1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Valle, M.
Sengupta, J.
Swami, N.K.
Grassucci, R.A.
Burkhardt, N.
Nierhaus, K.H.
Agrawal, R.K.
Frank, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
n
PSEUDOURIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
N
C
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
S
C
N
120
R
C
N
121
N
O
N
122
S
C
N
123
R
C
N
124
N
O
N
125
N
O
N
126
N
C
N
127
N
O
N
128
N
P
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
P
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
C
N
151
R
C
N
152
N
O
N
153
S
C
N
154
N
O
N
155
R
C
N
156
N
O
N
157
R
C
N
158
N
N
N
159
N
C
N
160
N
O
N
161
N
N
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
21
3557
3567
10.1093/emboj/cdf326
12093756
Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
2002
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
285
1245
1256
Crystal structure of intact elongation factor EF-Tu from E.coli in GDP conformation at 2.05A resolution
1999
US
Science
SCIEAS
0038
0036-8075
270
1464
1472
Crystal structure of the ternary complex of the Phe-tRNAPhe, EF-Tu, and a GTP analog
1995
UK
Nature
NATUAS
0006
0028-0836
389
403
406
Visualization of elongation factor Tu on E.coli ribosome
1997
UK
Structure
STRUE6
2005
0969-2126
1
35
50
The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation
1993
UK
Structure
STRUE6
2005
0969-2126
4
1141
1151
Helix unwinding in the effector region of elongation factor EF-Tu-GDP
1996
10.2210/pdb1lu3/pdb
pdb_00001lu3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
METHOD--Manual
OTHER
1TTT
1
1TTT
PDB
experimental model
2.69
SPIDER package
1LU3
TMV
reference based alignment
7985
16.8
POINT
Hepes-KOH buffer at pH 7.5
Hepes-KOH buffer at pH 7.5
7.5
CTF correction of 3D-maps
E.coli 70S ribosome-Ternary complex-GDP-Kirromycin
E.coli 70S ribosome-Ternary complex-GDP-Kirromycin
0
RIBOSOME
PARTICLE
1
1
SINGLE PARTICLE
10
KODAK SO-163 FILM
100
52000
2001-03-01
LAB6
FLOOD BEAM
FEI/PHILIPS EM420
BRIGHT FIELD
2
3500
1000
50000
1
93
0
0
1LU3
C1
MODEL FITTING
Manual
O
RECONSTRUCTION
1
SPIDER
NO
NO
NO
YES
ETHANE
Rapid-freezing in liquid ethane
1LU3
HOMEMADE PLUNGER
5466.326
PHENYLALANINE TRANSFER RNA
anticodon loop region
1
nat
polymer
no
yes
GCCAGACUGAAGA(PSU)CUG
GCCAGACUGAAGAUCUG
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
sample
4932
Saccharomyces cerevisiae
18.124
1
19
A
28
A
42
-1.690
A_C28:G42_A
1
-5.261
-0.155
-1.123
-0.336
-11.369
1
20
A
29
A
41
-9.272
A_A29:U41_A
2
9.170
0.424
-0.944
-0.356
-18.822
1
19
A
30
A
40
-9.858
A_G30:C40_A
3
-5.476
-0.328
-0.522
-0.183
-11.199
1
21
A
31
A
39
-10.542
A_A31:PSU39_A
4
-2.069
1.382
-0.303
-0.235
3.450
36.305
A
A
28
29
22.156
A
A
42
41
4.300
13.459
-0.304
-1.568
AA_C28A29:U41G42_AA
1
-4.602
7.575
33.490
-4.843
-0.308
3.007
26.832
A
A
29
30
10.737
A
A
41
40
3.468
4.955
-0.096
-2.220
AA_A29G30:C40U41_AA
2
0.074
-0.161
26.379
-6.060
0.225
2.866
40.457
A
A
30
31
2.757
A
A
40
39
2.922
1.905
0.315
-1.474
AA_G30A31:PSU39C40_AA
3
2.339
-3.385
40.349
-2.320
-0.223
em_image_scans
em_software
chem_comp_atom
chem_comp_bond
database_2
em_3d_fitting_list
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-06-26
1
1
2008-04-28
1
2
2011-07-13
1
3
2018-07-18
1
4
2024-02-14
_em_software.image_processing_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_em_3d_fitting_list.accession_code
_em_3d_fitting_list.initial_refinement_model_id
_em_3d_fitting_list.source_name
_em_3d_fitting_list.type
_struct_conn.pdbx_leaving_atom_flag
1ls2 is Fitting of EF-Tu and tRNA in the low resolution cryo-EM map of an EF-Tu ternary complex (GDP and Kirromycin) bound to E.coli 70S ribosome
1efc is Intact Elongation Factor from E.coli
1ttt is Phe-tRNA, Elongation Factor EF-Tu: GDPNP Ternary Complex
1exm is Crystal Structure of Thermus Thermophilus Elongation Factor Tu(EF-Tu) in complex with the GTP Analog GPPNHP
RCSB
Y
RCSB
2002-05-21
REL
1TTT
PDB
experimental model
G
26
n
1
G
26
A
C
27
n
2
C
27
A
C
28
n
3
C
28
A
A
29
n
4
A
29
A
G
30
n
5
G
30
A
A
31
n
6
A
31
A
C
32
n
7
C
32
A
U
33
n
8
U
33
A
G
34
n
9
G
34
A
A
35
n
10
A
35
A
A
36
n
11
A
36
A
G
37
n
12
G
37
A
A
38
n
13
A
38
A
PSU
39
n
14
PSU
39
A
C
40
n
15
C
40
A
U
41
n
16
U
41
A
G
42
n
17
G
42
A
author_defined_assembly
1
monomeric
A
PSU
39
A
14
GEOMETRY
A
PSU
39
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
14
U
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-10.21
1.50
119.60
109.39
A
A
A
OP1
P
OP2
G
G
G
26
26
26
N
1
8.35
0.50
111.90
120.25
A
A
A
C2
N3
C4
G
G
G
26
26
26
N
1
-9.51
0.50
128.60
119.09
A
A
A
N3
C4
C5
G
G
G
26
26
26
N
1
3.59
0.50
111.50
115.09
A
A
A
C5
C6
N1
G
G
G
26
26
26
N
1
-9.63
0.40
110.80
101.17
A
A
A
C4
C5
N7
G
G
G
26
26
26
N
1
5.19
0.50
104.30
109.49
A
A
A
C5
N7
C8
G
G
G
26
26
26
N
1
-3.54
0.50
113.10
109.56
A
A
A
N7
C8
N9
G
G
G
26
26
26
N
1
5.92
0.40
105.40
111.32
A
A
A
N9
C4
C5
G
G
G
26
26
26
N
1
7.88
0.60
130.40
138.28
A
A
A
C6
C5
N7
G
G
G
26
26
26
N
1
4.33
0.60
119.90
124.23
A
A
A
N1
C6
O6
G
G
G
26
26
26
N
1
-7.92
0.60
128.60
120.68
A
A
A
C5
C6
O6
G
G
G
26
26
26
N
1
-10.38
1.50
119.60
109.22
A
A
A
OP1
P
OP2
C
C
C
27
27
27
N
1
-4.20
0.40
121.90
117.70
A
A
A
N3
C4
C5
C
C
C
27
27
27
N
1
3.06
0.50
117.40
120.46
A
A
A
C4
C5
C6
C
C
C
27
27
27
N
1
-4.21
0.70
121.90
117.69
A
A
A
N3
C2
O2
C
C
C
27
27
27
N
1
5.02
0.70
118.00
123.02
A
A
A
N3
C4
N4
C
C
C
27
27
27
N
1
-10.12
1.50
119.60
109.48
A
A
A
OP1
P
OP2
C
C
C
28
28
28
N
1
-4.26
0.40
121.90
117.64
A
A
A
N3
C4
C5
C
C
C
28
28
28
N
1
3.04
0.50
117.40
120.44
A
A
A
C4
C5
C6
C
C
C
28
28
28
N
1
4.98
0.70
118.00
122.98
A
A
A
N3
C4
N4
C
C
C
28
28
28
N
1
-10.25
1.50
119.60
109.35
A
A
A
OP1
P
OP2
A
A
A
29
29
29
N
1
-6.67
0.50
129.30
122.63
A
A
A
N1
C2
N3
A
A
A
29
29
29
N
1
7.25
0.50
110.60
117.85
A
A
A
C2
N3
C4
A
A
A
29
29
29
N
1
-6.94
0.70
126.80
119.86
A
A
A
N3
C4
C5
A
A
A
29
29
29
N
1
5.35
0.50
117.00
122.35
A
A
A
C4
C5
C6
A
A
A
29
29
29
N
1
-5.19
0.50
110.70
105.51
A
A
A
C4
C5
N7
A
A
A
29
29
29
N
1
5.98
0.50
103.90
109.88
A
A
A
C5
N7
C8
A
A
A
29
29
29
N
1
6.61
0.80
127.40
134.01
A
A
A
N3
C4
N9
A
A
A
29
29
29
N
1
4.39
0.60
118.60
122.99
A
A
A
N1
C6
N6
A
A
A
29
29
29
N
1
-10.13
1.50
119.60
109.47
A
A
A
OP1
P
OP2
G
G
G
30
30
30
N
1
8.43
0.50
111.90
120.33
A
A
A
C2
N3
C4
G
G
G
30
30
30
N
1
-9.68
0.50
128.60
118.92
A
A
A
N3
C4
C5
G
G
G
30
30
30
N
1
3.72
0.50
111.50
115.22
A
A
A
C5
C6
N1
G
G
G
30
30
30
N
1
-9.53
0.40
110.80
101.27
A
A
A
C4
C5
N7
G
G
G
30
30
30
N
1
5.12
0.50
104.30
109.42
A
A
A
C5
N7
C8
G
G
G
30
30
30
N
1
-3.50
0.50
113.10
109.60
A
A
A
N7
C8
N9
G
G
G
30
30
30
N
1
5.86
0.40
105.40
111.26
A
A
A
N9
C4
C5
G
G
G
30
30
30
N
1
3.83
0.60
126.00
129.83
A
A
A
N3
C4
N9
G
G
G
30
30
30
N
1
7.70
0.60
130.40
138.10
A
A
A
C6
C5
N7
G
G
G
30
30
30
N
1
4.42
0.60
119.90
124.32
A
A
A
N1
C6
O6
G
G
G
30
30
30
N
1
-8.14
0.60
128.60
120.46
A
A
A
C5
C6
O6
G
G
G
30
30
30
N
1
-10.10
1.50
119.60
109.50
A
A
A
OP1
P
OP2
A
A
A
31
31
31
N
1
-6.64
0.50
129.30
122.66
A
A
A
N1
C2
N3
A
A
A
31
31
31
N
1
7.23
0.50
110.60
117.83
A
A
A
C2
N3
C4
A
A
A
31
31
31
N
1
-6.92
0.70
126.80
119.88
A
A
A
N3
C4
C5
A
A
A
31
31
31
N
1
5.27
0.50
117.00
122.27
A
A
A
C4
C5
C6
A
A
A
31
31
31
N
1
-5.19
0.50
110.70
105.51
A
A
A
C4
C5
N7
A
A
A
31
31
31
N
1
6.04
0.50
103.90
109.94
A
A
A
C5
N7
C8
A
A
A
31
31
31
N
1
6.55
0.80
127.40
133.95
A
A
A
N3
C4
N9
A
A
A
31
31
31
N
1
4.24
0.60
118.60
122.84
A
A
A
N1
C6
N6
A
A
A
31
31
31
N
1
-10.05
1.50
119.60
109.55
A
A
A
OP1
P
OP2
C
C
C
32
32
32
N
1
-4.42
0.40
121.90
117.48
A
A
A
N3
C4
C5
C
C
C
32
32
32
N
1
3.26
0.50
117.40
120.66
A
A
A
C4
C5
C6
C
C
C
32
32
32
N
1
3.61
0.60
118.90
122.51
A
A
A
N1
C2
O2
C
C
C
32
32
32
N
1
4.90
0.70
118.00
122.90
A
A
A
N3
C4
N4
C
C
C
32
32
32
N
1
-10.20
1.50
119.60
109.40
A
A
A
OP1
P
OP2
U
U
U
33
33
33
N
1
3.80
0.60
114.90
118.70
A
A
A
N1
C2
N3
U
U
U
33
33
33
N
1
-4.87
0.60
127.00
122.13
A
A
A
C2
N3
C4
U
U
U
33
33
33
N
1
-6.45
0.60
125.90
119.45
A
A
A
C5
C4
O4
U
U
U
33
33
33
N
1
-10.14
1.50
119.60
109.46
A
A
A
OP1
P
OP2
G
G
G
34
34
34
N
1
8.41
0.50
111.90
120.31
A
A
A
C2
N3
C4
G
G
G
34
34
34
N
1
-9.65
0.50
128.60
118.95
A
A
A
N3
C4
C5
G
G
G
34
34
34
N
1
3.87
0.50
111.50
115.37
A
A
A
C5
C6
N1
G
G
G
34
34
34
N
1
-9.61
0.40
110.80
101.19
A
A
A
C4
C5
N7
G
G
G
34
34
34
N
1
5.17
0.50
104.30
109.47
A
A
A
C5
N7
C8
G
G
G
34
34
34
N
1
-3.47
0.50
113.10
109.63
A
A
A
N7
C8
N9
G
G
G
34
34
34
N
1
5.96
0.40
105.40
111.36
A
A
A
N9
C4
C5
G
G
G
34
34
34
N
1
3.69
0.60
126.00
129.69
A
A
A
N3
C4
N9
G
G
G
34
34
34
N
1
7.77
0.60
130.40
138.17
A
A
A
C6
C5
N7
G
G
G
34
34
34
N
1
4.42
0.60
119.90
124.32
A
A
A
N1
C6
O6
G
G
G
34
34
34
N
1
-8.30
0.60
128.60
120.30
A
A
A
C5
C6
O6
G
G
G
34
34
34
N
1
-10.20
1.50
119.60
109.40
A
A
A
OP1
P
OP2
A
A
A
35
35
35
N
1
-6.66
0.50
129.30
122.64
A
A
A
N1
C2
N3
A
A
A
35
35
35
N
1
7.42
0.50
110.60
118.02
A
A
A
C2
N3
C4
A
A
A
35
35
35
N
1
-7.22
0.70
126.80
119.58
A
A
A
N3
C4
C5
A
A
A
35
35
35
N
1
5.50
0.50
117.00
122.50
A
A
A
C4
C5
C6
A
A
A
35
35
35
N
1
-5.29
0.50
110.70
105.41
A
A
A
C4
C5
N7
A
A
A
35
35
35
N
1
6.15
0.50
103.90
110.05
A
A
A
C5
N7
C8
A
A
A
35
35
35
N
1
6.75
0.80
127.40
134.15
A
A
A
N3
C4
N9
A
A
A
35
35
35
N
1
4.26
0.60
118.60
122.86
A
A
A
N1
C6
N6
A
A
A
35
35
35
N
1
-10.43
1.50
119.60
109.17
A
A
A
OP1
P
OP2
A
A
A
36
36
36
N
1
-6.73
0.50
129.30
122.57
A
A
A
N1
C2
N3
A
A
A
36
36
36
N
1
7.21
0.50
110.60
117.81
A
A
A
C2
N3
C4
A
A
A
36
36
36
N
1
-6.79
0.70
126.80
120.01
A
A
A
N3
C4
C5
A
A
A
36
36
36
N
1
5.21
0.50
117.00
122.21
A
A
A
C4
C5
C6
A
A
A
36
36
36
N
1
-5.25
0.50
110.70
105.45
A
A
A
C4
C5
N7
A
A
A
36
36
36
N
1
6.10
0.50
103.90
110.00
A
A
A
C5
N7
C8
A
A
A
36
36
36
N
1
6.35
0.80
127.40
133.75
A
A
A
N3
C4
N9
A
A
A
36
36
36
N
1
4.11
0.60
118.60
122.71
A
A
A
N1
C6
N6
A
A
A
36
36
36
N
1
-10.36
1.50
119.60
109.24
A
A
A
OP1
P
OP2
G
G
G
37
37
37
N
1
8.40
0.50
111.90
120.30
A
A
A
C2
N3
C4
G
G
G
37
37
37
N
1
-9.31
0.50
128.60
119.29
A
A
A
N3
C4
C5
G
G
G
37
37
37
N
1
3.73
0.50
111.50
115.23
A
A
A
C5
C6
N1
G
G
G
37
37
37
N
1
-9.67
0.40
110.80
101.13
A
A
A
C4
C5
N7
G
G
G
37
37
37
N
1
5.27
0.50
104.30
109.57
A
A
A
C5
N7
C8
G
G
G
37
37
37
N
1
-3.58
0.50
113.10
109.52
A
A
A
N7
C8
N9
G
G
G
37
37
37
N
1
5.93
0.40
105.40
111.33
A
A
A
N9
C4
C5
G
G
G
37
37
37
N
1
8.15
0.60
130.40
138.55
A
A
A
C6
C5
N7
G
G
G
37
37
37
N
1
3.93
0.60
119.90
123.83
A
A
A
N1
C6
O6
G
G
G
37
37
37
N
1
-7.66
0.60
128.60
120.94
A
A
A
C5
C6
O6
G
G
G
37
37
37
N
1
-10.17
1.50
119.60
109.43
A
A
A
OP1
P
OP2
A
A
A
38
38
38
N
1
-6.52
0.50
129.30
122.78
A
A
A
N1
C2
N3
A
A
A
38
38
38
N
1
7.21
0.50
110.60
117.81
A
A
A
C2
N3
C4
A
A
A
38
38
38
N
1
-6.93
0.70
126.80
119.87
A
A
A
N3
C4
C5
A
A
A
38
38
38
N
1
5.33
0.50
117.00
122.33
A
A
A
C4
C5
C6
A
A
A
38
38
38
N
1
-5.32
0.50
110.70
105.38
A
A
A
C4
C5
N7
A
A
A
38
38
38
N
1
6.08
0.50
103.90
109.98
A
A
A
C5
N7
C8
A
A
A
38
38
38
N
1
6.42
0.80
127.40
133.82
A
A
A
N3
C4
N9
A
A
A
38
38
38
N
1
4.11
0.60
118.60
122.71
A
A
A
N1
C6
N6
A
A
A
38
38
38
N
1
-10.32
1.50
119.60
109.28
A
A
A
OP1
P
OP2
C
C
C
40
40
40
N
1
-4.15
0.40
121.90
117.75
A
A
A
N3
C4
C5
C
C
C
40
40
40
N
1
3.63
0.60
118.90
122.53
A
A
A
N1
C2
O2
C
C
C
40
40
40
N
1
-4.23
0.70
121.90
117.67
A
A
A
N3
C2
O2
C
C
C
40
40
40
N
1
5.04
0.70
118.00
123.04
A
A
A
N3
C4
N4
C
C
C
40
40
40
N
1
-10.22
1.50
119.60
109.38
A
A
A
OP1
P
OP2
U
U
U
41
41
41
N
1
3.84
0.60
114.90
118.74
A
A
A
N1
C2
N3
U
U
U
41
41
41
N
1
-5.05
0.60
127.00
121.95
A
A
A
C2
N3
C4
U
U
U
41
41
41
N
1
-6.74
0.60
125.90
119.16
A
A
A
C5
C4
O4
U
U
U
41
41
41
N
1
-10.21
1.50
119.60
109.39
A
A
A
OP1
P
OP2
G
G
G
42
42
42
N
1
8.20
0.50
111.90
120.10
A
A
A
C2
N3
C4
G
G
G
42
42
42
N
1
-9.44
0.50
128.60
119.16
A
A
A
N3
C4
C5
G
G
G
42
42
42
N
1
3.60
0.50
111.50
115.10
A
A
A
C5
C6
N1
G
G
G
42
42
42
N
1
-9.67
0.40
110.80
101.13
A
A
A
C4
C5
N7
G
G
G
42
42
42
N
1
5.20
0.50
104.30
109.50
A
A
A
C5
N7
C8
G
G
G
42
42
42
N
1
-3.54
0.50
113.10
109.56
A
A
A
N7
C8
N9
G
G
G
42
42
42
N
1
5.96
0.40
105.40
111.36
A
A
A
N9
C4
C5
G
G
G
42
42
42
N
1
7.91
0.60
130.40
138.31
A
A
A
C6
C5
N7
G
G
G
42
42
42
N
1
4.29
0.60
119.90
124.19
A
A
A
N1
C6
O6
G
G
G
42
42
42
N
1
-7.89
0.60
128.60
120.71
A
A
A
C5
C6
O6
G
G
G
42
42
42
N
1
A
A
N3
C4
G
G
26
26
0.090
0.007
1.350
1.440
N
1
A
A
C4
C5
G
G
26
26
-0.047
0.007
1.379
1.332
N
1
A
A
C5
N7
G
G
26
26
0.049
0.006
1.388
1.437
N
1
A
A
N7
C8
G
G
26
26
-0.043
0.006
1.305
1.262
N
1
A
A
C8
N9
G
G
26
26
-0.071
0.007
1.374
1.303
N
1
A
A
N9
C4
G
G
26
26
-0.066
0.008
1.375
1.309
N
1
A
A
C2
N3
C
C
27
27
0.092
0.008
1.353
1.445
N
1
A
A
N3
C4
C
C
27
27
-0.064
0.007
1.335
1.271
N
1
A
A
C4
C5
C
C
27
27
0.050
0.008
1.425
1.475
N
1
A
A
C2
N3
C
C
28
28
0.090
0.008
1.353
1.443
N
1
A
A
N3
C4
C
C
28
28
-0.065
0.007
1.335
1.270
N
1
A
A
C4
C5
C
C
28
28
0.050
0.008
1.425
1.475
N
1
A
A
C5
N7
A
A
29
29
-0.048
0.006
1.388
1.340
N
1
A
A
N7
C8
A
A
29
29
-0.044
0.007
1.311
1.267
N
1
A
A
C8
N9
A
A
29
29
-0.067
0.008
1.373
1.306
N
1
A
A
N3
C4
G
G
30
30
0.090
0.007
1.350
1.440
N
1
A
A
C4
C5
G
G
30
30
-0.047
0.007
1.379
1.332
N
1
A
A
C5
N7
G
G
30
30
0.048
0.006
1.388
1.436
N
1
A
A
N7
C8
G
G
30
30
-0.043
0.006
1.305
1.262
N
1
A
A
C8
N9
G
G
30
30
-0.071
0.007
1.374
1.303
N
1
A
A
N9
C4
G
G
30
30
-0.066
0.008
1.375
1.309
N
1
A
A
C5
N7
A
A
31
31
-0.048
0.006
1.388
1.340
N
1
A
A
N7
C8
A
A
31
31
-0.043
0.007
1.311
1.268
N
1
A
A
C8
N9
A
A
31
31
-0.065
0.008
1.373
1.308
N
1
A
A
C2
N3
C
C
32
32
0.092
0.008
1.353
1.445
N
1
A
A
N3
C4
C
C
32
32
-0.065
0.007
1.335
1.270
N
1
A
A
C4
C5
C
C
32
32
0.050
0.008
1.425
1.475
N
1
A
A
N3
C4
G
G
34
34
0.091
0.007
1.350
1.441
N
1
A
A
C4
C5
G
G
34
34
-0.048
0.007
1.379
1.331
N
1
A
A
C5
N7
G
G
34
34
0.047
0.006
1.388
1.435
N
1
A
A
N7
C8
G
G
34
34
-0.043
0.006
1.305
1.262
N
1
A
A
C8
N9
G
G
34
34
-0.072
0.007
1.374
1.302
N
1
A
A
N9
C4
G
G
34
34
-0.065
0.008
1.375
1.310
N
1
A
A
C5
N7
A
A
35
35
-0.050
0.006
1.388
1.338
N
1
A
A
N7
C8
A
A
35
35
-0.044
0.007
1.311
1.267
N
1
A
A
C8
N9
A
A
35
35
-0.066
0.008
1.373
1.307
N
1
A
A
C5
N7
A
A
36
36
-0.050
0.006
1.388
1.338
N
1
A
A
N7
C8
A
A
36
36
-0.043
0.007
1.311
1.268
N
1
A
A
C8
N9
A
A
36
36
-0.065
0.008
1.373
1.308
N
1
A
A
C2
N3
G
G
37
37
-0.050
0.008
1.323
1.273
N
1
A
A
N3
C4
G
G
37
37
0.089
0.007
1.350
1.439
N
1
A
A
C4
C5
G
G
37
37
-0.047
0.007
1.379
1.332
N
1
A
A
C5
N7
G
G
37
37
0.048
0.006
1.388
1.436
N
1
A
A
N7
C8
G
G
37
37
-0.044
0.006
1.305
1.261
N
1
A
A
C8
N9
G
G
37
37
-0.072
0.007
1.374
1.302
N
1
A
A
N9
C4
G
G
37
37
-0.065
0.008
1.375
1.310
N
1
A
A
C5
N7
A
A
38
38
-0.048
0.006
1.388
1.340
N
1
A
A
N7
C8
A
A
38
38
-0.042
0.007
1.311
1.269
N
1
A
A
C8
N9
A
A
38
38
-0.065
0.008
1.373
1.308
N
1
A
A
C2
N3
C
C
40
40
0.092
0.008
1.353
1.445
N
1
A
A
N3
C4
C
C
40
40
-0.064
0.007
1.335
1.271
N
1
A
A
C4
C5
C
C
40
40
0.049
0.008
1.425
1.474
N
1
A
A
N3
C4
G
G
42
42
0.092
0.007
1.350
1.442
N
1
A
A
C4
C5
G
G
42
42
-0.047
0.007
1.379
1.332
N
1
A
A
C5
N7
G
G
42
42
0.049
0.006
1.388
1.437
N
1
A
A
N7
C8
G
G
42
42
-0.044
0.006
1.305
1.261
N
1
A
A
C8
N9
G
G
42
42
-0.072
0.007
1.374
1.302
N
1
A
A
N9
C4
G
G
42
42
-0.066
0.008
1.375
1.309
N
16.8
16.8
0
365
0
365
0
Separate Fitting of the Anticodon Loop Region of tRNA (nucleotide 26-42) in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome
1
N
N
covale
1.599
both
A
A
38
A
O3'
A
13
1_555
A
PSU
39
A
P
PSU
14
1_555
covale
1.600
both
A
PSU
39
A
O3'
PSU
14
1_555
A
C
40
A
P
C
15
1_555
hydrog
WATSON-CRICK
A
C
28
A
N3
C
3
1_555
A
G
42
A
N1
G
17
1_555
hydrog
WATSON-CRICK
A
C
28
A
N4
C
3
1_555
A
G
42
A
O6
G
17
1_555
hydrog
WATSON-CRICK
A
C
28
A
O2
C
3
1_555
A
G
42
A
N2
G
17
1_555
hydrog
WATSON-CRICK
A
A
29
A
N1
A
4
1_555
A
U
41
A
N3
U
16
1_555
hydrog
WATSON-CRICK
A
A
29
A
N6
A
4
1_555
A
U
41
A
O4
U
16
1_555
hydrog
WATSON-CRICK
A
G
30
A
N1
G
5
1_555
A
C
40
A
N3
C
15
1_555
hydrog
WATSON-CRICK
A
G
30
A
N2
G
5
1_555
A
C
40
A
O2
C
15
1_555
hydrog
WATSON-CRICK
A
G
30
A
O6
G
5
1_555
A
C
40
A
N4
C
15
1_555
hydrog
REVERSED WATSON-CRICK
A
A
31
A
N1
A
6
1_555
A
PSU
39
A
N3
PSU
14
1_555
hydrog
REVERSED WATSON-CRICK
A
A
31
A
N6
A
6
1_555
A
PSU
39
A
O2
PSU
14
1_555
RNA
tRNA, ternary complex, cryo-EM, 70S E.coli ribosome, conformational change, RNA
1LU3
PDB
1
1LU3
26
42
1LU3
26
42
1LU3
A
1
1
17