0.030826 0.000000 0.005297 0.000000 0.020145 0.000000 0.000000 0.000000 0.038891 0.00000 0.00000 0.00000 CIS PROLINE - PRO 39 CIS PROLINE - PRO 55 Pletinckx, J. Steyaert, J. Choe, H.-W. Heinemann, U. Wyns, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 99.75 90.00 32.440 49.640 26.090 C10 H14 N5 O8 P 363.221 GUANOSINE-2'-MONOPHOSPHATE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 33 1654 1662 10.1021/bi00173a006 7906540 Crystallographic study of Glu58Ala RNase T1 x 2'-guanosine monophosphate at 1.9-A resolution. 1994 UK J.Mol.Biol. JMOBAK 0070 0022-2836 206 475 Three-Dimensional Structure of Ribonuclease T1 Complexed with Guanylyl-2',5'-Guanosine at 1.8 Angstroms Resolution 1989 US J.Biol.Chem. JBCHA3 0071 0021-9258 263 15358 Three-Dimensional Structure of the Ribonuclease T1(Asterisk)2'-Gmp Complex at 1.9-Angstroms Resolution 1988 DK Acta Crystallogr.,Sect.B ASBSDK 0622 0108-7681 43 549 Restrained Least-Squares Refinement of the Crystal Structure of the Ribonuclease T1(Asterisk)2'-Guanylic Acid Complex at 1.9 Angstroms Resolution 1987 NE Trends Biochem.Sci.(Pers. Ed.) TBSCDB 946 0376-5067 8 364 The Structural and Sequence Homology of a Family of Microbial Ribonucleases 1983 US J.Biomol.Struct.Dyn. JBSDD6 0646 0739-1102 1 523 Crystallographic Study of Mechanism of Ribonuclease T1-Catalysed Specific RNA Hydrolysis 1983 UK Nature NATUAS 0006 0028-0836 299 27 Specific Protein-Nucleic Acid Recognition in Ribonuclease T1-2'-Guanylic Acid Complex. An X-Ray Study 1982 IX Eur.J.Biochem. EJBCAI 0262 0014-2956 109 109 Crystallization of a Complex between Ribonuclease T1 and 2'-Guanylic Acid 1980 UK J.Mol.Biol. JMOBAK 0070 0022-2836 222 335 Ribonuclease T1 with Free Recognition and Catalytic Site: Crystal Structure Analysis at 1.5 Angstroms 1991 US Biochemistry BICHAW 0033 0006-2960 29 9064 Histidine-40 of Ribonuclease T1Acts as Base Catalyst When the True Catalytic Base, Glutamic Acid 58 is Replaced by Alanine 1990 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 11036.658 RIBONUCLEASE T1 3.1.27.3 1 man polymer 22.990 SODIUM ION 1 syn non-polymer 363.221 GUANOSINE-2'-MONOPHOSPHATE 1 syn non-polymer 18.015 water 90 nat water no no ACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYAWPILSSGDVYSGGSPGADRVVF NENNQLAGVITHTGASGNNFVECT ACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYAWPILSSGDVYSGGSPGADRVVF NENNQLAGVITHTGASGNNFVECT A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Aspergillus sample 5062 Aspergillus oryzae 1.88 34.41 pdbx_database_status struct_conf struct_conf_type repository Initial release Version format compliance Atomic model Version format compliance Derived calculations Other 1 0 1994-01-31 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 _pdbx_database_status.process_site Y BNL 1993-10-01 REL NA SODIUM ION 2GP GUANOSINE-2'-MONOPHOSPHATE HOH water NA 106 2 NA NA 106 A 2GP 105 3 2GP 2GP 105 A HOH 107 4 HOH HOH 107 A HOH 108 4 HOH HOH 108 A HOH 109 4 HOH HOH 109 A HOH 110 4 HOH HOH 110 A HOH 111 4 HOH HOH 111 A HOH 112 4 HOH HOH 112 A HOH 113 4 HOH HOH 113 A HOH 114 4 HOH HOH 114 A HOH 115 4 HOH HOH 115 A HOH 116 4 HOH HOH 116 A HOH 117 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 119 4 HOH HOH 119 A HOH 120 4 HOH HOH 120 A HOH 121 4 HOH HOH 121 A HOH 122 4 HOH HOH 122 A HOH 123 4 HOH HOH 123 A HOH 124 4 HOH HOH 124 A HOH 125 4 HOH HOH 125 A HOH 126 4 HOH HOH 126 A HOH 127 4 HOH HOH 127 A HOH 128 4 HOH HOH 128 A HOH 129 4 HOH HOH 129 A HOH 130 4 HOH HOH 130 A HOH 131 4 HOH HOH 131 A HOH 132 4 HOH HOH 132 A HOH 133 4 HOH HOH 133 A HOH 134 4 HOH HOH 134 A HOH 135 4 HOH HOH 135 A HOH 136 4 HOH HOH 136 A HOH 137 4 HOH HOH 137 A HOH 138 4 HOH HOH 138 A HOH 139 4 HOH HOH 139 A HOH 140 4 HOH HOH 140 A HOH 141 4 HOH HOH 141 A HOH 142 4 HOH HOH 142 A HOH 143 4 HOH HOH 143 A HOH 144 4 HOH HOH 144 A HOH 145 4 HOH HOH 145 A HOH 146 4 HOH HOH 146 A HOH 147 4 HOH HOH 147 A HOH 148 4 HOH HOH 148 A HOH 149 4 HOH HOH 149 A HOH 150 4 HOH HOH 150 A HOH 151 4 HOH HOH 151 A HOH 152 4 HOH HOH 152 A HOH 153 4 HOH HOH 153 A HOH 154 4 HOH HOH 154 A HOH 155 4 HOH HOH 155 A HOH 156 4 HOH HOH 156 A HOH 157 4 HOH HOH 157 A HOH 158 4 HOH HOH 158 A HOH 159 4 HOH HOH 159 A HOH 160 4 HOH HOH 160 A HOH 161 4 HOH HOH 161 A HOH 162 4 HOH HOH 162 A HOH 163 4 HOH HOH 163 A HOH 164 4 HOH HOH 164 A HOH 165 4 HOH HOH 165 A HOH 166 4 HOH HOH 166 A HOH 167 4 HOH HOH 167 A HOH 168 4 HOH HOH 168 A HOH 169 4 HOH HOH 169 A HOH 170 4 HOH HOH 170 A HOH 171 4 HOH HOH 171 A HOH 172 4 HOH HOH 172 A HOH 173 4 HOH HOH 173 A HOH 174 4 HOH HOH 174 A HOH 175 4 HOH HOH 175 A HOH 176 4 HOH HOH 176 A HOH 177 4 HOH HOH 177 A HOH 178 4 HOH HOH 178 A HOH 179 4 HOH HOH 179 A HOH 180 4 HOH HOH 180 A HOH 181 4 HOH HOH 181 A HOH 182 4 HOH HOH 182 A HOH 183 4 HOH HOH 183 A HOH 184 4 HOH HOH 184 A HOH 185 4 HOH HOH 185 A HOH 186 4 HOH HOH 186 A HOH 187 4 HOH HOH 187 A HOH 188 4 HOH HOH 188 A HOH 189 4 HOH HOH 189 A HOH 190 4 HOH HOH 190 A HOH 191 4 HOH HOH 191 A HOH 192 4 HOH HOH 192 A HOH 193 4 HOH HOH 193 A HOH 194 4 HOH HOH 194 A HOH 195 4 HOH HOH 195 A HOH 196 4 HOH HOH 196 A ALA 1 n 1 ALA 1 A CYS 2 n 2 CYS 2 A ASP 3 n 3 ASP 3 A TYR 4 n 4 TYR 4 A THR 5 n 5 THR 5 A CYS 6 n 6 CYS 6 A GLY 7 n 7 GLY 7 A SER 8 n 8 SER 8 A ASN 9 n 9 ASN 9 A CYS 10 n 10 CYS 10 A TYR 11 n 11 TYR 11 A SER 12 n 12 SER 12 A SER 13 n 13 SER 13 A SER 14 n 14 SER 14 A ASP 15 n 15 ASP 15 A VAL 16 n 16 VAL 16 A SER 17 n 17 SER 17 A THR 18 n 18 THR 18 A ALA 19 n 19 ALA 19 A GLN 20 n 20 GLN 20 A ALA 21 n 21 ALA 21 A ALA 22 n 22 ALA 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A LYS 25 n 25 LYS 25 A LEU 26 n 26 LEU 26 A HIS 27 n 27 HIS 27 A GLU 28 n 28 GLU 28 A ASP 29 n 29 ASP 29 A GLY 30 n 30 GLY 30 A GLU 31 n 31 GLU 31 A THR 32 n 32 THR 32 A VAL 33 n 33 VAL 33 A GLY 34 n 34 GLY 34 A SER 35 n 35 SER 35 A ASN 36 n 36 ASN 36 A SER 37 n 37 SER 37 A TYR 38 n 38 TYR 38 A PRO 39 n 39 PRO 39 A HIS 40 n 40 HIS 40 A LYS 41 n 41 LYS 41 A TYR 42 n 42 TYR 42 A ASN 43 n 43 ASN 43 A ASN 44 n 44 ASN 44 A TYR 45 n 45 TYR 45 A GLU 46 n 46 GLU 46 A GLY 47 n 47 GLY 47 A PHE 48 n 48 PHE 48 A ASP 49 n 49 ASP 49 A PHE 50 n 50 PHE 50 A SER 51 n 51 SER 51 A VAL 52 n 52 VAL 52 A SER 53 n 53 SER 53 A SER 54 n 54 SER 54 A PRO 55 n 55 PRO 55 A TYR 56 n 56 TYR 56 A TYR 57 n 57 TYR 57 A ALA 58 n 58 ALA 58 A TRP 59 n 59 TRP 59 A PRO 60 n 60 PRO 60 A ILE 61 n 61 ILE 61 A LEU 62 n 62 LEU 62 A SER 63 n 63 SER 63 A SER 64 n 64 SER 64 A GLY 65 n 65 GLY 65 A ASP 66 n 66 ASP 66 A VAL 67 n 67 VAL 67 A TYR 68 n 68 TYR 68 A SER 69 n 69 SER 69 A GLY 70 n 70 GLY 70 A GLY 71 n 71 GLY 71 A SER 72 n 72 SER 72 A PRO 73 n 73 PRO 73 A GLY 74 n 74 GLY 74 A ALA 75 n 75 ALA 75 A ASP 76 n 76 ASP 76 A ARG 77 n 77 ARG 77 A VAL 78 n 78 VAL 78 A VAL 79 n 79 VAL 79 A PHE 80 n 80 PHE 80 A ASN 81 n 81 ASN 81 A GLU 82 n 82 GLU 82 A ASN 83 n 83 ASN 83 A ASN 84 n 84 ASN 84 A GLN 85 n 85 GLN 85 A LEU 86 n 86 LEU 86 A ALA 87 n 87 ALA 87 A GLY 88 n 88 GLY 88 A VAL 89 n 89 VAL 89 A ILE 90 n 90 ILE 90 A THR 91 n 91 THR 91 A HIS 92 n 92 HIS 92 A THR 93 n 93 THR 93 A GLY 94 n 94 GLY 94 A ALA 95 n 95 ALA 95 A SER 96 n 96 SER 96 A GLY 97 n 97 GLY 97 A ASN 98 n 98 ASN 98 A ASN 99 n 99 ASN 99 A PHE 100 n 100 PHE 100 A VAL 101 n 101 VAL 101 A GLU 102 n 102 GLU 102 A CYS 103 n 103 CYS 103 A THR 104 n 104 THR 104 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 4 A N TYR 4 A O TYR 11 A O TYR 11 A N HIS 40 A N HIS 40 A O ALA 58 A O ALA 58 A N TRP 59 A N TRP 59 A O VAL 78 A O VAL 78 A N ARG 77 A N ARG 77 A O ILE 90 A O ILE 90 A O THR 91 A O THR 91 A N VAL 101 A N VAL 101 1 A CE1 TYR 45 A CE1 TYR 45 1 Y 1 A CE2 TYR 45 A CE2 TYR 45 1 Y 1 A CZ TYR 45 A CZ TYR 45 1 Y 1 A OH TYR 45 A OH TYR 45 1 Y 1 7.66 0.90 118.30 125.96 A A A CB CG OD2 ASP ASP ASP 3 3 3 N 1 -4.42 0.60 121.00 116.58 A A A CB CG CD1 TYR TYR TYR 4 4 4 N 1 -10.34 1.60 122.70 112.36 A A A O C N SER SER ASN 8 8 9 Y 1 16.28 1.90 123.30 139.58 A A A OD1 CG OD2 ASP ASP ASP 15 15 15 N 1 -12.37 0.90 118.30 105.93 A A A CB CG OD2 ASP ASP ASP 15 15 15 N 1 -18.37 2.70 111.20 92.83 A A A CA CB OG SER SER SER 17 17 17 N 1 -4.68 0.60 121.00 116.32 A A A CB CG CD1 TYR TYR TYR 24 24 24 N 1 13.22 2.20 113.40 126.62 A A A CA CB CG LYS LYS LYS 25 25 25 N 1 8.99 0.90 118.30 127.29 A A A CB CG OD1 ASP ASP ASP 29 29 29 N 1 -8.73 0.90 118.30 109.57 A A A CB CG OD2 ASP ASP ASP 29 29 29 N 1 12.21 1.40 112.40 124.61 A A A CA CB CG2 THR THR THR 32 32 32 N 1 -11.61 1.60 110.90 99.29 A A A CG1 CB CG2 VAL VAL VAL 33 33 33 N 1 11.95 1.50 110.90 122.85 A A A CA CB CG1 VAL VAL VAL 33 33 33 N 1 19.67 2.30 121.90 141.57 A A A OD1 CG ND2 ASN ASN ASN 36 36 36 N 1 -4.54 0.60 121.00 116.46 A A A CB CG CD1 TYR TYR TYR 38 38 38 N 1 5.74 0.80 121.30 127.04 A A A CG CD1 CE1 TYR TYR TYR 38 38 38 N 1 -6.16 0.80 121.30 115.14 A A A CG CD2 CE2 TYR TYR TYR 38 38 38 N 1 -8.31 0.90 119.80 111.49 A A A CD1 CE1 CZ TYR TYR TYR 38 38 38 N 1 11.96 1.80 110.60 122.56 A A A N CA CB HIS HIS HIS 40 40 40 N 1 13.99 2.20 113.40 127.39 A A A CA CB CG LYS LYS LYS 41 41 41 N 1 9.90 1.60 122.70 132.60 A A A O C N PHE PHE ASP 48 48 49 Y 1 15.13 1.90 111.40 126.53 A A A CB CA C VAL VAL VAL 52 52 52 N 1 4.25 0.60 121.00 125.25 A A A CB CG CD2 TYR TYR TYR 56 56 56 N 1 -9.74 1.60 110.90 101.16 A A A CG1 CB CG2 VAL VAL VAL 67 67 67 N 1 16.36 0.90 118.30 134.66 A A A CB CG OD1 ASP ASP ASP 76 76 76 N 1 -17.95 0.90 118.30 100.35 A A A CB CG OD2 ASP ASP ASP 76 76 76 N 1 10.11 0.50 120.30 130.41 A A A NE CZ NH1 ARG ARG ARG 77 77 77 N 1 -10.10 0.50 120.30 110.20 A A A NE CZ NH2 ARG ARG ARG 77 77 77 N 1 13.86 1.20 123.30 137.16 A A A OE1 CD OE2 GLU GLU GLU 82 82 82 N 1 11.22 1.60 122.70 133.92 A A A O C N ILE ILE THR 90 90 91 Y 1 22.31 2.10 120.10 142.41 A A A CA C O THR THR THR 91 91 91 N 1 -13.45 2.20 117.20 103.75 A A A CA C N THR THR HIS 91 91 92 Y 1 11.76 1.60 110.90 122.66 A A A CG1 CB CG2 VAL VAL VAL 101 101 101 N 1 A A N CA GLY GLY 88 88 0.092 0.015 1.456 1.548 N 1 A SER 37 49.12 82.52 0.178 1.9 10.0 5659 77.0 1 1.0 1.9 10.0 90 888 25 0 773 0.021 0.020 0.059 0.050 0.061 0.050 4.989 5.694 6.374 7.977 0.010 0.015 0.213 0.150 0.137 0.150 0.130 0.150 0.152 0.150 1.7 3.0 16.1 12.0 21.2 20.0 refinement PROFFT RIBONUCLEASE T1 (RNASE T1) (E.C.3.1.27.3) MUTANT WITH GLU 58 REPLACED BY ALA (E58A) COMPLEX WITH 2'-GUANYLIC ACID (2'-GMP) CRYSTALLOGRAPHIC STUDY OF GLU 58 ALA RNASE T1(ASTERISK)2'-GUANOSINE MONOPHOSPHATE AT 1.9 ANGSTROMS RESOLUTION 1 N N 2 N N 3 N N 4 N N A SER 13 A SER 13 HELX_P A ASP 29 A ASP 29 1 A 17 disulf 2.084 A CYS 2 A SG CYS 2 1_555 A CYS 10 A SG CYS 10 1_555 disulf 1.974 A CYS 6 A SG CYS 6 1_555 A CYS 103 A SG CYS 103 1_555 metalc 2.872 A NA 106 B NA NA 1_555 A HOH 107 D O HOH 1_555 HYDROLASE(ENDORIBONUCLEASE) HYDROLASE(ENDORIBONUCLEASE) A TYR 38 A TYR 38 1 A PRO 39 A PRO 39 0.23 A SER 54 A SER 54 1 A PRO 55 A PRO 55 0.06 RNT1_ASPOR UNP 1 1 P00651 MMYSKLLTLTTLLLPTALALPSLVERACDYTCGSNCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKYNNYEGFDFSVSS PYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT 27 130 1LRA 1 104 P00651 A 1 1 104 1 GLN CONFLICT LYS 25 1LRA A P00651 UNP 51 25 1 GLU CONFLICT ALA 58 1LRA A P00651 UNP 84 58 2 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 4 A TYR 4 A CYS 6 A CYS 6 A ASN 9 A ASN 9 A TYR 11 A TYR 11 A HIS 40 A HIS 40 A TYR 42 A TYR 42 A TYR 56 A TYR 56 A PRO 60 A PRO 60 A ASP 76 A ASP 76 A ASN 81 A ASN 81 A LEU 86 A LEU 86 A THR 91 A THR 91 A VAL 101 A VAL 101 A GLU 102 A GLU 102 BINDING SITE FOR RESIDUE NA A 106 Software 4 BINDING SITE FOR RESIDUE 2GP A 105 Software 18 A LEU 62 A LEU 62 4 1_555 A SER 63 A SER 63 4 1_555 A HOH 107 D HOH 4 1_555 A HOH 127 D HOH 4 1_555 A SER 13 A SER 13 18 1_556 A TYR 38 A TYR 38 18 1_555 A HIS 40 A HIS 40 18 1_555 A LYS 41 A LYS 41 18 1_555 A TYR 42 A TYR 42 18 1_555 A ASN 43 A ASN 43 18 1_555 A ASN 44 A ASN 44 18 1_555 A TYR 45 A TYR 45 18 1_555 A GLU 46 A GLU 46 18 1_555 A ARG 77 A ARG 77 18 1_555 A LEU 86 A LEU 86 18 1_556 A HIS 92 A HIS 92 18 1_555 A ASN 98 A ASN 98 18 1_555 A ASN 99 A ASN 99 18 1_555 A PHE 100 A PHE 100 18 1_555 A HOH 125 D HOH 18 1_555 A HOH 133 D HOH 18 1_555 A HOH 138 D HOH 18 1_555 4 P 1 21 1