0.012725
0.000000
0.000000
0.000000
0.010674
0.000000
0.000000
0.000000
0.008054
0.00000
0.00000
0.00000
Galburt, E.A.
Pelletier, J.
Wilson, G.
Stoddard, B.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
78.585
93.684
124.165
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O S
78.133
DIMETHYL SULFOXIDE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
10
1249
1260
10.1016/S0969-2126(02)00835-3
12220496
Structure of a tRNA repair enzyme and molecular biology workhorse: T4 polynucleotide kinase.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-03-10
ADSC QUANTUM 4
Double-crystal Si(111)
MAD
M
x-ray
1
0.97873
1.0
5.0.2
ALS
0.97873
SYNCHROTRON
ALS BEAMLINE 5.0.2
35234.594
POLYNUCLEOTIDE KINASE
2.7.1.78
1
man
polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
78.133
DIMETHYL SULFOXIDE
1
syn
non-polymer
18.015
water
144
nat
water
PNK, Polynucleotide 5'-hydroxyl-kinase
no
yes
(MSE)KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSI(MSE)AHEERDEYKYTKKKEGIVTG(MSE)QFDTA
KSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRS(MSE)YKS
(MSE)REYLGLPVYNGTPGKPKAVIFDVDGTLAK(MSE)NGRGPYDLEKCDTDVINP(MSE)VVELSK(MSE)YAL
(MSE)GYQIVVVSGRESGTKEDPTKYYR(MSE)TRKWVEDIAGVPLV(MSE)QCQREQGDTRKDDVVKEEIFWKHIAPHF
DVKLAIDDRTQVVE(MSE)WRRIGVECWQVASGDF
MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG
VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPK
AVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPL
VMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
Escherichia
sample
10665
Enterobacteria phage T4
562
Escherichia coli
1
3.24
62.06
VAPOR DIFFUSION, HANGING DROP
6.5
PEG 4000, potassium chloride, MES, Tris, ATP, DTT, EDTA, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
1
0
2002-10-09
1
1
2008-04-28
1
2
2011-07-13
RCSB
Y
RCSB
2002-05-20
REL
ADP
ADENOSINE-5'-DIPHOSPHATE
DMS
DIMETHYL SULFOXIDE
HOH
water
ADP
900
2
ADP
ADP
900
A
DMS
800
3
DMS
DMS
800
A
HOH
500
4
HOH
HOH
500
A
HOH
501
4
HOH
HOH
501
A
HOH
502
4
HOH
HOH
502
A
HOH
503
4
HOH
HOH
503
A
HOH
504
4
HOH
HOH
504
A
HOH
505
4
HOH
HOH
505
A
HOH
506
4
HOH
HOH
506
A
HOH
507
4
HOH
HOH
507
A
HOH
508
4
HOH
HOH
508
A
HOH
509
4
HOH
HOH
509
A
HOH
510
4
HOH
HOH
510
A
HOH
511
4
HOH
HOH
511
A
HOH
512
4
HOH
HOH
512
A
HOH
513
4
HOH
HOH
513
A
HOH
514
4
HOH
HOH
514
A
HOH
515
4
HOH
HOH
515
A
HOH
516
4
HOH
HOH
516
A
HOH
517
4
HOH
HOH
517
A
HOH
518
4
HOH
HOH
518
A
HOH
519
4
HOH
HOH
519
A
HOH
520
4
HOH
HOH
520
A
HOH
521
4
HOH
HOH
521
A
HOH
522
4
HOH
HOH
522
A
HOH
523
4
HOH
HOH
523
A
HOH
524
4
HOH
HOH
524
A
HOH
525
4
HOH
HOH
525
A
HOH
526
4
HOH
HOH
526
A
HOH
527
4
HOH
HOH
527
A
HOH
528
4
HOH
HOH
528
A
HOH
529
4
HOH
HOH
529
A
HOH
530
4
HOH
HOH
530
A
HOH
531
4
HOH
HOH
531
A
HOH
532
4
HOH
HOH
532
A
HOH
533
4
HOH
HOH
533
A
HOH
534
4
HOH
HOH
534
A
HOH
535
4
HOH
HOH
535
A
HOH
536
4
HOH
HOH
536
A
HOH
537
4
HOH
HOH
537
A
HOH
538
4
HOH
HOH
538
A
HOH
539
4
HOH
HOH
539
A
HOH
540
4
HOH
HOH
540
A
HOH
541
4
HOH
HOH
541
A
HOH
542
4
HOH
HOH
542
A
HOH
543
4
HOH
HOH
543
A
HOH
544
4
HOH
HOH
544
A
HOH
545
4
HOH
HOH
545
A
HOH
546
4
HOH
HOH
546
A
HOH
547
4
HOH
HOH
547
A
HOH
548
4
HOH
HOH
548
A
HOH
549
4
HOH
HOH
549
A
HOH
550
4
HOH
HOH
550
A
HOH
551
4
HOH
HOH
551
A
HOH
552
4
HOH
HOH
552
A
HOH
553
4
HOH
HOH
553
A
HOH
554
4
HOH
HOH
554
A
HOH
555
4
HOH
HOH
555
A
HOH
556
4
HOH
HOH
556
A
HOH
557
4
HOH
HOH
557
A
HOH
558
4
HOH
HOH
558
A
HOH
559
4
HOH
HOH
559
A
HOH
560
4
HOH
HOH
560
A
HOH
561
4
HOH
HOH
561
A
HOH
562
4
HOH
HOH
562
A
HOH
563
4
HOH
HOH
563
A
HOH
564
4
HOH
HOH
564
A
HOH
565
4
HOH
HOH
565
A
HOH
566
4
HOH
HOH
566
A
HOH
567
4
HOH
HOH
567
A
HOH
568
4
HOH
HOH
568
A
HOH
569
4
HOH
HOH
569
A
HOH
570
4
HOH
HOH
570
A
HOH
571
4
HOH
HOH
571
A
HOH
572
4
HOH
HOH
572
A
HOH
573
4
HOH
HOH
573
A
HOH
574
4
HOH
HOH
574
A
HOH
575
4
HOH
HOH
575
A
HOH
576
4
HOH
HOH
576
A
HOH
577
4
HOH
HOH
577
A
HOH
578
4
HOH
HOH
578
A
HOH
579
4
HOH
HOH
579
A
HOH
580
4
HOH
HOH
580
A
HOH
581
4
HOH
HOH
581
A
HOH
582
4
HOH
HOH
582
A
HOH
583
4
HOH
HOH
583
A
HOH
584
4
HOH
HOH
584
A
HOH
585
4
HOH
HOH
585
A
HOH
586
4
HOH
HOH
586
A
HOH
587
4
HOH
HOH
587
A
HOH
588
4
HOH
HOH
588
A
HOH
589
4
HOH
HOH
589
A
HOH
590
4
HOH
HOH
590
A
HOH
591
4
HOH
HOH
591
A
HOH
592
4
HOH
HOH
592
A
HOH
593
4
HOH
HOH
593
A
HOH
594
4
HOH
HOH
594
A
HOH
595
4
HOH
HOH
595
A
HOH
596
4
HOH
HOH
596
A
HOH
597
4
HOH
HOH
597
A
HOH
598
4
HOH
HOH
598
A
HOH
599
4
HOH
HOH
599
A
HOH
600
4
HOH
HOH
600
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
MSE
1
n
1
MSE
1
A
LYS
2
n
2
LYS
2
A
LYS
3
n
3
LYS
3
A
ILE
4
n
4
ILE
4
A
ILE
5
n
5
ILE
5
A
LEU
6
n
6
LEU
6
A
THR
7
n
7
THR
7
A
ILE
8
n
8
ILE
8
A
GLY
9
n
9
GLY
9
A
CYS
10
n
10
CYS
10
A
PRO
11
n
11
PRO
11
A
GLY
12
n
12
GLY
12
A
SER
13
n
13
SER
13
A
GLY
14
n
14
GLY
14
A
LYS
15
n
15
LYS
15
A
SER
16
n
16
SER
16
A
THR
17
n
17
THR
17
A
TRP
18
n
18
TRP
18
A
ALA
19
n
19
ALA
19
A
ARG
20
n
20
ARG
20
A
GLU
21
n
21
GLU
21
A
PHE
22
n
22
PHE
22
A
ILE
23
n
23
ILE
23
A
ALA
24
n
24
ALA
24
A
LYS
25
n
25
LYS
25
A
ASN
26
n
26
ASN
26
A
PRO
27
n
27
PRO
27
A
GLY
28
n
28
GLY
28
A
PHE
29
n
29
PHE
29
A
TYR
30
n
30
TYR
30
A
ASN
31
n
31
ASN
31
A
ILE
32
n
32
ILE
32
A
ASN
33
n
33
ASN
33
A
ARG
34
n
34
ARG
34
A
ASP
35
n
35
ASP
35
A
ASP
36
n
36
ASP
36
A
TYR
37
n
37
TYR
37
A
ARG
38
n
38
ARG
38
A
GLN
39
n
39
GLN
39
A
SER
40
n
40
SER
40
A
ILE
41
n
41
ILE
41
A
MSE
42
n
42
MSE
42
A
ALA
43
n
43
ALA
43
A
HIS
44
n
44
HIS
44
A
GLU
45
n
45
GLU
45
A
GLU
46
n
46
GLU
46
A
ARG
47
n
47
ARG
47
A
ASP
48
n
48
ASP
48
A
n
49
49
A
n
50
50
A
n
51
51
A
TYR
52
n
52
TYR
52
A
THR
53
n
53
THR
53
A
LYS
54
n
54
LYS
54
A
LYS
55
n
55
LYS
55
A
LYS
56
n
56
LYS
56
A
GLU
57
n
57
GLU
57
A
GLY
58
n
58
GLY
58
A
ILE
59
n
59
ILE
59
A
VAL
60
n
60
VAL
60
A
THR
61
n
61
THR
61
A
GLY
62
n
62
GLY
62
A
MSE
63
n
63
MSE
63
A
GLN
64
n
64
GLN
64
A
PHE
65
n
65
PHE
65
A
ASP
66
n
66
ASP
66
A
THR
67
n
67
THR
67
A
ALA
68
n
68
ALA
68
A
LYS
69
n
69
LYS
69
A
SER
70
n
70
SER
70
A
ILE
71
n
71
ILE
71
A
LEU
72
n
72
LEU
72
A
TYR
73
n
73
TYR
73
A
GLY
74
n
74
GLY
74
A
GLY
75
n
75
GLY
75
A
ASP
76
n
76
ASP
76
A
SER
77
n
77
SER
77
A
VAL
78
n
78
VAL
78
A
LYS
79
n
79
LYS
79
A
GLY
80
n
80
GLY
80
A
VAL
81
n
81
VAL
81
A
ILE
82
n
82
ILE
82
A
ILE
83
n
83
ILE
83
A
SER
84
n
84
SER
84
A
ASP
85
n
85
ASP
85
A
THR
86
n
86
THR
86
A
ASN
87
n
87
ASN
87
A
LEU
88
n
88
LEU
88
A
ASN
89
n
89
ASN
89
A
PRO
90
n
90
PRO
90
A
GLU
91
n
91
GLU
91
A
ARG
92
n
92
ARG
92
A
ARG
93
n
93
ARG
93
A
LEU
94
n
94
LEU
94
A
ALA
95
n
95
ALA
95
A
TRP
96
n
96
TRP
96
A
GLU
97
n
97
GLU
97
A
THR
98
n
98
THR
98
A
PHE
99
n
99
PHE
99
A
ALA
100
n
100
ALA
100
A
LYS
101
n
101
LYS
101
A
GLU
102
n
102
GLU
102
A
TYR
103
n
103
TYR
103
A
GLY
104
n
104
GLY
104
A
TRP
105
n
105
TRP
105
A
LYS
106
n
106
LYS
106
A
VAL
107
n
107
VAL
107
A
GLU
108
n
108
GLU
108
A
HIS
109
n
109
HIS
109
A
LYS
110
n
110
LYS
110
A
VAL
111
n
111
VAL
111
A
PHE
112
n
112
PHE
112
A
ASP
113
n
113
ASP
113
A
VAL
114
n
114
VAL
114
A
PRO
115
n
115
PRO
115
A
TRP
116
n
116
TRP
116
A
THR
117
n
117
THR
117
A
GLU
118
n
118
GLU
118
A
LEU
119
n
119
LEU
119
A
VAL
120
n
120
VAL
120
A
LYS
121
n
121
LYS
121
A
ARG
122
n
122
ARG
122
A
ASN
123
n
123
ASN
123
A
SER
124
n
124
SER
124
A
LYS
125
n
125
LYS
125
A
ARG
126
n
126
ARG
126
A
GLY
127
n
127
GLY
127
A
THR
128
n
128
THR
128
A
LYS
129
n
129
LYS
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
PRO
132
n
132
PRO
132
A
ILE
133
n
133
ILE
133
A
ASP
134
n
134
ASP
134
A
VAL
135
n
135
VAL
135
A
LEU
136
n
136
LEU
136
A
ARG
137
n
137
ARG
137
A
SER
138
n
138
SER
138
A
MSE
139
n
139
MSE
139
A
TYR
140
n
140
TYR
140
A
LYS
141
n
141
LYS
141
A
SER
142
n
142
SER
142
A
MSE
143
n
143
MSE
143
A
ARG
144
n
144
ARG
144
A
GLU
145
n
145
GLU
145
A
TYR
146
n
146
TYR
146
A
LEU
147
n
147
LEU
147
A
GLY
148
n
148
GLY
148
A
LEU
149
n
149
LEU
149
A
PRO
150
n
150
PRO
150
A
VAL
151
n
151
VAL
151
A
TYR
152
n
152
TYR
152
A
ASN
153
n
153
ASN
153
A
GLY
154
n
154
GLY
154
A
THR
155
n
155
THR
155
A
PRO
156
n
156
PRO
156
A
GLY
157
n
157
GLY
157
A
LYS
158
n
158
LYS
158
A
PRO
159
n
159
PRO
159
A
LYS
160
n
160
LYS
160
A
ALA
161
n
161
ALA
161
A
VAL
162
n
162
VAL
162
A
ILE
163
n
163
ILE
163
A
PHE
164
n
164
PHE
164
A
ASP
165
n
165
ASP
165
A
VAL
166
n
166
VAL
166
A
ASP
167
n
167
ASP
167
A
GLY
168
n
168
GLY
168
A
THR
169
n
169
THR
169
A
LEU
170
n
170
LEU
170
A
ALA
171
n
171
ALA
171
A
LYS
172
n
172
LYS
172
A
MSE
173
n
173
MSE
173
A
ASN
174
n
174
ASN
174
A
GLY
175
n
175
GLY
175
A
ARG
176
n
176
ARG
176
A
GLY
177
n
177
GLY
177
A
PRO
178
n
178
PRO
178
A
TYR
179
n
179
TYR
179
A
ASP
180
n
180
ASP
180
A
LEU
181
n
181
LEU
181
A
GLU
182
n
182
GLU
182
A
LYS
183
n
183
LYS
183
A
CYS
184
n
184
CYS
184
A
ASP
185
n
185
ASP
185
A
THR
186
n
186
THR
186
A
ASP
187
n
187
ASP
187
A
VAL
188
n
188
VAL
188
A
ILE
189
n
189
ILE
189
A
ASN
190
n
190
ASN
190
A
PRO
191
n
191
PRO
191
A
MSE
192
n
192
MSE
192
A
VAL
193
n
193
VAL
193
A
VAL
194
n
194
VAL
194
A
GLU
195
n
195
GLU
195
A
LEU
196
n
196
LEU
196
A
SER
197
n
197
SER
197
A
LYS
198
n
198
LYS
198
A
MSE
199
n
199
MSE
199
A
TYR
200
n
200
TYR
200
A
ALA
201
n
201
ALA
201
A
LEU
202
n
202
LEU
202
A
MSE
203
n
203
MSE
203
A
GLY
204
n
204
GLY
204
A
TYR
205
n
205
TYR
205
A
GLN
206
n
206
GLN
206
A
ILE
207
n
207
ILE
207
A
VAL
208
n
208
VAL
208
A
VAL
209
n
209
VAL
209
A
VAL
210
n
210
VAL
210
A
SER
211
n
211
SER
211
A
GLY
212
n
212
GLY
212
A
ARG
213
n
213
ARG
213
A
GLU
214
n
214
GLU
214
A
SER
215
n
215
SER
215
A
GLY
216
n
216
GLY
216
A
THR
217
n
217
THR
217
A
LYS
218
n
218
LYS
218
A
GLU
219
n
219
GLU
219
A
ASP
220
n
220
ASP
220
A
PRO
221
n
221
PRO
221
A
THR
222
n
222
THR
222
A
LYS
223
n
223
LYS
223
A
TYR
224
n
224
TYR
224
A
TYR
225
n
225
TYR
225
A
ARG
226
n
226
ARG
226
A
MSE
227
n
227
MSE
227
A
THR
228
n
228
THR
228
A
ARG
229
n
229
ARG
229
A
LYS
230
n
230
LYS
230
A
TRP
231
n
231
TRP
231
A
VAL
232
n
232
VAL
232
A
GLU
233
n
233
GLU
233
A
ASP
234
n
234
ASP
234
A
ILE
235
n
235
ILE
235
A
ALA
236
n
236
ALA
236
A
GLY
237
n
237
GLY
237
A
VAL
238
n
238
VAL
238
A
PRO
239
n
239
PRO
239
A
LEU
240
n
240
LEU
240
A
VAL
241
n
241
VAL
241
A
MSE
242
n
242
MSE
242
A
GLN
243
n
243
GLN
243
A
CYS
244
n
244
CYS
244
A
GLN
245
n
245
GLN
245
A
ARG
246
n
246
ARG
246
A
GLU
247
n
247
GLU
247
A
GLN
248
n
248
GLN
248
A
GLY
249
n
249
GLY
249
A
ASP
250
n
250
ASP
250
A
THR
251
n
251
THR
251
A
ARG
252
n
252
ARG
252
A
LYS
253
n
253
LYS
253
A
ASP
254
n
254
ASP
254
A
ASP
255
n
255
ASP
255
A
VAL
256
n
256
VAL
256
A
VAL
257
n
257
VAL
257
A
LYS
258
n
258
LYS
258
A
GLU
259
n
259
GLU
259
A
GLU
260
n
260
GLU
260
A
ILE
261
n
261
ILE
261
A
PHE
262
n
262
PHE
262
A
TRP
263
n
263
TRP
263
A
LYS
264
n
264
LYS
264
A
HIS
265
n
265
HIS
265
A
ILE
266
n
266
ILE
266
A
ALA
267
n
267
ALA
267
A
PRO
268
n
268
PRO
268
A
HIS
269
n
269
HIS
269
A
PHE
270
n
270
PHE
270
A
ASP
271
n
271
ASP
271
A
VAL
272
n
272
VAL
272
A
LYS
273
n
273
LYS
273
A
LEU
274
n
274
LEU
274
A
ALA
275
n
275
ALA
275
A
ILE
276
n
276
ILE
276
A
ASP
277
n
277
ASP
277
A
ASP
278
n
278
ASP
278
A
ARG
279
n
279
ARG
279
A
THR
280
n
280
THR
280
A
GLN
281
n
281
GLN
281
A
VAL
282
n
282
VAL
282
A
VAL
283
n
283
VAL
283
A
GLU
284
n
284
GLU
284
A
MSE
285
n
285
MSE
285
A
TRP
286
n
286
TRP
286
A
ARG
287
n
287
ARG
287
A
ARG
288
n
288
ARG
288
A
ILE
289
n
289
ILE
289
A
GLY
290
n
290
GLY
290
A
VAL
291
n
291
VAL
291
A
GLU
292
n
292
GLU
292
A
CYS
293
n
293
CYS
293
A
TRP
294
n
294
TRP
294
A
GLN
295
n
295
GLN
295
A
VAL
296
n
296
VAL
296
A
ALA
297
n
297
ALA
297
A
SER
298
n
298
SER
298
A
GLY
299
n
299
GLY
299
A
ASP
300
n
300
ASP
300
A
PHE
301
n
301
PHE
301
A
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
11900
-69
52970
A
MSE
1
SELENOMETHIONINE
A
MSE
1
MET
A
MSE
42
SELENOMETHIONINE
A
MSE
42
MET
A
MSE
63
SELENOMETHIONINE
A
MSE
63
MET
A
MSE
139
SELENOMETHIONINE
A
MSE
139
MET
A
MSE
143
SELENOMETHIONINE
A
MSE
143
MET
A
MSE
173
SELENOMETHIONINE
A
MSE
173
MET
A
MSE
192
SELENOMETHIONINE
A
MSE
192
MET
A
MSE
199
SELENOMETHIONINE
A
MSE
199
MET
A
MSE
203
SELENOMETHIONINE
A
MSE
203
MET
A
MSE
227
SELENOMETHIONINE
A
MSE
227
MET
A
MSE
242
SELENOMETHIONINE
A
MSE
242
MET
A
MSE
285
SELENOMETHIONINE
A
MSE
285
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-x+1,-y,z
crystal symmetry operation
78.5850000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_656
-x+1,y,-z+1
crystal symmetry operation
78.5850000000
0.0000000000
124.1650000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_556
x,-y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
124.1650000000
A
N
TYR
30
A
N
TYR
30
A
O
ILE
82
A
O
ILE
82
A
O
ILE
83
A
O
ILE
83
A
N
ILE
5
A
N
ILE
5
A
N
LEU
6
A
N
LEU
6
A
O
GLU
108
A
O
GLU
108
A
O
MSE
242
A
O
MSE
242
A
N
VAL
209
A
N
VAL
209
A
O
VAL
210
A
O
VAL
210
A
N
PHE
164
A
N
PHE
164
A
N
ILE
163
A
N
ILE
163
A
O
LEU
274
A
O
LEU
274
A
N
ALA
275
A
N
ALA
275
A
O
TRP
294
A
O
TRP
294
1
A
CG
ASP
48
A
CG
ASP
48
1
Y
1
A
OD1
ASP
48
A
OD1
ASP
48
1
Y
1
A
OD2
ASP
48
A
OD2
ASP
48
1
Y
1
A
CG
TYR
52
A
CG
TYR
52
1
Y
1
A
CD1
TYR
52
A
CD1
TYR
52
1
Y
1
A
CD2
TYR
52
A
CD2
TYR
52
1
Y
1
A
CE1
TYR
52
A
CE1
TYR
52
1
Y
1
A
CE2
TYR
52
A
CE2
TYR
52
1
Y
1
A
CZ
TYR
52
A
CZ
TYR
52
1
Y
1
A
OH
TYR
52
A
OH
TYR
52
1
Y
1
A
CG
LYS
54
A
CG
LYS
54
1
Y
1
A
CD
LYS
54
A
CD
LYS
54
1
Y
1
A
CE
LYS
54
A
CE
LYS
54
1
Y
1
A
NZ
LYS
54
A
NZ
LYS
54
1
Y
1
A
CG
LYS
55
A
CG
LYS
55
1
Y
1
A
CD
LYS
55
A
CD
LYS
55
1
Y
1
A
CE
LYS
55
A
CE
LYS
55
1
Y
1
A
NZ
LYS
55
A
NZ
LYS
55
1
Y
1
A
CG
ASP
76
A
CG
ASP
76
1
Y
1
A
OD1
ASP
76
A
OD1
ASP
76
1
Y
1
A
OD2
ASP
76
A
OD2
ASP
76
1
Y
1
A
CG
GLU
91
A
CG
GLU
91
1
Y
1
A
CD
GLU
91
A
CD
GLU
91
1
Y
1
A
OE1
GLU
91
A
OE1
GLU
91
1
Y
1
A
OE2
GLU
91
A
OE2
GLU
91
1
Y
1
A
CG
LYS
101
A
CG
LYS
101
1
Y
1
A
CD
LYS
101
A
CD
LYS
101
1
Y
1
A
CE
LYS
101
A
CE
LYS
101
1
Y
1
A
NZ
LYS
101
A
NZ
LYS
101
1
Y
1
A
CE
LYS
172
A
CE
LYS
172
1
Y
1
A
NZ
LYS
172
A
NZ
LYS
172
1
Y
1
A
CG
ASN
174
A
CG
ASN
174
1
Y
1
A
OD1
ASN
174
A
OD1
ASN
174
1
Y
1
A
ND2
ASN
174
A
ND2
ASN
174
1
Y
1
A
CG
TYR
179
A
CG
TYR
179
1
Y
1
A
CD1
TYR
179
A
CD1
TYR
179
1
Y
1
A
CD2
TYR
179
A
CD2
TYR
179
1
Y
1
A
CE1
TYR
179
A
CE1
TYR
179
1
Y
1
A
CE2
TYR
179
A
CE2
TYR
179
1
Y
1
A
CZ
TYR
179
A
CZ
TYR
179
1
Y
1
A
OH
TYR
179
A
OH
TYR
179
1
Y
1
A
CG
GLU
182
A
CG
GLU
182
1
Y
1
A
CD
GLU
182
A
CD
GLU
182
1
Y
1
A
OE1
GLU
182
A
OE1
GLU
182
1
Y
1
A
OE2
GLU
182
A
OE2
GLU
182
1
Y
1
A
CG
GLU
219
A
CG
GLU
219
1
Y
1
A
CD
GLU
219
A
CD
GLU
219
1
Y
1
A
OE1
GLU
219
A
OE1
GLU
219
1
Y
1
A
OE2
GLU
219
A
OE2
GLU
219
1
Y
1
A
CG
LYS
264
A
CG
LYS
264
1
Y
1
A
CD
LYS
264
A
CD
LYS
264
1
Y
1
A
CE
LYS
264
A
CE
LYS
264
1
Y
1
A
NZ
LYS
264
A
NZ
LYS
264
1
Y
1
A
GLU
49
A
GLU
49
1
Y
1
A
TYR
50
A
TYR
50
1
Y
1
A
LYS
51
A
LYS
51
1
Y
1
A
A
C
N
ARG
ASP
34
35
1.74
B
1
A
A
C
N
ASP
ASP
35
36
1.72
B
1
A
LEU
72
-58.56
0.25
1
A
SER
84
-79.08
39.55
1
A
ASN
153
-144.19
26.60
1
A
VAL
166
-100.88
-71.65
1
A
THR
169
-107.18
-70.90
1
A
LYS
172
-104.70
-106.64
1
A
MSE
173
173.46
114.20
1
A
ARG
176
-119.48
-92.66
1
A
TYR
179
86.29
8.52
1
A
ASP
180
-114.33
70.74
1
A
PRO
221
-56.42
-9.06
1
A
ASP
255
-41.26
-70.88
1
A
ILE
266
-105.91
-60.00
0.2610000
0.2360000
0.2380000
0.2380000
2.33
50.0
2735
37037
37037
7.00
RANDOM
1
THROUGHOUT
0
SAD
Engh & Huber
0.30
2.33
50.0
144
2524
31
0
2349
30.0
2.30
50.00
1LTQ
38288
38288
0
0
0.0730000
1
12.8
5.0
99.1
0.2880000
2.30
2.38
5.7
1
97.7
data collection
HKL-2000
data scaling
SCALEPACK
refinement
CNS
data reduction
HKL-2000
phasing
CNS
Polynucleotide kinase, Adenosine-5'-diphosphate, Dimethyl sulfoxide
CRYSTAL STRUCTURE OF T4 POLYNUCLEOTIDE KINASE
1
N
N
2
N
N
3
N
N
4
N
N
A
GLY
14
A
GLY
14
HELX_P
A
ASN
26
A
ASN
26
1
1
13
A
ASN
33
A
ASN
33
HELX_P
A
MSE
42
A
MSE
42
1
2
10
A
THR
53
A
THR
53
HELX_P
A
LEU
72
A
LEU
72
1
3
20
A
ASN
89
A
ASN
89
HELX_P
A
TYR
103
A
TYR
103
1
4
15
A
PRO
115
A
PRO
115
HELX_P
A
ARG
126
A
ARG
126
1
5
12
A
GLY
127
A
GLY
127
HELX_P
A
ALA
130
A
ALA
130
5
6
4
A
PRO
132
A
PRO
132
HELX_P
A
GLY
148
A
GLY
148
1
7
17
A
ASP
180
A
ASP
180
HELX_P
A
ASP
187
A
ASP
187
5
8
8
A
ASN
190
A
ASN
190
HELX_P
A
MSE
203
A
MSE
203
1
9
14
A
THR
222
A
THR
222
HELX_P
A
ILE
235
A
ILE
235
1
10
14
A
LYS
253
A
LYS
253
HELX_P
A
ILE
266
A
ILE
266
1
11
14
A
ARG
279
A
ARG
279
HELX_P
A
ILE
289
A
ILE
289
1
12
11
covale
1.329
A
MSE
1
A
C
MSE
1
1_555
A
LYS
2
A
N
LYS
2
1_555
covale
1.331
A
ILE
41
A
C
ILE
41
1_555
A
MSE
42
A
N
MSE
42
1_555
covale
1.329
A
MSE
42
A
C
MSE
42
1_555
A
ALA
43
A
N
ALA
43
1_555
covale
1.333
A
GLY
62
A
C
GLY
62
1_555
A
MSE
63
A
N
MSE
63
1_555
covale
1.330
A
MSE
63
A
C
MSE
63
1_555
A
GLN
64
A
N
GLN
64
1_555
covale
1.327
A
SER
138
A
C
SER
138
1_555
A
MSE
139
A
N
MSE
139
1_555
covale
1.328
A
MSE
139
A
C
MSE
139
1_555
A
TYR
140
A
N
TYR
140
1_555
covale
1.331
A
SER
142
A
C
SER
142
1_555
A
MSE
143
A
N
MSE
143
1_555
covale
1.332
A
MSE
143
A
C
MSE
143
1_555
A
ARG
144
A
N
ARG
144
1_555
covale
1.333
A
LYS
172
A
C
LYS
172
1_555
A
MSE
173
A
N
MSE
173
1_555
covale
1.333
A
MSE
173
A
C
MSE
173
1_555
A
ASN
174
A
N
ASN
174
1_555
covale
1.328
A
PRO
191
A
C
PRO
191
1_555
A
MSE
192
A
N
MSE
192
1_555
covale
1.335
A
MSE
192
A
C
MSE
192
1_555
A
VAL
193
A
N
VAL
193
1_555
covale
1.334
A
LYS
198
A
C
LYS
198
1_555
A
MSE
199
A
N
MSE
199
1_555
covale
1.331
A
MSE
199
A
C
MSE
199
1_555
A
TYR
200
A
N
TYR
200
1_555
covale
1.333
A
LEU
202
A
C
LEU
202
1_555
A
MSE
203
A
N
MSE
203
1_555
covale
1.329
A
MSE
203
A
C
MSE
203
1_555
A
GLY
204
A
N
GLY
204
1_555
covale
1.335
A
ARG
226
A
C
ARG
226
1_555
A
MSE
227
A
N
MSE
227
1_555
covale
1.328
A
MSE
227
A
C
MSE
227
1_555
A
THR
228
A
N
THR
228
1_555
covale
1.325
A
VAL
241
A
C
VAL
241
1_555
A
MSE
242
A
N
MSE
242
1_555
covale
1.329
A
MSE
242
A
C
MSE
242
1_555
A
GLN
243
A
N
GLN
243
1_555
covale
1.334
A
GLU
284
A
C
GLU
284
1_555
A
MSE
285
A
N
MSE
285
1_555
covale
1.331
A
MSE
285
A
C
MSE
285
1_555
A
TRP
286
A
N
TRP
286
1_555
TRANSFERASE
KINASE, PHOSPHATASE, ALPHA/BETA, P-LOOP, TRANSFERASE
KIPN_BPT4
UNP
1
1
P06855
MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG
VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPK
AVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPL
VMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGDF
1
301
1LTQ
1
301
P06855
A
1
1
301
1
MET
MODIFIED RESIDUE
MSE
1
1LTQ
A
P06855
UNP
1
1
1
MET
MODIFIED RESIDUE
MSE
42
1LTQ
A
P06855
UNP
42
42
1
MET
MODIFIED RESIDUE
MSE
63
1LTQ
A
P06855
UNP
63
63
1
MET
MODIFIED RESIDUE
MSE
139
1LTQ
A
P06855
UNP
139
139
1
MET
MODIFIED RESIDUE
MSE
143
1LTQ
A
P06855
UNP
143
143
1
MET
MODIFIED RESIDUE
MSE
173
1LTQ
A
P06855
UNP
173
173
1
MET
MODIFIED RESIDUE
MSE
192
1LTQ
A
P06855
UNP
192
192
1
MET
MODIFIED RESIDUE
MSE
199
1LTQ
A
P06855
UNP
199
199
1
MET
MODIFIED RESIDUE
MSE
203
1LTQ
A
P06855
UNP
203
203
1
MET
MODIFIED RESIDUE
MSE
227
1LTQ
A
P06855
UNP
227
227
1
MET
MODIFIED RESIDUE
MSE
242
1LTQ
A
P06855
UNP
242
242
1
MET
MODIFIED RESIDUE
MSE
285
1LTQ
A
P06855
UNP
285
285
4
5
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
PHE
29
A
PHE
29
A
ILE
32
A
ILE
32
A
GLY
80
A
GLY
80
A
ILE
83
A
ILE
83
A
LYS
3
A
LYS
3
A
ILE
8
A
ILE
8
A
LYS
106
A
LYS
106
A
VAL
111
A
VAL
111
A
MSE
242
A
MSE
242
A
GLN
245
A
GLN
245
A
GLN
206
A
GLN
206
A
SER
211
A
SER
211
A
LYS
160
A
LYS
160
A
ASP
165
A
ASP
165
A
ASP
271
A
ASP
271
A
ASP
277
A
ASP
277
A
CYS
293
A
CYS
293
A
GLN
295
A
GLN
295
BINDING SITE FOR RESIDUE ADP A 900
Software
9
BINDING SITE FOR RESIDUE DMS A 800
Software
4
A
PRO
11
A
PRO
11
9
1_555
A
GLY
12
A
GLY
12
9
1_555
A
SER
13
A
SER
13
9
1_555
A
GLY
14
A
GLY
14
9
1_555
A
LYS
15
A
LYS
15
9
1_555
A
SER
16
A
SER
16
9
1_555
A
THR
17
A
THR
17
9
1_555
A
ARG
122
A
ARG
122
9
1_555
A
ARG
126
A
ARG
126
9
1_555
A
GLU
108
A
GLU
108
4
1_555
A
HIS
109
A
HIS
109
4
1_555
A
ARG
226
A
ARG
226
4
8_455
A
HOH
627
D
HOH
4
1_555
23
I 2 2 2