0.023802 -0.000000 0.000000 0.000000 0.023215 0.000000 0.000000 0.000000 0.010843 0.00000 0.00000 0.00000 Mathieu, M. Mikol, V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 42.013 43.075 92.225 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C19 H35 N3 O5 385.498 ACTINONIN 2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2-HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL-PROPYL]-AMIDE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Ni 2 58.693 NICKEL (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N O N 77 N N N 78 N O N 79 R C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N C N 85 N C N 86 N C N 87 N N N 88 S C N 89 N C N 90 N C N 91 N C N 92 N C N 93 N O N 94 N N N 95 S C N 96 N C N 97 N C N 98 N C N 99 N C N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 R C N 138 N C N 139 N O N 140 N C N 141 N S N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 S C N 152 N C N 153 N O N 154 N C N 155 N C N 156 N C N 157 N O N 158 N N N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N C N 177 N O N 178 N O N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 N C N 191 N C N 192 N O N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N N N 200 S C N 201 N C N 202 N O N 203 N C Y 204 N C Y 205 N N Y 206 N C Y 207 N C Y 208 N N N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N O N 221 N H N 222 N H N 223 N N N 224 S C N 225 N C N 226 N O N 227 S C N 228 N C N 229 N C N 230 N C N 231 N O N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N N N 246 S C N 247 N C N 248 N O N 249 N C N 250 N C N 251 N C N 252 N C N 253 N O N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C N 272 N C N 273 N C N 274 N C N 275 N N N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N N N 293 S C N 294 N C N 295 N O N 296 N C N 297 N C N 298 N S N 299 N C N 300 N O N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N NI N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C Y 322 N C Y 323 N C N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C N 341 N C N 342 N C N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C N 358 N O N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N N N 368 S C N 369 N C N 370 N O N 371 R C N 372 N O N 373 N C N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 N C Y 389 N C Y 390 N C Y 391 N C Y 392 N C Y 393 N C Y 394 N C N 395 N O N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N N N 409 S C N 410 N C N 411 N O N 412 N C N 413 N C N 414 N C N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing Y 202 N sing Y 203 N doub Y 204 N doub N 205 N sing Y 206 N sing N 207 N sing Y 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing Y 310 N doub Y 311 N sing Y 312 N sing N 313 N sing Y 314 N doub N 315 N sing Y 316 N doub N 317 N sing Y 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing Y 379 N doub Y 380 N sing Y 381 N sing N 382 N sing Y 383 N doub N 384 N sing Y 385 N doub N 386 N sing Y 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 320 951 962 10.1016/S0022-2836(02)00549-1 12126617 The crystal structures of four peptide deformylases bound to the antibiotic actinonin reveal two distinct types: a platform for the structure-based design of antibacterial agents. 2002 10.2210/pdb1lqy/pdb pdb_00001lqy 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 95 1 IMAGE PLATE 1998-12-10 MAC Science DIP-2000 Ni MIRROR + Ni FILTER SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS 20406.520 PEPTIDE deformylase 2 3.5.1.88 1 man polymer 58.693 NICKEL (II) ION 2 syn non-polymer 385.498 ACTINONIN 1 syn non-polymer 18.015 water 261 nat water PDF 2, POLYPEPTIDE DEFORMYLASE 2 no no MITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAVHVTDE NGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNG IMFYDRINPADPFQVPDGAIPIGR MITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAVHVTDE NGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNG IMFYDRINPADPFQVPDGAIPIGR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Geobacillus Escherichia sample 1422 Geobacillus stearothermophilus 562 Escherichia coli 1 2.1 39.80 VAPOR DIFFUSION, HANGING DROP 7.5 7% PEG6000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K 290 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-07-24 1 1 2008-04-28 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1LQW is the CRYSTAL STRUCTURE OF S.AUREUS PEPTIDE DEFORMYLASE. 1LRU is the CRYSTAL STRUCTURE OF E.coli deformylase. 1LRY IS the CRYSTAL STRUCTURE OF P.aeruginosa deformylase. RCSB Y RCSB 2002-05-14 REL NI NICKEL (II) ION BB2 ACTINONIN HOH water NI 1 2 NI NI 301 A NI 2 2 NI NI 302 A ATN 1 3 BB2 BB2 401 A WAT 1 4 HOH HOH 402 A WAT 2 4 HOH HOH 403 A WAT 3 4 HOH HOH 404 A WAT 4 4 HOH HOH 405 A WAT 5 4 HOH HOH 406 A WAT 6 4 HOH HOH 407 A WAT 7 4 HOH HOH 408 A WAT 8 4 HOH HOH 409 A WAT 9 4 HOH HOH 410 A WAT 10 4 HOH HOH 411 A WAT 11 4 HOH HOH 412 A WAT 12 4 HOH HOH 413 A WAT 13 4 HOH HOH 414 A WAT 14 4 HOH HOH 415 A WAT 15 4 HOH HOH 416 A WAT 16 4 HOH HOH 417 A WAT 17 4 HOH HOH 418 A WAT 18 4 HOH HOH 419 A WAT 19 4 HOH HOH 420 A WAT 20 4 HOH HOH 421 A WAT 21 4 HOH HOH 422 A WAT 22 4 HOH HOH 423 A WAT 23 4 HOH HOH 424 A WAT 24 4 HOH HOH 425 A WAT 25 4 HOH HOH 426 A WAT 26 4 HOH HOH 427 A WAT 27 4 HOH HOH 428 A WAT 28 4 HOH HOH 429 A WAT 29 4 HOH HOH 430 A WAT 30 4 HOH HOH 431 A WAT 31 4 HOH HOH 432 A WAT 32 4 HOH HOH 433 A WAT 33 4 HOH HOH 434 A WAT 34 4 HOH HOH 435 A WAT 35 4 HOH HOH 436 A WAT 36 4 HOH HOH 437 A WAT 37 4 HOH HOH 438 A WAT 38 4 HOH HOH 439 A WAT 39 4 HOH HOH 440 A WAT 40 4 HOH HOH 441 A WAT 41 4 HOH HOH 442 A WAT 42 4 HOH HOH 443 A WAT 43 4 HOH HOH 444 A WAT 44 4 HOH HOH 445 A WAT 45 4 HOH HOH 446 A WAT 46 4 HOH HOH 447 A WAT 47 4 HOH HOH 448 A WAT 48 4 HOH HOH 449 A WAT 49 4 HOH HOH 450 A WAT 50 4 HOH HOH 451 A WAT 51 4 HOH HOH 452 A WAT 52 4 HOH HOH 453 A WAT 53 4 HOH HOH 454 A WAT 54 4 HOH HOH 455 A WAT 55 4 HOH HOH 456 A WAT 56 4 HOH HOH 457 A WAT 57 4 HOH HOH 458 A WAT 58 4 HOH HOH 459 A WAT 59 4 HOH HOH 460 A WAT 60 4 HOH HOH 461 A WAT 61 4 HOH HOH 462 A WAT 62 4 HOH HOH 463 A WAT 63 4 HOH HOH 464 A WAT 64 4 HOH HOH 465 A WAT 65 4 HOH HOH 466 A WAT 66 4 HOH HOH 467 A WAT 67 4 HOH HOH 468 A WAT 68 4 HOH HOH 469 A WAT 69 4 HOH HOH 470 A WAT 70 4 HOH HOH 471 A WAT 71 4 HOH HOH 472 A WAT 72 4 HOH HOH 473 A WAT 73 4 HOH HOH 474 A WAT 74 4 HOH HOH 475 A WAT 75 4 HOH HOH 476 A WAT 76 4 HOH HOH 477 A WAT 77 4 HOH HOH 478 A WAT 78 4 HOH HOH 479 A WAT 79 4 HOH HOH 480 A WAT 80 4 HOH HOH 481 A WAT 81 4 HOH HOH 482 A WAT 82 4 HOH HOH 483 A WAT 83 4 HOH HOH 484 A WAT 84 4 HOH HOH 485 A WAT 85 4 HOH HOH 486 A WAT 86 4 HOH HOH 487 A WAT 87 4 HOH HOH 488 A WAT 88 4 HOH HOH 489 A WAT 89 4 HOH HOH 490 A WAT 90 4 HOH HOH 491 A WAT 91 4 HOH HOH 492 A WAT 92 4 HOH HOH 493 A WAT 93 4 HOH HOH 494 A WAT 94 4 HOH HOH 495 A WAT 95 4 HOH HOH 496 A WAT 96 4 HOH HOH 497 A WAT 97 4 HOH HOH 498 A WAT 98 4 HOH HOH 499 A WAT 99 4 HOH HOH 500 A WAT 100 4 HOH HOH 501 A WAT 101 4 HOH HOH 502 A WAT 102 4 HOH HOH 503 A WAT 103 4 HOH HOH 504 A WAT 104 4 HOH HOH 505 A WAT 105 4 HOH HOH 506 A WAT 106 4 HOH HOH 507 A WAT 107 4 HOH HOH 508 A WAT 108 4 HOH HOH 509 A WAT 109 4 HOH HOH 510 A WAT 110 4 HOH HOH 511 A WAT 111 4 HOH HOH 512 A WAT 112 4 HOH HOH 513 A WAT 113 4 HOH HOH 514 A WAT 114 4 HOH HOH 515 A WAT 115 4 HOH HOH 516 A WAT 116 4 HOH HOH 517 A WAT 117 4 HOH HOH 518 A WAT 118 4 HOH HOH 519 A WAT 119 4 HOH HOH 520 A WAT 120 4 HOH HOH 521 A WAT 121 4 HOH HOH 522 A WAT 122 4 HOH HOH 523 A WAT 123 4 HOH HOH 524 A WAT 124 4 HOH HOH 525 A WAT 125 4 HOH HOH 526 A WAT 126 4 HOH HOH 527 A WAT 127 4 HOH HOH 528 A WAT 128 4 HOH HOH 529 A WAT 129 4 HOH HOH 530 A WAT 130 4 HOH HOH 531 A WAT 131 4 HOH HOH 532 A WAT 132 4 HOH HOH 533 A WAT 133 4 HOH HOH 534 A WAT 134 4 HOH HOH 535 A WAT 135 4 HOH HOH 536 A WAT 136 4 HOH HOH 537 A WAT 137 4 HOH HOH 538 A WAT 138 4 HOH HOH 539 A WAT 139 4 HOH HOH 540 A WAT 140 4 HOH HOH 541 A WAT 141 4 HOH HOH 542 A WAT 142 4 HOH HOH 543 A WAT 143 4 HOH HOH 544 A WAT 144 4 HOH HOH 545 A WAT 145 4 HOH HOH 546 A WAT 146 4 HOH HOH 547 A WAT 147 4 HOH HOH 548 A WAT 148 4 HOH HOH 549 A WAT 149 4 HOH HOH 550 A WAT 150 4 HOH HOH 551 A WAT 151 4 HOH HOH 552 A WAT 152 4 HOH HOH 553 A WAT 153 4 HOH HOH 554 A WAT 154 4 HOH HOH 555 A WAT 155 4 HOH HOH 556 A WAT 156 4 HOH HOH 557 A WAT 157 4 HOH HOH 558 A WAT 158 4 HOH HOH 559 A WAT 159 4 HOH HOH 560 A WAT 160 4 HOH HOH 561 A WAT 161 4 HOH HOH 562 A WAT 162 4 HOH HOH 563 A WAT 163 4 HOH HOH 564 A WAT 164 4 HOH HOH 565 A WAT 165 4 HOH HOH 566 A WAT 166 4 HOH HOH 567 A WAT 167 4 HOH HOH 568 A WAT 168 4 HOH HOH 569 A WAT 169 4 HOH HOH 570 A WAT 170 4 HOH HOH 571 A WAT 171 4 HOH HOH 572 A WAT 172 4 HOH HOH 573 A WAT 173 4 HOH HOH 574 A WAT 174 4 HOH HOH 575 A WAT 175 4 HOH HOH 576 A WAT 176 4 HOH HOH 577 A WAT 177 4 HOH HOH 578 A WAT 178 4 HOH HOH 579 A WAT 179 4 HOH HOH 580 A WAT 180 4 HOH HOH 581 A WAT 181 4 HOH HOH 582 A WAT 182 4 HOH HOH 583 A WAT 183 4 HOH HOH 584 A WAT 184 4 HOH HOH 585 A WAT 185 4 HOH HOH 586 A WAT 186 4 HOH HOH 587 A WAT 187 4 HOH HOH 588 A WAT 188 4 HOH HOH 589 A WAT 189 4 HOH HOH 590 A WAT 190 4 HOH HOH 591 A WAT 191 4 HOH HOH 592 A WAT 192 4 HOH HOH 593 A WAT 193 4 HOH HOH 594 A WAT 194 4 HOH HOH 595 A WAT 195 4 HOH HOH 596 A WAT 196 4 HOH HOH 597 A WAT 197 4 HOH HOH 598 A WAT 198 4 HOH HOH 599 A WAT 199 4 HOH HOH 600 A WAT 200 4 HOH HOH 601 A WAT 201 4 HOH HOH 602 A WAT 202 4 HOH HOH 603 A WAT 203 4 HOH HOH 604 A WAT 204 4 HOH HOH 605 A WAT 205 4 HOH HOH 606 A WAT 206 4 HOH HOH 607 A WAT 207 4 HOH HOH 608 A WAT 208 4 HOH HOH 609 A WAT 209 4 HOH HOH 610 A WAT 210 4 HOH HOH 611 A WAT 211 4 HOH HOH 612 A WAT 212 4 HOH HOH 613 A WAT 213 4 HOH HOH 614 A WAT 214 4 HOH HOH 615 A WAT 215 4 HOH HOH 616 A WAT 216 4 HOH HOH 617 A WAT 217 4 HOH HOH 618 A WAT 218 4 HOH HOH 619 A WAT 219 4 HOH HOH 620 A WAT 220 4 HOH HOH 621 A WAT 221 4 HOH HOH 622 A WAT 222 4 HOH HOH 623 A WAT 223 4 HOH HOH 624 A WAT 224 4 HOH HOH 625 A WAT 225 4 HOH HOH 626 A WAT 226 4 HOH HOH 627 A WAT 227 4 HOH HOH 628 A WAT 228 4 HOH HOH 629 A WAT 229 4 HOH HOH 630 A WAT 230 4 HOH HOH 631 A WAT 231 4 HOH HOH 632 A WAT 232 4 HOH HOH 633 A WAT 233 4 HOH HOH 634 A WAT 234 4 HOH HOH 635 A WAT 235 4 HOH HOH 636 A WAT 236 4 HOH HOH 637 A WAT 237 4 HOH HOH 638 A WAT 238 4 HOH HOH 639 A WAT 239 4 HOH HOH 640 A WAT 240 4 HOH HOH 641 A WAT 241 4 HOH HOH 642 A WAT 242 4 HOH HOH 643 A WAT 243 4 HOH HOH 644 A WAT 244 4 HOH HOH 645 A WAT 245 4 HOH HOH 646 A WAT 246 4 HOH HOH 647 A WAT 247 4 HOH HOH 648 A WAT 248 4 HOH HOH 649 A WAT 249 4 HOH HOH 650 A WAT 250 4 HOH HOH 651 A WAT 251 4 HOH HOH 652 A WAT 252 4 HOH HOH 653 A WAT 253 4 HOH HOH 654 A WAT 254 4 HOH HOH 655 A WAT 255 4 HOH HOH 656 A WAT 256 4 HOH HOH 657 A WAT 257 4 HOH HOH 658 A WAT 258 4 HOH HOH 659 A WAT 259 4 HOH HOH 660 A WAT 260 4 HOH HOH 661 A WAT 261 4 HOH HOH 662 A MET 1 n 1 MET 1 A ILE 2 n 2 ILE 2 A THR 3 n 3 THR 3 A MET 4 n 4 MET 4 A LYS 5 n 5 LYS 5 A ASP 6 n 6 ASP 6 A ILE 7 n 7 ILE 7 A ILE 8 n 8 ILE 8 A LYS 9 n 9 LYS 9 A GLU 10 n 10 GLU 10 A GLY 11 n 11 GLY 11 A HIS 12 n 12 HIS 12 A PRO 13 n 13 PRO 13 A THR 14 n 14 THR 14 A LEU 15 n 15 LEU 15 A ARG 16 n 16 ARG 16 A LYS 17 n 17 LYS 17 A VAL 18 n 18 VAL 18 A ALA 19 n 19 ALA 19 A GLU 20 n 20 GLU 20 A PRO 21 n 21 PRO 21 A VAL 22 n 22 VAL 22 A PRO 23 n 23 PRO 23 A LEU 24 n 24 LEU 24 A PRO 25 n 25 PRO 25 A PRO 26 n 26 PRO 26 A SER 27 n 27 SER 27 A GLU 28 n 28 GLU 28 A GLU 29 n 29 GLU 29 A ASP 30 n 30 ASP 30 A LYS 31 n 31 LYS 31 A ARG 32 n 32 ARG 32 A ILE 33 n 33 ILE 33 A LEU 34 n 34 LEU 34 A GLN 35 n 35 GLN 35 A SER 36 n 36 SER 36 A LEU 37 n 37 LEU 37 A LEU 38 n 38 LEU 38 A ASP 39 n 39 ASP 39 A TYR 40 n 40 TYR 40 A VAL 41 n 41 VAL 41 A LYS 42 n 42 LYS 42 A MET 43 n 43 MET 43 A SER 44 n 44 SER 44 A GLN 45 n 45 GLN 45 A ASP 46 n 46 ASP 46 A PRO 47 n 47 PRO 47 A GLU 48 n 48 GLU 48 A LEU 49 n 49 LEU 49 A ALA 50 n 50 ALA 50 A ALA 51 n 51 ALA 51 A LYS 52 n 52 LYS 52 A TYR 53 n 53 TYR 53 A GLY 54 n 54 GLY 54 A LEU 55 n 55 LEU 55 A ARG 56 n 56 ARG 56 A PRO 57 n 57 PRO 57 A GLY 58 n 58 GLY 58 A ILE 59 n 59 ILE 59 A GLY 60 n 60 GLY 60 A LEU 61 n 61 LEU 61 A ALA 62 n 62 ALA 62 A ALA 63 n 63 ALA 63 A PRO 64 n 64 PRO 64 A GLN 65 n 65 GLN 65 A ILE 66 n 66 ILE 66 A ASN 67 n 67 ASN 67 A VAL 68 n 68 VAL 68 A SER 69 n 69 SER 69 A LYS 70 n 70 LYS 70 A ARG 71 n 71 ARG 71 A MET 72 n 72 MET 72 A ILE 73 n 73 ILE 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A HIS 76 n 76 HIS 76 A VAL 77 n 77 VAL 77 A THR 78 n 78 THR 78 A ASP 79 n 79 ASP 79 A GLU 80 n 80 GLU 80 A ASN 81 n 81 ASN 81 A GLY 82 n 82 GLY 82 A THR 83 n 83 THR 83 A LEU 84 n 84 LEU 84 A TYR 85 n 85 TYR 85 A SER 86 n 86 SER 86 A TYR 87 n 87 TYR 87 A ALA 88 n 88 ALA 88 A LEU 89 n 89 LEU 89 A PHE 90 n 90 PHE 90 A ASN 91 n 91 ASN 91 A PRO 92 n 92 PRO 92 A LYS 93 n 93 LYS 93 A ILE 94 n 94 ILE 94 A VAL 95 n 95 VAL 95 A SER 96 n 96 SER 96 A HIS 97 n 97 HIS 97 A SER 98 n 98 SER 98 A VAL 99 n 99 VAL 99 A GLN 100 n 100 GLN 100 A GLN 101 n 101 GLN 101 A CYS 102 n 102 CYS 102 A TYR 103 n 103 TYR 103 A LEU 104 n 104 LEU 104 A THR 105 n 105 THR 105 A THR 106 n 106 THR 106 A GLY 107 n 107 GLY 107 A GLU 108 n 108 GLU 108 A GLY 109 n 109 GLY 109 A CYS 110 n 110 CYS 110 A LEU 111 n 111 LEU 111 A SER 112 n 112 SER 112 A VAL 113 n 113 VAL 113 A ASP 114 n 114 ASP 114 A ARG 115 n 115 ARG 115 A ASP 116 n 116 ASP 116 A VAL 117 n 117 VAL 117 A PRO 118 n 118 PRO 118 A GLY 119 n 119 GLY 119 A TYR 120 n 120 TYR 120 A VAL 121 n 121 VAL 121 A LEU 122 n 122 LEU 122 A ARG 123 n 123 ARG 123 A TYR 124 n 124 TYR 124 A ALA 125 n 125 ALA 125 A ARG 126 n 126 ARG 126 A ILE 127 n 127 ILE 127 A THR 128 n 128 THR 128 A VAL 129 n 129 VAL 129 A THR 130 n 130 THR 130 A GLY 131 n 131 GLY 131 A THR 132 n 132 THR 132 A THR 133 n 133 THR 133 A LEU 134 n 134 LEU 134 A ASP 135 n 135 ASP 135 A GLY 136 n 136 GLY 136 A GLU 137 n 137 GLU 137 A GLU 138 n 138 GLU 138 A VAL 139 n 139 VAL 139 A THR 140 n 140 THR 140 A LEU 141 n 141 LEU 141 A ARG 142 n 142 ARG 142 A LEU 143 n 143 LEU 143 A LYS 144 n 144 LYS 144 A GLY 145 n 145 GLY 145 A LEU 146 n 146 LEU 146 A PRO 147 n 147 PRO 147 A ALA 148 n 148 ALA 148 A ILE 149 n 149 ILE 149 A VAL 150 n 150 VAL 150 A PHE 151 n 151 PHE 151 A GLN 152 n 152 GLN 152 A HIS 153 n 153 HIS 153 A GLU 154 n 154 GLU 154 A ILE 155 n 155 ILE 155 A ASP 156 n 156 ASP 156 A HIS 157 n 157 HIS 157 A LEU 158 n 158 LEU 158 A ASN 159 n 159 ASN 159 A GLY 160 n 160 GLY 160 A ILE 161 n 161 ILE 161 A MET 162 n 162 MET 162 A PHE 163 n 163 PHE 163 A TYR 164 n 164 TYR 164 A ASP 165 n 165 ASP 165 A ARG 166 n 166 ARG 166 A ILE 167 n 167 ILE 167 A ASN 168 n 168 ASN 168 A PRO 169 n 169 PRO 169 A ALA 170 n 170 ALA 170 A ASP 171 n 171 ASP 171 A PRO 172 n 172 PRO 172 A PHE 173 n 173 PHE 173 A GLN 174 n 174 GLN 174 A VAL 175 n 175 VAL 175 A PRO 176 n 176 PRO 176 A ASP 177 n 177 ASP 177 A GLY 178 n 178 GLY 178 A ALA 179 n 179 ALA 179 A ILE 180 n 180 ILE 180 A PRO 181 n 181 PRO 181 A ILE 182 n 182 ILE 182 A GLY 183 n 183 GLY 183 A ARG 184 n 184 ARG 184 A author_defined_assembly 1 monomeric A HIS 97 A NE2 HIS 97 1_555 A NI 302 C NI NI 1_555 A HOH 485 E O HOH 1_555 91.8 A HIS 97 A NE2 HIS 97 1_555 A NI 302 C NI NI 1_555 A HOH 549 E O HOH 1_555 98.3 A HOH 485 E O HOH 1_555 A NI 302 C NI NI 1_555 A HOH 549 E O HOH 1_555 92.0 A HIS 97 A NE2 HIS 97 1_555 A NI 302 C NI NI 1_555 A HOH 555 E O HOH 1_555 83.7 A HOH 485 E O HOH 1_555 A NI 302 C NI NI 1_555 A HOH 555 E O HOH 1_555 84.9 A HOH 549 E O HOH 1_555 A NI 302 C NI NI 1_555 A HOH 555 E O HOH 1_555 176.4 A HIS 97 A NE2 HIS 97 1_555 A NI 302 C NI NI 1_555 A HOH 617 E O HOH 1_555 95.0 A HOH 485 E O HOH 1_555 A NI 302 C NI NI 1_555 A HOH 617 E O HOH 1_555 172.5 A HOH 549 E O HOH 1_555 A NI 302 C NI NI 1_555 A HOH 617 E O HOH 1_555 90.3 A HOH 555 E O HOH 1_555 A NI 302 C NI NI 1_555 A HOH 617 E O HOH 1_555 92.6 A CYS 110 A SG CYS 110 1_555 A NI 301 B NI NI 1_555 A HIS 153 A NE2 HIS 153 1_555 108.6 A CYS 110 A SG CYS 110 1_555 A NI 301 B NI NI 1_555 A HIS 157 A NE2 HIS 157 1_555 97.3 A HIS 153 A NE2 HIS 153 1_555 A NI 301 B NI NI 1_555 A HIS 157 A NE2 HIS 157 1_555 100.1 A CYS 110 A SG CYS 110 1_555 A NI 301 B NI NI 1_555 A BB2 401 D O2 BB2 1_555 149.5 A HIS 153 A NE2 HIS 153 1_555 A NI 301 B NI NI 1_555 A BB2 401 D O2 BB2 1_555 99.9 A HIS 157 A NE2 HIS 157 1_555 A NI 301 B NI NI 1_555 A BB2 401 D O2 BB2 1_555 87.9 A CYS 110 A SG CYS 110 1_555 A NI 301 B NI NI 1_555 A BB2 401 D O4 BB2 1_555 88.8 A HIS 153 A NE2 HIS 153 1_555 A NI 301 B NI NI 1_555 A BB2 401 D O4 BB2 1_555 102.9 A HIS 157 A NE2 HIS 157 1_555 A NI 301 B NI NI 1_555 A BB2 401 D O4 BB2 1_555 153.0 A BB2 401 D O2 BB2 1_555 A NI 301 B NI NI 1_555 A BB2 401 D O4 BB2 1_555 74.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 61 A N LEU 61 A O ALA 74 A O ALA 74 A N VAL 77 A N VAL 77 A O TYR 85 A O TYR 85 A N PHE 90 A N PHE 90 A O THR 132 A O THR 132 A N VAL 129 A N VAL 129 A O LEU 141 A O LEU 141 A O ARG 123 A O ARG 123 A N CYS 102 A N CYS 102 A N TYR 103 A N TYR 103 A O ILE 182 A O ILE 182 1 A A O O HOH HOH 606 662 1.54 1 A A O O HOH HOH 584 662 2.09 1 A A SD O MET HOH 1 521 2.12 1 A A O O HOH HOH 592 639 2.12 1_555 4_456 1 A ARG 115 177.83 148.15 14.32 0.2420000 0.1610000 0.1610000 0.1610000 1.9 19.0 942 13368 13368 7 RANDOM 1 0.0 MOLECULAR REPLACEMENT Engh & Huber 1.9 19.0 261 1723 29 0 1433 0.017 1.705 1.9 20 1LQY 13516 13516 0 0 0.0309000 1 24.7 3.9 98.0 1.90 1.97 12.8 1287 0.0830000 2.9 95.3 phasing AMoRE refinement X-PLOR 98.1 data reduction DENZO data scaling SCALEPACK Crystal Structure of Bacillus stearothermophilus Peptide Deformylase Complexed with Antibiotic Actinonin 1 N N 2 N N 2 N N 3 N N 4 N N A THR 3 A THR 3 HELX_P A ILE 7 A ILE 7 5 1 5 A HIS 12 A HIS 12 HELX_P A LYS 17 A LYS 17 5 2 6 A SER 27 A SER 27 HELX_P A GLN 45 A GLN 45 1 3 19 A ASP 46 A ASP 46 HELX_P A GLY 54 A GLY 54 1 4 9 A PRO 64 A PRO 64 HELX_P A ASN 67 A ASN 67 5 5 4 A GLY 145 A GLY 145 HELX_P A ASN 159 A ASN 159 1 6 15 A MET 162 A MET 162 HELX_P A ILE 167 A ILE 167 5 7 6 metalc 2.109 A HIS 97 A NE2 HIS 97 1_555 A NI 302 C NI NI 1_555 metalc 2.693 A CYS 110 A SG CYS 110 1_555 A NI 301 B NI NI 1_555 metalc 2.133 A HIS 153 A NE2 HIS 153 1_555 A NI 301 B NI NI 1_555 metalc 2.166 A HIS 157 A NE2 HIS 157 1_555 A NI 301 B NI NI 1_555 metalc 2.151 A NI 301 B NI NI 1_555 A BB2 401 D O2 BB2 1_555 metalc 2.239 A NI 301 B NI NI 1_555 A BB2 401 D O4 BB2 1_555 metalc 2.267 A NI 302 C NI NI 1_555 A HOH 485 E O HOH 1_555 metalc 2.336 A NI 302 C NI NI 1_555 A HOH 549 E O HOH 1_555 metalc 2.463 A NI 302 C NI NI 1_555 A HOH 555 E O HOH 1_555 metalc 2.397 A NI 302 C NI NI 1_555 A HOH 617 E O HOH 1_555 HYDROLASE ACTINONIN, INHIBITION, POLYPEPTIDE DEFORMYLASE, HYDROLASE A LEU 24 A LEU 24 1 A PRO 25 A PRO 25 -0.19 DEF2_BACST UNP 1 1 O31410 MITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAVHVTDE NGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNG IMFYDRINPADPFQVPDGAIPIGR 1 184 1LQY 1 184 O31410 A 1 1 184 5 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A GLY 60 A GLY 60 A ALA 62 A ALA 62 A MET 72 A MET 72 A THR 78 A THR 78 A LEU 84 A LEU 84 A HIS 97 A HIS 97 A ARG 126 A ARG 126 A THR 132 A THR 132 A GLU 138 A GLU 138 A LYS 144 A LYS 144 A ARG 123 A ARG 123 A TYR 124 A TYR 124 A GLN 101 A GLN 101 A LEU 104 A LEU 104 A ILE 180 A ILE 180 A ILE 182 A ILE 182 BINDING SITE FOR RESIDUE NI A 301 A NI 301 Software 5 BINDING SITE FOR RESIDUE NI A 302 A NI 302 Software 5 BINDING SITE FOR RESIDUE BB2 A 401 A BB2 401 Software 17 A GLN 65 A GLN 65 5 1_555 A CYS 110 A CYS 110 5 1_555 A HIS 153 A HIS 153 5 1_555 A HIS 157 A HIS 157 5 1_555 A BB2 401 D BB2 5 1_555 A HIS 97 A HIS 97 5 1_555 A HOH 485 E HOH 5 1_555 A HOH 549 E HOH 5 1_555 A HOH 555 E HOH 5 1_555 A HOH 617 E HOH 5 1_555 A LYS 5 A LYS 5 17 3_645 A PRO 57 A PRO 57 17 1_555 A GLY 58 A GLY 58 17 1_555 A ILE 59 A ILE 59 17 1_555 A GLY 60 A GLY 60 17 1_555 A GLN 65 A GLN 65 17 1_555 A LEU 104 A LEU 104 17 1_555 A THR 106 A THR 106 17 1_555 A GLY 107 A GLY 107 17 1_555 A GLY 109 A GLY 109 17 1_555 A CYS 110 A CYS 110 17 1_555 A LEU 111 A LEU 111 17 1_555 A HIS 153 A HIS 153 17 1_555 A GLU 154 A GLU 154 17 1_555 A HIS 157 A HIS 157 17 1_555 A NI 301 B NI 17 1_555 A HOH 435 E HOH 17 1_555 19 P 21 21 21