
sing
Y
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
UK
Nature
NATUAS
0006
0028-0836
417
975
978
10.1038/nature00767
12050673
Structural basis for the recognition of hydroxyproline in HIF-1 alpha by pVHL.
2002
10.2210/pdb1lqb/pdb
pdb_00001lqb
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-11-30
ADSC QUANTUM 4
Diamond [111] and Ge crystals
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
ID14-2
ESRF
0.98
SYNCHROTRON
ESRF BEAMLINE ID14-2
13147.781
Elongin B
1
man
polymer
10843.420
Elongin C
residues 17-112
1
man
polymer
18702.291
von hippel-lindau disease tumor supressor
residues 52-213
1
man
polymer
3979.335
Hypoxia-inducible factor 1 ALPHA
residues 549-582
1
syn
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
84
nat
water
transcription elongation factor B, polypeptide 2
transcription elongation factor B (sIII), polypeptide 1
PVHL, G7 protein
HIF-1 ALPHA
no
no
MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR
ADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ
MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR
ADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ
A
polypeptide(L)
no
no
MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA
PEIALELLMAANFLDC
MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA
PEIALELLMAANFLDC
B
polypeptide(L)
no
no
GSMEAGRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRDAGTHDGLLVN
QTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQRM
GD
GSMEAGRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRDAGTHDGLLVN
QTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQRM
GD
C
polypeptide(L)
no
yes
PFSTQDTDLDLEMLA(HYP)YIPMDDDFQLRSFDQLSP
PFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSP
D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PGEX-4T3
human
Homo
Escherichia
Escherichia coli
sample
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PBB75
human
Homo
Escherichia
Escherichia coli
sample
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PGEX-4T3
1
2.26
45.64
VAPOR DIFFUSION, SITTING DROP
7.4
HEPES, PEG2000 monomethylester, ammonium sulfate, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-07-03
1
1
2008-04-28
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2002-05-09
REL
REL
SO4
SULFATE ION
HOH
water
The peptide was synthesized with a biotin tag at the N-terminus and with P564 as a 4(R)hydroxyproline. The sequence of the peptide is naturally found in homo sapiens (human).
sample
1VCB
1VCB.pdb
PDB
experimental model
SO4
1
5
SO4
SO4
801
A
HOH
3
6
HOH
HOH
802
A
HOH
8
6
HOH
HOH
803
A
HOH
12
6
HOH
HOH
804
A
HOH
13
6
HOH
HOH
805
A
HOH
14
6
HOH
HOH
806
A
HOH
21
6
HOH
HOH
807
A
HOH
22
6
HOH
HOH
808
A
HOH
27
6
HOH
HOH
809
A
HOH
29
6
HOH
HOH
810
A
HOH
31
6
HOH
HOH
811
A
HOH
33
6
HOH
HOH
812
A
HOH
34
6
HOH
HOH
813
A
HOH
35
6
HOH
HOH
814
A
HOH
39
6
HOH
HOH
815
A
HOH
40
6
HOH
HOH
816
A
HOH
44
6
HOH
HOH
817
A
HOH
46
6
HOH
HOH
818
A
HOH
47
6
HOH
HOH
819
A
HOH
56
6
HOH
HOH
820
A
HOH
58
6
HOH
HOH
821
A
HOH
60
6
HOH
HOH
822
A
HOH
62
6
HOH
HOH
823
A
HOH
64
6
HOH
HOH
824
A
HOH
69
6
HOH
HOH
825
A
HOH
70
6
HOH
HOH
826
A
HOH
71
6
HOH
HOH
827
A
HOH
74
6
HOH
HOH
828
A
HOH
75
6
HOH
HOH
829
A
HOH
76
6
HOH
HOH
830
A
HOH
78
6
HOH
HOH
831
A
HOH
79
6
HOH
HOH
832
A
HOH
5
6
HOH
HOH
113
B
HOH
6
6
HOH
HOH
114
B
HOH
7
6
HOH
HOH
115
B
HOH
9
6
HOH
HOH
116
B
HOH
10
6
HOH
HOH
117
B
HOH
11
6
HOH
HOH
118
B
HOH
15
6
HOH
HOH
119
B
HOH
16
6
HOH
HOH
120
B
HOH
18
6
HOH
HOH
121
B
HOH
19
6
HOH
HOH
122
B
HOH
25
6
HOH
HOH
123
B
HOH
26
6
HOH
HOH
124
B
HOH
28
6
HOH
HOH
125
B
HOH
38
6
HOH
HOH
126
B
HOH
41
6
HOH
HOH
127
B
HOH
42
6
HOH
HOH
128
B
HOH
55
6
HOH
HOH
129
B
HOH
63
6
HOH
HOH
130
B
HOH
68
6
HOH
HOH
131
B
HOH
72
6
HOH
HOH
132
B
HOH
77
6
HOH
HOH
133
B
HOH
80
6
HOH
HOH
134
B
HOH
82
6
HOH
HOH
135
B
HOH
83
6
HOH
HOH
136
B
HOH
1
6
HOH
HOH
214
C
HOH
2
6
HOH
HOH
215
C
HOH
4
6
HOH
HOH
216
C
HOH
17
6
HOH
HOH
217
C
HOH
20
6
HOH
HOH
218
C
HOH
23
6
HOH
HOH
219
C
HOH
24
6
HOH
HOH
220
C
HOH
30
6
HOH
HOH
221
C
HOH
32
6
HOH
HOH
222
C
HOH
36
6
HOH
HOH
223
C
HOH
37
6
HOH
HOH
224
C
HOH
43
6
HOH
HOH
225
C
HOH
45
6
HOH
HOH
226
C
HOH
48
6
HOH
HOH
227
C
HOH
49
6
HOH
HOH
228
C
HOH
50
6
HOH
HOH
229
C
HOH
51
6
HOH
HOH
230
C
HOH
52
6
HOH
HOH
231
C
HOH
53
6
HOH
HOH
232
C
HOH
54
6
HOH
HOH
233
C
HOH
59
6
HOH
HOH
234
C
HOH
61
6
HOH
HOH
235
C
HOH
65
6
HOH
HOH
236
C
HOH
66
6
HOH
HOH
237
C
HOH
67
6
HOH
HOH
238
C
HOH
73
6
HOH
HOH
239
C
HOH
81
6
HOH
HOH
240
C
HOH
84
6
HOH
HOH
241
C
HOH
57
6
HOH
HOH
57
D
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
VAL
3
n
3
VAL
3
A
PHE
4
n
4
PHE
4
A
LEU
5
n
5
LEU
5
A
MET
6
n
6
MET
6
A
ILE
7
n
7
ILE
7
A
ARG
8
n
8
ARG
8
A
ARG
9
n
9
ARG
9
A
HIS
10
n
10
HIS
10
A
LYS
11
n
11
LYS
11
A
THR
12
n
12
THR
12
A
THR
13
n
13
THR
13
A
ILE
14
n
14
ILE
14
A
PHE
15
n
15
PHE
15
A
THR
16
n
16
THR
16
A
ASP
17
n
17
ASP
17
A
ALA
18
n
18
ALA
18
A
LYS
19
n
19
LYS
19
A
GLU
20
n
20
GLU
20
A
SER
21
n
21
SER
21
A
SER
22
n
22
SER
22
A
THR
23
n
23
THR
23
A
VAL
24
n
24
VAL
24
A
PHE
25
n
25
PHE
25
A
GLU
26
n
26
GLU
26
A
LEU
27
n
27
LEU
27
A
LYS
28
n
28
LYS
28
A
ARG
29
n
29
ARG
29
A
ILE
30
n
30
ILE
30
A
VAL
31
n
31
VAL
31
A
GLU
32
n
32
GLU
32
A
GLY
33
n
33
GLY
33
A
ILE
34
n
34
ILE
34
A
LEU
35
n
35
LEU
35
A
LYS
36
n
36
LYS
36
A
ARG
37
n
37
ARG
37
A
PRO
38
n
38
PRO
38
A
PRO
39
n
39
PRO
39
A
ASP
40
n
40
ASP
40
A
GLU
41
n
41
GLU
41
A
GLN
42
n
42
GLN
42
A
ARG
43
n
43
ARG
43
A
LEU
44
n
44
LEU
44
A
TYR
45
n
45
TYR
45
A
LYS
46
n
46
LYS
46
A
ASP
47
n
47
ASP
47
A
ASP
48
n
48
ASP
48
A
GLN
49
n
49
GLN
49
A
LEU
50
n
50
LEU
50
A
LEU
51
n
51
LEU
51
A
ASP
52
n
52
ASP
52
A
ASP
53
n
53
ASP
53
A
GLY
54
n
54
GLY
54
A
LYS
55
n
55
LYS
55
A
THR
56
n
56
THR
56
A
LEU
57
n
57
LEU
57
A
GLY
58
n
58
GLY
58
A
GLU
59
n
59
GLU
59
A
CYS
60
n
60
CYS
60
A
GLY
61
n
61
GLY
61
A
PHE
62
n
62
PHE
62
A
THR
63
n
63
THR
63
A
SER
64
n
64
SER
64
A
GLN
65
n
65
GLN
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
ARG
68
n
68
ARG
68
A
PRO
69
n
69
PRO
69
A
GLN
70
n
70
GLN
70
A
ALA
71
n
71
ALA
71
A
PRO
72
n
72
PRO
72
A
ALA
73
n
73
ALA
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
GLY
76
n
76
GLY
76
A
LEU
77
n
77
LEU
77
A
ALA
78
n
78
ALA
78
A
PHE
79
n
79
PHE
79
A
ARG
80
n
80
ARG
80
A
ALA
81
n
81
ALA
81
A
ASP
82
n
82
ASP
82
A
ASP
83
n
83
ASP
83
A
THR
84
n
84
THR
84
A
PHE
85
n
85
PHE
85
A
GLU
86
n
86
GLU
86
A
ALA
87
n
87
ALA
87
A
LEU
88
n
88
LEU
88
A
CYS
89
n
89
CYS
89
A
ILE
90
n
90
ILE
90
A
GLU
91
n
91
GLU
91
A
PRO
92
n
92
PRO
92
A
PHE
93
n
93
PHE
93
A
SER
94
n
94
SER
94
A
SER
95
n
95
SER
95
A
PRO
96
n
96
PRO
96
A
PRO
97
n
97
PRO
97
A
GLU
98
n
98
GLU
98
A
LEU
99
n
99
LEU
99
A
PRO
100
n
100
PRO
100
A
ASP
101
n
101
ASP
101
A
VAL
102
n
102
VAL
102
A
MET
103
n
103
MET
103
A
LYS
104
n
104
LYS
104
A
n
105
105
A
n
106
106
A
n
107
107
A
n
108
108
A
n
109
109
A
n
110
110
A
n
111
111
A
n
112
112
A
n
113
113
A
n
114
114
A
n
115
115
A
n
116
116
A
n
117
117
A
n
118
118
A
MET
17
n
1
MET
17
B
TYR
18
n
2
TYR
18
B
VAL
19
n
3
VAL
19
B
LYS
20
n
4
LYS
20
B
LEU
21
n
5
LEU
21
B
ILE
22
n
6
ILE
22
B
SER
23
n
7
SER
23
B
SER
24
n
8
SER
24
B
ASP
25
n
9
ASP
25
B
GLY
26
n
10
GLY
26
B
HIS
27
n
11
HIS
27
B
GLU
28
n
12
GLU
28
B
PHE
29
n
13
PHE
29
B
ILE
30
n
14
ILE
30
B
VAL
31
n
15
VAL
31
B
LYS
32
n
16
LYS
32
B
ARG
33
n
17
ARG
33
B
GLU
34
n
18
GLU
34
B
HIS
35
n
19
HIS
35
B
ALA
36
n
20
ALA
36
B
LEU
37
n
21
LEU
37
B
THR
38
n
22
THR
38
B
SER
39
n
23
SER
39
B
GLY
40
n
24
GLY
40
B
THR
41
n
25
THR
41
B
ILE
42
n
26
ILE
42
B
LYS
43
n
27
LYS
43
B
ALA
44
n
28
ALA
44
B
MET
45
n
29
MET
45
B
LEU
46
n
30
LEU
46
B
SER
47
n
31
SER
47
B
GLY
48
n
32
GLY
48
B
PRO
49
n
33
PRO
49
B
n
34
50
B
n
35
51
B
n
36
52
B
n
37
53
B
n
38
54
B
n
39
55
B
n
40
56
B
n
41
57
B
ASN
58
n
42
ASN
58
B
GLU
59
n
43
GLU
59
B
VAL
60
n
44
VAL
60
B
ASN
61
n
45
ASN
61
B
PHE
62
n
46
PHE
62
B
ARG
63
n
47
ARG
63
B
GLU
64
n
48
GLU
64
B
ILE
65
n
49
ILE
65
B
PRO
66
n
50
PRO
66
B
SER
67
n
51
SER
67
B
HIS
68
n
52
HIS
68
B
VAL
69
n
53
VAL
69
B
LEU
70
n
54
LEU
70
B
SER
71
n
55
SER
71
B
LYS
72
n
56
LYS
72
B
VAL
73
n
57
VAL
73
B
CYS
74
n
58
CYS
74
B
MET
75
n
59
MET
75
B
TYR
76
n
60
TYR
76
B
PHE
77
n
61
PHE
77
B
THR
78
n
62
THR
78
B
TYR
79
n
63
TYR
79
B
LYS
80
n
64
LYS
80
B
VAL
81
n
65
VAL
81
B
ARG
82
n
66
ARG
82
B
TYR
83
n
67
TYR
83
B
THR
84
n
68
THR
84
B
ASN
85
n
69
ASN
85
B
SER
86
n
70
SER
86
B
SER
87
n
71
SER
87
B
THR
88
n
72
THR
88
B
GLU
89
n
73
GLU
89
B
ILE
90
n
74
ILE
90
B
PRO
91
n
75
PRO
91
B
GLU
92
n
76
GLU
92
B
PHE
93
n
77
PHE
93
B
PRO
94
n
78
PRO
94
B
ILE
95
n
79
ILE
95
B
ALA
96
n
80
ALA
96
B
PRO
97
n
81
PRO
97
B
GLU
98
n
82
GLU
98
B
ILE
99
n
83
ILE
99
B
ALA
100
n
84
ALA
100
B
LEU
101
n
85
LEU
101
B
GLU
102
n
86
GLU
102
B
LEU
103
n
87
LEU
103
B
LEU
104
n
88
LEU
104
B
MET
105
n
89
MET
105
B
ALA
106
n
90
ALA
106
B
ALA
107
n
91
ALA
107
B
ASN
108
n
92
ASN
108
B
PHE
109
n
93
PHE
109
B
LEU
110
n
94
LEU
110
B
ASP
111
n
95
ASP
111
B
CYS
112
n
96
CYS
112
B
n
1
52
C
n
2
53
C
n
3
54
C
n
4
55
C
n
5
56
C
n
6
57
C
n
7
58
C
n
8
59
C
n
9
60
C
PRO
61
n
10
PRO
61
C
VAL
62
n
11
VAL
62
C
LEU
63
n
12
LEU
63
C
ARG
64
n
13
ARG
64
C
SER
65
n
14
SER
65
C
VAL
66
n
15
VAL
66
C
ASN
67
n
16
ASN
67
C
SER
68
n
17
SER
68
C
ARG
69
n
18
ARG
69
C
GLU
70
n
19
GLU
70
C
PRO
71
n
20
PRO
71
C
SER
72
n
21
SER
72
C
GLN
73
n
22
GLN
73
C
VAL
74
n
23
VAL
74
C
ILE
75
n
24
ILE
75
C
PHE
76
n
25
PHE
76
C
CYS
77
n
26
CYS
77
C
ASN
78
n
27
ASN
78
C
ARG
79
n
28
ARG
79
C
SER
80
n
29
SER
80
C
PRO
81
n
30
PRO
81
C
ARG
82
n
31
ARG
82
C
VAL
83
n
32
VAL
83
C
VAL
84
n
33
VAL
84
C
LEU
85
n
34
LEU
85
C
PRO
86
n
35
PRO
86
C
VAL
87
n
36
VAL
87
C
TRP
88
n
37
TRP
88
C
LEU
89
n
38
LEU
89
C
ASN
90
n
39
ASN
90
C
PHE
91
n
40
PHE
91
C
ASP
92
n
41
ASP
92
C
GLY
93
n
42
GLY
93
C
GLU
94
n
43
GLU
94
C
PRO
95
n
44
PRO
95
C
GLN
96
n
45
GLN
96
C
PRO
97
n
46
PRO
97
C
TYR
98
n
47
TYR
98
C
PRO
99
n
48
PRO
99
C
THR
100
n
49
THR
100
C
LEU
101
n
50
LEU
101
C
PRO
102
n
51
PRO
102
C
PRO
103
n
52
PRO
103
C
GLY
104
n
53
GLY
104
C
THR
105
n
54
THR
105
C
GLY
106
n
55
GLY
106
C
ARG
107
n
56
ARG
107
C
ARG
108
n
57
ARG
108
C
ILE
109
n
58
ILE
109
C
HIS
110
n
59
HIS
110
C
SER
111
n
60
SER
111
C
TYR
112
n
61
TYR
112
C
ARG
113
n
62
ARG
113
C
GLY
114
n
63
GLY
114
C
HIS
115
n
64
HIS
115
C
LEU
116
n
65
LEU
116
C
TRP
117
n
66
TRP
117
C
LEU
118
n
67
LEU
118
C
PHE
119
n
68
PHE
119
C
ARG
120
n
69
ARG
120
C
ASP
121
n
70
ASP
121
C
ALA
122
n
71
ALA
122
C
GLY
123
n
72
GLY
123
C
THR
124
n
73
THR
124
C
HIS
125
n
74
HIS
125
C
ASP
126
n
75
ASP
126
C
GLY
127
n
76
GLY
127
C
LEU
128
n
77
LEU
128
C
LEU
129
n
78
LEU
129
C
VAL
130
n
79
VAL
130
C
ASN
131
n
80
ASN
131
C
GLN
132
n
81
GLN
132
C
THR
133
n
82
THR
133
C
GLU
134
n
83
GLU
134
C
LEU
135
n
84
LEU
135
C
PHE
136
n
85
PHE
136
C
VAL
137
n
86
VAL
137
C
PRO
138
n
87
PRO
138
C
SER
139
n
88
SER
139
C
LEU
140
n
89
LEU
140
C
ASN
141
n
90
ASN
141
C
VAL
142
n
91
VAL
142
C
ASP
143
n
92
ASP
143
C
GLY
144
n
93
GLY
144
C
GLN
145
n
94
GLN
145
C
PRO
146
n
95
PRO
146
C
ILE
147
n
96
ILE
147
C
PHE
148
n
97
PHE
148
C
ALA
149
n
98
ALA
149
C
ASN
150
n
99
ASN
150
C
ILE
151
n
100
ILE
151
C
THR
152
n
101
THR
152
C
LEU
153
n
102
LEU
153
C
PRO
154
n
103
PRO
154
C
VAL
155
n
104
VAL
155
C
TYR
156
n
105
TYR
156
C
THR
157
n
106
THR
157
C
LEU
158
n
107
LEU
158
C
LYS
159
n
108
LYS
159
C
GLU
160
n
109
GLU
160
C
ARG
161
n
110
ARG
161
C
CYS
162
n
111
CYS
162
C
LEU
163
n
112
LEU
163
C
GLN
164
n
113
GLN
164
C
VAL
165
n
114
VAL
165
C
VAL
166
n
115
VAL
166
C
ARG
167
n
116
ARG
167
C
SER
168
n
117
SER
168
C
LEU
169
n
118
LEU
169
C
VAL
170
n
119
VAL
170
C
LYS
171
n
120
LYS
171
C
PRO
172
n
121
PRO
172
C
GLU
173
n
122
GLU
173
C
ASN
174
n
123
ASN
174
C
TYR
175
n
124
TYR
175
C
ARG
176
n
125
ARG
176
C
ARG
177
n
126
ARG
177
C
LEU
178
n
127
LEU
178
C
ASP
179
n
128
ASP
179
C
ILE
180
n
129
ILE
180
C
VAL
181
n
130
VAL
181
C
ARG
182
n
131
ARG
182
C
SER
183
n
132
SER
183
C
LEU
184
n
133
LEU
184
C
TYR
185
n
134
TYR
185
C
GLU
186
n
135
GLU
186
C
ASP
187
n
136
ASP
187
C
LEU
188
n
137
LEU
188
C
GLU
189
n
138
GLU
189
C
ASP
190
n
139
ASP
190
C
HIS
191
n
140
HIS
191
C
PRO
192
n
141
PRO
192
C
ASN
193
n
142
ASN
193
C
VAL
194
n
143
VAL
194
C
GLN
195
n
144
GLN
195
C
LYS
196
n
145
LYS
196
C
ASP
197
n
146
ASP
197
C
LEU
198
n
147
LEU
198
C
GLU
199
n
148
GLU
199
C
ARG
200
n
149
ARG
200
C
LEU
201
n
150
LEU
201
C
THR
202
n
151
THR
202
C
GLN
203
n
152
GLN
203
C
GLU
204
n
153
GLU
204
C
ARG
205
n
154
ARG
205
C
ILE
206
n
155
ILE
206
C
ALA
207
n
156
ALA
207
C
HIS
208
n
157
HIS
208
C
GLN
209
n
158
GLN
209
C
ARG
210
n
159
ARG
210
C
n
160
211
C
n
161
212
C
n
162
213
C
n
1
549
D
n
2
550
D
n
3
551
D
n
4
552
D
n
5
553
D
n
6
554
D
n
7
555
D
n
8
556
D
n
9
557
D
n
10
558
D
n
11
559
D
GLU
560
n
12
GLU
560
D
MET
561
n
13
MET
561
D
LEU
562
n
14
LEU
562
D
ALA
563
n
15
ALA
563
D
HYP
564
n
16
HYP
564
D
TYR
565
n
17
TYR
565
D
ILE
566
n
18
ILE
566
D
PRO
567
n
19
PRO
567
D
MET
568
n
20
MET
568
D
ASP
569
n
21
ASP
569
D
ASP
570
n
22
ASP
570
D
ASP
571
n
23
ASP
571
D
PHE
572
n
24
PHE
572
D
GLN
573
n
25
GLN
573
D
LEU
574
n
26
LEU
574
D
ARG
575
n
27
ARG
575
D
SER
576
n
28
SER
576
D
PHE
577
n
29
PHE
577
D
n
30
578
D
n
31
579
D
n
32
580
D
n
33
581
D
n
34
582
D
author_and_software_defined_assembly
PISA
4
tetrameric
software_defined_assembly
PISA
8
octameric
6830
-59
18010
17380
-132
32310
D
HYP
564
4-HYDROXYPROLINE
D
HYP
16
PRO
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_775
-y+2,-x+2,-z+1/2
crystal symmetry operation
117.8800000000
117.8800000000
121.6900000000
A
O
GLN
49
A
O
GLN
49
A
N
LYS
46
A
N
LYS
46
A
N
TYR
45
A
N
TYR
45
A
O
GLY
76
A
O
GLY
76
A
O
VAL
75
A
O
VAL
75
A
N
MET
6
A
N
MET
6
A
N
ILE
7
A
N
ILE
7
A
O
ILE
14
A
O
ILE
14
A
N
THR
13
A
N
THR
13
B
O
ILE
30
B
O
ILE
14
B
O
PHE
29
B
O
PHE
13
B
N
LEU
21
B
N
LEU
5
B
N
LYS
20
B
N
LYS
4
B
O
VAL
60
B
O
VAL
44
C
N
LEU
129
C
N
LEU
78
C
O
THR
152
C
O
THR
101
C
O
ALA
149
C
O
ALA
98
C
N
CYS
77
C
N
CYS
26
C
N
VAL
74
C
N
VAL
23
C
O
ILE
109
C
O
ILE
58
C
N
GLY
106
C
N
GLY
55
D
O
PHE
572
D
O
PHE
24
C
O
GLN
96
C
O
GLN
45
C
N
TRP
88
C
N
TRP
37
C
N
VAL
87
C
N
VAL
36
C
O
LEU
118
C
O
LEU
67
1
A
PRO
105
A
PRO
105
1
Y
1
A
GLN
106
A
GLN
106
1
Y
1
A
ASP
107
A
ASP
107
1
Y
1
A
SER
108
A
SER
108
1
Y
1
A
GLY
109
A
GLY
109
1
Y
1
A
SER
110
A
SER
110
1
Y
1
A
SER
111
A
SER
111
1
Y
1
A
ALA
112
A
ALA
112
1
Y
1
A
ASN
113
A
ASN
113
1
Y
1
A
GLU
114
A
GLU
114
1
Y
1
A
GLN
115
A
GLN
115
1
Y
1
A
ALA
116
A
ALA
116
1
Y
1
A
VAL
117
A
VAL
117
1
Y
1
A
GLN
118
A
GLN
118
1
Y
1
B
GLY
50
B
GLY
34
1
Y
1
B
GLN
51
B
GLN
35
1
Y
1
B
PHE
52
B
PHE
36
1
Y
1
B
ALA
53
B
ALA
37
1
Y
1
B
GLU
54
B
GLU
38
1
Y
1
B
ASN
55
B
ASN
39
1
Y
1
B
GLU
56
B
GLU
40
1
Y
1
B
THR
57
B
THR
41
1
Y
1
C
GLY
52
C
GLY
1
1
Y
1
C
SER
53
C
SER
2
1
Y
1
C
MET
54
C
MET
3
1
Y
1
C
GLU
55
C
GLU
4
1
Y
1
C
ALA
56
C
ALA
5
1
Y
1
C
GLY
57
C
GLY
6
1
Y
1
C
ARG
58
C
ARG
7
1
Y
1
C
PRO
59
C
PRO
8
1
Y
1
C
ARG
60
C
ARG
9
1
Y
1
C
MET
211
C
MET
160
1
Y
1
C
GLY
212
C
GLY
161
1
Y
1
C
ASP
213
C
ASP
162
1
Y
1
D
PRO
549
D
PRO
1
1
Y
1
D
PHE
550
D
PHE
2
1
Y
1
D
SER
551
D
SER
3
1
Y
1
D
THR
552
D
THR
4
1
Y
1
D
GLN
553
D
GLN
5
1
Y
1
D
ASP
554
D
ASP
6
1
Y
1
D
THR
555
D
THR
7
1
Y
1
D
ASP
556
D
ASP
8
1
Y
1
D
LEU
557
D
LEU
9
1
Y
1
D
ASP
558
D
ASP
10
1
Y
1
D
LEU
559
D
LEU
11
1
Y
1
D
ASP
578
D
ASP
30
1
Y
1
D
GLN
579
D
GLN
31
1
Y
1
D
LEU
580
D
LEU
32
1
Y
1
D
SER
581
D
SER
33
1
Y
1
D
PRO
582
D
PRO
34
1
Y
1
A
HIS
10
54.44
-118.21
1
A
ASP
47
66.30
-119.11
1
A
ASP
83
-141.20
18.17
1
C
ARG
79
-97.03
46.76
1
C
ASN
90
-69.36
-164.15
1
C
SER
111
-115.72
-162.81
1
C
ARG
176
-69.95
1.53
1
C
GLN
209
-178.23
2.63
1
D
MET
568
73.21
66.98
PROTEIN_HYP.PAR
WATER.TOP
ION.PARAM
PROTEIN_HYP.TOP
WATER_REP.PARAM
ION.TOP
36.0
0.00
0.00
0.00
0.00
0.00
0.00
0.2770000
0.008
0.2250000
0.2250000
2.00
29.26
1108
23019
4.8
76.2
RANDOM
1
Isotropic
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1VCB.pdb
Engh & Huber
FLAT MODEL
38.5116
0.341289
0.35
0.29
2.00
29.26
84
2994
5
0
2905
0.006
1.3
23.8
0.91
0.3520000
0.035
0.2890000
2.13
102
1978
1546
6
4.9
42.3
17.0
2
30
1LQB
24245
0.0600000
1
20
18.5
76
2
2.07
1
0.4900000
30
phasing
EPMR
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
SCALEPACK
Crystal structure of a hydroxylated HIF-1 alpha peptide bound to the pVHL/elongin-C/elongin-B complex
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
A
THR
23
A
THR
23
HELX_P
A
LYS
36
A
LYS
36
1
1
14
A
PRO
38
A
PRO
38
HELX_P
A
ASP
40
A
ASP
40
5
2
3
A
PRO
100
A
PRO
100
HELX_P
A
LYS
104
A
LYS
104
5
3
5
B
ARG
33
B
ARG
17
HELX_P
B
LEU
37
B
LEU
21
1
4
5
B
SER
39
B
SER
23
HELX_P
B
LEU
46
B
LEU
30
1
5
8
B
PRO
66
B
PRO
50
HELX_P
B
THR
84
B
THR
68
1
6
19
B
ALA
96
B
ALA
80
HELX_P
B
GLU
98
B
GLU
82
5
7
3
B
ILE
99
B
ILE
83
HELX_P
B
ASP
111
B
ASP
95
1
8
13
C
THR
157
C
THR
106
HELX_P
C
VAL
170
C
VAL
119
1
9
14
C
LYS
171
C
LYS
120
HELX_P
C
LEU
178
C
LEU
127
5
10
8
C
ARG
182
C
ARG
131
HELX_P
C
ASP
190
C
ASP
139
1
11
9
C
ASN
193
C
ASN
142
HELX_P
C
HIS
208
C
HIS
157
1
12
16
covale
1.343
both
D
ALA
563
D
C
ALA
15
1_555
D
HYP
564
D
N
HYP
16
1_555
covale
1.328
both
D
HYP
564
D
C
HYP
16
1_555
D
TYR
565
D
N
TYR
17
1_555
GENE REGULATION
protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin, prolyl hydroxylation, GENE REGULATION
B
GLY
48
B
GLY
32
1
B
PRO
49
B
PRO
33
-0.13
ELOB_HUMAN
UNP
1
1
Q15370
MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR
ADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ
ELOC_HUMAN
UNP
2
17
Q15369
MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA
PEIALELLMAANFLDC
VHL_HUMAN
UNP
3
52
P40337
GSMEAGRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRDAGTHDGLLVN
QTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQRM
GD
HIF1A_HUMAN
UNP
4
549
Q16665
PFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSP
1
118
1LQB
1
118
Q15370
A
1
1
118
17
112
1LQB
17
112
Q15369
B
2
1
96
52
213
1LQB
52
213
P40337
C
3
1
162
549
582
1LQB
549
582
Q16665
D
4
1
34
4
PRO
modified residue
HYP
564
1LQB
D
Q16665
UNP
564
16
8
5
3
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
49
A
GLN
49
A
LEU
50
A
LEU
50
A
GLN
42
A
GLN
42
A
LYS
46
A
LYS
46
A
ALA
73
A
ALA
73
A
PHE
79
A
PHE
79
A
ASP
2
A
ASP
2
A
ARG
9
A
ARG
9
A
THR
12
A
THR
12
A
LYS
19
A
LYS
19
B
GLU
28
B
GLU
12
B
LYS
32
B
LYS
16
B
TYR
18
B
TYR
2
B
ILE
22
B
ILE
6
B
GLU
59
B
GLU
43
B
ASN
61
B
ASN
45
C
LEU
129
C
LEU
78
C
VAL
130
C
VAL
79
C
ILE
147
C
ILE
96
C
THR
152
C
THR
101
C
PRO
71
C
PRO
20
C
ASN
78
C
ASN
27
C
THR
105
C
THR
54
C
TYR
112
C
TYR
61
D
PHE
572
D
PHE
24
D
GLN
573
D
GLN
25
C
PRO
95
C
PRO
44
C
PRO
97
C
PRO
46
C
VAL
84
C
VAL
33
C
LEU
89
C
LEU
38
C
LEU
116
C
LEU
65
C
ASP
121
C
ASP
70
BINDING SITE FOR RESIDUE SO4 A 801
A
SO4
801
Software
2
A
ALA
73
A
ALA
73
2
1_555
A
THR
74
A
THR
74
2
1_555
96
P 43 21 2