0.009390
0.000000
0.000000
0.000000
0.009390
0.000000
0.000000
0.000000
0.020376
0.000000
0.000000
0.000000
Guarne, A.
Zhao, Q.
Guirlando, R.
Yang, W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
106.493
106.493
49.078
C11 H16 N5 O6 P
345.248
n
N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
N
22
N
N
N
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
N
N
41
S
C
N
42
N
C
N
43
N
O
N
44
N
C
N
45
N
O
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
N
N
54
S
C
N
55
N
C
N
56
N
O
N
57
N
C
N
58
N
C
N
59
N
C
N
60
N
N
N
61
N
C
N
62
N
N
N
63
N
N
N
64
N
O
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
N
N
81
S
C
N
82
N
C
N
83
N
O
N
84
N
C
N
85
N
C
N
86
N
O
N
87
N
N
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
N
N
98
S
C
N
99
N
C
N
100
N
O
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
O
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
R
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
S
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
O
N
128
N
P
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
C
N
133
R
C
N
134
N
O
N
135
S
C
N
136
N
O
N
137
N
C
N
138
R
C
Y
139
N
N
Y
140
N
C
Y
141
N
N
Y
142
N
C
Y
143
N
C
N
144
N
N
Y
145
N
N
Y
146
N
C
Y
147
N
N
Y
148
N
C
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
O
N
164
N
P
N
165
N
O
N
166
N
O
N
167
N
O
N
168
N
C
N
169
R
C
N
170
N
O
N
171
S
C
N
172
N
O
N
173
N
C
N
174
R
C
N
175
N
N
N
176
N
C
N
177
N
O
N
178
N
N
N
179
N
C
N
180
N
N
N
181
N
C
N
182
N
C
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
O
N
198
N
P
N
199
N
O
N
200
N
O
N
201
N
O
N
202
N
C
N
203
R
C
N
204
N
O
N
205
S
C
N
206
N
O
N
207
N
C
N
208
R
C
Y
209
N
N
Y
210
N
C
Y
211
N
N
Y
212
N
C
N
213
N
C
N
214
N
O
N
215
N
N
N
216
N
C
N
217
N
N
N
218
N
N
Y
219
N
C
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
O
N
235
N
P
N
236
N
O
N
237
N
O
N
238
N
O
N
239
N
C
N
240
R
C
N
241
N
O
N
242
S
C
N
243
N
O
N
244
N
C
N
245
R
C
N
246
N
N
N
247
N
C
N
248
N
O
N
249
N
N
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
N
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
Y
324
N
C
Y
325
N
N
Y
326
N
C
Y
327
N
C
Y
328
N
N
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
S
C
N
348
N
C
N
349
N
C
N
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
N
370
N
C
N
371
N
C
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
N
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
C
N
418
N
S
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
N
460
N
C
N
461
N
C
N
462
N
O
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
N
N
473
S
C
N
474
N
C
N
475
N
O
N
476
N
C
N
477
N
O
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
N
N
487
S
C
N
488
N
C
N
489
N
O
N
490
R
C
N
491
N
O
N
492
N
C
N
493
N
O
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
N
N
504
S
C
N
505
N
C
N
506
N
O
N
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
N
Y
512
N
C
Y
513
N
C
Y
514
N
C
Y
515
N
C
Y
516
N
C
N
517
N
O
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
N
N
531
S
C
N
532
N
C
N
533
N
O
N
534
N
C
Y
535
N
C
Y
536
N
C
Y
537
N
C
Y
538
N
C
Y
539
N
C
Y
540
N
C
N
541
N
O
N
542
N
O
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
N
N
555
S
C
N
556
N
C
N
557
N
O
N
558
N
C
N
559
N
C
N
560
N
C
N
561
N
O
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
Y
31
N
doub
N
32
N
sing
Y
33
N
sing
Y
34
N
doub
N
35
N
sing
Y
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
doub
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
Y
147
N
sing
Y
148
N
sing
Y
149
N
doub
N
150
N
sing
Y
151
N
sing
Y
152
N
sing
Y
153
N
doub
N
154
N
sing
Y
155
N
doub
N
156
N
sing
N
157
N
sing
Y
158
N
sing
Y
159
N
doub
N
160
N
sing
Y
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
Y
220
N
sing
Y
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
doub
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
sing
Y
331
N
doub
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
Y
438
N
doub
Y
439
N
sing
Y
440
N
sing
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
doub
N
445
N
sing
Y
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
doub
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
doub
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
Y
507
N
doub
Y
508
N
sing
Y
509
N
sing
N
510
N
sing
Y
511
N
doub
Y
512
N
sing
Y
513
N
sing
N
514
N
sing
Y
515
N
sing
Y
516
N
doub
N
517
N
sing
Y
518
N
doub
N
519
N
sing
Y
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
doub
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
Y
535
N
doub
Y
536
N
sing
Y
537
N
sing
N
538
N
sing
Y
539
N
doub
N
540
N
sing
Y
541
N
doub
N
542
N
sing
Y
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
doub
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
US
NAT.STRUCT.BIOL.
NSBIEW
2024
1072-8368
9
839
843
12379844
Insights into negative modulation of E. coli replication initiation from the structure of SeqA-hemimethylated DNA complex
2002
10.2210/pdb1lrr/pdb
pdb_00001lrr
100
1
mirrors
IMAGE PLATE
2002-04-01
RIGAKU RAXIS IV
Ni Filter
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
3607.369
5'-D(*CP*AP*CP*CP*GP*AP*TP*CP*GP*AP*CP*T)-3'
2
syn
polymer
3732.453
5'-D(*AP*GP*TP*CP*GP*(6MA)P*TP*CP*GP*GP*TP*G)-3'
2
syn
polymer
14761.073
SeqA protein
Residues 51-181
2
man
polymer
18.015
water
37
nat
water
no
no
(DC)(DA)(DC)(DC)(DG)(DA)(DT)(DC)(DG)(DA)(DC)(DT)
CACCGATCGACT
B,E
polydeoxyribonucleotide
no
yes
(DA)(DG)(DT)(DC)(DG)(6MA)(DT)(DC)(DG)(DG)(DT)(DG)
AGTCGATCGGTG
C,F
polydeoxyribonucleotide
no
no
VASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLK
NGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
VASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLK
NGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
A,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
seqA
562
Escherichia coli
562
Escherichia coli
BL834(DE3)
plasmid
pET11A
1
3.07
59.6
VAPOR DIFFUSION, HANGING DROP
8.5
PEG 4000, lithium sulphate, TRIS-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
-2.603
1
19
B
1
C
12
-4.091
B_DC1:DG12_C
1
2.534
-0.122
0.355
-0.524
5.393
1
20
B
2
C
11
-7.378
B_DA2:DT11_C
2
-7.025
0.665
0.102
-0.231
0.954
1
19
B
3
C
10
-1.003
B_DC3:DG10_C
3
-8.787
0.058
0.217
-0.256
-11.006
1
19
B
4
C
9
-5.882
B_DC4:DG9_C
4
-3.920
0.108
0.375
-0.132
-7.460
1
19
B
5
C
8
-5.150
B_DG5:DC8_C
5
-3.278
-0.344
-0.014
-0.433
3.379
1
20
B
6
C
7
-11.239
B_DA6:DT7_C
6
-5.585
0.827
-0.040
-0.251
-5.090
1
20
B
7
C
6
-9.699
B_DT7:6MA6_C
7
-21.216
-0.462
0.436
-0.023
-4.999
1
19
B
8
C
5
1.650
B_DC8:DG5_C
8
-1.220
0.977
0.071
-0.118
-2.197
1
19
B
9
C
4
-3.190
B_DG9:DC4_C
9
-8.683
0.355
0.076
-0.333
0.728
1
20
B
10
C
3
-4.699
B_DA10:DT3_C
10
-9.508
0.142
-0.285
-0.335
6.325
1
19
B
11
C
2
8.552
B_DC11:DG2_C
11
-2.621
-0.025
-0.537
0.154
2.793
1
20
B
12
C
1
-1.562
B_DT12:DA1_C
12
0.221
0.759
-0.193
-0.354
-4.877
1
19
E
1
F
12
-1.826
E_DC1:DG12_F
13
-1.887
-0.389
0.253
-0.344
-2.089
1
20
E
2
F
11
-8.368
E_DA2:DT11_F
14
-1.465
0.098
0.483
-0.060
-1.687
1
19
E
3
F
10
-0.345
E_DC3:DG10_F
15
-2.095
0.080
0.510
-0.121
-7.731
1
19
E
4
F
9
-0.048
E_DC4:DG9_F
16
-0.355
0.278
0.675
-0.115
-6.022
1
19
E
5
F
8
8.345
E_DG5:DC8_F
17
-3.519
-0.706
0.062
-0.070
0.611
1
20
E
6
F
7
-2.525
E_DA6:DT7_F
18
1.237
0.144
0.126
0.068
-5.501
1
20
E
7
F
6
-2.453
E_DT7:6MA6_F
19
-18.396
-0.285
0.253
-0.149
-1.625
1
19
E
8
F
5
3.744
E_DC8:DG5_F
20
-1.101
0.140
0.333
0.016
-8.615
1
19
E
9
F
4
0.953
E_DG9:DC4_F
21
-6.114
-0.418
-0.232
0.056
-0.743
1
20
E
10
F
3
-1.311
E_DA10:DT3_F
22
-1.827
0.425
-0.100
-0.084
2.962
1
19
E
11
F
2
2.430
E_DC11:DG2_F
23
-1.900
-0.263
-0.225
-0.248
-3.817
1
20
E
12
F
1
-1.189
E_DT12:DA1_F
24
-4.220
-1.672
-0.123
-0.216
3.226
38.655
B
B
1
2
1.122
C
C
12
11
3.238
0.741
-0.058
0.807
BB_DC1DA2:DT11DG12_CC
1
4.414
-6.682
38.405
1.128
0.627
3.391
28.681
B
B
2
3
2.525
C
C
11
10
3.448
1.249
0.195
-0.780
BB_DA2DC3:DG10DT11_CC
2
-1.917
3.874
28.591
-1.870
-0.845
3.475
37.300
B
B
3
4
5.527
C
C
10
9
3.571
3.530
-0.277
-0.941
BB_DC3DC4:DG9DG10_CC
3
-0.829
1.298
37.129
-1.975
0.315
3.266
39.624
B
B
4
5
-1.755
C
C
9
8
3.284
-1.189
-0.081
0.172
BB_DC4DG5:DC8DG9_CC
4
2.569
-3.792
39.527
0.392
0.420
3.194
31.524
B
B
5
6
7.275
C
C
8
7
3.136
3.942
-0.469
0.567
BB_DG5DA6:DT7DC8_CC
5
-0.873
1.612
31.271
0.331
0.705
3.474
35.849
B
B
6
7
-16.960
C
C
7
6
3.652
-10.288
-0.680
0.281
BB_DA6DT7:6MA6DT7_CC
6
-3.169
5.224
34.245
2.104
0.597
3.388
46.120
B
B
7
8
-5.744
C
C
6
5
3.377
-4.487
1.996
1.482
BB_DT7DC8:DG56MA6_CC
7
4.262
-5.455
45.725
2.291
-2.169
3.524
30.546
B
B
8
9
6.761
C
C
5
4
3.328
3.540
-1.299
0.532
BB_DC8DG9:DC4DG5_CC
8
-4.708
8.990
29.986
0.266
1.478
3.261
39.422
B
B
9
10
-1.482
C
C
4
3
3.279
-0.999
-0.474
-0.168
BB_DG9DA10:DT3DC4_CC
9
1.660
-2.462
39.377
-0.131
0.899
3.295
30.651
B
B
10
11
-1.517
C
C
3
2
3.214
-0.801
0.999
-0.291
BB_DA10DC11:DG2DT3_CC
10
2.729
-5.171
30.522
-0.392
-1.354
3.373
34.063
B
B
11
12
6.017
C
C
2
1
3.448
3.518
-0.067
-0.577
BB_DC11DT12:DA1DG2_CC
11
-1.238
2.118
33.864
-1.571
-0.091
3.490
45.043
E
E
1
2
-0.991
F
F
12
11
3.479
-0.758
-0.648
1.387
EE_DC1DA2:DT11DG12_FF
12
-2.951
3.854
44.945
1.884
0.563
3.309
32.491
E
E
2
3
2.113
F
F
11
10
3.344
1.181
-0.003
-0.787
EE_DA2DC3:DG10DT11_FF
13
-1.817
3.249
32.421
-1.617
-0.318
3.319
34.393
E
E
3
4
5.784
F
F
10
9
3.393
3.415
0.556
-0.695
EE_DC3DC4:DG9DG10_FF
14
0.605
-1.024
34.223
-1.723
-0.844
3.206
36.219
E
E
4
5
3.144
F
F
9
8
3.179
1.950
0.192
0.529
EE_DC4DG5:DC8DG9_FF
15
3.692
-5.951
35.986
0.582
0.199
3.304
30.318
E
E
5
6
12.075
F
F
8
7
3.281
6.268
-0.605
0.296
EE_DG5DA6:DT7DC8_FF
16
-1.843
3.550
29.622
-0.720
0.779
3.207
44.265
E
E
6
7
-22.930
F
F
7
6
3.561
-16.877
-0.815
0.375
EE_DA6DT7:6MA6DT7_FF
17
-1.743
2.368
41.036
2.196
0.907
3.282
40.959
E
E
7
8
-5.747
F
F
6
5
3.291
-4.013
1.872
1.073
EE_DT7DC8:DG56MA6_FF
18
2.569
-3.679
40.693
1.975
-2.392
3.524
32.838
E
E
8
9
11.380
F
F
5
4
3.388
6.385
-1.282
0.484
EE_DC8DG9:DC4DG5_FF
19
-3.207
5.716
32.072
-0.314
1.680
3.220
39.340
E
E
9
10
0.370
F
F
4
3
3.187
0.249
-0.642
0.150
EE_DG9DA10:DT3DC4_FF
20
-2.432
3.614
39.267
0.193
0.670
3.112
24.858
E
E
10
11
8.256
F
F
3
2
3.213
3.541
0.765
-0.712
EE_DA10DC11:DG2DT3_FF
21
1.135
-2.646
24.582
-2.689
-1.446
3.387
33.014
E
E
11
12
7.797
F
F
2
1
3.428
4.414
0.738
-0.433
EE_DC11DT12:DA1DG2_FF
22
2.511
-4.436
32.632
-1.547
-0.852
chem_comp_atom
chem_comp_bond
database_2
struct_conn
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-12-11
1
1
2008-04-28
1
2
2011-07-13
1
3
2013-05-29
1
4
2024-02-14
1
5
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
RCSB
Y
RCSB
2002-05-15
REL
REL
HOH
water
synthetic oligonuclotide
sample
synthetic oligonuclotide
sample
seqA-C
Other
experimental model
HOH
8
4
HOH
HOH
13
B
HOH
16
4
HOH
HOH
14
B
HOH
50
4
HOH
HOH
15
B
HOH
15
4
HOH
HOH
15
C
HOH
36
4
HOH
HOH
36
C
HOH
39
4
HOH
HOH
39
C
HOH
40
4
HOH
HOH
40
C
HOH
29
4
HOH
HOH
29
E
HOH
51
4
HOH
HOH
51
E
HOH
1
4
HOH
HOH
1
A
HOH
2
4
HOH
HOH
2
A
HOH
3
4
HOH
HOH
3
A
HOH
4
4
HOH
HOH
4
A
HOH
5
4
HOH
HOH
5
A
HOH
7
4
HOH
HOH
7
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
21
4
HOH
HOH
21
D
HOH
22
4
HOH
HOH
22
D
HOH
23
4
HOH
HOH
23
D
HOH
24
4
HOH
HOH
24
D
HOH
25
4
HOH
HOH
25
D
HOH
26
4
HOH
HOH
26
D
HOH
30
4
HOH
HOH
30
D
HOH
31
4
HOH
HOH
31
D
HOH
32
4
HOH
HOH
32
D
HOH
33
4
HOH
HOH
33
D
HOH
34
4
HOH
HOH
34
D
HOH
35
4
HOH
HOH
35
D
C
1
n
1
DC
1
B
A
2
n
2
DA
2
B
C
3
n
3
DC
3
B
C
4
n
4
DC
4
B
G
5
n
5
DG
5
B
A
6
n
6
DA
6
B
T
7
n
7
DT
7
B
C
8
n
8
DC
8
B
G
9
n
9
DG
9
B
A
10
n
10
DA
10
B
C
11
n
11
DC
11
B
T
12
n
12
DT
12
B
A
1
n
1
DA
1
C
G
2
n
2
DG
2
C
T
3
n
3
DT
3
C
C
4
n
4
DC
4
C
G
5
n
5
DG
5
C
+A
6
n
6
6MA
6
C
T
7
n
7
DT
7
C
C
8
n
8
DC
8
C
G
9
n
9
DG
9
C
G
10
n
10
DG
10
C
T
11
n
11
DT
11
C
G
12
n
12
DG
12
C
C
1
n
1
DC
1
E
A
2
n
2
DA
2
E
C
3
n
3
DC
3
E
C
4
n
4
DC
4
E
G
5
n
5
DG
5
E
A
6
n
6
DA
6
E
T
7
n
7
DT
7
E
C
8
n
8
DC
8
E
G
9
n
9
DG
9
E
A
10
n
10
DA
10
E
C
11
n
11
DC
11
E
T
12
n
12
DT
12
E
A
1
n
1
DA
1
F
G
2
n
2
DG
2
F
T
3
n
3
DT
3
F
C
4
n
4
DC
4
F
G
5
n
5
DG
5
F
+A
6
n
6
6MA
6
F
T
7
n
7
DT
7
F
C
8
n
8
DC
8
F
G
9
n
9
DG
9
F
G
10
n
10
DG
10
F
T
11
n
11
DT
11
F
G
12
n
12
DG
12
F
n
1
51
A
n
2
52
A
n
3
53
A
n
4
54
A
n
5
55
A
n
6
56
A
n
7
57
A
n
8
58
A
n
9
59
A
n
10
60
A
n
11
61
A
n
12
62
A
n
13
63
A
THR
64
n
14
THR
64
A
ILE
65
n
15
ILE
65
A
LYS
66
n
16
LYS
66
A
ASP
67
n
17
ASP
67
A
LYS
68
n
18
LYS
68
A
VAL
69
n
19
VAL
69
A
ARG
70
n
20
ARG
70
A
ALA
71
n
21
ALA
71
A
MET
72
n
22
MET
72
A
ARG
73
n
23
ARG
73
A
GLU
74
n
24
GLU
74
A
LEU
75
n
25
LEU
75
A
LEU
76
n
26
LEU
76
A
LEU
77
n
27
LEU
77
A
SER
78
n
28
SER
78
A
ASP
79
n
29
ASP
79
A
GLU
80
n
30
GLU
80
A
TYR
81
n
31
TYR
81
A
ALA
82
n
32
ALA
82
A
GLU
83
n
33
GLU
83
A
GLN
84
n
34
GLN
84
A
LYS
85
n
35
LYS
85
A
ARG
86
n
36
ARG
86
A
ALA
87
n
37
ALA
87
A
VAL
88
n
38
VAL
88
A
ASN
89
n
39
ASN
89
A
ARG
90
n
40
ARG
90
A
PHE
91
n
41
PHE
91
A
MET
92
n
42
MET
92
A
LEU
93
n
43
LEU
93
A
LEU
94
n
44
LEU
94
A
LEU
95
n
45
LEU
95
A
SER
96
n
46
SER
96
A
THR
97
n
47
THR
97
A
LEU
98
n
48
LEU
98
A
TYR
99
n
49
TYR
99
A
SER
100
n
50
SER
100
A
LEU
101
n
51
LEU
101
A
ASP
102
n
52
ASP
102
A
ALA
103
n
53
ALA
103
A
GLN
104
n
54
GLN
104
A
ALA
105
n
55
ALA
105
A
PHE
106
n
56
PHE
106
A
ALA
107
n
57
ALA
107
A
GLU
108
n
58
GLU
108
A
ALA
109
n
59
ALA
109
A
THR
110
n
60
THR
110
A
GLU
111
n
61
GLU
111
A
SER
112
n
62
SER
112
A
LEU
113
n
63
LEU
113
A
HIS
114
n
64
HIS
114
A
GLY
115
n
65
GLY
115
A
ARG
116
n
66
ARG
116
A
THR
117
n
67
THR
117
A
ARG
118
n
68
ARG
118
A
VAL
119
n
69
VAL
119
A
TYR
120
n
70
TYR
120
A
PHE
121
n
71
PHE
121
A
ALA
122
n
72
ALA
122
A
ALA
123
n
73
ALA
123
A
ASP
124
n
74
ASP
124
A
GLU
125
n
75
GLU
125
A
GLN
126
n
76
GLN
126
A
THR
127
n
77
THR
127
A
LEU
128
n
78
LEU
128
A
LEU
129
n
79
LEU
129
A
LYS
130
n
80
LYS
130
A
ASN
131
n
81
ASN
131
A
GLY
132
n
82
GLY
132
A
ASN
133
n
83
ASN
133
A
GLN
134
n
84
GLN
134
A
THR
135
n
85
THR
135
A
LYS
136
n
86
LYS
136
A
PRO
137
n
87
PRO
137
A
LYS
138
n
88
LYS
138
A
HIS
139
n
89
HIS
139
A
VAL
140
n
90
VAL
140
A
PRO
141
n
91
PRO
141
A
GLY
142
n
92
GLY
142
A
THR
143
n
93
THR
143
A
PRO
144
n
94
PRO
144
A
TYR
145
n
95
TYR
145
A
TRP
146
n
96
TRP
146
A
VAL
147
n
97
VAL
147
A
ILE
148
n
98
ILE
148
A
THR
149
n
99
THR
149
A
ASN
150
n
100
ASN
150
A
THR
151
n
101
THR
151
A
ASN
152
n
102
ASN
152
A
THR
153
n
103
THR
153
A
GLY
154
n
104
GLY
154
A
ARG
155
n
105
ARG
155
A
LYS
156
n
106
LYS
156
A
CYS
157
n
107
CYS
157
A
SER
158
n
108
SER
158
A
MET
159
n
109
MET
159
A
ILE
160
n
110
ILE
160
A
GLU
161
n
111
GLU
161
A
HIS
162
n
112
HIS
162
A
ILE
163
n
113
ILE
163
A
MET
164
n
114
MET
164
A
GLN
165
n
115
GLN
165
A
SER
166
n
116
SER
166
A
MET
167
n
117
MET
167
A
GLN
168
n
118
GLN
168
A
PHE
169
n
119
PHE
169
A
PRO
170
n
120
PRO
170
A
ALA
171
n
121
ALA
171
A
GLU
172
n
122
GLU
172
A
LEU
173
n
123
LEU
173
A
ILE
174
n
124
ILE
174
A
GLU
175
n
125
GLU
175
A
LYS
176
n
126
LYS
176
A
VAL
177
n
127
VAL
177
A
CYS
178
n
128
CYS
178
A
GLY
179
n
129
GLY
179
A
THR
180
n
130
THR
180
A
ILE
181
n
131
ILE
181
A
n
1
51
D
n
2
52
D
n
3
53
D
n
4
54
D
n
5
55
D
n
6
56
D
n
7
57
D
n
8
58
D
n
9
59
D
n
10
60
D
n
11
61
D
n
12
62
D
n
13
63
D
THR
64
n
14
THR
64
D
ILE
65
n
15
ILE
65
D
LYS
66
n
16
LYS
66
D
ASP
67
n
17
ASP
67
D
LYS
68
n
18
LYS
68
D
VAL
69
n
19
VAL
69
D
ARG
70
n
20
ARG
70
D
ALA
71
n
21
ALA
71
D
MET
72
n
22
MET
72
D
ARG
73
n
23
ARG
73
D
GLU
74
n
24
GLU
74
D
LEU
75
n
25
LEU
75
D
LEU
76
n
26
LEU
76
D
LEU
77
n
27
LEU
77
D
SER
78
n
28
SER
78
D
ASP
79
n
29
ASP
79
D
GLU
80
n
30
GLU
80
D
TYR
81
n
31
TYR
81
D
ALA
82
n
32
ALA
82
D
GLU
83
n
33
GLU
83
D
GLN
84
n
34
GLN
84
D
LYS
85
n
35
LYS
85
D
ARG
86
n
36
ARG
86
D
ALA
87
n
37
ALA
87
D
VAL
88
n
38
VAL
88
D
ASN
89
n
39
ASN
89
D
ARG
90
n
40
ARG
90
D
PHE
91
n
41
PHE
91
D
MET
92
n
42
MET
92
D
LEU
93
n
43
LEU
93
D
LEU
94
n
44
LEU
94
D
LEU
95
n
45
LEU
95
D
SER
96
n
46
SER
96
D
THR
97
n
47
THR
97
D
LEU
98
n
48
LEU
98
D
TYR
99
n
49
TYR
99
D
SER
100
n
50
SER
100
D
LEU
101
n
51
LEU
101
D
ASP
102
n
52
ASP
102
D
ALA
103
n
53
ALA
103
D
GLN
104
n
54
GLN
104
D
ALA
105
n
55
ALA
105
D
PHE
106
n
56
PHE
106
D
ALA
107
n
57
ALA
107
D
GLU
108
n
58
GLU
108
D
ALA
109
n
59
ALA
109
D
THR
110
n
60
THR
110
D
GLU
111
n
61
GLU
111
D
SER
112
n
62
SER
112
D
LEU
113
n
63
LEU
113
D
HIS
114
n
64
HIS
114
D
GLY
115
n
65
GLY
115
D
ARG
116
n
66
ARG
116
D
THR
117
n
67
THR
117
D
ARG
118
n
68
ARG
118
D
VAL
119
n
69
VAL
119
D
TYR
120
n
70
TYR
120
D
PHE
121
n
71
PHE
121
D
ALA
122
n
72
ALA
122
D
ALA
123
n
73
ALA
123
D
ASP
124
n
74
ASP
124
D
GLU
125
n
75
GLU
125
D
GLN
126
n
76
GLN
126
D
THR
127
n
77
THR
127
D
LEU
128
n
78
LEU
128
D
LEU
129
n
79
LEU
129
D
LYS
130
n
80
LYS
130
D
ASN
131
n
81
ASN
131
D
GLY
132
n
82
GLY
132
D
ASN
133
n
83
ASN
133
D
GLN
134
n
84
GLN
134
D
THR
135
n
85
THR
135
D
LYS
136
n
86
LYS
136
D
PRO
137
n
87
PRO
137
D
LYS
138
n
88
LYS
138
D
HIS
139
n
89
HIS
139
D
VAL
140
n
90
VAL
140
D
PRO
141
n
91
PRO
141
D
GLY
142
n
92
GLY
142
D
THR
143
n
93
THR
143
D
PRO
144
n
94
PRO
144
D
TYR
145
n
95
TYR
145
D
TRP
146
n
96
TRP
146
D
VAL
147
n
97
VAL
147
D
ILE
148
n
98
ILE
148
D
THR
149
n
99
THR
149
D
ASN
150
n
100
ASN
150
D
THR
151
n
101
THR
151
D
ASN
152
n
102
ASN
152
D
THR
153
n
103
THR
153
D
GLY
154
n
104
GLY
154
D
ARG
155
n
105
ARG
155
D
LYS
156
n
106
LYS
156
D
CYS
157
n
107
CYS
157
D
SER
158
n
108
SER
158
D
MET
159
n
109
MET
159
D
ILE
160
n
110
ILE
160
D
GLU
161
n
111
GLU
161
D
HIS
162
n
112
HIS
162
D
ILE
163
n
113
ILE
163
D
MET
164
n
114
MET
164
D
GLN
165
n
115
GLN
165
D
SER
166
n
116
SER
166
D
MET
167
n
117
MET
167
D
GLN
168
n
118
GLN
168
D
PHE
169
n
119
PHE
169
D
PRO
170
n
120
PRO
170
D
ALA
171
n
121
ALA
171
D
GLU
172
n
122
GLU
172
D
LEU
173
n
123
LEU
173
D
ILE
174
n
124
ILE
174
D
GLU
175
n
125
GLU
175
D
LYS
176
n
126
LYS
176
D
VAL
177
n
127
VAL
177
D
CYS
178
n
128
CYS
178
D
GLY
179
n
129
GLY
179
D
THR
180
n
130
THR
180
D
ILE
181
n
131
ILE
181
D
author_defined_assembly
3
trimeric
author_defined_assembly
3
trimeric
C
6MA
6
B
6MA
6
A
F
6MA
6
D
6MA
6
A
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
122
E
N
ALA
72
A
O
TRP
146
E
O
TRP
96
A
O
VAL
147
E
O
VAL
97
A
N
LYS
138
E
N
LYS
88
D
N
ALA
122
F
N
ALA
72
D
O
TRP
146
F
O
TRP
96
D
O
VAL
147
F
O
VAL
97
D
N
LYS
138
F
N
LYS
88
1
A
VAL
51
E
VAL
1
1
Y
1
A
ALA
52
E
ALA
2
1
Y
1
A
SER
53
E
SER
3
1
Y
1
A
PRO
54
E
PRO
4
1
Y
1
A
ALA
55
E
ALA
5
1
Y
1
A
ILE
56
E
ILE
6
1
Y
1
A
VAL
57
E
VAL
7
1
Y
1
A
GLU
58
E
GLU
8
1
Y
1
A
ALA
59
E
ALA
9
1
Y
1
A
LYS
60
E
LYS
10
1
Y
1
A
PRO
61
E
PRO
11
1
Y
1
A
VAL
62
E
VAL
12
1
Y
1
A
LYS
63
E
LYS
13
1
Y
1
D
VAL
51
F
VAL
1
1
Y
1
D
ALA
52
F
ALA
2
1
Y
1
D
SER
53
F
SER
3
1
Y
1
D
PRO
54
F
PRO
4
1
Y
1
D
ALA
55
F
ALA
5
1
Y
1
D
ILE
56
F
ILE
6
1
Y
1
D
VAL
57
F
VAL
7
1
Y
1
D
GLU
58
F
GLU
8
1
Y
1
D
ALA
59
F
ALA
9
1
Y
1
D
LYS
60
F
LYS
10
1
Y
1
D
PRO
61
F
PRO
11
1
Y
1
D
VAL
62
F
VAL
12
1
Y
1
D
LYS
63
F
LYS
13
1
Y
1
C
C
OP1
O
DT
HOH
3
40
2.12
1
A
ASP
102
-165.81
95.56
1
A
ASN
133
-60.96
-90.50
1
D
ASP
102
-170.47
81.87
1
D
GLN
134
-89.19
33.08
protein_rep.param
protein.top
dna-rna_rep.param
dna-rna.top
water_rep.param
water.top
62.11
-0.74
0.00
0.00
-0.74
0.00
1.47
0.278
0.008
0.248
2.65
23.91
1110
16285
16158
6.9
99.2
1.00
1.00
random
1
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
seqA-C
Engh & Huber
CNS bulk solvent model used
39.1035
0.300876
0.44
0.41
3.00
0.58
0.38
2.65
23.91
37
2895
0
974
1884
0.008
1.3
19.7
1.27
0.521
0.043
0.498
2.77
144
1857
8
7.2
98.9
0.455
0.040
0.41
2.92
127
1868
8
6.4
99.5
0.337
0.027
0.356
3.10
151
1866
8
7.5
99.5
0.333
0.030
0.27
3.34
127
1878
8
6.3
99.4
0.281
0.024
0.251
3.67
134
1887
8
6.6
99.8
0.259
0.021
0.227
4.20
152
1868
8
7.5
99.9
0.222
0.018
0.204
5.28
152
1898
8
7.4
99.6
0.248
0.022
0.211
23.91
123
1926
8
6.0
97.3
71.9
2.65
25
1LRR
16344
16187
0
0
0.087
1
14.6
3.2
99.2
0.355
2.65
2.70
2.3
815
1
2.9
98.5
refinement
Axel T. Brunger
axel.brunger@yale.edu
1998
Fortran
CNS
package
1.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
CRYSTAL STRUCTURE OF E. COLI SEQA COMPLEXED WITH HEMIMETHYLATED DNA
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
THR
64
E
THR
14
HELX_P
A
SER
78
E
SER
28
1
1
15
A
SER
78
E
SER
28
HELX_P
A
GLN
84
E
GLN
34
1
2
7
A
ARG
86
E
ARG
36
HELX_P
A
ASP
102
E
ASP
52
1
3
17
A
ASP
102
E
ASP
52
HELX_P
A
SER
112
E
SER
62
1
4
11
A
ASP
124
E
ASP
74
HELX_P
A
GLY
132
E
GLY
82
1
5
9
A
ASN
152
E
ASN
102
HELX_P
A
MET
167
E
MET
117
1
6
16
A
PRO
170
E
PRO
120
HELX_P
A
GLY
179
E
GLY
129
1
7
10
D
THR
64
F
THR
14
HELX_P
D
SER
78
F
SER
28
1
8
15
D
SER
78
F
SER
28
HELX_P
D
GLU
83
F
GLU
33
1
9
6
D
ARG
86
F
ARG
36
HELX_P
D
ASP
102
F
ASP
52
1
10
17
D
ASP
102
F
ASP
52
HELX_P
D
SER
112
F
SER
62
1
11
11
D
ASP
124
F
ASP
74
HELX_P
D
ASN
131
F
ASN
81
1
12
8
D
ASN
152
F
ASN
102
HELX_P
D
MET
167
F
MET
117
1
13
16
D
PRO
170
F
PRO
120
HELX_P
D
GLY
179
F
GLY
129
1
14
10
covale
1.584
both
C
DG
5
B
O3'
DG
5
1_555
C
6MA
6
B
P
6MA
6
1_555
covale
1.611
both
C
6MA
6
B
O3'
6MA
6
1_555
C
DT
7
B
P
DT
7
1_555
covale
1.591
both
F
DG
5
D
O3'
DG
5
1_555
F
6MA
6
D
P
6MA
6
1_555
covale
1.606
both
F
6MA
6
D
O3'
6MA
6
1_555
F
DT
7
D
P
DT
7
1_555
hydrog
WATSON-CRICK
B
DC
1
A
N3
DC
1
1_555
C
DG
12
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
1
A
N4
DC
1
1_555
C
DG
12
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
1
A
O2
DC
1
1_555
C
DG
12
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
B
DA
2
A
N1
DA
2
1_555
C
DT
11
B
N3
DT
11
1_555
hydrog
WATSON-CRICK
B
DA
2
A
N6
DA
2
1_555
C
DT
11
B
O4
DT
11
1_555
hydrog
WATSON-CRICK
B
DC
3
A
N3
DC
3
1_555
C
DG
10
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
3
A
N4
DC
3
1_555
C
DG
10
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
3
A
O2
DC
3
1_555
C
DG
10
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
4
A
N3
DC
4
1_555
C
DG
9
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
4
A
N4
DC
4
1_555
C
DG
9
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
4
A
O2
DC
4
1_555
C
DG
9
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
B
DG
5
A
N1
DG
5
1_555
C
DC
8
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
5
A
N2
DG
5
1_555
C
DC
8
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
5
A
O6
DG
5
1_555
C
DC
8
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
B
DA
6
A
N1
DA
6
1_555
C
DT
7
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
B
DA
6
A
N6
DA
6
1_555
C
DT
7
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
B
DT
7
A
N3
DT
7
1_555
C
6MA
6
B
N1
6MA
6
1_555
hydrog
WATSON-CRICK
B
DT
7
A
O4
DT
7
1_555
C
6MA
6
B
N6
6MA
6
1_555
hydrog
WATSON-CRICK
B
DC
8
A
N3
DC
8
1_555
C
DG
5
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
8
A
N4
DC
8
1_555
C
DG
5
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
8
A
O2
DC
8
1_555
C
DG
5
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
DG
9
A
N1
DG
9
1_555
C
DC
4
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
9
A
N2
DG
9
1_555
C
DC
4
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
9
A
O6
DG
9
1_555
C
DC
4
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
B
DA
10
A
N1
DA
10
1_555
C
DT
3
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
B
DA
10
A
N6
DA
10
1_555
C
DT
3
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
B
DC
11
A
N3
DC
11
1_555
C
DG
2
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
11
A
N4
DC
11
1_555
C
DG
2
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
11
A
O2
DC
11
1_555
C
DG
2
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
B
DT
12
A
N3
DT
12
1_555
C
DA
1
B
N1
DA
1
1_555
hydrog
WATSON-CRICK
B
DT
12
A
O4
DT
12
1_555
C
DA
1
B
N6
DA
1
1_555
hydrog
WATSON-CRICK
E
DC
1
C
N3
DC
1
1_555
F
DG
12
D
N1
DG
12
1_555
hydrog
WATSON-CRICK
E
DC
1
C
N4
DC
1
1_555
F
DG
12
D
O6
DG
12
1_555
hydrog
WATSON-CRICK
E
DC
1
C
O2
DC
1
1_555
F
DG
12
D
N2
DG
12
1_555
hydrog
WATSON-CRICK
E
DA
2
C
N1
DA
2
1_555
F
DT
11
D
N3
DT
11
1_555
hydrog
WATSON-CRICK
E
DA
2
C
N6
DA
2
1_555
F
DT
11
D
O4
DT
11
1_555
hydrog
WATSON-CRICK
E
DC
3
C
N3
DC
3
1_555
F
DG
10
D
N1
DG
10
1_555
hydrog
WATSON-CRICK
E
DC
3
C
N4
DC
3
1_555
F
DG
10
D
O6
DG
10
1_555
hydrog
WATSON-CRICK
E
DC
3
C
O2
DC
3
1_555
F
DG
10
D
N2
DG
10
1_555
hydrog
WATSON-CRICK
E
DC
4
C
N3
DC
4
1_555
F
DG
9
D
N1
DG
9
1_555
hydrog
WATSON-CRICK
E
DC
4
C
N4
DC
4
1_555
F
DG
9
D
O6
DG
9
1_555
hydrog
WATSON-CRICK
E
DC
4
C
O2
DC
4
1_555
F
DG
9
D
N2
DG
9
1_555
hydrog
WATSON-CRICK
E
DG
5
C
N1
DG
5
1_555
F
DC
8
D
N3
DC
8
1_555
hydrog
WATSON-CRICK
E
DG
5
C
N2
DG
5
1_555
F
DC
8
D
O2
DC
8
1_555
hydrog
WATSON-CRICK
E
DG
5
C
O6
DG
5
1_555
F
DC
8
D
N4
DC
8
1_555
hydrog
WATSON-CRICK
E
DA
6
C
N1
DA
6
1_555
F
DT
7
D
N3
DT
7
1_555
hydrog
WATSON-CRICK
E
DA
6
C
N6
DA
6
1_555
F
DT
7
D
O4
DT
7
1_555
hydrog
WATSON-CRICK
E
DT
7
C
N3
DT
7
1_555
F
6MA
6
D
N1
6MA
6
1_555
hydrog
WATSON-CRICK
E
DT
7
C
O4
DT
7
1_555
F
6MA
6
D
N6
6MA
6
1_555
hydrog
WATSON-CRICK
E
DC
8
C
N3
DC
8
1_555
F
DG
5
D
N1
DG
5
1_555
hydrog
WATSON-CRICK
E
DC
8
C
N4
DC
8
1_555
F
DG
5
D
O6
DG
5
1_555
hydrog
WATSON-CRICK
E
DC
8
C
O2
DC
8
1_555
F
DG
5
D
N2
DG
5
1_555
hydrog
WATSON-CRICK
E
DG
9
C
N1
DG
9
1_555
F
DC
4
D
N3
DC
4
1_555
hydrog
WATSON-CRICK
E
DG
9
C
N2
DG
9
1_555
F
DC
4
D
O2
DC
4
1_555
hydrog
WATSON-CRICK
E
DG
9
C
O6
DG
9
1_555
F
DC
4
D
N4
DC
4
1_555
hydrog
WATSON-CRICK
E
DA
10
C
N1
DA
10
1_555
F
DT
3
D
N3
DT
3
1_555
hydrog
WATSON-CRICK
E
DA
10
C
N6
DA
10
1_555
F
DT
3
D
O4
DT
3
1_555
hydrog
WATSON-CRICK
E
DC
11
C
N3
DC
11
1_555
F
DG
2
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
11
C
N4
DC
11
1_555
F
DG
2
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
11
C
O2
DC
11
1_555
F
DG
2
D
N2
DG
2
1_555
hydrog
WATSON-CRICK
E
DT
12
C
N3
DT
12
1_555
F
DA
1
D
N1
DA
1
1_555
hydrog
WATSON-CRICK
E
DT
12
C
O4
DT
12
1_555
F
DA
1
D
N6
DA
1
1_555
REPLICATION INHIBITOR/DNA
protein-dna complex, replication, methylated GATC, REPLICATION INHIBITOR-DNA COMPLEX
SEQA_ECOLI
UNP
3
1
P36658
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDE
YAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI
EHIMQSMQFPAELIEKVCGTI
1LRR
PDB
1
1LRR
1LRR
PDB
2
1LRR
51
181
1LRR
51
181
P36658
A
1
1
131
51
181
1LRR
51
181
P36658
D
1
1
131
1
12
1LRR
1
12
1LRR
B
2
1
12
1
12
1LRR
1
12
1LRR
C
3
1
12
1
12
1LRR
1
12
1LRR
E
2
1
12
1
12
1LRR
1
12
1LRR
F
3
1
12
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
121
E
PHE
71
A
ALA
122
E
ALA
72
A
TRP
146
E
TRP
96
A
VAL
147
E
VAL
97
A
LYS
138
E
LYS
88
A
HIS
139
E
HIS
89
D
PHE
121
F
PHE
71
D
ALA
122
F
ALA
72
D
TRP
146
F
TRP
96
D
VAL
147
F
VAL
97
D
LYS
138
F
LYS
88
D
HIS
139
F
HIS
89
77
P 42