0.023802
-0.000000
0.000000
0.000000
0.023215
0.000000
0.000000
0.000000
0.010843
0.00000
0.00000
0.00000
Mathieu, M.
Mikol, V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
42.013
43.075
92.225
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C19 H35 N3 O5
385.498
ACTINONIN
2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2-HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL-PROPYL]-AMIDE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Ni 2
58.693
NICKEL (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
C
N
76
N
O
N
77
N
N
N
78
N
O
N
79
R
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
C
N
85
N
C
N
86
N
C
N
87
N
N
N
88
S
C
N
89
N
C
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
O
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
C
N
98
N
C
N
99
N
C
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
R
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
S
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
N
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
Y
204
N
C
Y
205
N
N
Y
206
N
C
Y
207
N
C
Y
208
N
N
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
S
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
S
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
NI
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
N
358
N
O
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
R
C
N
372
N
O
N
373
N
C
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
N
395
N
O
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
N
413
N
C
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
Y
202
N
sing
Y
203
N
doub
Y
204
N
doub
N
205
N
sing
Y
206
N
sing
N
207
N
sing
Y
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
Y
310
N
doub
Y
311
N
sing
Y
312
N
sing
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
320
951
962
10.1016/S0022-2836(02)00549-1
12126617
The crystal structures of four peptide deformylases bound to the antibiotic actinonin reveal two distinct types: a platform for the structure-based design of antibacterial agents.
2002
10.2210/pdb1lqy/pdb
pdb_00001lqy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
95
1
IMAGE PLATE
1998-12-10
MAC Science DIP-2000
Ni MIRROR + Ni FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ENRAF-NONIUS
20406.520
PEPTIDE deformylase 2
3.5.1.88
1
man
polymer
58.693
NICKEL (II) ION
2
syn
non-polymer
385.498
ACTINONIN
1
syn
non-polymer
18.015
water
261
nat
water
PDF 2, POLYPEPTIDE DEFORMYLASE 2
no
no
MITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAVHVTDE
NGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNG
IMFYDRINPADPFQVPDGAIPIGR
MITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAVHVTDE
NGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNG
IMFYDRINPADPFQVPDGAIPIGR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Geobacillus
Escherichia
sample
1422
Geobacillus stearothermophilus
562
Escherichia coli
1
2.1
39.80
VAPOR DIFFUSION, HANGING DROP
7.5
7% PEG6000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-07-24
1
1
2008-04-28
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1LQW is the CRYSTAL STRUCTURE OF S.AUREUS PEPTIDE DEFORMYLASE.
1LRU is the CRYSTAL STRUCTURE OF E.coli deformylase.
1LRY IS the CRYSTAL STRUCTURE OF P.aeruginosa deformylase.
RCSB
Y
RCSB
2002-05-14
REL
NI
NICKEL (II) ION
BB2
ACTINONIN
HOH
water
NI
1
2
NI
NI
301
A
NI
2
2
NI
NI
302
A
ATN
1
3
BB2
BB2
401
A
WAT
1
4
HOH
HOH
402
A
WAT
2
4
HOH
HOH
403
A
WAT
3
4
HOH
HOH
404
A
WAT
4
4
HOH
HOH
405
A
WAT
5
4
HOH
HOH
406
A
WAT
6
4
HOH
HOH
407
A
WAT
7
4
HOH
HOH
408
A
WAT
8
4
HOH
HOH
409
A
WAT
9
4
HOH
HOH
410
A
WAT
10
4
HOH
HOH
411
A
WAT
11
4
HOH
HOH
412
A
WAT
12
4
HOH
HOH
413
A
WAT
13
4
HOH
HOH
414
A
WAT
14
4
HOH
HOH
415
A
WAT
15
4
HOH
HOH
416
A
WAT
16
4
HOH
HOH
417
A
WAT
17
4
HOH
HOH
418
A
WAT
18
4
HOH
HOH
419
A
WAT
19
4
HOH
HOH
420
A
WAT
20
4
HOH
HOH
421
A
WAT
21
4
HOH
HOH
422
A
WAT
22
4
HOH
HOH
423
A
WAT
23
4
HOH
HOH
424
A
WAT
24
4
HOH
HOH
425
A
WAT
25
4
HOH
HOH
426
A
WAT
26
4
HOH
HOH
427
A
WAT
27
4
HOH
HOH
428
A
WAT
28
4
HOH
HOH
429
A
WAT
29
4
HOH
HOH
430
A
WAT
30
4
HOH
HOH
431
A
WAT
31
4
HOH
HOH
432
A
WAT
32
4
HOH
HOH
433
A
WAT
33
4
HOH
HOH
434
A
WAT
34
4
HOH
HOH
435
A
WAT
35
4
HOH
HOH
436
A
WAT
36
4
HOH
HOH
437
A
WAT
37
4
HOH
HOH
438
A
WAT
38
4
HOH
HOH
439
A
WAT
39
4
HOH
HOH
440
A
WAT
40
4
HOH
HOH
441
A
WAT
41
4
HOH
HOH
442
A
WAT
42
4
HOH
HOH
443
A
WAT
43
4
HOH
HOH
444
A
WAT
44
4
HOH
HOH
445
A
WAT
45
4
HOH
HOH
446
A
WAT
46
4
HOH
HOH
447
A
WAT
47
4
HOH
HOH
448
A
WAT
48
4
HOH
HOH
449
A
WAT
49
4
HOH
HOH
450
A
WAT
50
4
HOH
HOH
451
A
WAT
51
4
HOH
HOH
452
A
WAT
52
4
HOH
HOH
453
A
WAT
53
4
HOH
HOH
454
A
WAT
54
4
HOH
HOH
455
A
WAT
55
4
HOH
HOH
456
A
WAT
56
4
HOH
HOH
457
A
WAT
57
4
HOH
HOH
458
A
WAT
58
4
HOH
HOH
459
A
WAT
59
4
HOH
HOH
460
A
WAT
60
4
HOH
HOH
461
A
WAT
61
4
HOH
HOH
462
A
WAT
62
4
HOH
HOH
463
A
WAT
63
4
HOH
HOH
464
A
WAT
64
4
HOH
HOH
465
A
WAT
65
4
HOH
HOH
466
A
WAT
66
4
HOH
HOH
467
A
WAT
67
4
HOH
HOH
468
A
WAT
68
4
HOH
HOH
469
A
WAT
69
4
HOH
HOH
470
A
WAT
70
4
HOH
HOH
471
A
WAT
71
4
HOH
HOH
472
A
WAT
72
4
HOH
HOH
473
A
WAT
73
4
HOH
HOH
474
A
WAT
74
4
HOH
HOH
475
A
WAT
75
4
HOH
HOH
476
A
WAT
76
4
HOH
HOH
477
A
WAT
77
4
HOH
HOH
478
A
WAT
78
4
HOH
HOH
479
A
WAT
79
4
HOH
HOH
480
A
WAT
80
4
HOH
HOH
481
A
WAT
81
4
HOH
HOH
482
A
WAT
82
4
HOH
HOH
483
A
WAT
83
4
HOH
HOH
484
A
WAT
84
4
HOH
HOH
485
A
WAT
85
4
HOH
HOH
486
A
WAT
86
4
HOH
HOH
487
A
WAT
87
4
HOH
HOH
488
A
WAT
88
4
HOH
HOH
489
A
WAT
89
4
HOH
HOH
490
A
WAT
90
4
HOH
HOH
491
A
WAT
91
4
HOH
HOH
492
A
WAT
92
4
HOH
HOH
493
A
WAT
93
4
HOH
HOH
494
A
WAT
94
4
HOH
HOH
495
A
WAT
95
4
HOH
HOH
496
A
WAT
96
4
HOH
HOH
497
A
WAT
97
4
HOH
HOH
498
A
WAT
98
4
HOH
HOH
499
A
WAT
99
4
HOH
HOH
500
A
WAT
100
4
HOH
HOH
501
A
WAT
101
4
HOH
HOH
502
A
WAT
102
4
HOH
HOH
503
A
WAT
103
4
HOH
HOH
504
A
WAT
104
4
HOH
HOH
505
A
WAT
105
4
HOH
HOH
506
A
WAT
106
4
HOH
HOH
507
A
WAT
107
4
HOH
HOH
508
A
WAT
108
4
HOH
HOH
509
A
WAT
109
4
HOH
HOH
510
A
WAT
110
4
HOH
HOH
511
A
WAT
111
4
HOH
HOH
512
A
WAT
112
4
HOH
HOH
513
A
WAT
113
4
HOH
HOH
514
A
WAT
114
4
HOH
HOH
515
A
WAT
115
4
HOH
HOH
516
A
WAT
116
4
HOH
HOH
517
A
WAT
117
4
HOH
HOH
518
A
WAT
118
4
HOH
HOH
519
A
WAT
119
4
HOH
HOH
520
A
WAT
120
4
HOH
HOH
521
A
WAT
121
4
HOH
HOH
522
A
WAT
122
4
HOH
HOH
523
A
WAT
123
4
HOH
HOH
524
A
WAT
124
4
HOH
HOH
525
A
WAT
125
4
HOH
HOH
526
A
WAT
126
4
HOH
HOH
527
A
WAT
127
4
HOH
HOH
528
A
WAT
128
4
HOH
HOH
529
A
WAT
129
4
HOH
HOH
530
A
WAT
130
4
HOH
HOH
531
A
WAT
131
4
HOH
HOH
532
A
WAT
132
4
HOH
HOH
533
A
WAT
133
4
HOH
HOH
534
A
WAT
134
4
HOH
HOH
535
A
WAT
135
4
HOH
HOH
536
A
WAT
136
4
HOH
HOH
537
A
WAT
137
4
HOH
HOH
538
A
WAT
138
4
HOH
HOH
539
A
WAT
139
4
HOH
HOH
540
A
WAT
140
4
HOH
HOH
541
A
WAT
141
4
HOH
HOH
542
A
WAT
142
4
HOH
HOH
543
A
WAT
143
4
HOH
HOH
544
A
WAT
144
4
HOH
HOH
545
A
WAT
145
4
HOH
HOH
546
A
WAT
146
4
HOH
HOH
547
A
WAT
147
4
HOH
HOH
548
A
WAT
148
4
HOH
HOH
549
A
WAT
149
4
HOH
HOH
550
A
WAT
150
4
HOH
HOH
551
A
WAT
151
4
HOH
HOH
552
A
WAT
152
4
HOH
HOH
553
A
WAT
153
4
HOH
HOH
554
A
WAT
154
4
HOH
HOH
555
A
WAT
155
4
HOH
HOH
556
A
WAT
156
4
HOH
HOH
557
A
WAT
157
4
HOH
HOH
558
A
WAT
158
4
HOH
HOH
559
A
WAT
159
4
HOH
HOH
560
A
WAT
160
4
HOH
HOH
561
A
WAT
161
4
HOH
HOH
562
A
WAT
162
4
HOH
HOH
563
A
WAT
163
4
HOH
HOH
564
A
WAT
164
4
HOH
HOH
565
A
WAT
165
4
HOH
HOH
566
A
WAT
166
4
HOH
HOH
567
A
WAT
167
4
HOH
HOH
568
A
WAT
168
4
HOH
HOH
569
A
WAT
169
4
HOH
HOH
570
A
WAT
170
4
HOH
HOH
571
A
WAT
171
4
HOH
HOH
572
A
WAT
172
4
HOH
HOH
573
A
WAT
173
4
HOH
HOH
574
A
WAT
174
4
HOH
HOH
575
A
WAT
175
4
HOH
HOH
576
A
WAT
176
4
HOH
HOH
577
A
WAT
177
4
HOH
HOH
578
A
WAT
178
4
HOH
HOH
579
A
WAT
179
4
HOH
HOH
580
A
WAT
180
4
HOH
HOH
581
A
WAT
181
4
HOH
HOH
582
A
WAT
182
4
HOH
HOH
583
A
WAT
183
4
HOH
HOH
584
A
WAT
184
4
HOH
HOH
585
A
WAT
185
4
HOH
HOH
586
A
WAT
186
4
HOH
HOH
587
A
WAT
187
4
HOH
HOH
588
A
WAT
188
4
HOH
HOH
589
A
WAT
189
4
HOH
HOH
590
A
WAT
190
4
HOH
HOH
591
A
WAT
191
4
HOH
HOH
592
A
WAT
192
4
HOH
HOH
593
A
WAT
193
4
HOH
HOH
594
A
WAT
194
4
HOH
HOH
595
A
WAT
195
4
HOH
HOH
596
A
WAT
196
4
HOH
HOH
597
A
WAT
197
4
HOH
HOH
598
A
WAT
198
4
HOH
HOH
599
A
WAT
199
4
HOH
HOH
600
A
WAT
200
4
HOH
HOH
601
A
WAT
201
4
HOH
HOH
602
A
WAT
202
4
HOH
HOH
603
A
WAT
203
4
HOH
HOH
604
A
WAT
204
4
HOH
HOH
605
A
WAT
205
4
HOH
HOH
606
A
WAT
206
4
HOH
HOH
607
A
WAT
207
4
HOH
HOH
608
A
WAT
208
4
HOH
HOH
609
A
WAT
209
4
HOH
HOH
610
A
WAT
210
4
HOH
HOH
611
A
WAT
211
4
HOH
HOH
612
A
WAT
212
4
HOH
HOH
613
A
WAT
213
4
HOH
HOH
614
A
WAT
214
4
HOH
HOH
615
A
WAT
215
4
HOH
HOH
616
A
WAT
216
4
HOH
HOH
617
A
WAT
217
4
HOH
HOH
618
A
WAT
218
4
HOH
HOH
619
A
WAT
219
4
HOH
HOH
620
A
WAT
220
4
HOH
HOH
621
A
WAT
221
4
HOH
HOH
622
A
WAT
222
4
HOH
HOH
623
A
WAT
223
4
HOH
HOH
624
A
WAT
224
4
HOH
HOH
625
A
WAT
225
4
HOH
HOH
626
A
WAT
226
4
HOH
HOH
627
A
WAT
227
4
HOH
HOH
628
A
WAT
228
4
HOH
HOH
629
A
WAT
229
4
HOH
HOH
630
A
WAT
230
4
HOH
HOH
631
A
WAT
231
4
HOH
HOH
632
A
WAT
232
4
HOH
HOH
633
A
WAT
233
4
HOH
HOH
634
A
WAT
234
4
HOH
HOH
635
A
WAT
235
4
HOH
HOH
636
A
WAT
236
4
HOH
HOH
637
A
WAT
237
4
HOH
HOH
638
A
WAT
238
4
HOH
HOH
639
A
WAT
239
4
HOH
HOH
640
A
WAT
240
4
HOH
HOH
641
A
WAT
241
4
HOH
HOH
642
A
WAT
242
4
HOH
HOH
643
A
WAT
243
4
HOH
HOH
644
A
WAT
244
4
HOH
HOH
645
A
WAT
245
4
HOH
HOH
646
A
WAT
246
4
HOH
HOH
647
A
WAT
247
4
HOH
HOH
648
A
WAT
248
4
HOH
HOH
649
A
WAT
249
4
HOH
HOH
650
A
WAT
250
4
HOH
HOH
651
A
WAT
251
4
HOH
HOH
652
A
WAT
252
4
HOH
HOH
653
A
WAT
253
4
HOH
HOH
654
A
WAT
254
4
HOH
HOH
655
A
WAT
255
4
HOH
HOH
656
A
WAT
256
4
HOH
HOH
657
A
WAT
257
4
HOH
HOH
658
A
WAT
258
4
HOH
HOH
659
A
WAT
259
4
HOH
HOH
660
A
WAT
260
4
HOH
HOH
661
A
WAT
261
4
HOH
HOH
662
A
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
THR
3
n
3
THR
3
A
MET
4
n
4
MET
4
A
LYS
5
n
5
LYS
5
A
ASP
6
n
6
ASP
6
A
ILE
7
n
7
ILE
7
A
ILE
8
n
8
ILE
8
A
LYS
9
n
9
LYS
9
A
GLU
10
n
10
GLU
10
A
GLY
11
n
11
GLY
11
A
HIS
12
n
12
HIS
12
A
PRO
13
n
13
PRO
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
ARG
16
n
16
ARG
16
A
LYS
17
n
17
LYS
17
A
VAL
18
n
18
VAL
18
A
ALA
19
n
19
ALA
19
A
GLU
20
n
20
GLU
20
A
PRO
21
n
21
PRO
21
A
VAL
22
n
22
VAL
22
A
PRO
23
n
23
PRO
23
A
LEU
24
n
24
LEU
24
A
PRO
25
n
25
PRO
25
A
PRO
26
n
26
PRO
26
A
SER
27
n
27
SER
27
A
GLU
28
n
28
GLU
28
A
GLU
29
n
29
GLU
29
A
ASP
30
n
30
ASP
30
A
LYS
31
n
31
LYS
31
A
ARG
32
n
32
ARG
32
A
ILE
33
n
33
ILE
33
A
LEU
34
n
34
LEU
34
A
GLN
35
n
35
GLN
35
A
SER
36
n
36
SER
36
A
LEU
37
n
37
LEU
37
A
LEU
38
n
38
LEU
38
A
ASP
39
n
39
ASP
39
A
TYR
40
n
40
TYR
40
A
VAL
41
n
41
VAL
41
A
LYS
42
n
42
LYS
42
A
MET
43
n
43
MET
43
A
SER
44
n
44
SER
44
A
GLN
45
n
45
GLN
45
A
ASP
46
n
46
ASP
46
A
PRO
47
n
47
PRO
47
A
GLU
48
n
48
GLU
48
A
LEU
49
n
49
LEU
49
A
ALA
50
n
50
ALA
50
A
ALA
51
n
51
ALA
51
A
LYS
52
n
52
LYS
52
A
TYR
53
n
53
TYR
53
A
GLY
54
n
54
GLY
54
A
LEU
55
n
55
LEU
55
A
ARG
56
n
56
ARG
56
A
PRO
57
n
57
PRO
57
A
GLY
58
n
58
GLY
58
A
ILE
59
n
59
ILE
59
A
GLY
60
n
60
GLY
60
A
LEU
61
n
61
LEU
61
A
ALA
62
n
62
ALA
62
A
ALA
63
n
63
ALA
63
A
PRO
64
n
64
PRO
64
A
GLN
65
n
65
GLN
65
A
ILE
66
n
66
ILE
66
A
ASN
67
n
67
ASN
67
A
VAL
68
n
68
VAL
68
A
SER
69
n
69
SER
69
A
LYS
70
n
70
LYS
70
A
ARG
71
n
71
ARG
71
A
MET
72
n
72
MET
72
A
ILE
73
n
73
ILE
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
HIS
76
n
76
HIS
76
A
VAL
77
n
77
VAL
77
A
THR
78
n
78
THR
78
A
ASP
79
n
79
ASP
79
A
GLU
80
n
80
GLU
80
A
ASN
81
n
81
ASN
81
A
GLY
82
n
82
GLY
82
A
THR
83
n
83
THR
83
A
LEU
84
n
84
LEU
84
A
TYR
85
n
85
TYR
85
A
SER
86
n
86
SER
86
A
TYR
87
n
87
TYR
87
A
ALA
88
n
88
ALA
88
A
LEU
89
n
89
LEU
89
A
PHE
90
n
90
PHE
90
A
ASN
91
n
91
ASN
91
A
PRO
92
n
92
PRO
92
A
LYS
93
n
93
LYS
93
A
ILE
94
n
94
ILE
94
A
VAL
95
n
95
VAL
95
A
SER
96
n
96
SER
96
A
HIS
97
n
97
HIS
97
A
SER
98
n
98
SER
98
A
VAL
99
n
99
VAL
99
A
GLN
100
n
100
GLN
100
A
GLN
101
n
101
GLN
101
A
CYS
102
n
102
CYS
102
A
TYR
103
n
103
TYR
103
A
LEU
104
n
104
LEU
104
A
THR
105
n
105
THR
105
A
THR
106
n
106
THR
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
GLY
109
n
109
GLY
109
A
CYS
110
n
110
CYS
110
A
LEU
111
n
111
LEU
111
A
SER
112
n
112
SER
112
A
VAL
113
n
113
VAL
113
A
ASP
114
n
114
ASP
114
A
ARG
115
n
115
ARG
115
A
ASP
116
n
116
ASP
116
A
VAL
117
n
117
VAL
117
A
PRO
118
n
118
PRO
118
A
GLY
119
n
119
GLY
119
A
TYR
120
n
120
TYR
120
A
VAL
121
n
121
VAL
121
A
LEU
122
n
122
LEU
122
A
ARG
123
n
123
ARG
123
A
TYR
124
n
124
TYR
124
A
ALA
125
n
125
ALA
125
A
ARG
126
n
126
ARG
126
A
ILE
127
n
127
ILE
127
A
THR
128
n
128
THR
128
A
VAL
129
n
129
VAL
129
A
THR
130
n
130
THR
130
A
GLY
131
n
131
GLY
131
A
THR
132
n
132
THR
132
A
THR
133
n
133
THR
133
A
LEU
134
n
134
LEU
134
A
ASP
135
n
135
ASP
135
A
GLY
136
n
136
GLY
136
A
GLU
137
n
137
GLU
137
A
GLU
138
n
138
GLU
138
A
VAL
139
n
139
VAL
139
A
THR
140
n
140
THR
140
A
LEU
141
n
141
LEU
141
A
ARG
142
n
142
ARG
142
A
LEU
143
n
143
LEU
143
A
LYS
144
n
144
LYS
144
A
GLY
145
n
145
GLY
145
A
LEU
146
n
146
LEU
146
A
PRO
147
n
147
PRO
147
A
ALA
148
n
148
ALA
148
A
ILE
149
n
149
ILE
149
A
VAL
150
n
150
VAL
150
A
PHE
151
n
151
PHE
151
A
GLN
152
n
152
GLN
152
A
HIS
153
n
153
HIS
153
A
GLU
154
n
154
GLU
154
A
ILE
155
n
155
ILE
155
A
ASP
156
n
156
ASP
156
A
HIS
157
n
157
HIS
157
A
LEU
158
n
158
LEU
158
A
ASN
159
n
159
ASN
159
A
GLY
160
n
160
GLY
160
A
ILE
161
n
161
ILE
161
A
MET
162
n
162
MET
162
A
PHE
163
n
163
PHE
163
A
TYR
164
n
164
TYR
164
A
ASP
165
n
165
ASP
165
A
ARG
166
n
166
ARG
166
A
ILE
167
n
167
ILE
167
A
ASN
168
n
168
ASN
168
A
PRO
169
n
169
PRO
169
A
ALA
170
n
170
ALA
170
A
ASP
171
n
171
ASP
171
A
PRO
172
n
172
PRO
172
A
PHE
173
n
173
PHE
173
A
GLN
174
n
174
GLN
174
A
VAL
175
n
175
VAL
175
A
PRO
176
n
176
PRO
176
A
ASP
177
n
177
ASP
177
A
GLY
178
n
178
GLY
178
A
ALA
179
n
179
ALA
179
A
ILE
180
n
180
ILE
180
A
PRO
181
n
181
PRO
181
A
ILE
182
n
182
ILE
182
A
GLY
183
n
183
GLY
183
A
ARG
184
n
184
ARG
184
A
author_defined_assembly
1
monomeric
A
HIS
97
A
NE2
HIS
97
1_555
A
NI
302
C
NI
NI
1_555
A
HOH
485
E
O
HOH
1_555
91.8
A
HIS
97
A
NE2
HIS
97
1_555
A
NI
302
C
NI
NI
1_555
A
HOH
549
E
O
HOH
1_555
98.3
A
HOH
485
E
O
HOH
1_555
A
NI
302
C
NI
NI
1_555
A
HOH
549
E
O
HOH
1_555
92.0
A
HIS
97
A
NE2
HIS
97
1_555
A
NI
302
C
NI
NI
1_555
A
HOH
555
E
O
HOH
1_555
83.7
A
HOH
485
E
O
HOH
1_555
A
NI
302
C
NI
NI
1_555
A
HOH
555
E
O
HOH
1_555
84.9
A
HOH
549
E
O
HOH
1_555
A
NI
302
C
NI
NI
1_555
A
HOH
555
E
O
HOH
1_555
176.4
A
HIS
97
A
NE2
HIS
97
1_555
A
NI
302
C
NI
NI
1_555
A
HOH
617
E
O
HOH
1_555
95.0
A
HOH
485
E
O
HOH
1_555
A
NI
302
C
NI
NI
1_555
A
HOH
617
E
O
HOH
1_555
172.5
A
HOH
549
E
O
HOH
1_555
A
NI
302
C
NI
NI
1_555
A
HOH
617
E
O
HOH
1_555
90.3
A
HOH
555
E
O
HOH
1_555
A
NI
302
C
NI
NI
1_555
A
HOH
617
E
O
HOH
1_555
92.6
A
CYS
110
A
SG
CYS
110
1_555
A
NI
301
B
NI
NI
1_555
A
HIS
153
A
NE2
HIS
153
1_555
108.6
A
CYS
110
A
SG
CYS
110
1_555
A
NI
301
B
NI
NI
1_555
A
HIS
157
A
NE2
HIS
157
1_555
97.3
A
HIS
153
A
NE2
HIS
153
1_555
A
NI
301
B
NI
NI
1_555
A
HIS
157
A
NE2
HIS
157
1_555
100.1
A
CYS
110
A
SG
CYS
110
1_555
A
NI
301
B
NI
NI
1_555
A
BB2
401
D
O2
BB2
1_555
149.5
A
HIS
153
A
NE2
HIS
153
1_555
A
NI
301
B
NI
NI
1_555
A
BB2
401
D
O2
BB2
1_555
99.9
A
HIS
157
A
NE2
HIS
157
1_555
A
NI
301
B
NI
NI
1_555
A
BB2
401
D
O2
BB2
1_555
87.9
A
CYS
110
A
SG
CYS
110
1_555
A
NI
301
B
NI
NI
1_555
A
BB2
401
D
O4
BB2
1_555
88.8
A
HIS
153
A
NE2
HIS
153
1_555
A
NI
301
B
NI
NI
1_555
A
BB2
401
D
O4
BB2
1_555
102.9
A
HIS
157
A
NE2
HIS
157
1_555
A
NI
301
B
NI
NI
1_555
A
BB2
401
D
O4
BB2
1_555
153.0
A
BB2
401
D
O2
BB2
1_555
A
NI
301
B
NI
NI
1_555
A
BB2
401
D
O4
BB2
1_555
74.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
61
A
N
LEU
61
A
O
ALA
74
A
O
ALA
74
A
N
VAL
77
A
N
VAL
77
A
O
TYR
85
A
O
TYR
85
A
N
PHE
90
A
N
PHE
90
A
O
THR
132
A
O
THR
132
A
N
VAL
129
A
N
VAL
129
A
O
LEU
141
A
O
LEU
141
A
O
ARG
123
A
O
ARG
123
A
N
CYS
102
A
N
CYS
102
A
N
TYR
103
A
N
TYR
103
A
O
ILE
182
A
O
ILE
182
1
A
A
O
O
HOH
HOH
606
662
1.54
1
A
A
O
O
HOH
HOH
584
662
2.09
1
A
A
SD
O
MET
HOH
1
521
2.12
1
A
A
O
O
HOH
HOH
592
639
2.12
1_555
4_456
1
A
ARG
115
177.83
148.15
14.32
0.2420000
0.1610000
0.1610000
0.1610000
1.9
19.0
942
13368
13368
7
RANDOM
1
0.0
MOLECULAR REPLACEMENT
Engh & Huber
1.9
19.0
261
1723
29
0
1433
0.017
1.705
1.9
20
1LQY
13516
13516
0
0
0.0309000
1
24.7
3.9
98.0
1.90
1.97
12.8
1287
0.0830000
2.9
95.3
phasing
AMoRE
refinement
X-PLOR
98.1
data reduction
DENZO
data scaling
SCALEPACK
Crystal Structure of Bacillus stearothermophilus Peptide Deformylase Complexed with Antibiotic Actinonin
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
THR
3
A
THR
3
HELX_P
A
ILE
7
A
ILE
7
5
1
5
A
HIS
12
A
HIS
12
HELX_P
A
LYS
17
A
LYS
17
5
2
6
A
SER
27
A
SER
27
HELX_P
A
GLN
45
A
GLN
45
1
3
19
A
ASP
46
A
ASP
46
HELX_P
A
GLY
54
A
GLY
54
1
4
9
A
PRO
64
A
PRO
64
HELX_P
A
ASN
67
A
ASN
67
5
5
4
A
GLY
145
A
GLY
145
HELX_P
A
ASN
159
A
ASN
159
1
6
15
A
MET
162
A
MET
162
HELX_P
A
ILE
167
A
ILE
167
5
7
6
metalc
2.109
A
HIS
97
A
NE2
HIS
97
1_555
A
NI
302
C
NI
NI
1_555
metalc
2.693
A
CYS
110
A
SG
CYS
110
1_555
A
NI
301
B
NI
NI
1_555
metalc
2.133
A
HIS
153
A
NE2
HIS
153
1_555
A
NI
301
B
NI
NI
1_555
metalc
2.166
A
HIS
157
A
NE2
HIS
157
1_555
A
NI
301
B
NI
NI
1_555
metalc
2.151
A
NI
301
B
NI
NI
1_555
A
BB2
401
D
O2
BB2
1_555
metalc
2.239
A
NI
301
B
NI
NI
1_555
A
BB2
401
D
O4
BB2
1_555
metalc
2.267
A
NI
302
C
NI
NI
1_555
A
HOH
485
E
O
HOH
1_555
metalc
2.336
A
NI
302
C
NI
NI
1_555
A
HOH
549
E
O
HOH
1_555
metalc
2.463
A
NI
302
C
NI
NI
1_555
A
HOH
555
E
O
HOH
1_555
metalc
2.397
A
NI
302
C
NI
NI
1_555
A
HOH
617
E
O
HOH
1_555
HYDROLASE
ACTINONIN, INHIBITION, POLYPEPTIDE DEFORMYLASE, HYDROLASE
A
LEU
24
A
LEU
24
1
A
PRO
25
A
PRO
25
-0.19
DEF2_BACST
UNP
1
1
O31410
MITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAVHVTDE
NGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNG
IMFYDRINPADPFQVPDGAIPIGR
1
184
1LQY
1
184
O31410
A
1
1
184
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
GLY
60
A
GLY
60
A
ALA
62
A
ALA
62
A
MET
72
A
MET
72
A
THR
78
A
THR
78
A
LEU
84
A
LEU
84
A
HIS
97
A
HIS
97
A
ARG
126
A
ARG
126
A
THR
132
A
THR
132
A
GLU
138
A
GLU
138
A
LYS
144
A
LYS
144
A
ARG
123
A
ARG
123
A
TYR
124
A
TYR
124
A
GLN
101
A
GLN
101
A
LEU
104
A
LEU
104
A
ILE
180
A
ILE
180
A
ILE
182
A
ILE
182
BINDING SITE FOR RESIDUE NI A 301
A
NI
301
Software
5
BINDING SITE FOR RESIDUE NI A 302
A
NI
302
Software
5
BINDING SITE FOR RESIDUE BB2 A 401
A
BB2
401
Software
17
A
GLN
65
A
GLN
65
5
1_555
A
CYS
110
A
CYS
110
5
1_555
A
HIS
153
A
HIS
153
5
1_555
A
HIS
157
A
HIS
157
5
1_555
A
BB2
401
D
BB2
5
1_555
A
HIS
97
A
HIS
97
5
1_555
A
HOH
485
E
HOH
5
1_555
A
HOH
549
E
HOH
5
1_555
A
HOH
555
E
HOH
5
1_555
A
HOH
617
E
HOH
5
1_555
A
LYS
5
A
LYS
5
17
3_645
A
PRO
57
A
PRO
57
17
1_555
A
GLY
58
A
GLY
58
17
1_555
A
ILE
59
A
ILE
59
17
1_555
A
GLY
60
A
GLY
60
17
1_555
A
GLN
65
A
GLN
65
17
1_555
A
LEU
104
A
LEU
104
17
1_555
A
THR
106
A
THR
106
17
1_555
A
GLY
107
A
GLY
107
17
1_555
A
GLY
109
A
GLY
109
17
1_555
A
CYS
110
A
CYS
110
17
1_555
A
LEU
111
A
LEU
111
17
1_555
A
HIS
153
A
HIS
153
17
1_555
A
GLU
154
A
GLU
154
17
1_555
A
HIS
157
A
HIS
157
17
1_555
A
NI
301
B
NI
17
1_555
A
HOH
435
E
HOH
17
1_555
19
P 21 21 21