0.009811
0.005664
0.000000
0.000000
0.011328
0.000000
0.000000
0.000000
0.008104
0.00000
0.00000
0.00000
Asojo, O.A.
Gulnik, S.V.
Afonina, E.
Yu, B.
Ellman, J.A.
Haque, T.S.
Silva, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
101.930
101.930
123.389
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C5 H10 O2
102.132
ISOVALERIC ACID
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C8 H17 N O3
175.225
STATINE
peptide-like
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
327
173
181
10.1016/S0022-2836(03)00036-6
12614616
Novel uncomplexed and complexed structures of plasmepsin II, an aspartic protease from Plasmodium falciparum.
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
90.0
1
IMAGE PLATE
2000-03-01
MAR scanner 300 mm plate
DOUBLE FOCUSING MIRROR SYSTEM
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
1.5418
ROTATING ANODE
RIGAKU RU200
36985.457
plasmepsin IV
2
man
polymer
685.891
Pepstatin
2
syn
polymer
18.015
water
28
nat
water
no
no
SENDSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKHLYDASASKSYEKDGTKVEISYGSG
TVRGYFSKDVISLGDLSLPYKFIEVTDADDLEPIYSGSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPV
HDKHVGYLTIGGIESDFYEGPLTYEKLNHDLYWQIDLDIHFGKYVMQKANAVVDSGTSTITAPTSFLNKFFRDMNVIKVP
FLPLYVTTCDNDDLPTLEFHSRNNKYTLEPEFYMDPLSDIDPALCMLYILPVDIDDNTFILGDPFMRKYFTVFDYEKESV
GFAVAKNL
SENDSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKHLYDASASKSYEKDGTKVEISYGSG
TVRGYFSKDVISLGDLSLPYKFIEVTDADDLEPIYSGSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPV
HDKHVGYLTIGGIESDFYEGPLTYEKLNHDLYWQIDLDIHFGKYVMQKANAVVDSGTSTITAPTSFLNKFFRDMNVIKVP
FLPLYVTTCDNDDLPTLEFHSRNNKYTLEPEFYMDPLSDIDPALCMLYILPVDIDDNTFILGDPFMRKYFTVFDYEKESV
GFAVAKNL
A,B
polypeptide(L)
no
yes
(IVA)VV(STA)A(STA)
XVVXAX
C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
malaria parasite P. falciparum
Plasmodium
Escherichia
sample
5833
Plasmodium falciparum
562
Escherichia coli
1
2.50
50.81
5.50
pH 5.50
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Other
1
0
2002-06-12
1
1
2008-04-28
1
2
2011-07-13
1
3
2013-02-27
2002-06-12
SPRSDE
Plasmepsin II, A Hemoglobin-Degrading Enzyme From Plasmodium Falciparum, In Complex With Pepstatin A
RCSB
Y
RCSB
2002-05-16
REL
HOH
water
285516
Streptomyces argenteolus subsp. toyonakensis
sample
Enzyme inhibitor
Pepstatin
Oligopeptide
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
350
3
HOH
HOH
350
B
HOH
351
3
HOH
HOH
351
B
HOH
352
3
HOH
HOH
352
B
HOH
353
3
HOH
HOH
353
B
HOH
354
3
HOH
HOH
354
B
HOH
355
3
HOH
HOH
355
B
HOH
356
3
HOH
HOH
356
B
HOH
357
3
HOH
HOH
357
B
HOH
358
3
HOH
HOH
358
B
HOH
359
3
HOH
HOH
359
B
SER
1
n
1
SER
1
A
GLU
2
n
2
GLU
2
A
ASN
3
n
3
ASN
3
A
ASP
4
n
4
ASP
4
A
SER
5
n
5
SER
5
A
ILE
6
n
6
ILE
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ASP
9
n
9
ASP
9
A
ASP
10
n
10
ASP
10
A
VAL
11
n
11
VAL
11
A
ALA
12
n
12
ALA
12
A
ASN
13
n
13
ASN
13
A
LEU
14
n
14
LEU
14
A
MET
15
n
15
MET
15
A
PHE
16
n
16
PHE
16
A
TYR
17
n
17
TYR
17
A
GLY
18
n
18
GLY
18
A
GLU
19
n
19
GLU
19
A
GLY
20
n
20
GLY
20
A
GLN
21
n
21
GLN
21
A
ILE
22
n
22
ILE
22
A
GLY
23
n
23
GLY
23
A
THR
24
n
24
THR
24
A
ASN
25
n
25
ASN
25
A
LYS
26
n
26
LYS
26
A
GLN
27
n
27
GLN
27
A
PRO
28
n
28
PRO
28
A
PHE
29
n
29
PHE
29
A
MET
30
n
30
MET
30
A
PHE
31
n
31
PHE
31
A
ILE
32
n
32
ILE
32
A
PHE
33
n
33
PHE
33
A
ASP
34
n
34
ASP
34
A
THR
35
n
35
THR
35
A
GLY
36
n
36
GLY
36
A
SER
37
n
37
SER
37
A
ALA
38
n
38
ALA
38
A
ASN
39
n
39
ASN
39
A
LEU
40
n
40
LEU
40
A
TRP
41
n
41
TRP
41
A
VAL
42
n
42
VAL
42
A
PRO
43
n
43
PRO
43
A
SER
44
n
44
SER
44
A
VAL
45
n
45
VAL
45
A
ASN
46
n
46
ASN
46
A
CYS
47
n
47
CYS
47
A
ASP
48
n
48
ASP
48
A
SER
49
n
49
SER
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
CYS
52
n
52
CYS
52
A
SER
53
n
53
SER
53
A
THR
54
n
54
THR
54
A
LYS
55
n
55
LYS
55
A
HIS
56
n
56
HIS
56
A
LEU
57
n
57
LEU
57
A
TYR
58
n
58
TYR
58
A
ASP
59
n
59
ASP
59
A
ALA
60
n
60
ALA
60
A
SER
61
n
61
SER
61
A
ALA
62
n
62
ALA
62
A
SER
63
n
63
SER
63
A
LYS
64
n
64
LYS
64
A
SER
65
n
65
SER
65
A
TYR
66
n
66
TYR
66
A
GLU
67
n
67
GLU
67
A
LYS
68
n
68
LYS
68
A
ASP
69
n
69
ASP
69
A
GLY
70
n
70
GLY
70
A
THR
71
n
71
THR
71
A
LYS
72
n
72
LYS
72
A
VAL
73
n
73
VAL
73
A
GLU
74
n
74
GLU
74
A
ILE
75
n
75
ILE
75
A
SER
76
n
76
SER
76
A
TYR
77
n
77
TYR
77
A
GLY
78
n
78
GLY
78
A
SER
79
n
79
SER
79
A
GLY
80
n
80
GLY
80
A
THR
81
n
81
THR
81
A
VAL
82
n
82
VAL
82
A
ARG
83
n
83
ARG
83
A
GLY
84
n
84
GLY
84
A
TYR
85
n
85
TYR
85
A
PHE
86
n
86
PHE
86
A
SER
87
n
87
SER
87
A
LYS
88
n
88
LYS
88
A
ASP
89
n
89
ASP
89
A
VAL
90
n
90
VAL
90
A
ILE
91
n
91
ILE
91
A
SER
92
n
92
SER
92
A
LEU
93
n
93
LEU
93
A
GLY
94
n
94
GLY
94
A
ASP
95
n
95
ASP
95
A
LEU
96
n
96
LEU
96
A
SER
97
n
97
SER
97
A
LEU
98
n
98
LEU
98
A
PRO
99
n
99
PRO
99
A
TYR
100
n
100
TYR
100
A
LYS
101
n
101
LYS
101
A
PHE
102
n
102
PHE
102
A
ILE
103
n
103
ILE
103
A
GLU
104
n
104
GLU
104
A
VAL
105
n
105
VAL
105
A
THR
106
n
106
THR
106
A
ASP
107
n
107
ASP
107
A
ALA
108
n
108
ALA
108
A
ASP
109
n
109
ASP
109
A
ASP
110
n
110
ASP
110
A
LEU
111
n
111
LEU
111
A
GLU
112
n
112
GLU
112
A
PRO
113
n
113
PRO
113
A
ILE
114
n
114
ILE
114
A
TYR
115
n
115
TYR
115
A
SER
116
n
116
SER
116
A
GLY
117
n
117
GLY
117
A
SER
118
n
118
SER
118
A
GLU
119
n
119
GLU
119
A
PHE
120
n
120
PHE
120
A
ASP
121
n
121
ASP
121
A
GLY
122
n
122
GLY
122
A
ILE
123
n
123
ILE
123
A
LEU
124
n
124
LEU
124
A
GLY
125
n
125
GLY
125
A
LEU
126
n
126
LEU
126
A
GLY
127
n
127
GLY
127
A
TRP
128
n
128
TRP
128
A
LYS
129
n
129
LYS
129
A
ASP
130
n
130
ASP
130
A
LEU
131
n
131
LEU
131
A
SER
132
n
132
SER
132
A
ILE
133
n
133
ILE
133
A
GLY
134
n
134
GLY
134
A
SER
135
n
135
SER
135
A
ILE
136
n
136
ILE
136
A
ASP
137
n
137
ASP
137
A
PRO
138
n
138
PRO
138
A
VAL
139
n
139
VAL
139
A
VAL
140
n
140
VAL
140
A
VAL
141
n
141
VAL
141
A
GLU
142
n
142
GLU
142
A
LEU
143
n
143
LEU
143
A
LYS
144
n
144
LYS
144
A
LYS
145
n
145
LYS
145
A
GLN
146
n
146
GLN
146
A
ASN
147
n
147
ASN
147
A
LYS
148
n
148
LYS
148
A
ILE
149
n
149
ILE
149
A
ASP
150
n
150
ASP
150
A
ASN
151
n
151
ASN
151
A
ALA
152
n
152
ALA
152
A
LEU
153
n
153
LEU
153
A
PHE
154
n
154
PHE
154
A
THR
155
n
155
THR
155
A
PHE
156
n
156
PHE
156
A
TYR
157
n
157
TYR
157
A
LEU
158
n
158
LEU
158
A
PRO
159
n
159
PRO
159
A
VAL
160
n
160
VAL
160
A
HIS
161
n
161
HIS
161
A
ASP
162
n
162
ASP
162
A
LYS
163
n
163
LYS
163
A
HIS
164
n
164
HIS
164
A
VAL
165
n
165
VAL
165
A
GLY
166
n
166
GLY
166
A
TYR
167
n
167
TYR
167
A
LEU
168
n
168
LEU
168
A
THR
169
n
169
THR
169
A
ILE
170
n
170
ILE
170
A
GLY
171
n
171
GLY
171
A
GLY
172
n
172
GLY
172
A
ILE
173
n
173
ILE
173
A
GLU
174
n
174
GLU
174
A
SER
175
n
175
SER
175
A
ASP
176
n
176
ASP
176
A
PHE
177
n
177
PHE
177
A
TYR
178
n
178
TYR
178
A
GLU
179
n
179
GLU
179
A
GLY
180
n
180
GLY
180
A
PRO
181
n
181
PRO
181
A
LEU
182
n
182
LEU
182
A
THR
183
n
183
THR
183
A
TYR
184
n
184
TYR
184
A
GLU
185
n
185
GLU
185
A
LYS
186
n
186
LYS
186
A
LEU
187
n
187
LEU
187
A
ASN
188
n
188
ASN
188
A
HIS
189
n
189
HIS
189
A
ASP
190
n
190
ASP
190
A
LEU
191
n
191
LEU
191
A
TYR
192
n
192
TYR
192
A
TRP
193
n
193
TRP
193
A
GLN
194
n
194
GLN
194
A
ILE
195
n
195
ILE
195
A
ASP
196
n
196
ASP
196
A
LEU
197
n
197
LEU
197
A
ASP
198
n
198
ASP
198
A
ILE
199
n
199
ILE
199
A
HIS
200
n
200
HIS
200
A
PHE
201
n
201
PHE
201
A
GLY
202
n
202
GLY
202
A
LYS
203
n
203
LYS
203
A
TYR
204
n
204
TYR
204
A
VAL
205
n
205
VAL
205
A
MET
206
n
206
MET
206
A
GLN
207
n
207
GLN
207
A
LYS
208
n
208
LYS
208
A
ALA
209
n
209
ALA
209
A
ASN
210
n
210
ASN
210
A
ALA
211
n
211
ALA
211
A
VAL
212
n
212
VAL
212
A
VAL
213
n
213
VAL
213
A
ASP
214
n
214
ASP
214
A
SER
215
n
215
SER
215
A
GLY
216
n
216
GLY
216
A
THR
217
n
217
THR
217
A
SER
218
n
218
SER
218
A
THR
219
n
219
THR
219
A
ILE
220
n
220
ILE
220
A
THR
221
n
221
THR
221
A
ALA
222
n
222
ALA
222
A
PRO
223
n
223
PRO
223
A
THR
224
n
224
THR
224
A
SER
225
n
225
SER
225
A
PHE
226
n
226
PHE
226
A
LEU
227
n
227
LEU
227
A
ASN
228
n
228
ASN
228
A
LYS
229
n
229
LYS
229
A
PHE
230
n
230
PHE
230
A
PHE
231
n
231
PHE
231
A
ARG
232
n
232
ARG
232
A
ASP
233
n
233
ASP
233
A
MET
234
n
234
MET
234
A
ASN
235
n
235
ASN
235
A
VAL
236
n
236
VAL
236
A
ILE
237
n
237
ILE
237
A
LYS
238
n
238
LYS
238
A
VAL
239
n
239
VAL
239
A
PRO
240
n
240
PRO
240
A
PHE
241
n
241
PHE
241
A
LEU
242
n
242
LEU
242
A
PRO
243
n
243
PRO
243
A
LEU
244
n
244
LEU
244
A
TYR
245
n
245
TYR
245
A
VAL
246
n
246
VAL
246
A
THR
247
n
247
THR
247
A
THR
248
n
248
THR
248
A
CYS
249
n
249
CYS
249
A
ASP
250
n
250
ASP
250
A
ASN
251
n
251
ASN
251
A
ASP
252
n
252
ASP
252
A
ASP
253
n
253
ASP
253
A
LEU
254
n
254
LEU
254
A
PRO
255
n
255
PRO
255
A
THR
256
n
256
THR
256
A
LEU
257
n
257
LEU
257
A
GLU
258
n
258
GLU
258
A
PHE
259
n
259
PHE
259
A
HIS
260
n
260
HIS
260
A
SER
261
n
261
SER
261
A
ARG
262
n
262
ARG
262
A
ASN
263
n
263
ASN
263
A
ASN
264
n
264
ASN
264
A
LYS
265
n
265
LYS
265
A
TYR
266
n
266
TYR
266
A
THR
267
n
267
THR
267
A
LEU
268
n
268
LEU
268
A
GLU
269
n
269
GLU
269
A
PRO
270
n
270
PRO
270
A
GLU
271
n
271
GLU
271
A
PHE
272
n
272
PHE
272
A
TYR
273
n
273
TYR
273
A
MET
274
n
274
MET
274
A
ASP
275
n
275
ASP
275
A
PRO
276
n
276
PRO
276
A
LEU
277
n
277
LEU
277
A
SER
278
n
278
SER
278
A
ASP
279
n
279
ASP
279
A
ILE
280
n
280
ILE
280
A
ASP
281
n
281
ASP
281
A
PRO
282
n
282
PRO
282
A
ALA
283
n
283
ALA
283
A
LEU
284
n
284
LEU
284
A
CYS
285
n
285
CYS
285
A
MET
286
n
286
MET
286
A
LEU
287
n
287
LEU
287
A
TYR
288
n
288
TYR
288
A
ILE
289
n
289
ILE
289
A
LEU
290
n
290
LEU
290
A
PRO
291
n
291
PRO
291
A
VAL
292
n
292
VAL
292
A
ASP
293
n
293
ASP
293
A
ILE
294
n
294
ILE
294
A
ASP
295
n
295
ASP
295
A
ASP
296
n
296
ASP
296
A
ASN
297
n
297
ASN
297
A
THR
298
n
298
THR
298
A
PHE
299
n
299
PHE
299
A
ILE
300
n
300
ILE
300
A
LEU
301
n
301
LEU
301
A
GLY
302
n
302
GLY
302
A
ASP
303
n
303
ASP
303
A
PRO
304
n
304
PRO
304
A
PHE
305
n
305
PHE
305
A
MET
306
n
306
MET
306
A
ARG
307
n
307
ARG
307
A
LYS
308
n
308
LYS
308
A
TYR
309
n
309
TYR
309
A
PHE
310
n
310
PHE
310
A
THR
311
n
311
THR
311
A
VAL
312
n
312
VAL
312
A
PHE
313
n
313
PHE
313
A
ASP
314
n
314
ASP
314
A
TYR
315
n
315
TYR
315
A
GLU
316
n
316
GLU
316
A
LYS
317
n
317
LYS
317
A
GLU
318
n
318
GLU
318
A
SER
319
n
319
SER
319
A
VAL
320
n
320
VAL
320
A
GLY
321
n
321
GLY
321
A
PHE
322
n
322
PHE
322
A
ALA
323
n
323
ALA
323
A
VAL
324
n
324
VAL
324
A
ALA
325
n
325
ALA
325
A
LYS
326
n
326
LYS
326
A
ASN
327
n
327
ASN
327
A
LEU
328
n
328
LEU
328
A
SER
1
n
1
SER
1
B
GLU
2
n
2
GLU
2
B
ASN
3
n
3
ASN
3
B
ASP
4
n
4
ASP
4
B
SER
5
n
5
SER
5
B
ILE
6
n
6
ILE
6
B
GLU
7
n
7
GLU
7
B
LEU
8
n
8
LEU
8
B
ASP
9
n
9
ASP
9
B
ASP
10
n
10
ASP
10
B
VAL
11
n
11
VAL
11
B
ALA
12
n
12
ALA
12
B
ASN
13
n
13
ASN
13
B
LEU
14
n
14
LEU
14
B
MET
15
n
15
MET
15
B
PHE
16
n
16
PHE
16
B
TYR
17
n
17
TYR
17
B
GLY
18
n
18
GLY
18
B
GLU
19
n
19
GLU
19
B
GLY
20
n
20
GLY
20
B
GLN
21
n
21
GLN
21
B
ILE
22
n
22
ILE
22
B
GLY
23
n
23
GLY
23
B
THR
24
n
24
THR
24
B
ASN
25
n
25
ASN
25
B
LYS
26
n
26
LYS
26
B
GLN
27
n
27
GLN
27
B
PRO
28
n
28
PRO
28
B
PHE
29
n
29
PHE
29
B
MET
30
n
30
MET
30
B
PHE
31
n
31
PHE
31
B
ILE
32
n
32
ILE
32
B
PHE
33
n
33
PHE
33
B
ASP
34
n
34
ASP
34
B
THR
35
n
35
THR
35
B
GLY
36
n
36
GLY
36
B
SER
37
n
37
SER
37
B
ALA
38
n
38
ALA
38
B
ASN
39
n
39
ASN
39
B
LEU
40
n
40
LEU
40
B
TRP
41
n
41
TRP
41
B
VAL
42
n
42
VAL
42
B
PRO
43
n
43
PRO
43
B
SER
44
n
44
SER
44
B
VAL
45
n
45
VAL
45
B
ASN
46
n
46
ASN
46
B
CYS
47
n
47
CYS
47
B
ASP
48
n
48
ASP
48
B
SER
49
n
49
SER
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
CYS
52
n
52
CYS
52
B
SER
53
n
53
SER
53
B
THR
54
n
54
THR
54
B
LYS
55
n
55
LYS
55
B
HIS
56
n
56
HIS
56
B
LEU
57
n
57
LEU
57
B
TYR
58
n
58
TYR
58
B
ASP
59
n
59
ASP
59
B
ALA
60
n
60
ALA
60
B
SER
61
n
61
SER
61
B
ALA
62
n
62
ALA
62
B
SER
63
n
63
SER
63
B
LYS
64
n
64
LYS
64
B
SER
65
n
65
SER
65
B
TYR
66
n
66
TYR
66
B
GLU
67
n
67
GLU
67
B
LYS
68
n
68
LYS
68
B
ASP
69
n
69
ASP
69
B
GLY
70
n
70
GLY
70
B
THR
71
n
71
THR
71
B
LYS
72
n
72
LYS
72
B
VAL
73
n
73
VAL
73
B
GLU
74
n
74
GLU
74
B
ILE
75
n
75
ILE
75
B
SER
76
n
76
SER
76
B
TYR
77
n
77
TYR
77
B
GLY
78
n
78
GLY
78
B
SER
79
n
79
SER
79
B
GLY
80
n
80
GLY
80
B
THR
81
n
81
THR
81
B
VAL
82
n
82
VAL
82
B
ARG
83
n
83
ARG
83
B
GLY
84
n
84
GLY
84
B
TYR
85
n
85
TYR
85
B
PHE
86
n
86
PHE
86
B
SER
87
n
87
SER
87
B
LYS
88
n
88
LYS
88
B
ASP
89
n
89
ASP
89
B
VAL
90
n
90
VAL
90
B
ILE
91
n
91
ILE
91
B
SER
92
n
92
SER
92
B
LEU
93
n
93
LEU
93
B
GLY
94
n
94
GLY
94
B
ASP
95
n
95
ASP
95
B
LEU
96
n
96
LEU
96
B
SER
97
n
97
SER
97
B
LEU
98
n
98
LEU
98
B
PRO
99
n
99
PRO
99
B
TYR
100
n
100
TYR
100
B
LYS
101
n
101
LYS
101
B
PHE
102
n
102
PHE
102
B
ILE
103
n
103
ILE
103
B
GLU
104
n
104
GLU
104
B
VAL
105
n
105
VAL
105
B
THR
106
n
106
THR
106
B
ASP
107
n
107
ASP
107
B
ALA
108
n
108
ALA
108
B
ASP
109
n
109
ASP
109
B
ASP
110
n
110
ASP
110
B
LEU
111
n
111
LEU
111
B
GLU
112
n
112
GLU
112
B
PRO
113
n
113
PRO
113
B
ILE
114
n
114
ILE
114
B
TYR
115
n
115
TYR
115
B
SER
116
n
116
SER
116
B
GLY
117
n
117
GLY
117
B
SER
118
n
118
SER
118
B
GLU
119
n
119
GLU
119
B
PHE
120
n
120
PHE
120
B
ASP
121
n
121
ASP
121
B
GLY
122
n
122
GLY
122
B
ILE
123
n
123
ILE
123
B
LEU
124
n
124
LEU
124
B
GLY
125
n
125
GLY
125
B
LEU
126
n
126
LEU
126
B
GLY
127
n
127
GLY
127
B
TRP
128
n
128
TRP
128
B
LYS
129
n
129
LYS
129
B
ASP
130
n
130
ASP
130
B
LEU
131
n
131
LEU
131
B
SER
132
n
132
SER
132
B
ILE
133
n
133
ILE
133
B
GLY
134
n
134
GLY
134
B
SER
135
n
135
SER
135
B
ILE
136
n
136
ILE
136
B
ASP
137
n
137
ASP
137
B
PRO
138
n
138
PRO
138
B
VAL
139
n
139
VAL
139
B
VAL
140
n
140
VAL
140
B
VAL
141
n
141
VAL
141
B
GLU
142
n
142
GLU
142
B
LEU
143
n
143
LEU
143
B
LYS
144
n
144
LYS
144
B
LYS
145
n
145
LYS
145
B
GLN
146
n
146
GLN
146
B
ASN
147
n
147
ASN
147
B
LYS
148
n
148
LYS
148
B
ILE
149
n
149
ILE
149
B
ASP
150
n
150
ASP
150
B
ASN
151
n
151
ASN
151
B
ALA
152
n
152
ALA
152
B
LEU
153
n
153
LEU
153
B
PHE
154
n
154
PHE
154
B
THR
155
n
155
THR
155
B
PHE
156
n
156
PHE
156
B
TYR
157
n
157
TYR
157
B
LEU
158
n
158
LEU
158
B
PRO
159
n
159
PRO
159
B
VAL
160
n
160
VAL
160
B
HIS
161
n
161
HIS
161
B
ASP
162
n
162
ASP
162
B
LYS
163
n
163
LYS
163
B
HIS
164
n
164
HIS
164
B
VAL
165
n
165
VAL
165
B
GLY
166
n
166
GLY
166
B
TYR
167
n
167
TYR
167
B
LEU
168
n
168
LEU
168
B
THR
169
n
169
THR
169
B
ILE
170
n
170
ILE
170
B
GLY
171
n
171
GLY
171
B
GLY
172
n
172
GLY
172
B
ILE
173
n
173
ILE
173
B
GLU
174
n
174
GLU
174
B
SER
175
n
175
SER
175
B
ASP
176
n
176
ASP
176
B
PHE
177
n
177
PHE
177
B
TYR
178
n
178
TYR
178
B
GLU
179
n
179
GLU
179
B
GLY
180
n
180
GLY
180
B
PRO
181
n
181
PRO
181
B
LEU
182
n
182
LEU
182
B
THR
183
n
183
THR
183
B
TYR
184
n
184
TYR
184
B
GLU
185
n
185
GLU
185
B
LYS
186
n
186
LYS
186
B
LEU
187
n
187
LEU
187
B
ASN
188
n
188
ASN
188
B
HIS
189
n
189
HIS
189
B
ASP
190
n
190
ASP
190
B
LEU
191
n
191
LEU
191
B
TYR
192
n
192
TYR
192
B
TRP
193
n
193
TRP
193
B
GLN
194
n
194
GLN
194
B
ILE
195
n
195
ILE
195
B
ASP
196
n
196
ASP
196
B
LEU
197
n
197
LEU
197
B
ASP
198
n
198
ASP
198
B
ILE
199
n
199
ILE
199
B
HIS
200
n
200
HIS
200
B
PHE
201
n
201
PHE
201
B
GLY
202
n
202
GLY
202
B
LYS
203
n
203
LYS
203
B
TYR
204
n
204
TYR
204
B
VAL
205
n
205
VAL
205
B
MET
206
n
206
MET
206
B
GLN
207
n
207
GLN
207
B
LYS
208
n
208
LYS
208
B
ALA
209
n
209
ALA
209
B
ASN
210
n
210
ASN
210
B
ALA
211
n
211
ALA
211
B
VAL
212
n
212
VAL
212
B
VAL
213
n
213
VAL
213
B
ASP
214
n
214
ASP
214
B
SER
215
n
215
SER
215
B
GLY
216
n
216
GLY
216
B
THR
217
n
217
THR
217
B
SER
218
n
218
SER
218
B
THR
219
n
219
THR
219
B
ILE
220
n
220
ILE
220
B
THR
221
n
221
THR
221
B
ALA
222
n
222
ALA
222
B
PRO
223
n
223
PRO
223
B
THR
224
n
224
THR
224
B
SER
225
n
225
SER
225
B
PHE
226
n
226
PHE
226
B
LEU
227
n
227
LEU
227
B
ASN
228
n
228
ASN
228
B
LYS
229
n
229
LYS
229
B
PHE
230
n
230
PHE
230
B
PHE
231
n
231
PHE
231
B
ARG
232
n
232
ARG
232
B
ASP
233
n
233
ASP
233
B
MET
234
n
234
MET
234
B
ASN
235
n
235
ASN
235
B
VAL
236
n
236
VAL
236
B
ILE
237
n
237
ILE
237
B
LYS
238
n
238
LYS
238
B
VAL
239
n
239
VAL
239
B
PRO
240
n
240
PRO
240
B
PHE
241
n
241
PHE
241
B
LEU
242
n
242
LEU
242
B
PRO
243
n
243
PRO
243
B
LEU
244
n
244
LEU
244
B
TYR
245
n
245
TYR
245
B
VAL
246
n
246
VAL
246
B
THR
247
n
247
THR
247
B
THR
248
n
248
THR
248
B
CYS
249
n
249
CYS
249
B
ASP
250
n
250
ASP
250
B
ASN
251
n
251
ASN
251
B
ASP
252
n
252
ASP
252
B
ASP
253
n
253
ASP
253
B
LEU
254
n
254
LEU
254
B
PRO
255
n
255
PRO
255
B
THR
256
n
256
THR
256
B
LEU
257
n
257
LEU
257
B
GLU
258
n
258
GLU
258
B
PHE
259
n
259
PHE
259
B
HIS
260
n
260
HIS
260
B
SER
261
n
261
SER
261
B
ARG
262
n
262
ARG
262
B
ASN
263
n
263
ASN
263
B
ASN
264
n
264
ASN
264
B
LYS
265
n
265
LYS
265
B
TYR
266
n
266
TYR
266
B
THR
267
n
267
THR
267
B
LEU
268
n
268
LEU
268
B
GLU
269
n
269
GLU
269
B
PRO
270
n
270
PRO
270
B
GLU
271
n
271
GLU
271
B
PHE
272
n
272
PHE
272
B
TYR
273
n
273
TYR
273
B
MET
274
n
274
MET
274
B
ASP
275
n
275
ASP
275
B
PRO
276
n
276
PRO
276
B
LEU
277
n
277
LEU
277
B
SER
278
n
278
SER
278
B
ASP
279
n
279
ASP
279
B
ILE
280
n
280
ILE
280
B
ASP
281
n
281
ASP
281
B
PRO
282
n
282
PRO
282
B
ALA
283
n
283
ALA
283
B
LEU
284
n
284
LEU
284
B
CYS
285
n
285
CYS
285
B
MET
286
n
286
MET
286
B
LEU
287
n
287
LEU
287
B
TYR
288
n
288
TYR
288
B
ILE
289
n
289
ILE
289
B
LEU
290
n
290
LEU
290
B
PRO
291
n
291
PRO
291
B
VAL
292
n
292
VAL
292
B
ASP
293
n
293
ASP
293
B
ILE
294
n
294
ILE
294
B
ASP
295
n
295
ASP
295
B
ASP
296
n
296
ASP
296
B
ASN
297
n
297
ASN
297
B
THR
298
n
298
THR
298
B
PHE
299
n
299
PHE
299
B
ILE
300
n
300
ILE
300
B
LEU
301
n
301
LEU
301
B
GLY
302
n
302
GLY
302
B
ASP
303
n
303
ASP
303
B
PRO
304
n
304
PRO
304
B
PHE
305
n
305
PHE
305
B
MET
306
n
306
MET
306
B
ARG
307
n
307
ARG
307
B
LYS
308
n
308
LYS
308
B
TYR
309
n
309
TYR
309
B
PHE
310
n
310
PHE
310
B
THR
311
n
311
THR
311
B
VAL
312
n
312
VAL
312
B
PHE
313
n
313
PHE
313
B
ASP
314
n
314
ASP
314
B
TYR
315
n
315
TYR
315
B
GLU
316
n
316
GLU
316
B
LYS
317
n
317
LYS
317
B
GLU
318
n
318
GLU
318
B
SER
319
n
319
SER
319
B
VAL
320
n
320
VAL
320
B
GLY
321
n
321
GLY
321
B
PHE
322
n
322
PHE
322
B
ALA
323
n
323
ALA
323
B
VAL
324
n
324
VAL
324
B
ALA
325
n
325
ALA
325
B
LYS
326
n
326
LYS
326
B
ASN
327
n
327
ASN
327
B
LEU
328
n
328
LEU
328
B
IVA
348
n
1
IVA
1
C
VAL
348
n
2
VAL
2
C
VAL
349
n
3
VAL
3
C
STA
351
n
4
STA
4
C
ALA
352
n
5
ALA
5
C
STA
353
n
6
STA
6
C
IVA
349
n
1
IVA
349
D
VAL
350
n
2
VAL
350
D
VAL
351
n
3
VAL
351
D
STA
352
n
4
STA
352
D
ALA
353
n
5
ALA
353
D
STA
354
n
6
STA
354
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
8
octameric
software_defined_assembly
PISA
4
tetrameric
1420
-12
14380
1270
-10
14230
13410
-93
49190
5200
-43
26090
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_555
-x,-x+y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
41.1296666667
A
N
TYR
100
A
N
TYR
100
A
O
ASP
89
A
O
ASP
89
A
N
SER
92
A
N
SER
92
A
O
GLN
21
A
O
GLN
21
A
O
ILE
22
A
O
ILE
22
A
N
GLN
27
A
N
GLN
27
A
N
TYR
77
A
N
TYR
77
A
O
GLY
80
A
O
GLY
80
A
O
TYR
85
A
O
TYR
85
A
N
GLU
104
A
N
GLU
104
A
O
ILE
103
A
O
ILE
103
A
N
VAL
42
A
N
VAL
42
A
N
TRP
41
A
N
TRP
41
A
O
ILE
123
A
O
ILE
123
A
O
ILE
220
A
O
ILE
220
A
N
LEU
290
A
N
LEU
290
A
N
ILE
237
A
N
ILE
237
A
O
VAL
246
A
O
VAL
246
A
N
THR
247
A
N
THR
247
A
O
CYS
285
A
O
CYS
285
A
N
LEU
268
A
N
LEU
268
A
O
LEU
257
A
O
LEU
257
A
O
HIS
260
A
O
HIS
260
A
N
ASP
198
A
N
ASP
198
A
O
ILE
199
A
O
ILE
199
A
N
MET
206
A
N
MET
206
A
N
VAL
212
A
N
VAL
212
A
O
PHE
299
A
O
PHE
299
A
O
ALA
323
A
O
ALA
323
A
N
PHE
310
A
N
PHE
310
A
N
PHE
313
A
N
PHE
313
A
O
PHE
154
A
O
PHE
154
A
O
TYR
157
A
O
TYR
157
A
N
TYR
167
A
N
TYR
167
A
O
LEU
168
A
O
LEU
168
A
N
ILE
6
A
N
ILE
6
A
O
ASP
9
A
O
ASP
9
A
N
TYR
17
A
N
TYR
17
B
O
TYR
266
B
O
TYR
266
B
N
PHE
259
B
N
PHE
259
B
N
HIS
260
B
N
HIS
260
B
O
ASP
198
B
O
ASP
198
B
N
ILE
199
B
N
ILE
199
B
O
MET
206
B
O
MET
206
B
N
VAL
212
B
N
VAL
212
B
O
PHE
299
B
O
PHE
299
B
O
ILE
300
B
O
ILE
300
B
N
THR
221
B
N
THR
221
B
N
ALA
222
B
N
ALA
222
B
O
LEU
290
B
O
LEU
290
B
O
ILE
237
B
O
ILE
237
B
N
VAL
246
B
N
VAL
246
B
O
THR
247
B
O
THR
247
B
N
CYS
285
B
N
CYS
285
B
N
MET
286
B
N
MET
286
B
O
ASP
275
B
O
ASP
275
B
O
ALA
323
B
O
ALA
323
B
N
PHE
310
B
N
PHE
310
B
N
PHE
313
B
N
PHE
313
B
O
PHE
154
B
O
PHE
154
B
N
TYR
157
B
N
TYR
157
B
O
TYR
167
B
O
TYR
167
B
O
LEU
168
B
O
LEU
168
B
N
ILE
6
B
N
ILE
6
B
N
VAL
11
B
N
VAL
11
B
O
MET
15
B
O
MET
15
B
N
ILE
22
B
N
ILE
22
B
O
GLN
27
B
O
GLN
27
B
N
ILE
32
B
N
ILE
32
B
O
GLY
122
B
O
GLY
122
B
N
GLY
122
B
N
GLY
122
B
O
MET
30
B
O
MET
30
B
O
PHE
31
B
O
PHE
31
B
N
GLY
18
B
N
GLY
18
B
O
GLN
21
B
O
GLN
21
B
N
SER
92
B
N
SER
92
B
N
LYS
88
B
N
LYS
88
B
O
GLU
67
B
O
GLU
67
B
O
VAL
73
B
O
VAL
73
B
N
GLY
84
B
N
GLY
84
B
N
LEU
93
B
N
LEU
93
B
O
LEU
96
B
O
LEU
96
1
A
A
O
N
LYS
LEU
326
328
2.13
1
B
B
O
OG
LEU
SER
14
218
2.16
1
C
STA
4
33.15
1
D
STA
352
29.66
1
C
C
STA
ALA
4
5
-117.25
1
D
D
STA
ALA
352
353
-120.42
1
13.87
1.50
119.30
133.17
A
A
A
C
N
CA
GLY
PRO
PRO
180
181
181
Y
1
-12.87
2.10
128.40
115.53
A
A
A
C
N
CD
GLY
PRO
PRO
180
181
181
Y
1
9.91
1.50
119.30
129.21
A
A
A
C
N
CA
LEU
PRO
PRO
254
255
255
Y
1
16.93
2.70
111.00
127.93
B
B
B
N
CA
C
LEU
LEU
LEU
242
242
242
N
1
-13.05
1.60
110.90
97.85
C
C
C
CG1
CB
CG2
VAL
VAL
VAL
2
2
2
N
1
24.49
2.20
117.20
141.69
C
C
C
CA
C
N
STA
STA
ALA
4
4
5
Y
1
-13.65
1.60
110.90
97.25
D
D
D
CG1
CB
CG2
VAL
VAL
VAL
350
350
350
N
1
19.79
2.20
117.20
136.99
D
D
D
CA
C
N
STA
STA
ALA
352
352
353
Y
1
A
B
OD2
NH2
ASP
ARG
198
232
1.23
1_555
3_454
1
A
B
NE2
O
GLN
ASP
207
233
1.59
1_555
3_454
1
A
B
CG
NH2
ASP
ARG
198
232
1.64
1_555
3_454
1
A
B
CE
NZ
LYS
LYS
145
163
1.97
1_555
5_665
1
A
B
CA
CB
GLY
PRO
134
282
2.01
1_555
5_665
1
A
B
O
O
LYS
LYS
68
64
2.15
1_555
2_665
1
A
A
NZ
OG1
LYS
THR
72
248
2.17
1_555
5_665
1
A
B
OD2
CZ
ASP
ARG
198
232
2.19
1_555
3_454
1
A
ASN
3
-159.35
-143.50
1
A
ASP
4
-168.19
109.61
1
A
ASP
10
-35.36
150.70
1
A
ALA
12
50.22
19.33
1
A
ASN
13
59.78
14.16
1
A
MET
15
158.15
141.10
1
A
ASN
25
-64.77
10.24
1
A
SER
61
-48.26
-7.65
1
A
ASP
69
-139.47
-83.63
1
A
ILE
114
-52.92
-70.45
1
A
LEU
126
-162.17
11.88
1
A
GLN
146
-68.39
21.93
1
A
ASN
147
37.75
70.73
1
A
ASP
150
-27.45
-55.10
1
A
HIS
161
63.54
-45.51
1
A
ASP
162
-170.04
-124.04
1
A
LYS
163
78.80
-65.30
1
A
VAL
165
-78.09
-160.85
1
A
PRO
181
-16.22
153.06
1
A
LYS
186
-52.77
-125.55
1
A
LEU
187
-162.12
-8.55
1
A
ASN
188
66.04
-70.38
1
A
ASP
190
-108.22
65.60
1
A
LEU
191
-123.64
-98.08
1
A
TRP
193
-62.61
95.30
1
A
ASP
196
-106.30
78.35
1
A
HIS
200
178.90
164.72
1
A
PHE
201
-146.61
-61.95
1
A
TYR
204
-105.94
75.18
1
A
ASP
233
-161.39
-162.47
1
A
MET
234
60.35
96.73
1
A
VAL
239
-48.96
152.22
1
A
PRO
240
-43.35
156.63
1
A
PHE
241
-23.24
134.54
1
A
LEU
242
66.63
132.97
1
A
LEU
244
171.13
179.10
1
A
ASN
251
-58.07
179.77
1
A
ASP
252
-146.38
15.54
1
A
TYR
273
-106.65
42.91
1
A
ASP
275
47.33
170.81
1
A
PRO
276
-78.79
-87.83
1
A
LEU
277
70.56
38.57
1
A
SER
278
-82.29
-74.99
1
A
ASP
279
-35.87
-38.50
1
A
ASP
281
52.37
105.07
1
A
PRO
282
-65.80
13.84
1
A
ILE
294
-99.97
-137.63
1
A
ASP
296
80.60
-134.92
1
A
ASN
297
-109.95
43.53
1
A
ALA
323
176.57
135.35
1
A
VAL
324
-41.99
107.65
1
A
ASN
327
-45.29
36.84
1
B
GLU
2
-82.65
-73.72
1
B
ASN
3
57.63
-136.33
1
B
ASP
4
168.00
127.43
1
B
ALA
12
56.94
19.14
1
B
ASN
13
70.36
-6.92
1
B
MET
15
177.64
135.89
1
B
TYR
66
-51.44
170.89
1
B
ASP
69
-140.48
-71.19
1
B
LEU
98
-177.62
132.96
1
B
ASP
109
-26.91
-77.71
1
B
ASP
110
-42.22
-11.76
1
B
SER
135
48.02
77.38
1
B
PRO
159
-102.21
-110.63
1
B
VAL
160
-161.42
117.11
1
B
HIS
161
44.07
-75.58
1
B
LYS
163
-4.11
-65.67
1
B
HIS
164
-149.13
-144.24
1
B
ASP
176
-50.56
-1.22
1
B
LEU
191
-92.96
-94.08
1
B
PHE
201
-109.78
-74.59
1
B
LYS
203
-156.68
-30.66
1
B
LYS
208
20.82
72.10
1
B
THR
224
-23.85
-53.56
1
B
PHE
230
-179.97
-35.01
1
B
ARG
232
-64.15
-84.20
1
B
ASP
233
-49.80
-74.21
1
B
MET
234
-35.91
137.56
1
B
PRO
240
-32.57
94.09
1
B
PHE
241
65.53
79.75
1
B
LEU
242
72.89
-36.97
1
B
PRO
243
-7.77
-96.49
1
B
LEU
244
-119.15
-156.78
1
B
ASP
253
-106.55
47.10
1
B
LEU
257
-34.85
116.01
1
B
ARG
262
-55.88
-3.85
1
B
ASN
264
159.15
-177.41
1
B
LEU
277
-59.49
27.58
1
B
SER
278
-15.91
-81.47
1
B
ASP
279
-58.19
33.75
1
B
ILE
280
-153.23
-64.15
1
B
ALA
283
-83.55
-74.26
1
B
ASP
296
-59.29
-160.01
1
B
ASN
297
-100.53
53.21
1
B
ARG
307
-68.55
8.16
1
B
ASN
327
-107.91
-99.78
0.29
0.22
2.80
10.00
650
12147
5.000
RANDOM
1
3.000
MOLECULAR REPLACEMENT
PLASMEPSIN II, PDB ENTRY 1SME
2.80
10.00
28
5342
0
0
5314
0.016
2.20
27.00
1.90
2.800
20.000
1LS5
15253
1.000
0.096
0.083
1
8.5000
79.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
X-PLOR
3.1
PLASMEPSIN IV
Crystal structure of plasmepsin IV from P. falciparum in complex with pepstatin A
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
ASP
59
A
ASP
59
HELX_P
A
SER
63
A
SER
63
5
1
5
A
ALA
108
A
ALA
108
HELX_P
A
GLU
112
A
GLU
112
5
2
5
A
PRO
113
A
PRO
113
HELX_P
A
SER
118
A
SER
118
1
3
6
A
TRP
128
A
TRP
128
HELX_P
A
SER
132
A
SER
132
5
4
5
A
PRO
138
A
PRO
138
HELX_P
A
GLN
146
A
GLN
146
1
5
9
A
GLU
174
A
GLU
174
HELX_P
A
TYR
178
A
TYR
178
5
6
5
A
PRO
223
A
PRO
223
HELX_P
A
LYS
229
A
LYS
229
1
7
7
A
PHE
230
A
PHE
230
HELX_P
A
ARG
232
A
ARG
232
5
8
3
A
GLU
269
A
GLU
269
HELX_P
A
MET
274
A
MET
274
5
9
6
A
GLY
302
A
GLY
302
HELX_P
A
ARG
307
A
ARG
307
1
10
6
B
ALA
108
B
ALA
108
HELX_P
B
GLU
112
B
GLU
112
5
11
5
B
PRO
113
B
PRO
113
HELX_P
B
SER
118
B
SER
118
1
12
6
B
PRO
138
B
PRO
138
HELX_P
B
GLN
146
B
GLN
146
1
13
9
B
GLU
174
B
GLU
174
HELX_P
B
TYR
178
B
TYR
178
5
14
5
B
PRO
223
B
PRO
223
HELX_P
B
ARG
232
B
ARG
232
1
15
10
B
GLU
269
B
GLU
269
HELX_P
B
TYR
273
B
TYR
273
5
16
5
B
GLY
302
B
GLY
302
HELX_P
B
ARG
307
B
ARG
307
1
17
6
disulf
2.028
A
CYS
47
A
SG
CYS
47
1_555
A
CYS
52
A
SG
CYS
52
1_555
disulf
2.032
A
CYS
249
A
SG
CYS
249
1_555
A
CYS
285
A
SG
CYS
285
1_555
disulf
2.027
B
CYS
47
B
SG
CYS
47
1_555
B
CYS
52
B
SG
CYS
52
1_555
disulf
2.018
B
CYS
249
B
SG
CYS
249
1_555
B
CYS
285
B
SG
CYS
285
1_555
covale
1.347
C
IVA
1
C
C
IVA
1
1_555
C
VAL
2
C
N
VAL
2
1_555
covale
1.338
C
VAL
3
C
C
VAL
3
1_555
C
STA
4
C
N
STA
4
1_555
covale
1.360
C
STA
4
C
C
STA
4
1_555
C
ALA
5
C
N
ALA
5
1_555
covale
1.362
C
ALA
5
C
C
ALA
5
1_555
C
STA
6
C
N
STA
6
1_555
covale
1.339
D
IVA
349
D
C
IVA
1
1_555
D
VAL
350
D
N
VAL
2
1_555
covale
1.346
D
VAL
351
D
C
VAL
3
1_555
D
STA
352
D
N
STA
4
1_555
covale
1.369
D
STA
352
D
C
STA
4
1_555
D
ALA
353
D
N
ALA
5
1_555
covale
1.341
D
ALA
353
D
C
ALA
5
1_555
D
STA
354
D
N
STA
6
1_555
HYDROLASE/HYDROLASE INHIBITOR
EUKARYOTIC ASPARTIC PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR complex
A
GLU
112
A
GLU
112
1
A
PRO
113
A
PRO
113
-0.14
A
LEU
242
A
LEU
242
1
A
PRO
243
A
PRO
243
-0.33
A
ASP
275
A
ASP
275
1
A
PRO
276
A
PRO
276
-0.05
B
GLU
112
B
GLU
112
1
B
PRO
113
B
PRO
113
-0.23
Q8IM16_PLAF7
UNP
1
122
Q8IM16
SENDSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKHLYDASASKSYEKDGTKVEISYGSG
TVRGYFSKDVISLGDLSLPYKFIEVTDADDLEPIYSGSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPV
HDKHVGYLTIGGIESDFYEGPLTYEKLNHDLYWQIDLDIHFGKYVMQKANAVVDSGTSTITAPTSFLNKFFRDMNVIKVP
FLPLYVTTCDNDDLPTLEFHSRNNKYTLEPEFYMDPLSDIDPALCMLYILPVDIDDNTFILGDPFMRKYFTVFDYEKESV
GFAVAKNL
1LS5
PDB
2
1LS5
122
449
1LS5
1
328
Q8IM16
A
1
1
328
122
449
1LS5
1
328
Q8IM16
B
1
1
328
1
6
1LS5
1
6
1LS5
C
2
1
6
349
354
1LS5
349
354
1LS5
D
2
1
6
4
5
2
3
5
6
7
4
14
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
96
A
LEU
96
A
TYR
100
A
TYR
100
A
ASP
89
A
ASP
89
A
LEU
93
A
LEU
93
A
GLY
20
A
GLY
20
A
ILE
22
A
ILE
22
A
GLN
27
A
GLN
27
A
PHE
29
A
PHE
29
A
LYS
72
A
LYS
72
A
TYR
77
A
TYR
77
A
GLY
80
A
GLY
80
A
PHE
86
A
PHE
86
A
ILE
103
A
ILE
103
A
ASP
107
A
ASP
107
A
LEU
40
A
LEU
40
A
PRO
43
A
PRO
43
A
ILE
123
A
ILE
123
A
LEU
124
A
LEU
124
A
ILE
220
A
ILE
220
A
ALA
222
A
ALA
222
A
ILE
289
A
ILE
289
A
PRO
291
A
PRO
291
A
ILE
237
A
ILE
237
A
LYS
238
A
LYS
238
A
TYR
245
A
TYR
245
A
THR
248
A
THR
248
A
LEU
284
A
LEU
284
A
MET
286
A
MET
286
A
LYS
265
A
LYS
265
A
LEU
268
A
LEU
268
A
LEU
257
A
LEU
257
A
HIS
260
A
HIS
260
A
GLN
194
A
GLN
194
A
HIS
200
A
HIS
200
A
MET
206
A
MET
206
A
VAL
213
A
VAL
213
A
PHE
299
A
PHE
299
A
LEU
301
A
LEU
301
A
SER
319
A
SER
319
A
VAL
324
A
VAL
324
A
TYR
309
A
TYR
309
A
ASP
314
A
ASP
314
A
PHE
154
A
PHE
154
A
TYR
157
A
TYR
157
A
GLY
166
A
GLY
166
A
ILE
170
A
ILE
170
A
SER
5
A
SER
5
A
ASP
10
A
ASP
10
A
PHE
16
A
PHE
16
A
TYR
17
A
TYR
17
B
LYS
265
B
LYS
265
B
THR
267
B
THR
267
B
GLU
258
B
GLU
258
B
HIS
260
B
HIS
260
B
ASP
196
B
ASP
196
B
HIS
200
B
HIS
200
B
VAL
205
B
VAL
205
B
VAL
213
B
VAL
213
B
THR
298
B
THR
298
B
LEU
301
B
LEU
301
B
ILE
220
B
ILE
220
B
ALA
222
B
ALA
222
B
ILE
289
B
ILE
289
B
PRO
291
B
PRO
291
B
ILE
237
B
ILE
237
B
LYS
238
B
LYS
238
B
TYR
245
B
TYR
245
B
THR
248
B
THR
248
B
LEU
284
B
LEU
284
B
MET
286
B
MET
286
B
ASP
275
B
ASP
275
B
PRO
276
B
PRO
276
B
SER
319
B
SER
319
B
VAL
324
B
VAL
324
B
TYR
309
B
TYR
309
B
ASP
314
B
ASP
314
B
LEU
153
B
LEU
153
B
TYR
157
B
TYR
157
B
GLY
166
B
GLY
166
B
ILE
170
B
ILE
170
B
SER
5
B
SER
5
B
VAL
11
B
VAL
11
B
MET
15
B
MET
15
B
ILE
22
B
ILE
22
B
GLN
27
B
GLN
27
B
ASP
34
B
ASP
34
B
GLY
122
B
GLY
122
B
GLY
125
B
GLY
125
B
GLN
27
B
GLN
27
B
ASP
34
B
ASP
34
B
MET
15
B
MET
15
B
ILE
22
B
ILE
22
B
GLY
84
B
GLY
84
B
LEU
93
B
LEU
93
B
GLU
67
B
GLU
67
B
VAL
73
B
VAL
73
B
GLY
84
B
GLY
84
B
LEU
93
B
LEU
93
B
LEU
96
B
LEU
96
B
VAL
105
B
VAL
105
BINDING SITE FOR CHAIN C OF PEPSTATIN
Software
17
BINDING SITE FOR CHAIN D OF PEPSTATIN
Software
16
A
LEU
14
A
LEU
14
17
1_555
A
MET
15
A
MET
15
17
1_555
A
ASP
34
A
ASP
34
17
1_555
A
GLY
36
A
GLY
36
17
1_555
A
SER
37
A
SER
37
17
1_555
A
SER
76
A
SER
76
17
1_555
A
TYR
77
A
TYR
77
17
1_555
A
GLY
78
A
GLY
78
17
1_555
A
SER
79
A
SER
79
17
1_555
A
ILE
114
A
ILE
114
17
1_555
A
ILE
123
A
ILE
123
17
1_555
A
TYR
192
A
TYR
192
17
1_555
A
ASP
214
A
ASP
214
17
1_555
A
GLY
216
A
GLY
216
17
1_555
A
THR
217
A
THR
217
17
1_555
A
SER
218
A
SER
218
17
1_555
A
ILE
294
A
ILE
294
17
1_555
A
ASP
109
A
ASP
109
16
1_555
B
MET
15
B
MET
15
16
1_555
B
ASP
34
B
ASP
34
16
1_555
B
GLY
36
B
GLY
36
16
1_555
B
SER
76
B
SER
76
16
1_555
B
TYR
77
B
TYR
77
16
1_555
B
GLY
78
B
GLY
78
16
1_555
B
SER
79
B
SER
79
16
1_555
B
ILE
123
B
ILE
123
16
1_555
B
TYR
192
B
TYR
192
16
1_555
B
ASP
214
B
ASP
214
16
1_555
B
GLY
216
B
GLY
216
16
1_555
B
THR
217
B
THR
217
16
1_555
B
SER
218
B
SER
218
16
1_555
B
TYR
288
B
TYR
288
16
1_555
B
LEU
290
B
LEU
290
16
1_555
152
P 31 2 1